RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18237
(1050 letters)
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 131 bits (332), Expect = 1e-35
Identities = 46/175 (26%), Positives = 66/175 (37%), Gaps = 18/175 (10%)
Query: 766 DLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCT 825
D+NEC P+ C G C+NT GSY C+CP + + T C+D N +
Sbjct: 2 DVNECL-DPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG----NCYLDIRPR 56
Query: 826 NLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQ 885
NG C+ G C + + + P +
Sbjct: 57 GDNGDTACSNEIGVGVSKASCC------------CSLGKAWGTPCEM-CPAVNTSEYKIL 103
Query: 886 CTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNN 940
C G+ N DIDEC P +C G C+N GSF+C C G+ L+ +
Sbjct: 104 CPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDT 158
Score = 127 bits (321), Expect = 4e-34
Identities = 45/191 (23%), Positives = 66/191 (34%), Gaps = 37/191 (19%)
Query: 860 TDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTC 919
TD++EC P C +G+C N GS+ C C + LN R CVD + +
Sbjct: 1 TDVNEC-LDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLD----IRP 55
Query: 920 VNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECES 979
G C G +S + C + +
Sbjct: 56 RGDNGDTACSNEIGVGVSKASCCC-----------------------------SLGKAWG 86
Query: 980 PQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGS 1039
+ + C ++ P EDI+EC+E +C+ G C NTFGS
Sbjct: 87 TPCEMCPAVNTSEYKILCPGGEGFRPNPITVIL---EDIDECQELPGLCQGGKCINTFGS 143
Query: 1040 FMCSCQDGFKL 1050
F C C G+ L
Sbjct: 144 FQCRCPTGYYL 154
Score = 110 bits (278), Expect = 2e-28
Identities = 47/189 (24%), Positives = 58/189 (30%), Gaps = 35/189 (18%)
Query: 713 EGICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECAL 772
+ G C N GS+IC CPP + L+P + C D
Sbjct: 8 DPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCV------------------DTRSGNC 49
Query: 773 MPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGGFE 832
+G C G + C + P
Sbjct: 50 ----YLDIRPRGDNGDTACSNEIGVGVSKASC-CCSLGKAWGTPCEM-CPAVNTSEYKIL 103
Query: 833 CTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCANGY 892
C EG+ P P+ DIDEC E PG+C G C N GSFQC C GY
Sbjct: 104 CPGGEGFRPNPITV-----------ILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGY 152
Query: 893 TLNTARDSC 901
LN C
Sbjct: 153 YLNEDTRVC 161
Score = 99.4 bits (248), Expect = 3e-24
Identities = 44/211 (20%), Positives = 59/211 (27%), Gaps = 64/211 (30%)
Query: 149 IDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYIN 208
++EC L P C G C+NTPGS+ C C F + C+D
Sbjct: 3 VNEC-LDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGN------------- 48
Query: 209 ECEEMPEICGSGTCENNIGSFSCRYINECEEMPEICGSGTCENNIGSFSCRCEDGYSVKP 268
C + G +C E G V
Sbjct: 49 --------CYLD--------------------------IRPRGDNGDTACSNEIGVGVSK 74
Query: 269 AEGPACTDENECTMRTHNCDDNADCINNP------------VNKTGTRCVDIDECATSIQ 316
A C + C+ + N DIDEC
Sbjct: 75 AS--CCCSLGKAW--GTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPG 130
Query: 317 RCGEGFCVNDVGTYHCVCPDGYMLLPSGKEC 347
C G C+N G++ C CP GY L + C
Sbjct: 131 LCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 95.5 bits (238), Expect = 6e-23
Identities = 62/231 (26%), Positives = 88/231 (38%), Gaps = 71/231 (30%)
Query: 576 DLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVNKRESRCYLD 635
D++EC + C +G C N GS+ C+C + L C D CYLD
Sbjct: 2 DVNECLDPT-TCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG--------NCYLD 52
Query: 636 TEEEEEEEEEEEGGYGGGSRRVTCTKEIAGSTTRSTCCCSIGKAWGPQCEECPAVGSDEH 695
+ G C+ EI ++++CCCS+GKAWG CE CPA
Sbjct: 53 I-----RPRGDNGDT-------ACSNEIGVGVSKASCCCSLGKAWGTPCEMCPA------ 94
Query: 696 KTLCPGGSGYRPNSATREGICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCP 755
+C G+R +P
Sbjct: 95 --------------------------VNTSEYKILCPGGEGFRPNPITVIL--------- 119
Query: 756 EGVGRGDKGEDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKIC 806
ED++EC +P CQGG+CINT GS++C CP GY +E ++C
Sbjct: 120 ---------EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 90.5 bits (225), Expect = 4e-21
Identities = 28/133 (21%), Positives = 41/133 (30%), Gaps = 20/133 (15%)
Query: 711 TREGICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNEC 770
TR G C + + G C+ G +S C L +
Sbjct: 44 TRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCC-------------------SLGKA 84
Query: 771 ALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGG 830
P ++ C G+ + I D +EC +P +C G C N G
Sbjct: 85 WGTPCEM-CPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGS 143
Query: 831 FECTCSEGYAPGP 843
F+C C GY
Sbjct: 144 FQCRCPTGYYLNE 156
Score = 68.2 bits (167), Expect = 2e-13
Identities = 25/126 (19%), Positives = 35/126 (27%), Gaps = 17/126 (13%)
Query: 234 INECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADC 293
+NEC + P C SG C N GS+ C C + + P C D NC +
Sbjct: 3 VNECLD-PTTCISGNCVNTPGSYICDCPPDFELNP-TRVGCVDTRSG-----NCYLDIRP 55
Query: 294 INNP----------VNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPS 343
+ V + C A C +G+ P
Sbjct: 56 RGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPI 115
Query: 344 GKECID 349
D
Sbjct: 116 TVILED 121
Score = 67.8 bits (166), Expect = 3e-13
Identities = 27/140 (19%), Positives = 41/140 (29%), Gaps = 24/140 (17%)
Query: 99 CVCDEGFRG--DGYSCEDIDECTDNTNYCDYILL----CGSKPGEFMNPMTNKTEEIDEC 152
C C F C D + C ++ G ++ + + +
Sbjct: 26 CDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSK-ASCCCSLGKA 84
Query: 153 NLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINECEE 212
P + C GF + T D I+EC+E
Sbjct: 85 WGTPCEMCP-AVNTSEYKILCPGGEGFRPNPITVILED----------------IDECQE 127
Query: 213 MPEICGSGTCENNIGSFSCR 232
+P +C G C N GSF CR
Sbjct: 128 LPGLCQGGKCINTFGSFQCR 147
Score = 61.6 bits (150), Expect = 3e-11
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 99 CVCDEGFRGDGYSC-EDIDECTDNTNYCDYIL-------LCGSKPGEFMNPMTNKTEEID 150
C + G SC + + + LC G NP+T E+ID
Sbjct: 64 CSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDID 123
Query: 151 ECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQC 188
EC +P +C G C+NT GSF C+C G+ + DT C
Sbjct: 124 ECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 52.7 bits (127), Expect = 4e-08
Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 307 DIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYT------ 360
D++EC C G CVN G+Y C CP + L P+ C+D R CYL+
Sbjct: 2 DVNECLDP-TTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 361 DGLCSLPMSNEQTRMVCCCSMGQSWGKPCQPCPPPGSRDYILLCGKDFAKLCPEG---VG 417
D CS + ++ CCCS+G++WG PC+ CP + +Y +LC EG
Sbjct: 61 DTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCP------GGEGFRPNP 114
Query: 418 RGDKGEDLNECRT 430
ED++EC+
Sbjct: 115 ITVILEDIDECQE 127
Score = 45.8 bits (109), Expect = 1e-05
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 574 CIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYC 616
D+DEC+ + LC+ G+C N GSF C C GY L + + C
Sbjct: 119 LEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 42.3 bits (100), Expect = 2e-04
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 572 NDCIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVN 626
+ C L + + C +G+ D+DEC+E+
Sbjct: 76 SCCCSLGKAWGTPCEM-CPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELP 129
Score = 37.3 bits (87), Expect = 0.009
Identities = 8/60 (13%), Positives = 14/60 (23%), Gaps = 4/60 (6%)
Query: 573 DCIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVNKRESRC 632
C+D + R R + G C G ++ C +
Sbjct: 40 GCVDTRSGN----CYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAV 95
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 105 bits (264), Expect = 2e-26
Identities = 48/176 (27%), Positives = 61/176 (34%), Gaps = 34/176 (19%)
Query: 765 EDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTC 824
D++EC P C G C N+ GS+ CEC + D T ICI+ + TC
Sbjct: 2 ADIDECESSP--CINGVCKNSPGSFICECSSESTLDPTKTICIETIKG----------TC 49
Query: 825 TNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSF 884
C + +T +C G
Sbjct: 50 WQTVIDGRCEINING-------------------ATLKSQCCSSLGAAWG--SPCTLCQV 88
Query: 885 QCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNN 940
C GY+ C DIDEC P +C NG CVN GSFKC C +G L
Sbjct: 89 DPICGKGYSRIKGT-QCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATG 143
Score = 105 bits (263), Expect = 2e-26
Identities = 49/148 (33%), Positives = 59/148 (39%), Gaps = 11/148 (7%)
Query: 903 DIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGN 962
DIDEC P C NG C N+ GSF C C + L + C + + Q + G
Sbjct: 3 DIDECESSP--CINGVCKNSPGSFICECSSESTL---DPTKTICIETIKGTCWQTVIDGR 57
Query: 963 CTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECE 1022
C + C S A TL C Y G C EDI+ECE
Sbjct: 58 CEININGATLKSQCCSSLGAAW--GSPCTLCQVDPICGKGYSRIK-GTQC---EDIDECE 111
Query: 1023 EHDNICENGHCTNTFGSFMCSCQDGFKL 1050
+C+NG C NT GSF C C G L
Sbjct: 112 VFPGVCKNGLCVNTRGSFKCQCPSGMTL 139
Score = 94.0 bits (234), Expect = 1e-22
Identities = 51/203 (25%), Positives = 69/203 (33%), Gaps = 56/203 (27%)
Query: 146 TEEIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGT 205
+ +IDEC P C +G C N+PGSF C+C+ D CI+ + C
Sbjct: 1 SADIDECESSP--CINGVCKNSPGSFICECSSESTLDPTKTICIETIKGT-----CWQT- 52
Query: 206 YINECEEMPEICGSGTCENNIGSFSCRYINECEEMPEICGSGTCENNIGSFSCRCEDGYS 265
G CE NI + + ++C C C GYS
Sbjct: 53 -----------VIDGRCEININGATLK--SQCCSSLGAAWGSPCTL--CQVDPICGKGYS 97
Query: 266 VKPAEGPACTDENECTMRTHNCDDNADCINNPVNKTGTRCVDIDECATSIQRCGEGFCVN 325
GT+C DIDEC C G CVN
Sbjct: 98 ---------------------------------RIKGTQCEDIDECEVFPGVCKNGLCVN 124
Query: 326 DVGTYHCVCPDGYMLLPSGKECI 348
G++ C CP G L +G+ C+
Sbjct: 125 TRGSFKCQCPSGMTLDATGRICL 147
Score = 83.2 bits (206), Expect = 8e-19
Identities = 55/232 (23%), Positives = 76/232 (32%), Gaps = 87/232 (37%)
Query: 576 DLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVNKRESRCYLD 635
D+DEC S C NG C+N+ GSF CEC TL C + +
Sbjct: 3 DIDECE--SSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDG---- 56
Query: 636 TEEEEEEEEEEEGGYGGGSRRVTCTKEIAGSTTRSTCCCSIGKAWGPQCEECPAVGSDEH 695
C I G+T +S CC S+G AWG
Sbjct: 57 ----------------------RCEININGATLKSQCCSSLGAAWG-------------- 80
Query: 696 KTLCPGGSGYRPNSATREGICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCP 755
+ C GY C+
Sbjct: 81 --------------------------SPCTLCQVDPICGKGYSRI-KGTQCE-------- 105
Query: 756 EGVGRGDKGEDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICI 807
D++EC + P C+ G C+NT GS++C+CP+G D TG+IC+
Sbjct: 106 ----------DIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147
Score = 59.7 bits (145), Expect = 1e-10
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 307 DIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYTDGLCSL 366
DIDEC +S C G C N G++ C C L P+ CI+ + C+ DG C +
Sbjct: 3 DIDECESS--PCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEI 60
Query: 367 PMSNEQTRMVCCCSMGQSWGKPCQPCP 393
++ + CC S+G +WG PC C
Sbjct: 61 NINGATLKSQCCSSLGAAWGSPCTLCQ 87
Score = 57.4 bits (139), Expect = 9e-10
Identities = 26/135 (19%), Positives = 34/135 (25%), Gaps = 31/135 (22%)
Query: 99 CVCDEGFRG--DGYSCEDIDECTDNTNYCDYILLCGSKPGEFMNPMTNKTEEIDECNLMP 156
C C C + + T D N +C
Sbjct: 26 CECSSESTLDPTKTICIETIKGTCWQTVIDGRCEIN----------INGATLKSQCCSSL 75
Query: 157 NMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINECEEMPEI 216
T C +G+ QC D I+ECE P +
Sbjct: 76 GAAW--GSPCTLCQVDPICGKGYSRI-KGTQCED----------------IDECEVFPGV 116
Query: 217 CGSGTCENNIGSFSC 231
C +G C N GSF C
Sbjct: 117 CKNGLCVNTRGSFKC 131
Score = 45.8 bits (109), Expect = 7e-06
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 574 CIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYC 616
C D+DEC + +C+NG C N GSF C+C G TL + G+ C
Sbjct: 104 CEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
Score = 30.0 bits (68), Expect = 2.1
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 23/76 (30%)
Query: 573 DCIDLDECRMM----SYLCRNG------------------RCRNNIGSFFCECLQGYTLA 610
CI+ + C + C +GY+
Sbjct: 40 ICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRI 99
Query: 611 SEGQYCRDVDECKEVN 626
+G C D+DEC+
Sbjct: 100 -KGTQCEDIDECEVFP 114
Score = 28.9 bits (65), Expect = 4.7
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
Query: 455 CYRSLTNGRCVLPTGPALLMEVTRMDCCCTMGMAWGPQCQLCPTR----------GSQTC 504
C++++ +GRC + A + CC ++G AWG C LC C
Sbjct: 49 CWQTVIDGRCEININGA----TLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQC 104
Query: 505 EDINECLELSNQCA-FRCHN 523
EDI+EC C C N
Sbjct: 105 EDIDECEVFPGVCKNGLCVN 124
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 92.0 bits (229), Expect = 1e-22
Identities = 39/86 (45%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 860 TDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTA-RDSCVDIDECARHPNICNNGT 918
TDIDEC P +C G C N G F+C C GY +C+DIDEC R P +C G
Sbjct: 1 TDIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGV 60
Query: 919 CVNAIGSFKCHCYAGFKLSHNN-DCI 943
C N GS++C C G +LS N CI
Sbjct: 61 CHNTEGSYRCECPPGHQLSPNISACI 86
Score = 83.9 bits (208), Expect = 9e-20
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 766 DLNECALMPSACQGGECINTDGSYRCECPAGYVKDET-GKICIDDNECLSIPNICGNGTC 824
D++EC + P C G+C+NT G + C+C GY K C+D +EC P +C G C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 825 TNLNGGFECTCSEGYAPGP 843
N G + C C G+ P
Sbjct: 62 HNTEGSYRCECPPGHQLSP 80
Score = 83.5 bits (207), Expect = 1e-19
Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 26/111 (23%)
Query: 903 DIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGN 962
DIDEC P++C G CVN G F+C C G++ NC DI+EC+
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMK--NCMDIDECQRDPLL---- 55
Query: 963 CTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACV 1013
C G C NT GS+ C CPP +QL+P +AC+
Sbjct: 56 --------------------CRGGVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 79.6 bits (197), Expect = 2e-18
Identities = 33/81 (40%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 972 TDINEC-ESPQACLYGNCTNTLGSFSCTCPPNYQLTPA-GNACVVLEDINECEEHDNICE 1029
TDI+EC SP C G C NT G F C C Y+ C DI+EC+ +C
Sbjct: 1 TDIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC---MDIDECQRDPLLCR 57
Query: 1030 NGHCTNTFGSFMCSCQDGFKL 1050
G C NT GS+ C C G +L
Sbjct: 58 GGVCHNTEGSYRCECPPGHQL 78
Score = 75.8 bits (187), Expect = 5e-17
Identities = 35/115 (30%), Positives = 45/115 (39%), Gaps = 31/115 (26%)
Query: 234 INECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADC 293
I+EC P++CG G C N G F C+C++GY
Sbjct: 3 IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFM------------------------ 38
Query: 294 INNPVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECI 348
C+DIDEC C G C N G+Y C CP G+ L P+ CI
Sbjct: 39 -------MMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 70.4 bits (173), Expect = 4e-15
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 17/85 (20%)
Query: 149 IDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYD-SDTHQCIDINECEEMPEICGSGTYI 207
IDEC + P++C G C+NTPG F C+C+ G+ C+D I
Sbjct: 3 IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMD----------------I 46
Query: 208 NECEEMPEICGSGTCENNIGSFSCR 232
+EC+ P +C G C N GS+ C
Sbjct: 47 DECQRDPLLCRGGVCHNTEGSYRCE 71
Score = 68.5 bits (168), Expect = 2e-14
Identities = 31/91 (34%), Positives = 38/91 (41%), Gaps = 19/91 (20%)
Query: 718 SPGKCQNVMGSFICTCPPGYRLSP-DKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSA 776
G+C N G F C C GY +C D++EC P
Sbjct: 14 GRGQCVNTPGDFECKCDEGYESGFMMMKNC------------------MDIDECQRDPLL 55
Query: 777 CQGGECINTDGSYRCECPAGYVKDETGKICI 807
C+GG C NT+GSYRCECP G+ CI
Sbjct: 56 CRGGVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 60.4 bits (147), Expect = 1e-11
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 114 DIDECTDNTNYCDYIL--------LCGSKPGEFMNPMTNKT-EEIDECNLMPNMCNHGTC 164
DIDEC + + C C G M K +IDEC P +C G C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 165 MNTPGSFHCQCNRGFLYDSDTHQCI 189
NT GS+ C+C G + CI
Sbjct: 62 HNTEGSYRCECPPGHQLSPNISACI 86
Score = 51.9 bits (125), Expect = 1e-08
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 576 DLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTL-ASEGQYCRDVDECKEVN 626
D+DECR+ LC G+C N G F C+C +GY + C D+DEC+
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDP 53
Score = 48.4 bits (116), Expect = 2e-07
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 573 DCIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYC 616
+C+D+DEC+ LCR G C N GS+ CEC G+ L+ C
Sbjct: 42 NCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 85
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 89.2 bits (222), Expect = 5e-21
Identities = 55/158 (34%), Positives = 73/158 (46%), Gaps = 31/158 (19%)
Query: 765 EDLNECALMPSACQ-GGECINTDGSYRCECPAGYVKDETGKIC-IDDNECLSIPNICGNG 822
+D++EC+L + C+ G+CINT GS+ C+C GY TG C ID NEC+S P C N
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGY----TGPRCEIDVNECVSNP--CQND 56
Query: 823 -TCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICAN-GDCANF 880
TC + G F+C C GY G C + DEC P C + G C +
Sbjct: 57 ATCLDQIGEFQCICMPGYE-GVH--C-----------EVNTDECASSP--CLHNGRCLDK 100
Query: 881 QGSFQCTCANGYTLNTARDSC-VDIDECARHPNICNNG 917
FQC C G+T C VD+ + N
Sbjct: 101 INEFQCECPTGFT----GHLCQVDLHHILDAQKMVWNH 134
Score = 78.4 bits (194), Expect = 3e-17
Identities = 51/162 (31%), Positives = 65/162 (40%), Gaps = 33/162 (20%)
Query: 806 CIDDNECLSIPNICGN-GTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDE 864
D +EC N C + G C N G FEC C +GY GP C D++E
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT-GPR--C-----------EIDVNE 47
Query: 865 CYERPGICANG-DCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNIC-NNGTCVNA 922
C P C N C + G FQC C GY V+ DECA P C +NG C++
Sbjct: 48 CVSNP--CQNDATCLDQIGEFQCICMPGY---EGVHCEVNTDECASSP--CLHNGRCLDK 100
Query: 923 IGSFKCHCYAGFKLSHNNDCIGNC-TDINECESPQACLYGNC 963
I F+C C GF C D++ + N
Sbjct: 101 INEFQCECPTGFTGH-------LCQVDLHHILD-AQKMVWNH 134
Score = 76.9 bits (190), Expect = 1e-16
Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 50/178 (28%)
Query: 859 STDIDECYERPGICAN-GDCANFQGSFQCTCANGYTLNTARDSC-VDIDECARHPNIC-N 915
+ D+DEC C + G C N GSF+C C GYT C +D++EC +P C N
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVSNP--CQN 55
Query: 916 NGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNC-TDI 974
+ TC++ IG F+C C G++ G +C +
Sbjct: 56 DATCLDQIGEFQCICMPGYE--------------------------------GVHCEVNT 83
Query: 975 NECESPQACLY-GNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENG 1031
+EC S CL+ G C + + F C CP + G+ C V D++ + + N
Sbjct: 84 DECAS-SPCLHNGRCLDKINEFQCECPTGFT----GHLCQV--DLHHILDAQKMVWNH 134
Score = 68.4 bits (168), Expect = 8e-14
Identities = 44/163 (26%), Positives = 61/163 (37%), Gaps = 46/163 (28%)
Query: 716 CPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPS 775
C GKC N +GSF C C GY C+ D+NEC P
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYT----GPRCE-----------------IDVNECVSNP- 52
Query: 776 ACQ-GGECINTDGSYRCECPAGYVKDETGKIC-IDDNECLSIPNICGN-GTCTNLNGGFE 832
CQ C++ G ++C C GY G C ++ +EC S P C + G C + F+
Sbjct: 53 -CQNDATCLDQIGEFQCICMPGY----EGVHCEVNTDECASSP--CLHNGRCLDKINEFQ 105
Query: 833 CTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANG 875
C C G+ G L C D+ + + N
Sbjct: 106 CECPTGFT-GHL--C-----------QVDLHHILDAQKMVWNH 134
Score = 59.9 bits (146), Expect = 7e-11
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 42/150 (28%)
Query: 147 EEIDECNLMPNMC-NHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGT 205
+++DEC+L N C + G C+NT GSF CQC +G+ + ID+NEC P C +
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGY---TGPRCEIDVNECVSNP--CQND- 56
Query: 206 YINECEEMPEICGSGTCENNIGSFSCR------------YINECEEMPEICG-SGTCENN 252
TC + IG F C +EC P C +G C +
Sbjct: 57 --------------ATCLDQIGEFQCICMPGYEGVHCEVNTDECASSP--CLHNGRCLDK 100
Query: 253 IGSFSCRCEDGYSVKPAEGPAC-TDENECT 281
I F C C G++ G C D +
Sbjct: 101 INEFQCECPTGFT-----GHLCQVDLHHIL 125
Score = 54.5 bits (132), Expect = 5e-09
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 19/120 (15%)
Query: 230 SCRYINECEEMPEICG-SGTCENNIGSFSCRCEDGYSVKPAEGPAC-TDENECTMRTHNC 287
S + ++EC C +G C N +GSF C+C GY+ GP C D NEC ++ C
Sbjct: 1 SAQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT-----GPRCEIDVNECV--SNPC 53
Query: 288 DDNADCINN--------PVNKTGTRC-VDIDECATSIQRCGEGFCVNDVGTYHCVCPDGY 338
++A C++ G C V+ DECA+S G C++ + + C CP G+
Sbjct: 54 QNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHN-GRCLDKINEFQCECPTGF 112
Score = 41.4 bits (98), Expect = 2e-04
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 6/51 (11%)
Query: 574 CIDLDECRMMSYLCRN-GRCRNNIGSFFCECLQGYTLASEGQYC-RDVDEC 622
D+DEC + + C + G+C N +GSF C+CLQGYT G C DV+EC
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNEC 48
Score = 34.9 bits (81), Expect = 0.040
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 17/114 (14%)
Query: 99 CVCDEGFRGDGYSCE-DIDECTDNTNYCDYILLCGSKPGEF----MNPMTNKT--EEIDE 151
C C +G+ G CE D++EC N C C + GEF M DE
Sbjct: 30 CQCLQGYTGP--RCEIDVNECVSNP--CQNDATCLDQIGEFQCICMPGYEGVHCEVNTDE 85
Query: 152 CNLMPNMC-NHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSG 204
C + C ++G C++ F C+C GF + +D++ + ++ +
Sbjct: 86 C--ASSPCLHNGRCLDKINEFQCECPTGF---TGHLCQVDLHHILDAQKMVWNH 134
Score = 34.1 bits (79), Expect = 0.066
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 575 IDLDECRMMSYLCRN-GRCRNNIGSFFCECLQGYTLASEGQYC-RDVDEC 622
++ DEC S C + GRC + I F CEC G+T G C D+
Sbjct: 81 VNTDEC--ASSPCLHNGRCLDKINEFQCECPTGFT----GHLCQVDLHHI 124
Score = 33.7 bits (78), Expect = 0.096
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 575 IDLDECRMMSYLCRNG-RCRNNIGSFFCECLQGYTLASEGQYC-RDVDEC 622
ID++EC +S C+N C + IG F C C+ GY G +C + DEC
Sbjct: 43 IDVNEC--VSNPCQNDATCLDQIGEFQCICMPGYE----GVHCEVNTDEC 86
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 85.8 bits (213), Expect = 2e-20
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 861 DIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCV 920
D+DEC +P IC C N G F+C C GY N SC DIDEC+ + C CV
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENM--C-AQLCV 58
Query: 921 NAIGSFKCHC--YAGFKLSHNNDCIGNCTDIN 950
N G + C+C GFKL+ + +C ++
Sbjct: 59 NYPGGYTCYCDGKKGFKLAQDQK---SCEVVS 87
Score = 75.4 bits (186), Expect = 7e-17
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 765 EDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTC 824
+D++EC+L PS C C N G + CECP GY + K C D +EC N+C C
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE--NMC-AQLC 57
Query: 825 TNLNGGFECTCSE 837
N GG+ C C
Sbjct: 58 VNYPGGYTCYCDG 70
Score = 71.9 bits (177), Expect = 1e-15
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 19/85 (22%)
Query: 147 EEIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTY 206
+++DEC+L P++C C N PG F C+C G+ Y+ + C DI+EC E
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE---------- 50
Query: 207 INECEEMPEICGSGTCENNIGSFSC 231
N C + C N G ++C
Sbjct: 51 -NMC--------AQLCVNYPGGYTC 66
Score = 71.9 bits (177), Expect = 1e-15
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 35/119 (29%)
Query: 903 DIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGN 962
D+DEC+ P+IC C N G F+C C G++ + + +C DI+EC
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSK---SCEDIDECSE-------- 50
Query: 963 CTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTC--PPNYQLTPAGNACVVLEDIN 1019
N C C N G ++C C ++L +C E ++
Sbjct: 51 ------------NMCA-------QLCVNYPGGYTCYCDGKKGFKLAQDQKSC---EVVS 87
Score = 70.4 bits (173), Expect = 5e-15
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 973 DINEC-ESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENG 1031
D++EC P C C N G F C CP Y+ +C EDI+EC E+ +C
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSC---EDIDECSEN--MCA-Q 55
Query: 1032 HCTNTFGSFMCSC--QDGFKL 1050
C N G + C C + GFKL
Sbjct: 56 LCVNYPGGYTCYCDGKKGFKL 76
Score = 66.5 bits (163), Expect = 1e-13
Identities = 36/100 (36%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 808 DDNECLSIPNICGNGTCTNLNGGFECTCSEGYAPGPLG-SCAILLTLPPISPSTDIDECY 866
D +EC P+ICG C N+ G FEC C EGY SC DIDEC
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSC------------EDIDECS 49
Query: 867 ERPGICANGDCANFQGSFQCTC--ANGYTLNTARDSCVDI 904
E CA C N+ G + C C G+ L + SC +
Sbjct: 50 ENM--CA-QLCVNYPGGYTCYCDGKKGFKLAQDQKSCEVV 86
Score = 63.8 bits (156), Expect = 1e-12
Identities = 33/118 (27%), Positives = 42/118 (35%), Gaps = 37/118 (31%)
Query: 234 INECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADC 293
++EC P ICG+ C+N G F C C +GY
Sbjct: 3 VDECSLKPSICGTAVCKNIPGDFECECPEGYRY--------------------------- 35
Query: 294 INNPVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVC--PDGYMLLPSGKECID 349
N C DIDEC+ ++ C CVN G Y C C G+ L K C
Sbjct: 36 -----NLKSKSCEDIDECSENM--C-AQLCVNYPGGYTCYCDGKKGFKLAQDQKSCEV 85
Score = 61.5 bits (150), Expect = 6e-12
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 24/103 (23%)
Query: 710 ATREGICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNE 769
+ + IC + C+N+ G F C CP GYR + SC+ D++E
Sbjct: 7 SLKPSICGT-AVCKNIPGDFECECPEGYRYNLKSKSCE------------------DIDE 47
Query: 770 CALMPSACQGGECINTDGSYRCEC--PAGYVKDETGKICIDDN 810
C+ + C C+N G Y C C G+ + K C +
Sbjct: 48 CS--ENMCA-QLCVNYPGGYTCYCDGKKGFKLAQDQKSCEVVS 87
Score = 56.9 bits (138), Expect = 3e-10
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 576 DLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKE 624
D+DEC + +C C+N G F CEC +GY + + C D+DEC E
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE 50
Score = 53.0 bits (128), Expect = 5e-09
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 307 DIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECID 349
D+DEC+ CG C N G + C CP+GY K C D
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCED 44
Score = 50.3 bits (121), Expect = 5e-08
Identities = 25/98 (25%), Positives = 34/98 (34%), Gaps = 41/98 (41%)
Query: 99 CVCDEGFR--GDGYSCEDIDECTDNTNYCDYILLCGSKPGEFMNPMTNKTEEIDECNLMP 156
C C EG+R SCEDIDEC++N
Sbjct: 27 CECPEGYRYNLKSKSCEDIDECSENM---------------------------------- 52
Query: 157 NMCNHGTCMNTPGSFHCQCN--RGFLYDSDTHQCIDIN 192
C C+N PG + C C+ +GF D C ++
Sbjct: 53 --CAQ-LCVNYPGGYTCYCDGKKGFKLAQDQKSCEVVS 87
Score = 48.8 bits (117), Expect = 2e-07
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 1016 EDINECEEHDNICENGHCTNTFGSFMCSCQDGFKL 1050
+D++EC +IC C N G F C C +G++
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRY 35
Score = 38.0 bits (89), Expect = 0.001
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 574 CIDLDECRMMSYLCRNGRCRNNIGSFFCEC--LQGYTLASEGQYCRDV 619
C D+DEC +C C N G + C C +G+ LA + + C V
Sbjct: 42 CEDIDECS--ENMC-AQLCVNYPGGYTCYCDGKKGFKLAQDQKSCEVV 86
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 85.3 bits (212), Expect = 3e-20
Identities = 48/83 (57%), Positives = 60/83 (72%), Gaps = 4/83 (4%)
Query: 765 EDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTC 824
D++EC P C+ G+CINTDGSYRCECP GY+ G C+D +EC S+ N CGNGTC
Sbjct: 3 VDMDECK-EPDVCKHGQCINTDGSYRCECPFGYILA--GNECVDTDEC-SVGNPCGNGTC 58
Query: 825 TNLNGGFECTCSEGYAPGPLGSC 847
N+ GGFECTC EG+ PGP+ +C
Sbjct: 59 KNVIGGFECTCEEGFEPGPMMTC 81
Score = 81.5 bits (202), Expect = 5e-19
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 970 NCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICE 1029
+ D++EC+ P C +G C NT GS+ C CP Y L GN C D +EC N C
Sbjct: 1 SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILA--GNEC---VDTDECSV-GNPCG 54
Query: 1030 NGHCTNTFGSFMCSCQDGFKL 1050
NG C N G F C+C++GF+
Sbjct: 55 NGTCKNVIGGFECTCEEGFEP 75
Score = 81.1 bits (201), Expect = 6e-19
Identities = 37/83 (44%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 860 TDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTC 919
D+DEC + P +C +G C N GS++C C GY L + CVD DEC+ N C NGTC
Sbjct: 3 VDMDEC-KEPDVCKHGQCINTDGSYRCECPFGYILA--GNECVDTDECSV-GNPCGNGTC 58
Query: 920 VNAIGSFKCHCYAGFKLSHNNDC 942
N IG F+C C GF+ C
Sbjct: 59 KNVIGGFECTCEEGFEPGPMMTC 81
Score = 78.0 bits (193), Expect = 7e-18
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 31/111 (27%)
Query: 900 SCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACL 959
S VD+DEC P++C +G C+N GS++C C G+ L+
Sbjct: 1 SAVDMDECK-EPDVCKHGQCINTDGSYRCECPFGYILA---------------------- 37
Query: 960 YGNCTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGN 1010
G+ C D +EC C G C N +G F CTC ++ P
Sbjct: 38 --------GNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPMMT 80
Score = 66.8 bits (164), Expect = 8e-14
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 806 CIDDNECLSIPNICGNGTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDEC 865
+D +EC P++C +G C N +G + C C GY C D DEC
Sbjct: 2 AVDMDECKE-PDVCKHGQCINTDGSYRCECPFGYILAG-NEC------------VDTDEC 47
Query: 866 YERPGICANGDCANFQGSFQCTCANGYTLN 895
C NG C N G F+CTC G+
Sbjct: 48 SVGNP-CGNGTCKNVIGGFECTCEEGFEPG 76
Score = 63.4 bits (155), Expect = 1e-12
Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 24/102 (23%)
Query: 149 IDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYIN 208
+DEC P++C HG C+NT GS+ C+C G++ + C+D +EC
Sbjct: 5 MDEC-KEPDVCKHGQCINTDGSYRCECPFGYILAGNE--CVDTDECSV------------ 49
Query: 209 ECEEMPEICGSGTCENNIGSFSCRYINECEEMPEICGSGTCE 250
CG+GTC+N IG F C CEE E TCE
Sbjct: 50 -----GNPCGNGTCKNVIGGFEC----TCEEGFEPGPMMTCE 82
Score = 60.7 bits (148), Expect = 1e-11
Identities = 32/115 (27%), Positives = 43/115 (37%), Gaps = 36/115 (31%)
Query: 230 SCRYINECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDD 289
S ++EC+E P++C G C N GS+ C C GY
Sbjct: 1 SAVDMDECKE-PDVCKHGQCINTDGSYRCECPFGYI------------------------ 35
Query: 290 NADCINNPVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSG 344
G CVD DEC+ CG G C N +G + C C +G+ P
Sbjct: 36 ----------LAGNECVDTDECSVG-NPCGNGTCKNVIGGFECTCEEGFEPGPMM 79
Score = 54.5 bits (132), Expect = 1e-09
Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 21/88 (23%)
Query: 716 CPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPS 775
G+C N GS+ C CP GY L N C D +EC++ +
Sbjct: 13 VCKHGQCINTDGSYRCECPFGYIL--AGNECV------------------DTDECSV-GN 51
Query: 776 ACQGGECINTDGSYRCECPAGYVKDETG 803
C G C N G + C C G+
Sbjct: 52 PCGNGTCKNVIGGFECTCEEGFEPGPMM 79
Score = 49.1 bits (118), Expect = 1e-07
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 574 CIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVN 626
+D+DEC+ +C++G+C N GS+ CEC GY LA G C D DEC N
Sbjct: 2 AVDMDECKEPD-VCKHGQCINTDGSYRCECPFGYILA--GNECVDTDECSVGN 51
Score = 49.1 bits (118), Expect = 1e-07
Identities = 21/88 (23%), Positives = 24/88 (27%), Gaps = 35/88 (39%)
Query: 99 CVCDEGFRGDGYSCEDIDECTDNTNYCDYILLCGSKPGEFMNPMTNKTEEIDECNLMPNM 158
C C G+ G C D DEC+ N
Sbjct: 28 CECPFGYILAGNECVDTDECSVG-----------------------------------NP 52
Query: 159 CNHGTCMNTPGSFHCQCNRGFLYDSDTH 186
C +GTC N G F C C GF
Sbjct: 53 CGNGTCKNVIGGFECTCEEGFEPGPMMT 80
Score = 39.9 bits (94), Expect = 2e-04
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 572 NDCIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEG 613
N+C+D DEC + C NG C+N IG F C C +G+
Sbjct: 39 NECVDTDECSV-GNPCGNGTCKNVIGGFECTCEEGFEPGPMM 79
Score = 32.9 bits (76), Expect = 0.060
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 720 GKCQNVMGSFICTCPPGYRLSPDKNSCQ 747
G C+NV+G F CTC G+ P +C+
Sbjct: 56 GTCKNVIGGFECTCEEGFEPGPM-MTCE 82
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 85.6 bits (212), Expect = 1e-19
Identities = 35/150 (23%), Positives = 52/150 (34%), Gaps = 16/150 (10%)
Query: 766 DLNECALMPSACQGGECINTDGSYRCECPAGYVKDET-----GKICIDDNECLSIPNIC- 819
D CA C + + + C C G+ + C D NEC ++ +
Sbjct: 1 DSRGCA---RWC--PQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSC 55
Query: 820 -GNGTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGIC-ANGDC 877
C N G ++C CS GY S A + D+DEC C ++ C
Sbjct: 56 GKFSDCWNTEGSYDCVCSPGYE---PVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVC 112
Query: 878 ANFQGSFQCTCANGYTLNTARDSCVDIDEC 907
N GS+ C C G+ + C
Sbjct: 113 FNTVGSYSCRCRPGWKPRHGIPNNQKDTVC 142
Score = 85.6 bits (212), Expect = 1e-19
Identities = 37/171 (21%), Positives = 57/171 (33%), Gaps = 37/171 (21%)
Query: 861 DIDECYERPGICANGDCANFQGSFQCTCANGYT-----LNTARDSCVDIDECARHPNIC- 914
D C ++ + C C G++ + T ++C DI+ECA +
Sbjct: 1 DSRGCARW-----CPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSC 55
Query: 915 -NNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTD 973
C N GS+ C C G++ N + C D
Sbjct: 56 GKFSDCWNTEGSYDCVCSPGYEPVSGA--------------------KTFKNESENTCQD 95
Query: 974 INECESPQAC--LYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECE 1022
++EC S Q C NT+GS+SC C P ++ CE
Sbjct: 96 VDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQ---KDTVCE 143
Score = 77.9 bits (192), Expect = 5e-17
Identities = 40/157 (25%), Positives = 56/157 (35%), Gaps = 37/157 (23%)
Query: 903 DIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGN 962
D CAR + +CVN + C C GF
Sbjct: 1 DSRGCARWC--PQDSSCVN---ATACRCNPGFSSF-----------------------SE 32
Query: 963 CTNTLGSNCTDINECESPQAC---LYGNCTNTLGSFSCTCPPNYQLTPAGNACVVL---- 1015
T C DINEC + + +C NT GS+ C C P Y+
Sbjct: 33 IITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENT 92
Query: 1016 -EDINECEEHDNIC-ENGHCTNTFGSFMCSCQDGFKL 1050
+D++EC + C + C NT GS+ C C+ G+K
Sbjct: 93 CQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKP 129
Score = 74.9 bits (184), Expect = 6e-16
Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 27/140 (19%)
Query: 715 ICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMP 774
CP C N + C C PG+ + + + +D+NECA +
Sbjct: 8 WCPQDSSCVN---ATACRCNPGFSSFSEIIT-------------TPMETCDDINECATLS 51
Query: 775 SAC--QGGECINTDGSYRCECPAGYV--------KDETGKICIDDNECLSIPNICG-NGT 823
+ +C NT+GSY C C GY K+E+ C D +EC S + C +
Sbjct: 52 KVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTV 111
Query: 824 CTNLNGGFECTCSEGYAPGP 843
C N G + C C G+ P
Sbjct: 112 CFNTVGSYSCRCRPGWKPRH 131
Score = 73.7 bits (181), Expect = 2e-15
Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 11/100 (11%)
Query: 714 GICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALM 773
C C N GS+ C C PGY + + + C +D++EC+
Sbjct: 53 VSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTC----------QDVDECSSG 102
Query: 774 PSAC-QGGECINTDGSYRCECPAGYVKDETGKICIDDNEC 812
C C NT GSY C C G+ D C
Sbjct: 103 QHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVC 142
Score = 70.6 bits (173), Expect = 2e-14
Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 31/142 (21%)
Query: 234 INECEEMPEICGSGTCENNIGSFSCRCEDGYS----VKPAEGPACTDENEC-TMRTHNCD 288
C C + + + + +CRC G+S + C D NEC T+ +C
Sbjct: 2 SRGCAR---WCPQDS--SCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCG 56
Query: 289 DNADCINNP--------------------VNKTGTRCVDIDECATSIQRCGE-GFCVNDV 327
+DC N N++ C D+DEC++ +C C N V
Sbjct: 57 KFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTV 116
Query: 328 GTYHCVCPDGYMLLPSGKECID 349
G+Y C C G+
Sbjct: 117 GSYSCRCRPGWKPRHGIPNNQK 138
Score = 66.4 bits (162), Expect = 6e-13
Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 26/123 (21%)
Query: 99 CVCDEGFRG-------DGYSCEDIDEC-TDNTNYCDYILLC-----------------GS 133
C C+ GF +C+DI+EC T + C C S
Sbjct: 21 CRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVS 80
Query: 134 KPGEFMNPMTNKTEEIDECNLMPNMC-NHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDIN 192
F N N +++DEC+ + C + C NT GS+ C+C G+
Sbjct: 81 GAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDT 140
Query: 193 ECE 195
CE
Sbjct: 141 VCE 143
Score = 47.9 bits (114), Expect = 1e-06
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 19/96 (19%)
Query: 276 DENECTMRTHNCDDNADCINNP--------------VNKTGTRCVDIDECATSIQRC--G 319
D C C ++ C+N + C DI+ECAT +
Sbjct: 1 DSRGCA---RWCPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGK 57
Query: 320 EGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELC 355
C N G+Y CVC GY + K + C
Sbjct: 58 FSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTC 93
Score = 47.9 bits (114), Expect = 2e-06
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 572 NDCIDLDECRMMSYLCR-NGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECK 623
N C D+DEC + C + C N +GS+ C C G+ + C+
Sbjct: 91 NTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCE 143
Score = 45.6 bits (108), Expect = 8e-06
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 572 NDCIDLDECRMMSYLC--RNGRCRNNIGSFFCECLQGYTLAS--------EGQYCRDVDE 621
C D++EC +S + + C N GS+ C C GY S C+DVDE
Sbjct: 39 ETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDE 98
Query: 622 CKE 624
C
Sbjct: 99 CSS 101
Score = 37.1 bits (86), Expect = 0.007
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 710 ATREGICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQ 747
++ + C S C N +GS+ C C PG++ + Q
Sbjct: 100 SSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQ 137
Score = 28.2 bits (63), Expect = 7.9
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 576 DLDECRMMSYLCRNGRCRNNIGSFFCECLQGYT-----LASEGQYCRDVDECKEVNK 627
D C + C + + + + C C G++ + + + C D++EC ++K
Sbjct: 1 DSRGC---ARWC--PQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSK 52
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 81.2 bits (201), Expect = 1e-18
Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 19/124 (15%)
Query: 778 QGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGGFECTCSE 837
+ + Y + + NECL C + C +L G+EC C +
Sbjct: 2 KHHHHHHPMSDYDIPTTENL----YFQGAMGTNECLDNNGGC-SYVCNDLKIGYECLCPD 56
Query: 838 GYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTA 897
G+ C DIDEC + P C+ C N +G ++C C G+ L+
Sbjct: 57 GFQLVAQRRC------------EDIDEC-QDPDTCS-QLCVNLEGGYKCQCEEGFQLDPH 102
Query: 898 RDSC 901
+C
Sbjct: 103 TKAC 106
Score = 79.7 bits (197), Expect = 4e-18
Identities = 26/139 (18%), Positives = 41/139 (29%), Gaps = 35/139 (25%)
Query: 874 NGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAG 933
+ + + + +EC + C+ C + ++C C G
Sbjct: 3 HHHHHHPMSDYDIPTTENLYF----QGAMGTNECLDNNGGCS-YVCNDLKIGYECLCPDG 57
Query: 934 FKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECESPQACLYGNCTNTLG 993
F+L C DI+EC+ P C C N G
Sbjct: 58 FQLVAQ----RRCEDIDECQDPDTC--------------------------SQLCVNLEG 87
Query: 994 SFSCTCPPNYQLTPAGNAC 1012
+ C C +QL P AC
Sbjct: 88 GYKCQCEEGFQLDPHTKAC 106
Score = 70.1 bits (172), Expect = 1e-14
Identities = 24/136 (17%), Positives = 39/136 (28%), Gaps = 38/136 (27%)
Query: 915 NNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDI 974
+ + + +
Sbjct: 2 KHHHHHHPMSDYDIPTTENLY--------------------------------FQGAMGT 29
Query: 975 NECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCT 1034
NEC C + + C CP +QL C EDI+EC++ + C C
Sbjct: 30 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRR-C---EDIDECQD-PDTCS-QLCV 83
Query: 1035 NTFGSFMCSCQDGFKL 1050
N G + C C++GF+L
Sbjct: 84 NLEGGYKCQCEEGFQL 99
Score = 70.1 bits (172), Expect = 1e-14
Identities = 26/120 (21%), Positives = 37/120 (30%), Gaps = 26/120 (21%)
Query: 720 GKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQG 779
+ M + NEC C
Sbjct: 4 HHHHHPMSDYDIPTTENL----------------------YFQGAMGTNECLDNNGGCS- 40
Query: 780 GECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGGFECTCSEGY 839
C + Y C CP G+ + C D +EC P+ C + C NL GG++C C EG+
Sbjct: 41 YVCNDLKIGYECLCPDGFQLVAQRR-CEDIDEC-QDPDTC-SQLCVNLEGGYKCQCEEGF 97
Score = 63.9 bits (156), Expect = 1e-12
Identities = 24/112 (21%), Positives = 32/112 (28%), Gaps = 20/112 (17%)
Query: 247 GTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADCINNPVN------- 299
+ + + + NEC C C + +
Sbjct: 4 HHHHHPMSDYDIPTTENLY-----FQGAMGTNECLDNNGGCSYV--CNDLKIGYECLCPD 56
Query: 300 ----KTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKEC 347
RC DIDEC CVN G Y C C +G+ L P K C
Sbjct: 57 GFQLVAQRRCEDIDECQDP--DTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 55.8 bits (135), Expect = 1e-09
Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 26/113 (23%)
Query: 699 CPGGSGYRPNSATREGICPSP-----GKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKL 753
P A C C ++ + C CP G++L + C
Sbjct: 15 IPTTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQR-RC------- 66
Query: 754 CPEGVGRGDKGEDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKIC 806
ED++EC P C C+N +G Y+C+C G+ D K C
Sbjct: 67 -----------EDIDECQ-DPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 55.0 bits (133), Expect = 2e-09
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 99 CVCDEGFRGDGYSCEDIDECTDNTNYCDYI-------LLCGSKPGEFMNPMTNKTEEIDE 151
E G +EC DN C Y+ C G + + E+IDE
Sbjct: 15 IPTTENLYFQG--AMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQR-RCEDIDE 71
Query: 152 CNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQC 188
C P+ C+ C+N G + CQC GF D T C
Sbjct: 72 C-QDPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 44.6 bits (106), Expect = 9e-06
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 572 NDCIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKE 624
+ +EC + C + C + + C C G+ L ++ + C D+DEC++
Sbjct: 24 QGAMGTNECLDNNGGC-SYVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQD 74
Score = 36.9 bits (86), Expect = 0.005
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQ 747
C N+ G + C C G++L P +C+
Sbjct: 82 CVNLEGGYKCQCEEGFQLDPHTKACK 107
Score = 35.8 bits (83), Expect = 0.012
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 574 CIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCR 617
C D+DEC+ C + C N G + C+C +G+ L + C+
Sbjct: 66 CEDIDECQDPD-TC-SQLCVNLEGGYKCQCEEGFQLDPHTKACK 107
Score = 32.7 bits (75), Expect = 0.16
Identities = 4/39 (10%), Positives = 12/39 (30%), Gaps = 4/39 (10%)
Query: 588 RNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVN 626
++ + + + + Q +EC + N
Sbjct: 2 KHHHHHHPMSDYDIPTTENL----YFQGAMGTNECLDNN 36
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 73.2 bits (180), Expect = 1e-15
Identities = 34/148 (22%), Positives = 44/148 (29%), Gaps = 39/148 (26%)
Query: 861 DIDECYERPGICANGDCANFQGSFQCTCANGYTLNTA-RDSCVDIDECARHPNICNNGTC 919
+D C+ C Q S+ C CA G+ C P C+
Sbjct: 3 PVDPCFRAN--CEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPN-- 58
Query: 920 VNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECES 979
C C G+ L G CTDI+ECE+
Sbjct: 59 ----TQASCECPEGYILDD-----------------------------GFICTDIDECEN 85
Query: 980 PQACLYGNCTNTLGSFSCTCPPNYQLTP 1007
C G C N G+F C C P+ L
Sbjct: 86 GGFC-SGVCHNLPGTFECICGPDSALAG 112
Score = 72.0 bits (177), Expect = 3e-15
Identities = 34/131 (25%), Positives = 45/131 (34%), Gaps = 21/131 (16%)
Query: 765 EDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTC 824
E ++ C + C+ SY C C G+ + + C N
Sbjct: 2 EPVDPCF--RANCEYQCQPLDQTSYLCVCAEGFAPI-----PHEPHRCQMFCNQTACPAD 54
Query: 825 TNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSF 884
+ N C C EGY C TDIDEC E G C +G C N G+F
Sbjct: 55 CDPNTQASCECPEGYILDDGFIC------------TDIDEC-ENGGFC-SGVCHNLPGTF 100
Query: 885 QCTCANGYTLN 895
+C C L
Sbjct: 101 ECICGPDSALA 111
Score = 65.5 bits (160), Expect = 7e-13
Identities = 31/133 (23%), Positives = 40/133 (30%), Gaps = 21/133 (15%)
Query: 808 DDNECLSIPNICGNGTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYE 867
+ C C + C C+EG+AP P
Sbjct: 3 PVDPCFRAN--CEYQCQPLDQTSYLCVCAEGFAPIPHEPHR----------CQMFCNQTA 50
Query: 868 RPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFK 927
P C C C GY L+ C DIDEC C+ G C N G+F+
Sbjct: 51 CPADCDPN------TQASCECPEGYILDDGF-ICTDIDECEN-GGFCS-GVCHNLPGTFE 101
Query: 928 CHCYAGFKLSHNN 940
C C L+
Sbjct: 102 CICGPDSALAGQI 114
Score = 64.3 bits (157), Expect = 1e-12
Identities = 34/148 (22%), Positives = 40/148 (27%), Gaps = 40/148 (27%)
Query: 903 DIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGN 962
+D C R C S+ C C GF + C
Sbjct: 3 PVDPCFRAN--CEYQCQPLDQTSYLCVCAEGFAPIPHEPH--RCQMFCNQ---------- 48
Query: 963 CTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECE 1022
P C + SC CP Y L G C DI+ECE
Sbjct: 49 --------------TACPADC------DPNTQASCECPEGYILDD-GFIC---TDIDECE 84
Query: 1023 EHDNICENGHCTNTFGSFMCSCQDGFKL 1050
C G C N G+F C C L
Sbjct: 85 N-GGFCS-GVCHNLPGTFECICGPDSAL 110
Score = 63.9 bits (156), Expect = 2e-12
Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 9/119 (7%)
Query: 234 INECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNAD- 292
++ C C + S+ C C +G++ P E C T +CD N
Sbjct: 4 VDPCFRAN--CEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQA 61
Query: 293 ---CINNPVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPS-GKEC 347
C + G C DIDEC G C N GT+ C+C L G +C
Sbjct: 62 SCECPEGYILDDGFICTDIDECENG--GFCSGVCHNLPGTFECICGPDSALAGQIGTDC 118
Score = 62.0 bits (151), Expect = 1e-11
Identities = 29/118 (24%), Positives = 42/118 (35%), Gaps = 26/118 (22%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGGE 781
S++C C G+ P + + C + +
Sbjct: 17 QPLDQTSYLCVCAEGFAPIPH-----------------------EPHRCQMFCNQTACPA 53
Query: 782 CINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGGFECTCSEGY 839
+ + CECP GY+ D+ G IC D +EC C +G C NL G FEC C
Sbjct: 54 DCDPNTQASCECPEGYILDD-GFICTDIDEC-ENGGFC-SGVCHNLPGTFECICGPDS 108
Score = 59.3 bits (144), Expect = 1e-10
Identities = 33/134 (24%), Positives = 43/134 (32%), Gaps = 23/134 (17%)
Query: 147 EEIDECNLMPNMCNHGTCMNTPGSFHCQCNRGF-LYDSDTHQCIDINECEEMPEICGSGT 205
E +D C C + S+ C C GF + H+C P C
Sbjct: 2 EPVDPCF--RANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPN- 58
Query: 206 YINECEEMPEICGSGTCENNIG-----SFSCRYINECEEMPEICGSGTCENNIGSFSCRC 260
+CE G F C I+ECE C SG C N G+F C C
Sbjct: 59 ------------TQASCECPEGYILDDGFICTDIDECEN-GGFC-SGVCHNLPGTFECIC 104
Query: 261 EDGYSVKPAEGPAC 274
++ G C
Sbjct: 105 GPDSALAGQIGTDC 118
Score = 39.7 bits (93), Expect = 6e-04
Identities = 24/93 (25%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 99 CVCDEGFRG---DGYSCEDIDECTDNTNYCDYIL--LCGSKPGEFMNPMTNKT-EEIDEC 152
CVC EGF + + C+ T CD C G ++ +IDEC
Sbjct: 26 CVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCECPEGYILDD--GFICTDIDEC 83
Query: 153 NLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDT 185
C+ C N PG+F C C
Sbjct: 84 -ENGGFCSG-VCHNLPGTFECICGPDSALAGQI 114
Score = 35.0 bits (81), Expect = 0.029
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 573 DCIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVNKRESRC 632
+ C+M + CEC +GY L +G C D+DEC+ C
Sbjct: 35 IPHEPHRCQMFCNQTACPADCDPNTQASCECPEGYIL-DDGFICTDIDECENGGFCSGVC 93
Score = 33.5 bits (77), Expect = 0.080
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 1015 LEDINECEEHDNICENGHCTNTFGSFMCSCQDGFKL 1050
+E ++ C + CE S++C C +GF
Sbjct: 1 VEPVDPCFRAN--CEYQCQPLDQTSYLCVCAEGFAP 34
Score = 32.0 bits (73), Expect = 0.33
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 574 CIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASE 612
C D+DEC +G C N G+F C C LA +
Sbjct: 77 CTDIDECENGG--FCSGVCHNLPGTFECICGPDSALAGQ 113
Score = 31.6 bits (72), Expect = 0.36
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 307 DIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKEC 347
+D C + C D +Y CVC +G+ +P
Sbjct: 3 PVDPCFRA--NCEYQCQPLDQTSYLCVCAEGFAPIPHEPHR 41
Score = 30.8 bits (70), Expect = 0.69
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 576 DLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQY-CRDVDEC 622
+D C C + S+ C C +G+ + C+
Sbjct: 3 PVDPCF--RANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQ 48
Score = 30.8 bits (70), Expect = 0.81
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 720 GKCQNVMGSFICTCPPGYRLSP-DKNSC 746
G C N+ G+F C C P L+ C
Sbjct: 91 GVCHNLPGTFECICGPDSALAGQIGTDC 118
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion;
HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Length = 186
Score = 74.7 bits (182), Expect = 2e-15
Identities = 36/217 (16%), Positives = 56/217 (25%), Gaps = 32/217 (14%)
Query: 808 DDNECLSIPNICGNGTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYE 867
+ +++ IC NG ++ F C C+EG +C +
Sbjct: 2 AEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNE----CXXETLGXACG 57
Query: 868 RPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFK 927
G C + C C GYTL + ++ I S
Sbjct: 58 EFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAG 117
Query: 928 CHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECESPQACLYGN 987
C C G + ++ CT E C N
Sbjct: 118 CSCAIGXVPNPEDE--XXCTXTGETACQLXCNTDN-----------------------EV 152
Query: 988 CTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEH 1024
C N G + C C + N C+ + H
Sbjct: 153 CXNVEGVYXCQCMEGFTFDXEXNVCL---GPHHHHHH 186
Score = 74.7 bits (182), Expect = 2e-15
Identities = 32/196 (16%), Positives = 51/196 (26%), Gaps = 22/196 (11%)
Query: 716 CPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPS 775
G+ + F C C G + + + G G+ G+
Sbjct: 12 ICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQ---------- 61
Query: 776 ACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGGFECTC 835
C Y C C GY E + + + C+C
Sbjct: 62 -CIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSC 120
Query: 836 SEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICA-NGDCANFQGSFQCTCANGYTL 894
+ G P P T E + N C N +G + C C G+T
Sbjct: 121 AIGXVPNPEDE----------XXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTF 170
Query: 895 NTARDSCVDIDECARH 910
+ + C+ H
Sbjct: 171 DXEXNVCLGPHHHHHH 186
Score = 61.2 bits (147), Expect = 1e-10
Identities = 34/188 (18%), Positives = 51/188 (27%), Gaps = 37/188 (19%)
Query: 871 ICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDEC--------ARHPNICNNGTCVNA 922
IC NG F C C G + ++C + +EC C
Sbjct: 12 ICXNGQLVQMSNHFXCMCNEGLVHLS-ENTCEEXNECXXETLGXACGEFGQCIENPDPAQ 70
Query: 923 IGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECESPQA 982
+ + C C G+ L + + C N ES +
Sbjct: 71 VNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECI------------------------ 106
Query: 983 CLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFMC 1042
+ + S C+C P C+ N N C N G + C
Sbjct: 107 ---VEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTD-NEVCXNVEGVYXC 162
Query: 1043 SCQDGFKL 1050
C +GF
Sbjct: 163 QCMEGFTF 170
Score = 57.7 bits (138), Expect = 1e-09
Identities = 37/210 (17%), Positives = 55/210 (26%), Gaps = 39/210 (18%)
Query: 148 EIDECNLMPNM-CNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTY 206
E + + + C +G + F C CN G ++ S+ + C + NEC G +
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSE-NTCEEXNECXXETLGXACGEF 59
Query: 207 INECE-EMPEICGSGTCENNIG------SFSCRYINECEEMPEICGSGTCENNIGSFSCR 259
E P C G + + I S C
Sbjct: 60 GQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCS 119
Query: 260 CEDGYSVKPAEGPACTDENECTMRTHNCDDNADCINNPVNKTGTRCVDIDECATSIQRCG 319
C G P + CT E + DN C N
Sbjct: 120 CAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVE---------------------- 157
Query: 320 EGFCVNDVGTYHCVCPDGYMLLPSGKECID 349
G Y C C +G+ C+
Sbjct: 158 --------GVYXCQCMEGFTFDXEXNVCLG 179
Score = 51.6 bits (122), Expect = 2e-07
Identities = 26/139 (18%), Positives = 34/139 (24%), Gaps = 23/139 (16%)
Query: 912 NICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNC 971
IC NG V F C C G N C + NEC
Sbjct: 11 TICXNGQLVQMSNHFXCMCNEGLVHLSEN----TCEEXNECXXE---------------- 50
Query: 972 TDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENG 1031
T C C+ + + C C Y L + ++
Sbjct: 51 TLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVL---DVCQYXNCGESGECIV 107
Query: 1032 HCTNTFGSFMCSCQDGFKL 1050
+ S CSC G
Sbjct: 108 EYLSEIQSAGCSCAIGXVP 126
Score = 47.7 bits (112), Expect = 3e-06
Identities = 26/168 (15%), Positives = 40/168 (23%), Gaps = 9/168 (5%)
Query: 587 CRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVNKRESRCYLDTEEEEEEEEEE 646
C NG+ F C C +G C + +EC C + E + +
Sbjct: 13 CXNGQLVQMSNHFXCMCNEGLVH-LSENTCEEXNEC-XXETLGXACGEFGQCIENPDPAQ 70
Query: 647 EGGYGG-------GSRRVTCTKEIAGSTTRSTCCCSIGKAWGPQCEECPAVGSDEHKTLC 699
Y + C + Q C
Sbjct: 71 VNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPED 130
Query: 700 PGGSGYRPNSATREGICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQ 747
+A + C NV G + C C G+ + N C
Sbjct: 131 EXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCL 178
Score = 47.3 bits (111), Expect = 5e-06
Identities = 30/184 (16%), Positives = 47/184 (25%), Gaps = 29/184 (15%)
Query: 99 CVCDEGFRGDG-YSCEDIDECTDNTNYCDYILLCGSKPGEFMNPMTNKTEEIDECNLMPN 157
C+C+EG +CE+ +EC T
Sbjct: 27 CMCNEGLVHLSENTCEEXNECXXETL--------------------------GXACGEFG 60
Query: 158 MCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINECEEMPEIC 217
C + C C G+ DT Y++E + C
Sbjct: 61 QCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSC 120
Query: 218 GSGTCENNIGSFSCRYINECEEMPEICG-SGTCENNIGSFSCRCEDGYSVKPAEGPACTD 276
G N C E + C N G + C+C +G++ E C
Sbjct: 121 AIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFD-XEXNVCLG 179
Query: 277 ENEC 280
+
Sbjct: 180 PHHH 183
Score = 46.2 bits (108), Expect = 1e-05
Identities = 21/110 (19%), Positives = 31/110 (28%), Gaps = 12/110 (10%)
Query: 99 CVCDEGFRGDGYSCEDIDECTDNTNYCDYI----------LLCGSKPGEFMNPMTNK-TE 147
C C EG+ +C N C G NP
Sbjct: 76 CGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCT 135
Query: 148 EIDECNLMPNMC-NHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEE 196
E ++ C N G + CQC GF +D + + C+ +
Sbjct: 136 XTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHHHH 185
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/140 (19%), Positives = 37/140 (26%), Gaps = 28/140 (20%)
Query: 243 ICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADCINNPVNKTG 302
IC +G F C C +G +E C + CI NP
Sbjct: 12 ICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENP----- 66
Query: 303 TRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYTDG 362
V Y C C +GY L + C G
Sbjct: 67 --------------------DPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNC---GESG 103
Query: 363 LCSLPMSNEQTRMVCCCSMG 382
C + +E C C++G
Sbjct: 104 ECIVEYLSEIQSAGCSCAIG 123
Score = 35.8 bits (81), Expect = 0.041
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 574 CIDLDECRMMSYLC-RNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDEC 622
C E N C N G + C+C++G+T E C
Sbjct: 134 CTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHH 183
Score = 32.3 bits (72), Expect = 0.57
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 1025 DNICENGHCTNTFGSFMCSCQDGFKL 1050
D IC NG F C C +G
Sbjct: 10 DTICXNGQLVQMSNHFXCMCNEGLVH 35
>1apj_A Fibrillin; microfibril, TB module, marfan syndrome, connective
tissue, novel fold, extracellular matrix; NMR {Homo
sapiens} SCOP: g.23.1.1
Length = 74
Score = 70.7 bits (173), Expect = 3e-15
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 347 CIDMRRELCYLNYTDGLCSLPMSNEQTRMVCCCSM-GQSWGKPCQPCPPPGSRDYILLCG 405
D+R CY + G CS P S ++ CCC++ G+ WG PC+ CP
Sbjct: 2 AQDLRMSYCYAKFEGGKCSSPKSRNHSKQECCCALKGEGWGDPCELCPTEPD-------- 53
Query: 406 KDFAKLCPEGVGRGDKGED 424
+ F ++CP G G +D
Sbjct: 54 EAFRQICPYGSGIIVGPDD 72
Score = 60.6 bits (147), Expect = 9e-12
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 658 TCTKEIAGSTTRSTCCCS-IGKAWGPQCEECPAVGSDEHKTLCPGGSGYRPNS 709
C+ + + ++ CCC+ G+ WG CE CP + + +CP GSG
Sbjct: 18 KCSSPKSRNHSKQECCCALKGEGWGDPCELCPTEPDEAFRQICPYGSGIIVGP 70
Score = 50.2 bits (120), Expect = 5e-08
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 450 QRLGFCYRSLTNGRCVLPTGPALLMEVTRMDCCCTM-GMAWGPQCQLCPTRGSQ 502
R+ +CY G+C P ++ +CCC + G WG C+LCPT +
Sbjct: 5 LRMSYCYAKFEGGKCSSP----KSRNHSKQECCCALKGEGWGDPCELCPTEPDE 54
>1ksq_A Latent transforming growth factor beta binding protein 1;
structure, LTBP-1, TGF-beta, TB domain, latency
associated propeptide, LAP; NMR {Homo sapiens} SCOP:
g.23.1.1
Length = 75
Score = 67.3 bits (164), Expect = 4e-14
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 639 EEEEEEEEEGGYGGGSRRVTCTKEIAGSTTRSTCCCSIGKAWGPQCE--ECPAVGSDEHK 696
++ +EE++ Y + C +A + T+ CCC+ G WG CE CP +G+ E
Sbjct: 2 ADQPKEEKKECYYNLNDASLCDNVLAPNVTKQECCCTSGAGWGDNCEIFPCPVLGTAEFT 61
Query: 697 TLCPGGSGYRPN 708
+CP G G+ P
Sbjct: 62 EMCPKGKGFVPA 73
Score = 51.9 bits (124), Expect = 1e-08
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 343 SGKECIDMRRELCYLNYTDGLCSLPMSNEQTRMVCCCSMGQSWGKPCQ--PCPPPGSRDY 400
S + + ++E Y LC ++ T+ CCC+ G WG C+ PCP G+
Sbjct: 1 SADQPKEEKKECYYNLNDASLCDNVLAPNVTKQECCCTSGAGWGDNCEIFPCPVLGT--- 57
Query: 401 ILLCGKDFAKLCPEGVG 417
+F ++CP+G G
Sbjct: 58 -----AEFTEMCPKGKG 69
Score = 35.3 bits (81), Expect = 0.009
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 453 GFCYRSLT-NGRCVLPTGPALLMEVTRMDCCCTMGMAWGPQCQL--CPTRGS 501
CY +L C P VT+ +CCCT G WG C++ CP G+
Sbjct: 10 KECYYNLNDASLCDNVLAPN----VTKQECCCTSGAGWGDNCEIFPCPVLGT 57
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 70.9 bits (174), Expect = 4e-14
Identities = 36/194 (18%), Positives = 56/194 (28%), Gaps = 24/194 (12%)
Query: 782 CINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGGFECTCSEGYAP 841
+ E D ++C + P G C + G + CTC EG+
Sbjct: 18 SYEEAREVFEDSDKTN---EFWNKYKDGDQCETSP-CQNQGKCKDGLGEYTCTCLEGFE- 72
Query: 842 GPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSC 901
+C + C G C + C Q S C+CA GYTL D+
Sbjct: 73 --GKNCEL----------FTRKLCSLDNGDC-DQFCHEEQNSVVCSCARGYTLA---DNG 116
Query: 902 VDIDECARHPNIC-NNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLY 960
+P C + +G + D++ E+P L
Sbjct: 117 KACIPTGPYP--CGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLD 174
Query: 961 GNCTNTLGSNCTDI 974
N T +
Sbjct: 175 FNQTQPERGDNNLT 188
Score = 62.8 bits (153), Expect = 3e-11
Identities = 30/221 (13%), Positives = 52/221 (23%), Gaps = 47/221 (21%)
Query: 716 CPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPS 775
C + + +D ++C P
Sbjct: 12 CMEETCSYEEAREVFEDSDKTN----EFWNKY-----------------KDGDQCETSPC 50
Query: 776 ACQGGECINTDGSYRCECPAGYVKDETGKIC-IDDNECLSIPNICGNGTCTNLNGGFECT 834
G+C + G Y C C G+ GK C + + S+ N + C C+
Sbjct: 51 QN-QGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCS 105
Query: 835 CSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGD-CANFQGSFQCTCANGYT 893
C+ GY L P C + Q T ++G
Sbjct: 106 CARGYT---LADN-----------GKACIPTGPYP--CGKQTLERRKRSVAQATSSSGEA 149
Query: 894 LNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGF 934
+ + D P N ++ +
Sbjct: 150 PD--SITWKPYDAADLDP-TENPFDLLDFNQTQPERGDNNL 187
Score = 55.1 bits (133), Expect = 1e-08
Identities = 27/155 (17%), Positives = 44/155 (28%), Gaps = 21/155 (13%)
Query: 860 TDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSC-VDIDECARHPNICNNGT 918
D D+C P G C + G + CTC G+ C + + N +
Sbjct: 40 KDGDQCETSPCQN-QGKCKDGLGEYTCTCLEGFEGKN----CELFTRKLCSLDNGDCDQF 94
Query: 919 CVNAIGSFKCHCYAGFKLSH--------------NNDCIGNCTDINECESPQACLYGNCT 964
C S C C G+ L+ + + S + T
Sbjct: 95 CHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSIT 154
Query: 965 NTLGSNCTDINECESPQACLYGNCTNTLGSFSCTC 999
+ D++ E+P L N T +
Sbjct: 155 WKP-YDAADLDPTENPFDLLDFNQTQPERGDNNLT 188
Score = 54.8 bits (132), Expect = 2e-08
Identities = 33/176 (18%), Positives = 45/176 (25%), Gaps = 43/176 (24%)
Query: 720 GKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQG 779
GKC++ +G + CTC G+ G+ + C+L C
Sbjct: 54 GKCKDGLGEYTCTCLEGF--------------------EGKNCELFTRKLCSLDNGDC-D 92
Query: 780 GECINTDGSYRCECPAGYVKDETGKIC-IDDNECLSIPNICGNG-TCTNLNGGFECTCSE 837
C S C C GY T P CG + T S
Sbjct: 93 QFCHEEQNSVVCSCARGY----TLADNGKACIPTGPYP--CGKQTLERRKRSVAQATSSS 146
Query: 838 GYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCANGYT 893
G AP + D P D +F + N T
Sbjct: 147 GEAPDSI-------------TWKPYDAADLDPTEN-PFDLLDFNQTQPERGDNNLT 188
Score = 50.1 bits (120), Expect = 6e-07
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 939 NNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCT 998
+C+ E + TN + D ++CE+ G C + LG ++CT
Sbjct: 9 ERECMEETCSYEEAREVFED--SDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCT 66
Query: 999 CPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFMCSCQDGFKL 1050
C ++ G C + + DN + C S +CSC G+ L
Sbjct: 67 CLEGFE----GKNCEL--FTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTL 112
Score = 46.7 bits (111), Expect = 8e-06
Identities = 23/174 (13%), Positives = 40/174 (22%), Gaps = 40/174 (22%)
Query: 143 TNKTEEIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICG 202
NK ++ D+C P N G C + G + C C GF + + +
Sbjct: 36 WNKYKDGDQCETSP-CQNQGKCKDGLGEYTCTCLEGF---EGKNCELFTRKL-------- 83
Query: 203 SGTYINECEEMPEICGSGTCENNIGSFSC------------RYINECEEMPEICG-SGTC 249
C C C S C + P CG
Sbjct: 84 -------CSLDNGDCD-QFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP--CGKQTLE 133
Query: 250 ENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADCINNPVNKTGT 303
G + + + ++ D ++ +
Sbjct: 134 RRKRSVAQATSSSGEA---PDSITWKPYDAAD--LDPTENPFDLLDFNQTQPER 182
Score = 40.5 bits (95), Expect = 0.001
Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 38/130 (29%)
Query: 221 TCENNIGSFSCRYINECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENEC 280
+ + N + ++CE P G C++ +G ++C C +G+
Sbjct: 29 SDKTNEFWNKYKDGDQCETSPCQNQ-GKCKDGLGEYTCTCLEGF---------------- 71
Query: 281 TMRTHNCDDNADCINNPVNKTGTRC-VDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYM 339
G C + + + + FC + + C C GY
Sbjct: 72 --------------------EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYT 111
Query: 340 LLPSGKECID 349
L +GK CI
Sbjct: 112 LADNGKACIP 121
Score = 39.0 bits (91), Expect = 0.003
Identities = 10/121 (8%), Positives = 23/121 (19%), Gaps = 16/121 (13%)
Query: 148 EIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMP----EICGS 203
+ + N C S C C RG+ + P +
Sbjct: 79 FTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK---ACIPTGPYPCGKQTLERR 135
Query: 204 GTYINECEEMPEICGSGTCENNIGSFSCRYINECEEMPEICGSGTCENNIGSFSCRCEDG 263
+ + + + P + + R ++
Sbjct: 136 KRSVAQATSSSGEAPDSITWKP--------YDAADLDPTENP-FDLLDFNQTQPERGDNN 186
Query: 264 Y 264
Sbjct: 187 L 187
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 70.0 bits (171), Expect = 2e-12
Identities = 62/355 (17%), Positives = 101/355 (28%), Gaps = 78/355 (21%)
Query: 716 CPSPGKCQNVM-GSFICT-CPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALM 773
C +C + GS+ C CP G+ G G EDL+ECAL+
Sbjct: 11 CFPGAQCSSFPDGSWSCGFCPVGFL--------------------GNGTHCEDLDECALV 50
Query: 774 PSACQGG----ECINTDGSYRCE-CPAGYVKD-----------ETGKICIDDNECLSIPN 817
P C C+NT + C CP Y + ++C +N C +
Sbjct: 51 PDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTH 110
Query: 818 ICG-NGTCTNL----NGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGIC 872
C + C L + ++C C GYA L +D+D +C
Sbjct: 111 NCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGED----------SDLDGWPNLNLVC 160
Query: 873 ANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYA 932
A + N + +D D + + + +
Sbjct: 161 ATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQA-- 218
Query: 933 GFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECESPQACLYGNCTNTL 992
++ D +G+ D NC D + AC + +
Sbjct: 219 ----DYDKDEVGDRCD-------------NCPYVHNPAQIDTDNNGEGDACSVDIDGDDV 261
Query: 993 GSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFMCSCQDG 1047
+ CP Y N D + +H + C H + D
Sbjct: 262 FNERDNCPYVY------NTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDLVGDQ 310
Score = 63.1 bits (153), Expect = 3e-10
Identities = 41/255 (16%), Positives = 67/255 (26%), Gaps = 63/255 (24%)
Query: 101 CDEGFRGDGYSCEDIDECTDNTNYCDYILLCGSKPGEFMNPMTNKTEEIDECNLMPNMCN 160
C GF G+G CED+DEC + C +
Sbjct: 30 CPVGFLGNGTHCEDLDECALVPDICF------------------------------STSK 59
Query: 161 HGTCMNTPGSFHC-QCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINECEEMPEICGS 219
C+NT FHC C Y + + + + ++C N C+
Sbjct: 60 VPRCVNTQPGFHCLPCPPR--YRGNQPVGVGLEAAKTEKQVC---EPENPCK-------- 106
Query: 220 GTCENNIGSFSCRYINECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENE 279
+ +C EC + + C C+ GY+ +D +
Sbjct: 107 ------DKTHNCHKHAECIYLGHFS--------DPMYKCECQTGYAGDGLICGEDSDLDG 152
Query: 280 CTMRTHNCDDNADCINN-----PVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVC 334
C NA + +G D D + + V D +
Sbjct: 153 WPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLL 212
Query: 335 PDGYMLLPSGKECID 349
+ E D
Sbjct: 213 FNPRQADYDKDEVGD 227
Score = 60.0 bits (145), Expect = 3e-09
Identities = 49/253 (19%), Positives = 70/253 (27%), Gaps = 36/253 (14%)
Query: 148 EIDECNLMPNMCNHG-TCMNTP-GSFHCQ-CNRGFLYDSDTHQCIDINECEEMPEICGSG 204
+ D C N C G C + P GS+ C C G + + C D++EC +P+IC S
Sbjct: 2 DPDGCL--SNPCFPGAQCSSFPDGSWSCGFCPVG--FLGNGTHCEDLDECALVPDICFST 57
Query: 205 TYINECEEMPEICGSGTCENNIGSFSCRYINECEEMPEICGSGTCENNIGSFSCRCEDGY 264
C N F C C N
Sbjct: 58 ------------SKVPRCVNTQPGFHC----------LPCPPRYRGNQPVGVGLEAAK-- 93
Query: 265 SVKPAEGPACTDENECTMRTHNCDDNADCINNPVNKTGT-RCVDIDECATSIQRCGEGFC 323
E C EN C +THNC +A+CI +C A CGE
Sbjct: 94 ----TEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSD 149
Query: 324 VNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYTDGLCSLPMSNEQTRMVCCCSMGQ 383
++ + VC C + DG+ ++ V
Sbjct: 150 LDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNC 209
Query: 384 SWGKPCQPCPPPG 396
+
Sbjct: 210 QLLFNPRQADYDK 222
Score = 50.8 bits (121), Expect = 2e-06
Identities = 39/163 (23%), Positives = 55/163 (33%), Gaps = 44/163 (26%)
Query: 903 DIDECARHPNIC-NNGTCVN-AIGSFKC-HCYAGFKLSHNNDCIGNCTDINECESPQACL 959
D D C +P C C + GS+ C C GF + + C D++EC
Sbjct: 2 DPDGCLSNP--CFPGAQCSSFPDGSWSCGFCPVGFLGNGTH-----CEDLDECA------ 48
Query: 960 YGNCTNTLGSNCTDINECESPQACLYGNCTNTLGSFSC-TCPPNYQ--------LTPAGN 1010
+ C S C NT F C CPP Y+ L A
Sbjct: 49 ------------LVPDICFSTSKV--PRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKT 94
Query: 1011 ACVVLEDINECEEHDNIC-ENGHCTNTF----GSFMCSCQDGF 1048
V E N C++ + C ++ C + C CQ G+
Sbjct: 95 EKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGY 137
Score = 46.5 bits (110), Expect = 4e-05
Identities = 61/425 (14%), Positives = 103/425 (24%), Gaps = 83/425 (19%)
Query: 588 RNGRCRN-NIGSFFC-ECLQGYTLASEGQYCRDVDECKEVNKRESRCYLDTEEEEEEEEE 645
+C + GS+ C C G+ G +C D+DEC V
Sbjct: 13 PGAQCSSFPDGSWSCGFCPVGFL--GNGTHCEDLDECALVP------------------- 51
Query: 646 EEGGYGGGSRRVTCTKEIAGSTTRSTCCCSIGKAWGPQCEECPAVGSDEHKTLCPGGSGY 705
S+ C G C + G Q + K +C +
Sbjct: 52 --DICFSTSKVPRCVNTQPG----FHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENP- 104
Query: 706 RPNSATREGICPSPGKCQNV----MGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRG 761
+ C +C + + C C GY + D C ED
Sbjct: 105 ---CKDKTHNCHKHAECIYLGHFSDPMYKCECQTGY--AGDGLICGED------------ 147
Query: 762 DKGEDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGN 821
DL+ + C + P +D D + + +
Sbjct: 148 ---SDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTD 204
Query: 822 GTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQ 881
D DE +R C
Sbjct: 205 EKDNCQLLFNPRQA-----------------------DYDKDEVGDRCDNCPYVHNPAQI 241
Query: 882 GSFQCTCANGYTLNTARDSCVD-IDECARHPNICNNGTCVNAIGSFKCHC---YAGFKLS 937
+ + +++ D + D C N T + +G +C + +
Sbjct: 242 DTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTD 301
Query: 938 HNNDCIGNCTDINECESPQACLYGNCTNTLGSN--CTDINECESPQACLYGNCTNTLGSF 995
+ND +G+ D NE SN D + AC + + +
Sbjct: 302 VDNDLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDRDGQGDACDPDDDNDGVPDD 361
Query: 996 SCTCP 1000
C
Sbjct: 362 RDNCR 366
Score = 45.0 bits (106), Expect = 1e-04
Identities = 26/217 (11%), Positives = 57/217 (26%), Gaps = 8/217 (3%)
Query: 99 CVCDEGFRGDGYSC---EDIDECTDNTNYCDYILLCGSKPGEFMNPMTNKTEEIDECNLM 155
C C G+ GDG C D+D + C + + E+ D+ +
Sbjct: 131 CECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIG 190
Query: 156 PNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINECEEMPE 215
+ +D + + C+ P + + +
Sbjct: 191 DACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGD 250
Query: 216 ICGSGTCENNIGSFSCRYINECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACT 275
C +++ + C + T + +G C ++ +
Sbjct: 251 ACSVDIDGDDV----FNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDL 306
Query: 276 DENECTMRTHNCDDN-ADCINNPVNKTGTRCVDIDEC 311
++C DD + +N + D D
Sbjct: 307 VGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDRD 343
Score = 43.9 bits (103), Expect = 3e-04
Identities = 29/243 (11%), Positives = 59/243 (24%), Gaps = 36/243 (14%)
Query: 99 CVCDEGFRGDGYSCEDIDECTDNTNYCDYILLCGSKPGEFMNPMTNKTEEIDECNLMPNM 158
V E + + CE + C D T+ C C
Sbjct: 86 GVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGH---------------------- 123
Query: 159 CNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINECEEMPEICG 218
+ + C+C G Y D C + ++ + P + + + C
Sbjct: 124 -------FSDPMYKCECQTG--YAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCP 174
Query: 219 SGTCENNIGSFSCRYINECEEMP--EICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTD 276
+ C++ + + + + C
Sbjct: 175 HLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPY 234
Query: 277 ENECTMRTHNCDDNADCINNPVNKTGTRCVD-IDECATSIQRCGEGFCVNDVGTYHCVCP 335
+ + D+N + V+ G + D C + VG + CP
Sbjct: 235 VHNPA--QIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCP 292
Query: 336 DGY 338
+
Sbjct: 293 LVH 295
Score = 37.3 bits (86), Expect = 0.028
Identities = 54/361 (14%), Positives = 89/361 (24%), Gaps = 48/361 (13%)
Query: 574 CIDLDECRMMSYLCRNG----RCRNNIGSFFCE-CLQGYT-----------LASEGQYCR 617
C DLDEC ++ +C + RC N F C C Y +E Q C
Sbjct: 41 CEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCE 100
Query: 618 DVDECKEVNKRESRCYLDTEEEEEEEEEEEGGYGGGSRRVTCTKEIAGSTTRSTCCCSIG 677
+ CK+ C+ E G + + C AG S
Sbjct: 101 PENPCKDKT---HNCHKHA------ECIYLGHFSDPMYKCECQTGYAG-DGLICGEDSDL 150
Query: 678 KAWGPQCEECPAVGSDEHKTLCPGGSGYRPNSATREGICPSPGKCQNVMGSFICTCPPGY 737
W C + + + +
Sbjct: 151 DGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIG-DACDDDDDNDGVTDEKDNC 209
Query: 738 RLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGGECINTDGSYRCECPAGY 797
+L + D GD+ ++ C + + Q N +G G
Sbjct: 210 QLLFNPRQADYD-------KDEVGDRCDN---CPYVHNPAQIDTDNNGEGDACSVDIDGD 259
Query: 798 VKDETGKICIDDNECLSIPNICGNGTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPIS 857
+ + + C + N T + G C + P L +
Sbjct: 260 D------VFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDL-----VG 308
Query: 858 PSTDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNG 917
D +E + G N D + + + A D D D + C
Sbjct: 309 DQCDNNEDIDDDGHQNNQDNCPYISNANQADHDRDGQGDACDPDDDNDGVPDDRDNCRLV 368
Query: 918 T 918
Sbjct: 369 F 369
Score = 36.5 bits (84), Expect = 0.048
Identities = 41/253 (16%), Positives = 67/253 (26%), Gaps = 26/253 (10%)
Query: 276 DENECTMRTHNCDDNADCINNPV------------NKTGTRCVDIDECATSIQRCGEGF- 322
D + C ++ C A C + P GT C D+DECA C
Sbjct: 2 DPDGCL--SNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSK 59
Query: 323 ---CVNDVGTYHC-VCPDGYMLLPSGKECIDMRRELCYLNYTDGLCSLPMSNEQTRMVCC 378
CVN +HC CP Y ++ + + + C N C
Sbjct: 60 VPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECI 119
Query: 379 CSMGQSWGKPCQPCPPPGSRDYILLCGKDFAKLCPEGVGRGDKGEDLNECRTVITVRDSY 438
S C G L+CG+D + G + T ++D+
Sbjct: 120 YLGHFSDPMYKCECQT-GYAGDGLICGEDS-----DLDGWPNLNLVCATNATYHCIKDNC 173
Query: 439 -FTEQWRDAKKNQRLGFCYRSLTNGRCVLPTGPALLMEVTRMDCCCTMGMAWGPQCQLCP 497
++ + + + G +C CP
Sbjct: 174 PHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCP 233
Query: 498 TRGSQTCEDINEC 510
+ D +
Sbjct: 234 YVHNPAQIDTDNN 246
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 58.5 bits (142), Expect = 3e-10
Identities = 25/124 (20%), Positives = 34/124 (27%), Gaps = 21/124 (16%)
Query: 754 CPEGVGRGDKGEDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECL 813
+ + D ++C P GG C + SY C C G+ GK C D C
Sbjct: 35 TEKTNEFWKQYVDGDQCEPNP-CLNGGLCKDDINSYECWCQVGF----EGKNCELDATCN 89
Query: 814 SIPNICGNGTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICA 873
C T + C+C+ GY L P C
Sbjct: 90 IKNGRCKQFCKTGADSKVLCSCTTGYR---LAPD-----------QKSCKPAVPFP--CG 133
Query: 874 NGDC 877
Sbjct: 134 RVSV 137
Score = 58.5 bits (142), Expect = 4e-10
Identities = 28/152 (18%), Positives = 43/152 (28%), Gaps = 28/152 (18%)
Query: 780 GECINTDGSYRCECPAGYVKDETG---KICIDDNECLSIPNICGN-GTCTNLNGGFECTC 835
ECI S+ ++T K +D ++C P C N G C + +EC C
Sbjct: 16 RECIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNP--CLNGGLCKDDINSYECWC 73
Query: 836 SEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCANGYTLN 895
G+ G C D + C C+C GY L
Sbjct: 74 QVGFE-GKN--C-----------ELDATCNIKNGR-CKQFCKTGADSKVLCSCTTGYRL- 117
Query: 896 TARDSC-VDIDECARHPNICNNGTCVNAIGSF 926
P C + ++ +
Sbjct: 118 ---APDQKSCKPAVPFP--CGRVSVSHSPTTL 144
Score = 52.7 bits (127), Expect = 4e-08
Identities = 31/166 (18%), Positives = 46/166 (27%), Gaps = 45/166 (27%)
Query: 875 GDCANFQGSFQCTC---ANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCY 931
+C + SF+ N N VD D+C +P N G C + I S++C C
Sbjct: 16 RECIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNP-CLNGGLCKDDINSYECWCQ 74
Query: 932 AGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNC-TDINECESPQACLYGNCTN 990
GF+ G NC D C T
Sbjct: 75 VGFE--------------------------------GKNCELDATCNIKNGRCKQFCKTG 102
Query: 991 TLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNT 1036
C+C Y+L P + C +++
Sbjct: 103 ADSKVLCSCTTGYRLAPDQ------KSCKPAVP--FPCGRVSVSHS 140
Score = 52.7 bits (127), Expect = 4e-08
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 14/111 (12%)
Query: 860 TDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSC-VDIDECARHPNICNNGT 918
D D+C P + G C + S++C C G+ C +D ++ C
Sbjct: 46 VDGDQCEPNPCLN-GGLCKDDINSYECWCQVGFEGKN----CELDATCNIKNGR-CKQFC 99
Query: 919 CVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGS 969
A C C G++L+ + C + +++ +
Sbjct: 100 KTGADSKVLCSCTTGYRLAPDQ------KSCKPAVP-FPCGRVSVSHSPTT 143
Score = 48.1 bits (115), Expect = 1e-06
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 964 TNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEE 1023
TN D ++CE G C + + S+ C C ++ G C E C
Sbjct: 38 TNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFE----GKNC---ELDATCNI 90
Query: 1024 HDNICENGHCTNTFGSFMCSCQDGFKL 1050
+ C+ T +CSC G++L
Sbjct: 91 KNGRCKQFCKTGADSKVLCSCTTGYRL 117
Score = 44.3 bits (105), Expect = 3e-05
Identities = 19/110 (17%), Positives = 29/110 (26%), Gaps = 29/110 (26%)
Query: 716 CPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPS 775
C + G C++ + S+ C C G+ G E C +
Sbjct: 56 CLNGGLCKDDINSYECWCQVGF----------------------EGKNCELDATCNIKNG 93
Query: 776 ACQGGECINTDGSYRCECPAGYVKDETGKIC-IDDNECLSIPNICGNGTC 824
C+ D C C GY + P CG +
Sbjct: 94 RCKQFCKTGADSKVLCSCTTGY----RLAPDQKSCKPAVPFP--CGRVSV 137
Score = 39.3 bits (92), Expect = 0.001
Identities = 20/119 (16%), Positives = 31/119 (26%), Gaps = 33/119 (27%)
Query: 162 GTCMNTPGSFHCQCNRGFLYDS---DTHQCIDINECEEMPEICGSGTYINECEEMPEICG 218
C+ SF + Q +D ++CE P C +G
Sbjct: 16 RECIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNP--CLNG-------------- 59
Query: 219 SGTCENNIGSFSC------------RYINECEEMPEICGSGTCENNIGSFSCRCEDGYS 265
G C+++I S+ C + C C C GY
Sbjct: 60 -GLCKDDINSYECWCQVGFEGKNCELDATCNIKNGR-CKQFCKTGADSKVLCSCTTGYR 116
Score = 38.9 bits (91), Expect = 0.002
Identities = 23/113 (20%), Positives = 32/113 (28%), Gaps = 12/113 (10%)
Query: 247 GTCENNIGSFSCRCEDGYSVKPA-EGPAC-TDENECTMRTHNCDDNADCINN-------- 296
C SF E + + E D ++C + C + C ++
Sbjct: 16 RECIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCE--PNPCLNGGLCKDDINSYECWC 73
Query: 297 PVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECID 349
V G C C RC + C C GY L P K C
Sbjct: 74 QVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKP 126
Score = 32.3 bits (74), Expect = 0.35
Identities = 9/52 (17%), Positives = 11/52 (21%), Gaps = 3/52 (5%)
Query: 147 EEIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMP 198
E CN+ C C C G+ D P
Sbjct: 83 ELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQ---KSCKPAVPFP 131
Score = 31.6 bits (72), Expect = 0.60
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 978 ESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNA-CVVLEDINECEEHDNICEN-GHCTN 1035
E + L C SF ++ T N D ++CE N C N G C +
Sbjct: 8 EFVRGNLERECIEEKCSFEEAR-EVFENTEKTNEFWKQYVDGDQCE--PNPCLNGGLCKD 64
Query: 1036 TFGSFMCSCQDGF 1048
S+ C CQ GF
Sbjct: 65 DINSYECWCQVGF 77
Score = 28.5 bits (64), Expect = 5.7
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 574 CIDLDECRMMSYLCRN-GRCRNNIGSFFCECLQGYTLASEGQYC-RDVDEC 622
+D D+C C N G C+++I S+ C C G+ G+ C D
Sbjct: 45 YVDGDQCE--PNPCLNGGLCKDDINSYECWCQVGFE----GKNCELDATCN 89
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 57.4 bits (139), Expect = 4e-10
Identities = 26/110 (23%), Positives = 36/110 (32%), Gaps = 20/110 (18%)
Query: 806 CIDDNECLSIP-------NICGNGTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISP 858
+D ++CL +P CG+GTC + G F C C G+
Sbjct: 3 HVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGW------------EGRFCQR 50
Query: 859 STDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECA 908
C G C C G +C+CA GY L C +
Sbjct: 51 EVSFLNCSLDNGGC-THYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFP 99
Score = 53.2 bits (128), Expect = 1e-08
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 761 GDKGEDLNECALMPSACQ-GGECINTDGSYRCECPAGYVKDETGKIC---IDDNECLSIP 816
GD+ L S C G CI+ GS+ C+C +G+ G+ C + C
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGW----EGRFCQREVSFLNCSLDN 61
Query: 817 NICGNGTCTNLNGGFECTCSEGY 839
C C G C+C+ GY
Sbjct: 62 GGCT-HYCLEEVGWRRCSCAPGY 83
Score = 52.4 bits (126), Expect = 2e-08
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 969 SNCTDINECESPQA--------CLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINE 1020
S D ++C C +G C + +GSFSC C ++ G C
Sbjct: 1 SKHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWE----GRFCQREVSFLN 56
Query: 1021 CEEHDNICENGHCTNTFGSFMCSCQDGFKL 1050
C + C +C G CSC G+KL
Sbjct: 57 CSLDNGGCT-HYCLEEVGWRRCSCAPGYKL 85
Score = 50.5 bits (121), Expect = 1e-07
Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 42/130 (32%)
Query: 901 CVDIDECARHP-------NICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECE 953
VD D+C P C +GTC++ IGSF C C +G++ +++
Sbjct: 3 HVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQ------REVSFLN 56
Query: 954 SPQACLYGNCTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACV 1013
C N T C +G C+C P Y+L
Sbjct: 57 ----CSLDNGGCT-------------------HYCLEEVGWRRCSCAPGYKLGDDL---- 89
Query: 1014 VLEDINECEE 1023
+ +
Sbjct: 90 --LQCHPAVK 97
Score = 47.4 bits (113), Expect = 1e-06
Identities = 30/115 (26%), Positives = 37/115 (32%), Gaps = 34/115 (29%)
Query: 235 NECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADCI 294
E CG GTC + IGSFSC C G+ EG C
Sbjct: 14 LEHPCASLCCGHGTCIDGIGSFSCDCRSGW-----EGRFC-------------------- 48
Query: 295 NNPVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECID 349
R V C+ C +C+ +VG C C GY L +C
Sbjct: 49 --------QREVSFLNCSLDNGGCT-HYCLEEVGWRRCSCAPGYKLGDDLLQCHP 94
Score = 38.2 bits (89), Expect = 0.002
Identities = 17/82 (20%), Positives = 22/82 (26%), Gaps = 18/82 (21%)
Query: 150 DECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINE 209
E C HGTC++ GSF C C G+ + C C
Sbjct: 14 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQR-EVSFLNCSLDNGGCT------- 65
Query: 210 CEEMPEICGSGTCENNIGSFSC 231
C +G C
Sbjct: 66 ----------HYCLEEVGWRRC 77
Score = 37.0 bits (86), Expect = 0.004
Identities = 19/95 (20%), Positives = 26/95 (27%), Gaps = 9/95 (9%)
Query: 108 DGYSCEDIDECTDNTNYCDYILLCGSKPGEFM--------NPMTNKTEEIDECNLMPNMC 159
DG C + + C C G F + C+L C
Sbjct: 5 DGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGC 64
Query: 160 NHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINEC 194
H C+ G C C G+ D QC +
Sbjct: 65 TH-YCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 98
Score = 35.5 bits (82), Expect = 0.018
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 574 CIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDEC 622
+ C + + C C +G C C GY L + C +
Sbjct: 51 EVSFLNCSLDNGGC-THYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 98
Score = 33.1 bits (76), Expect = 0.11
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 716 CPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQE 748
C +G C+C PGY+L D C
Sbjct: 62 GGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHP 94
Score = 32.8 bits (75), Expect = 0.16
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 571 INDCIDLDECRMMSYLCRN-GRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVN 626
+ C+ L + LC G C + IGSF C+C G+ Q C N
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRF-CQREVSFLNCSLDN 61
Score = 32.4 bits (74), Expect = 0.19
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 303 TRCVDIDECATSIQR-------CGEGFCVNDVGTYHCVCPDGY 338
++ VD D+C CG G C++ +G++ C C G+
Sbjct: 1 SKHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGW 43
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 57.7 bits (140), Expect = 5e-10
Identities = 29/142 (20%), Positives = 40/142 (28%), Gaps = 24/142 (16%)
Query: 779 GGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGGFECTCSEG 838
+ E D ++C + P G C + G + CTC EG
Sbjct: 15 ETCSYEEAREVFEDSDKTN---EFWNKYKDGDQCETSP-CQNQGKCKDGLGEYTCTCLEG 70
Query: 839 YAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTAR 898
+ G C G C + C Q S C+CA GYTL
Sbjct: 71 FE-GKNCELFT------------RKLCSLDNGDC-DQFCHEEQNSVVCSCARGYTL---A 113
Query: 899 DSCVDIDECARHPNIC-NNGTC 919
D+ +P C
Sbjct: 114 DNGKACIPTGPYP--CGKQTLE 133
Score = 55.8 bits (135), Expect = 2e-09
Identities = 21/135 (15%), Positives = 33/135 (24%), Gaps = 26/135 (19%)
Query: 821 NGTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICAN-GDCAN 879
+ D D+C P C N G C +
Sbjct: 15 ETCSYEEAREVFEDSDKTNEFWNK--------------YKDGDQCETSP--CQNQGKCKD 58
Query: 880 FQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHN 939
G + CTC G+ ++ + + N + C S C C G+ L+ N
Sbjct: 59 GLGEYTCTCLEGFE---GKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADN 115
Query: 940 NDCIGNCTDINECES 954
Sbjct: 116 G------KACIPTGP 124
Score = 54.2 bits (131), Expect = 8e-09
Identities = 26/124 (20%), Positives = 40/124 (32%), Gaps = 24/124 (19%)
Query: 754 CPEGVGRGDKGEDLNECALMPSACQ-GGECINTDGSYRCECPAGYVKDETGKIC-IDDNE 811
+ +K +D ++C P CQ G+C + G Y C C G+ GK C + +
Sbjct: 29 SDKTNEFWNKYKDGDQCETSP--CQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRK 82
Query: 812 CLSIPNICGNGTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGI 871
S+ N + C C+C+ GY L P
Sbjct: 83 LCSLDNGDCDQFCHEEQNSVVCSCARGYT---LADN-----------GKACIPTGPYP-- 126
Query: 872 CANG 875
C
Sbjct: 127 CGKQ 130
Score = 50.8 bits (122), Expect = 1e-07
Identities = 24/160 (15%), Positives = 33/160 (20%), Gaps = 46/160 (28%)
Query: 874 NGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAG 933
+ D D+C P N G C + +G + C C G
Sbjct: 15 ETCSYEEAREVFEDSDKTNE---FWNKYKDGDQCETSP-CQNQGKCKDGLGEYTCTCLEG 70
Query: 934 FKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNC-TDINECESPQACLY-GNCTNT 991
F+ G NC + S C
Sbjct: 71 FE--------------------------------GKNCELFTRKLCSLDNGDCDQFCHEE 98
Query: 992 LGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENG 1031
S C+C Y L G + C
Sbjct: 99 QNSVVCSCARGYTLADNG------KACIPTGP--YPCGKQ 130
Score = 49.2 bits (118), Expect = 4e-07
Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 8/112 (7%)
Query: 939 NNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCT 998
+C+ E TN + D ++CE+ G C + LG ++CT
Sbjct: 9 ERECMEETCSYEEAREVFEDSD--KTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCT 66
Query: 999 CPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFMCSCQDGFKL 1050
C ++ G C + DN + C S +CSC G+ L
Sbjct: 67 CLEGFE----GKNCE--LFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTL 112
Score = 42.7 bits (101), Expect = 7e-05
Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 38/130 (29%)
Query: 221 TCENNIGSFSCRYINECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENEC 280
+ + N + ++CE P G C++ +G ++C C +G+
Sbjct: 29 SDKTNEFWNKYKDGDQCETSP-CQNQGKCKDGLGEYTCTCLEGF---------------- 71
Query: 281 TMRTHNCDDNADCINNPVNKTGTRC-VDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYM 339
G C + + + + FC + + C C GY
Sbjct: 72 --------------------EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYT 111
Query: 340 LLPSGKECID 349
L +GK CI
Sbjct: 112 LADNGKACIP 121
Score = 37.7 bits (88), Expect = 0.005
Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 20/89 (22%)
Query: 143 TNKTEEIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICG 202
NK ++ D+C P N G C + G + C C GF + + +
Sbjct: 36 WNKYKDGDQCETSP-CQNQGKCKDGLGEYTCTCLEGF---EGKNCELFTRKL-------- 83
Query: 203 SGTYINECEEMPEICGSGTCENNIGSFSC 231
C C C S C
Sbjct: 84 -------CSLDNGDCD-QFCHEEQNSVVC 104
Score = 32.3 bits (74), Expect = 0.26
Identities = 17/106 (16%), Positives = 26/106 (24%), Gaps = 12/106 (11%)
Query: 99 CVCDEGFRGDGYSCEDIDECTDNTNYCDYILLCGSKPGEFM---NPM---TNKTEEIDEC 152
D+ +D D+C + C C GE+ N +
Sbjct: 27 EDSDKTNEF-WNKYKDGDQCETSP--CQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKL 83
Query: 153 NLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMP 198
+ N C S C C RG+ + P
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADN---GKACIPTGPYP 126
Score = 30.7 bits (70), Expect = 1.1
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 574 CIDLDECRMMSYLCRN-GRCRNNIGSFFCECLQGYTLASEGQYC-RDVDEC 622
D D+C + C+N G+C++ +G + C CL+G+ G+ C +
Sbjct: 39 YKDGDQCE--TSPCQNQGKCKDGLGEYTCTCLEGFE----GKNCELFTRKL 83
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 57.3 bits (139), Expect = 7e-10
Identities = 24/149 (16%), Positives = 40/149 (26%), Gaps = 29/149 (19%)
Query: 777 CQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGGFECTCS 836
C+ +C + + D ++C S P G+C + + C C
Sbjct: 17 CKEEQCSFEEAREIFKDAERT--KLFWISYSDGDQCASSP-CQNGGSCKDQLQSYICFCL 73
Query: 837 EGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANF-----QGSFQCTCANG 891
+ +C T D+ NG C + C C G
Sbjct: 74 PAFE---GRNC-----------ETHKDDQLICV--NENGGCEQYCSDHTGTKRSCRCHEG 117
Query: 892 YTLNTARDSCVDIDECARHPNICNNGTCV 920
Y+L V +P C +
Sbjct: 118 YSLLADG---VSCTPTVEYP--CGKIPIL 141
Score = 51.2 bits (123), Expect = 1e-07
Identities = 28/131 (21%), Positives = 38/131 (29%), Gaps = 31/131 (23%)
Query: 754 CPEGVGRGDKGEDLNECALMPSACQ-GGECINTDGSYRCECPAGYVKDETGKIC-IDDNE 811
D ++CA P CQ GG C + SY C C + G+ C ++
Sbjct: 34 AERTKLFWISYSDGDQCASSP--CQNGGSCKDQLQSYICFCLPAF----EGRNCETHKDD 87
Query: 812 CLSIPNICGNGTCT-----NLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECY 866
L NG C + C C EGY+ L +
Sbjct: 88 QLICV--NENGGCEQYCSDHTGTKRSCRCHEGYS---LLAD-----------GVSCTPTV 131
Query: 867 ERPGICANGDC 877
E P C
Sbjct: 132 EYP--CGKIPI 140
Score = 50.0 bits (120), Expect = 2e-07
Identities = 30/164 (18%), Positives = 44/164 (26%), Gaps = 42/164 (25%)
Query: 872 CANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCY 931
C C+ + S D D+CA P N G+C + + S+ C C
Sbjct: 17 CKEEQCSFEEAREIFKD--AERTKLFWISYSDGDQCASSP-CQNGGSCKDQLQSYICFCL 73
Query: 932 AGFKLSHNNDCIGNC-TDINECESPQACLYGNCTNTLGSNCTDINECESPQACLYGNCTN 990
F+ NC T ++ G C C++
Sbjct: 74 PAFEGR-------NCETHKDDQLI-CVNENGGCEQY---------------------CSD 104
Query: 991 TLGS-FSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHC 1033
G+ SC C Y L G E+ C
Sbjct: 105 HTGTKRSCRCHEGYSLLADG------VSCTPTVEYP--CGKIPI 140
Score = 47.3 bits (113), Expect = 3e-06
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
Query: 964 TNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEE 1023
T + +D ++C S G+C + L S+ C C P ++ G C ++
Sbjct: 37 TKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFE----GRNC--ETHKDDQ-- 88
Query: 1024 HDNICENGHCTNT-----FGSFMCSCQDGFKL 1050
+ ENG C C C +G+ L
Sbjct: 89 LICVNENGGCEQYCSDHTGTKRSCRCHEGYSL 120
Score = 39.6 bits (93), Expect = 0.001
Identities = 18/108 (16%), Positives = 29/108 (26%), Gaps = 9/108 (8%)
Query: 143 TNKTEEIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICG 202
+ D+C P N G+C + S+ C C F + ++
Sbjct: 41 WISYSDGDQCASSP-CQNGGSCKDQLQSYICFCLPAF---EGRNCETHKDDQLICV--NE 94
Query: 203 SGTYINECEEMPEICGSGTCENNIGSFSCRY-INECEEMPEICGSGTC 249
+G C + S C + E P CG
Sbjct: 95 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYP--CGKIPI 140
Score = 38.5 bits (90), Expect = 0.002
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 21/126 (16%)
Query: 211 EEMPEICGSGTCENNIGSFSCRYINECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAE 270
EE EI + S ++C P G+C++ + S+ C C + E
Sbjct: 25 EEAREIFKD-AERTKLFWISYSDGDQCASSP-CQNGGSCKDQLQSYICFCLPAF-----E 77
Query: 271 GPAC-TDENECT-MRTHNCDDNADCINNPVNK---------TGTRC-VDIDECATSIQRC 318
G C T +++ N C ++ K + V C
Sbjct: 78 GRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY--PC 135
Query: 319 GEGFCV 324
G+ +
Sbjct: 136 GKIPIL 141
Score = 37.3 bits (87), Expect = 0.006
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 35/111 (31%)
Query: 720 GKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQG 779
G C++ + S+IC C P + +C+ ++ + +
Sbjct: 59 GSCKDQLQSYICFCLPAFEG----RNCE-----------------THKDDQLICV--NEN 95
Query: 780 GECINT-----DGSYRCECPAGYVKDETGKIC-IDDNECLSIPNICGNGTC 824
G C C C GY + + + P CG
Sbjct: 96 GGCEQYCSDHTGTKRSCRCHEGY----SLLADGVSCTPTVEYP--CGKIPI 140
Score = 33.8 bits (78), Expect = 0.087
Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 16/126 (12%)
Query: 238 EEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEG--PACTDENECTMRTHNCDDNADCIN 295
EE+ C+ SF E + + + +D ++C + C + C +
Sbjct: 6 EELRPGSLERECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCA--SSPCQNGGSCKD 63
Query: 296 N--------PVNKTGTRC-VDIDECATSIQRCG--EGFCVNDVGT-YHCVCPDGYMLLPS 343
G C D+ + G E +C + GT C C +GY LL
Sbjct: 64 QLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLAD 123
Query: 344 GKECID 349
G C
Sbjct: 124 GVSCTP 129
Score = 32.3 bits (74), Expect = 0.33
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 574 CIDLDECRMMSYLCRN-GRCRNNIGSFFCECLQGYTLASEGQYC-RDVDECKE 624
D D+C S C+N G C++ + S+ C CL + G+ C D+
Sbjct: 44 YSDGDQC--ASSPCQNGGSCKDQLQSYICFCLPAFE----GRNCETHKDDQLI 90
Score = 30.0 bits (68), Expect = 2.0
Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 978 ESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICEN-GHCTNT 1036
E L C SF + D ++C + C+N G C +
Sbjct: 7 ELRPGSLERECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQCA--SSPCQNGGSCKDQ 64
Query: 1037 FGSFMCSCQDGF 1048
S++C C F
Sbjct: 65 LQSYICFCLPAF 76
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 60.9 bits (147), Expect = 9e-10
Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 3/126 (2%)
Query: 860 TDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTC 919
T + C G CA C +G+ QCTC GY L +C D++ECA + C
Sbjct: 1 TGEENCNVNNGGCAQ-KCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYC--SQGC 57
Query: 920 VNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECES 979
N+ G+F+C C AG++L + +N E+
Sbjct: 58 TNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLEN 117
Query: 980 PQACLY 985
A +
Sbjct: 118 AIALDF 123
Score = 57.5 bits (138), Expect = 1e-08
Identities = 23/147 (15%), Positives = 43/147 (29%), Gaps = 6/147 (4%)
Query: 149 IDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPE-----ICGS 203
+ CN+ C C G+ C C+ G+ D C D+NEC E
Sbjct: 3 EENCNVNNGGCAQ-KCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSE 61
Query: 204 GTYINECEEMPEICGSGTCENNIGSFSCRYINECEEMPEICGSGTCENNIGSFSCRCEDG 263
G + CE E+ +G ++ ++ + + +
Sbjct: 62 GAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIAL 121
Query: 264 YSVKPAEGPACTDENECTMRTHNCDDN 290
E +D + N + +
Sbjct: 122 DFHHRRELVFWSDVTLDRILRANLNGS 148
Score = 57.1 bits (137), Expect = 1e-08
Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 30/143 (20%)
Query: 903 DIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGN 962
+ C + C C G+ +C C+ G++L+ +
Sbjct: 2 GEENCNVNNGGCAQ-KCQMIRGAVQCTCHTGYRLTEDGRT-------------------- 40
Query: 963 CTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECE 1022
C D+NEC C CTN+ G+F C C Y+L P +C L
Sbjct: 41 --------CQDVNECAEEGYC-SQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLL 91
Query: 1023 EHDNICENGHCTNTFGSFMCSCQ 1045
+ I + +
Sbjct: 92 FANRIDIRQVLPHRSEYTLLLNN 114
Score = 56.7 bits (136), Expect = 2e-08
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 766 DLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCT 825
C + C +C G+ +C C GY E G+ C D NEC + C G CT
Sbjct: 2 GEENCNVNNGGCAQ-KCQMIRGAVQCTCHTGYRLTEDGRTCQDVNEC-AEEGYCSQG-CT 58
Query: 826 NLNGGFECTCSEGYAPGP 843
N G F+C C GY P
Sbjct: 59 NSEGAFQCWCEAGYELRP 76
Score = 53.6 bits (128), Expect = 2e-07
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 972 TDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENG 1031
T C C G+ CTC Y+LT G C +D+NEC E C
Sbjct: 1 TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTC---QDVNECAEEGY-CSQ- 55
Query: 1032 HCTNTFGSFMCSCQDGFKL 1050
CTN+ G+F C C+ G++L
Sbjct: 56 GCTNSEGAFQCWCEAGYEL 74
Score = 47.5 bits (112), Expect = 2e-05
Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 20/115 (17%)
Query: 721 KCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGG 780
KCQ + G+ CTC GYRL+ D +CQ+ NECA C G
Sbjct: 16 KCQMIRGAVQCTCHTGYRLTEDGRTCQDV------------------NECA-EEGYCSQG 56
Query: 781 ECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGGFECTC 835
C N++G+++C C AGY + C + L E T
Sbjct: 57 -CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTL 110
Score = 44.8 bits (105), Expect = 1e-04
Identities = 27/160 (16%), Positives = 42/160 (26%), Gaps = 35/160 (21%)
Query: 234 INECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADC 293
C C + C+ G+ C C GY + +G C D NEC + C
Sbjct: 3 EENCNVNNGGC-AQKCQMIRGAVQCTCHTGYRLTE-DGRTCQDVNEC-------AEEGYC 53
Query: 294 INNPVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRE 353
C N G + C C GY L P + C + E
Sbjct: 54 --------------------------SQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPE 87
Query: 354 LCYLNYTDGLCSLPMSNEQTRMVCCCSMGQSWGKPCQPCP 393
L + + + ++ +
Sbjct: 88 PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRR 127
Score = 41.7 bits (97), Expect = 0.001
Identities = 28/179 (15%), Positives = 39/179 (21%), Gaps = 38/179 (21%)
Query: 92 DNVITRWCVCDEGFR--GDGYSCEDIDECTDNTNYCDYILLCGSKPGEFMNPMTNKTEEI 149
C C G+R DG +C+D++EC + YC
Sbjct: 19 MIRGAVQCTCHTGYRLTEDGRTCQDVNECAEE-GYCSQG--------------------- 56
Query: 150 DECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINE 209
C N+ G+F C C G+ D C + +
Sbjct: 57 --------------CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVL 102
Query: 210 CEEMPEICGSGTCENNIGSFSCRYINECEEMPEICGSGTCENNIGSFSCRCEDGYSVKP 268
EN I N GS P
Sbjct: 103 PHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP 161
Score = 39.4 bits (91), Expect = 0.006
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 576 DLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVNKRESRCY 633
+ C + + C +C+ G+ C C GY L +G+ C+DV+EC E C
Sbjct: 2 GEENCNVNNGGC-AQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCT 58
Score = 31.7 bits (71), Expect = 1.2
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 907 CARHPNICNNGT----CVNAIGSFKCHCYAGFKLSHNNDCI 943
++ NNG C+ + ++ C C GF+ +++ C
Sbjct: 345 AGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSHACA 385
Score = 30.5 bits (68), Expect = 2.9
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 320 EGFCVNDVGTYHCVCPDGYMLLPSGKECI 348
C+ Y C CP G+ + + C
Sbjct: 358 THLCLPSGQNYTCACPTGFRKI-NSHACA 385
Score = 29.7 bits (66), Expect = 5.5
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQE 748
C ++ C CP G+R + ++C +
Sbjct: 361 CLPSGQNYTCACPTGFRKI-NSHACAQ 386
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 55.9 bits (135), Expect = 2e-09
Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 26/148 (17%)
Query: 905 DECARHPNIC-NNGTCVNAI--GSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYG 961
D C +P C N G C+ + GSF C C GF + + + +D E S C
Sbjct: 1 DICDPNP--CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPN 58
Query: 962 NCTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINEC 1021
C N G C +T + C CP + G C +INEC
Sbjct: 59 PCHN--GGTCEISE----------AYRGDTFIGYVCKCPRGFN----GIHC--QHNINEC 100
Query: 1022 EEHDNICENG-HCTNTFGSFMCSCQDGF 1048
E C+NG CT+ ++ C C F
Sbjct: 101 EVEP--CKNGGICTDLVANYSCECPGEF 126
Score = 55.5 bits (134), Expect = 3e-09
Identities = 35/159 (22%), Positives = 49/159 (30%), Gaps = 31/159 (19%)
Query: 811 ECLSIPNICGN-GTCTNL--NGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYE 867
C P C N G C +G F C C +G+ P S + + T C
Sbjct: 2 ICDPNP--CENGGICLPGLADGSFSCECPDGFT-DPNCSSVVEVASDE-EEPTSAGPCTP 57
Query: 868 RPGICANG--------DCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNIC-NNGT 918
P C NG + + C C G+ +I+EC P C N G
Sbjct: 58 NP--CHNGGTCEISEAYRGDTFIGYVCKCPRGFN---GIHCQHNINECEVEP--CKNGGI 110
Query: 919 CVNAIGSFKCHCYAGFKLSHNNDCIGNC-TDINECESPQ 956
C + + ++ C C F NC
Sbjct: 111 CTDLVANYSCECPGEFMGR-------NCQYKGGGHHHHH 142
Score = 49.3 bits (118), Expect = 4e-07
Identities = 42/187 (22%), Positives = 59/187 (31%), Gaps = 67/187 (35%)
Query: 863 DECYERP----GICANGDCANFQGSFQCTCANGYT---------LNTARDSCVDIDECAR 909
D C P GIC G SF C C +G+T + + + C
Sbjct: 1 DICDPNPCENGGICLPGLADG---SFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTP 57
Query: 910 HPNIC-NNGTCV-------NAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYG 961
+P C N GTC + + C C GF
Sbjct: 58 NP--CHNGGTCEISEAYRGDTFIGYVCKCPRGFN-------------------------- 89
Query: 962 NCTNTLGSNC-TDINECESPQACLYG-NCTNTLGSFSCTCPPNYQLTPAGNACVVLEDIN 1019
G +C +INECE + C G CT+ + ++SC CP + G C
Sbjct: 90 ------GIHCQHNINECEV-EPCKNGGICTDLVANYSCECPGEFM----GRNC--QYKGG 136
Query: 1020 ECEEHDN 1026
H +
Sbjct: 137 GHHHHHH 143
Score = 39.3 bits (92), Expect = 0.001
Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 30/102 (29%)
Query: 714 GIC-PSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECAL 772
G C S + ++C CP G+ CQ + +NEC +
Sbjct: 64 GTCEISEAYRGDTFIGYVCKCPRGFN----GIHCQHN-----------------INECEV 102
Query: 773 MPSACQ-GGECINTDGSYRCECPAGYVKDETGKIC-IDDNEC 812
P C+ GG C + +Y CECP + G+ C
Sbjct: 103 EP--CKNGGICTDLVANYSCECPGEF----MGRNCQYKGGGH 138
Score = 37.8 bits (88), Expect = 0.004
Identities = 35/154 (22%), Positives = 50/154 (32%), Gaps = 39/154 (25%)
Query: 150 DECNLMPNMC-NHGTCMN--TPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTY 206
D C+ PN C N G C+ GSF C+C GF +D + + + E T
Sbjct: 1 DICD--PNPCENGGICLPGLADGSFSCECPDGF---TDPNCSSVVEVASDEEE----PTS 51
Query: 207 INECEEMP------EICGSGTCENNIGSFSCR------------YINECEEMPEIC-GSG 247
C P + + C+ INECE P C G
Sbjct: 52 AGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEP--CKNGG 109
Query: 248 TCENNIGSFSCRCEDGYSVKPAEGPAC-TDENEC 280
C + + ++SC C + G C
Sbjct: 110 ICTDLVANYSCECPGEFM-----GRNCQYKGGGH 138
Score = 31.6 bits (72), Expect = 0.55
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 575 IDLDECRMMSYLCRNG-RCRNNIGSFFCECLQGYTLASEGQYC-RDVDEC 622
+++EC C+NG C + + ++ CEC + G+ C
Sbjct: 95 HNINEC--EVEPCKNGGICTDLVANYSCECPGEFM----GRNCQYKGGGH 138
Score = 29.3 bits (66), Expect = 3.0
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 6/50 (12%)
Query: 147 EEIDECNLMPNMC-NHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECE 195
I+EC C N G C + ++ C+C F +
Sbjct: 95 HNINECE--VEPCKNGGICTDLVANYSCECPGEF---MGRNCQYKGGGHH 139
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 56.8 bits (136), Expect = 2e-08
Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 7/126 (5%)
Query: 863 DECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNA 922
+EC + G C++ C + + ++C C +G+ L R C DIDEC P+ C+ CVN
Sbjct: 1 NECLDNNGGCSH-VCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQ-DPDTCS-QLCVNL 56
Query: 923 IGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECESPQA 982
G +KC C GF+L + C + + + +
Sbjct: 57 EGGYKCQCEEGFQLDPHTKA---CKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRN 113
Query: 983 CLYGNC 988
+ +
Sbjct: 114 VVALDT 119
Score = 54.5 bits (130), Expect = 9e-08
Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 16/167 (9%)
Query: 810 NECLSIPNICGNGTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERP 869
NECL C + C +L G+EC C +G+ C DIDEC + P
Sbjct: 1 NECLDNNGGC-SHVCNDLKIGYECLCPDGFQLVAQRRC------------EDIDECQD-P 46
Query: 870 GICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCH 929
C+ C N +G ++C C G+ L+ +C + A + +
Sbjct: 47 DTCS-QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVR-KMTLDRSEY 104
Query: 930 CYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINE 976
L + S + T ++ +
Sbjct: 105 TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 151
Score = 51.0 bits (121), Expect = 1e-06
Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGGE 781
C ++ + C CP G++L + D++EC P C
Sbjct: 14 CNDLKIGYECLCPDGFQLVAQRRCE-------------------DIDECQ-DPDTCSQ-L 52
Query: 782 CINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGGFECTC 835
C+N +G Y+C+C G+ D K C + + E T
Sbjct: 53 CVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTS 106
Score = 47.1 bits (111), Expect = 2e-05
Identities = 31/203 (15%), Positives = 54/203 (26%), Gaps = 51/203 (25%)
Query: 150 DECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINE 209
+EC C+H C + + C C GF + +C DI+EC++
Sbjct: 1 NECLDNNGGCSH-VCNDLKIGYECLCPDGFQLVAQ-RRCEDIDECQD------------- 45
Query: 210 CEEMPEICGSGTCENNIGSFSCRYINECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPA 269
TC S C N G + C+CE+G+ + P
Sbjct: 46 ---------PDTC-----------------------SQLCVNLEGGYKCQCEEGFQLDP- 72
Query: 270 EGPACTDENECTMRTHNCDDNADCINNPVNKTGTRCVDIDECATSIQRCGEG-FCVNDVG 328
AC + ++ + ++ +D+
Sbjct: 73 HTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS 132
Query: 329 TY--HCVCPDGYMLLPSGKECID 349
D + S I
Sbjct: 133 QRMICSTQLDRAHGVSSYDTVIS 155
Score = 46.0 bits (108), Expect = 4e-05
Identities = 30/159 (18%), Positives = 42/159 (26%), Gaps = 36/159 (22%)
Query: 235 NECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADCI 294
NEC + C S C + + C C DG+ +
Sbjct: 1 NECLDNNGGC-SHVCNDLKIGYECLCPDGFQLVA-------------------------- 33
Query: 295 NNPVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRREL 354
RC DIDEC C CVN G Y C C +G+ L P K C +
Sbjct: 34 -------QRRCEDIDECQDP-DTC-SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIA 84
Query: 355 CYLNYTDGLCSLPMSNEQTRMVCCCSMGQSWGKPCQPCP 393
+ ++ +
Sbjct: 85 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVAS 123
Score = 44.4 bits (104), Expect = 1e-04
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 975 NECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCT 1034
NEC C + + C CP +QL DI+EC++ D + C
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE----DIDECQDPDTC--SQLCV 54
Query: 1035 NTFGSFMCSCQDGFKL 1050
N G + C C++GF+L
Sbjct: 55 NLEGGYKCQCEEGFQL 70
Score = 44.4 bits (104), Expect = 2e-04
Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 8/120 (6%)
Query: 116 DECTDNTNYCDYILLCGSK------PGEFMNPMTNKTEEIDECNLMPNMCNHGTCMNTPG 169
+EC DN C ++ P F + E+IDEC P+ C+ C+N G
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQ-LCVNLEG 58
Query: 170 SFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINECEEMPEICGSGTCENNIGSF 229
+ CQC GF D T C + + + N +
Sbjct: 59 GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 118
Score = 36.0 bits (82), Expect = 0.060
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 578 DECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVNKRESRCY 633
+EC + C + C + + C C G+ L ++ + C D+DEC++ + C
Sbjct: 1 NECLDNNGGC-SHVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCV 54
Score = 32.1 bits (72), Expect = 1.1
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 688 PAVGSDEHKTLCPGGSGYRPNSATREGIC-----PSPGKCQNVMGSFICTCPPGYRLSPD 742
P H P G + + G C P+P + F C CP G L+ D
Sbjct: 334 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHS-PKFTCACPDGMLLARD 392
Query: 743 KNSCQED 749
SC +
Sbjct: 393 MRSCLTE 399
Score = 32.1 bits (72), Expect = 1.1
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 574 CIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVNKRESRCY 633
C D+DEC + C N G + C+C +G+ L + C+ V +
Sbjct: 37 CEDIDEC--QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEV 94
Query: 634 LDT 636
Sbjct: 95 RKM 97
Score = 30.6 bits (68), Expect = 3.2
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 328 GTYHCVCPDGYMLLPSGKECI 348
+ C CPDG +L + C+
Sbjct: 377 PKFTCACPDGMLLARDMRSCL 397
Score = 29.0 bits (64), Expect = 9.8
Identities = 13/89 (14%), Positives = 27/89 (30%)
Query: 719 PGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQ 778
C N+ G + C C G++L P +C+ + R + + + + S
Sbjct: 50 SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIP 109
Query: 779 GGECINTDGSYRCECPAGYVKDETGKICI 807
+ + + IC
Sbjct: 110 NLRNVVALDTEVASNRIYWSDLSQRMICS 138
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF, DSL,
notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 49.7 bits (119), Expect = 5e-07
Identities = 44/228 (19%), Positives = 67/228 (29%), Gaps = 74/228 (32%)
Query: 777 CQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGGFECTCS 836
G +G C Y G C + C + G+ C + TC
Sbjct: 8 HHHGSI---EGRSAVTCDDYY----YGFGC--NKFCRPRDDFFGHYAC---DQNGNKTCM 55
Query: 837 EGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCANGYTLNT 896
EG+ + P + C + +G C C C G+
Sbjct: 56 EGW----------------MGPECNRAICRQGCSPK-HGSCKL---PGDCRCQYGWQ--- 92
Query: 897 ARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQ 956
+ D+C HP C +G C ++C C + + D+N C + Q
Sbjct: 93 ----GLYCDKCIPHPG-CVHGICNE---PWQCLCETNWGGQLCD------KDLNYCGTHQ 138
Query: 957 ACLYGNCTNTLGSNCTDINECESPQACLYGNCTNT-LGSFSCTCPPNY 1003
CL G G C+NT + C+CP Y
Sbjct: 139 PCLNG------------------------GTCSNTGPDKYQCSCPEGY 162
Score = 48.1 bits (115), Expect = 2e-06
Identities = 35/169 (20%), Positives = 51/169 (30%), Gaps = 40/169 (23%)
Query: 768 NECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNL 827
C C D + C G+ G C + C + G+C
Sbjct: 32 KFCRPRDDFFGHYAC---DQNGNKTCMEGW----MGPEC-NRAICRQGCSPKH-GSCKL- 81
Query: 828 NGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCT 887
+C C G+ D+C PG C +G C +QC
Sbjct: 82 --PGDCRCQYGWQ------------------GLYCDKCIPHPG-CVHGIC---NEPWQCL 117
Query: 888 CANGYTLNTARDSC-VDIDECARHPNICNNGTCVN-AIGSFKCHCYAGF 934
C + C D++ C H N GTC N ++C C G+
Sbjct: 118 CETNWG----GQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGY 162
Score = 46.6 bits (111), Expect = 6e-06
Identities = 38/191 (19%), Positives = 62/191 (32%), Gaps = 42/191 (21%)
Query: 871 ICANGDCAN---FQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFK 927
+ + + +G TC + Y C C + + C +
Sbjct: 1 MRGSHHHHHHGSIEGRSAVTCDDYYY----GFGCNK--FCRPRDDFFGHYACD---QNGN 51
Query: 928 CHCYAGFK---------LSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECE 978
C G+ + G+C +C C YG G C ++C
Sbjct: 52 KTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCR----CQYG----WQGLYC---DKCI 100
Query: 979 SPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNT-F 1037
C++G C + C C N+ G C +D+N C H G C+NT
Sbjct: 101 PHPGCVHGICNE---PWQCLCETNWG----GQLC--DKDLNYCGTHQPCLNGGTCSNTGP 151
Query: 1038 GSFMCSCQDGF 1048
+ CSC +G+
Sbjct: 152 DKYQCSCPEGY 162
Score = 42.4 bits (100), Expect = 2e-04
Identities = 38/194 (19%), Positives = 62/194 (31%), Gaps = 46/194 (23%)
Query: 715 ICPSPGKCQN--VMGSFICTCPPGY---------RLSPDKN---SCQEDFAKLCPEGVGR 760
+ S + + G TC Y R D +C ++ K C EG
Sbjct: 1 MRGSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMG 60
Query: 761 GDKGEDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICG 820
+ + + + G C C C G+ G C ++C+ P C
Sbjct: 61 PECNRAICRQG---CSPKHGSCKL---PGDCRCQYGW----QGLYC---DKCIPHPG-CV 106
Query: 821 NGTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCAN- 879
+G C ++C C + G L D++ C G C+N
Sbjct: 107 HGICNE---PWQCLCETNWG-GQLCD-------------KDLNYCGTHQPCLNGGTCSNT 149
Query: 880 FQGSFQCTCANGYT 893
+QC+C GY+
Sbjct: 150 GPDKYQCSCPEGYS 163
Score = 32.3 bits (74), Expect = 0.44
Identities = 27/108 (25%), Positives = 37/108 (34%), Gaps = 20/108 (18%)
Query: 242 EICGSGTCENN---IGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADCINN-- 296
IC G + CRC+ G+ +G C ++C H + C
Sbjct: 66 AICRQGCSPKHGSCKLPGDCRCQYGW-----QGLYC---DKCI--PHPGCVHGICNEPWQ 115
Query: 297 ---PVNKTGTRC-VDIDECATSIQRCGEGFCVN-DVGTYHCVCPDGYM 339
N G C D++ C T G C N Y C CP+GY
Sbjct: 116 CLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYS 163
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex,
blood coagulation, CL PAIR of basic residues, disulfide
bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Length = 317
Score = 49.3 bits (118), Expect = 3e-06
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 972 TDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENG 1031
+ C S G+C +++ ++CTC P Y+ G+ C + NEC
Sbjct: 3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYE----GSNCEL--AKNECHPERTDGCQH 56
Query: 1032 HCTNTFGSFMCSCQDGFKL 1050
C S+ CSC G++L
Sbjct: 57 FCLPGQESYTCSCAQGYRL 75
Score = 46.2 bits (110), Expect = 3e-05
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 15/114 (13%)
Query: 807 IDDNECLSIPNICGNGTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECY 866
+ C+S P NG+C + G+ CTCS GY +C +EC+
Sbjct: 3 KGGSPCISQP-CLHNGSCQDSIWGYTCTCSPGYE---GSNC-----------ELAKNECH 47
Query: 867 ERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCV 920
C Q S+ C+CA GY L CV D+CA
Sbjct: 48 PERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPD 101
Score = 45.9 bits (109), Expect = 4e-05
Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 21/109 (19%)
Query: 716 CPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPS 775
C G CQ+ + + CTC PGY + ++C+ + PE
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGY----EGSNCELAKNECHPERTDGCQHF----------- 57
Query: 776 ACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTC 824
C+ SY C C GY E K C+ ++C
Sbjct: 58 ------CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAP 100
Score = 42.0 bits (99), Expect = 6e-04
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 35/112 (31%)
Query: 244 CGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADCINNPVNKTGT 303
+G+C+++I ++C C GY + + C + + C
Sbjct: 14 LHNGSCQDSIWGYTCTCSPGY-----------EGSNCELAKNECHPERTD---------- 52
Query: 304 RCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELC 355
+ FC+ +Y C C GY L K+C+ + C
Sbjct: 53 --------------GCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 41.2 bits (97), Expect = 0.001
Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 33/112 (29%)
Query: 902 VDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNC-TDINECESPQACLY 960
C P +NG+C ++I + C C G++ S NC NEC
Sbjct: 3 KGGSPCISQP-CLHNGSCQDSIWGYTCTCSPGYEGS-------NCELAKNECHP---ERT 51
Query: 961 GNCTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNAC 1012
C + C S++C+C Y+L C
Sbjct: 52 DGCQH---------------------FCLPGQESYTCSCAQGYRLGEDHKQC 82
Score = 33.5 bits (77), Expect = 0.29
Identities = 25/138 (18%), Positives = 36/138 (26%), Gaps = 39/138 (28%)
Query: 575 IDLDECRMMSYLCRN-GRCRNNIGSFFCECLQGYTLASEGQYC-RDVDEC-KEVNKRESR 631
C +S C + G C+++I + C C GY EG C +EC E
Sbjct: 3 KGGSPC--ISQPCLHNGSCQDSIWGYTCTCSPGY----EGSNCELAKNECHPERTDGCQH 56
Query: 632 CYLDTEEEEEEEEEEEGGYGGGSRRVTCTKEIAGSTTRSTCCCSIGKAWGPQCEECPAVG 691
L +E TC C+ G G ++C
Sbjct: 57 FCLPGQES------------------------------YTCSCAQGYRLGEDHKQCVPHD 86
Query: 692 SDEHKTLCPGGSGYRPNS 709
L
Sbjct: 87 QCACGVLTSEKRAPDLQD 104
Score = 32.4 bits (74), Expect = 0.76
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 13/86 (15%)
Query: 217 CGSGTCENNIGSFSC------------RYINECEEMPEICGSGTCENNIGSFSCRCEDGY 264
+G+C+++I ++C NEC C S++C C GY
Sbjct: 14 LHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGY 73
Query: 265 SVKPAEG-PACTDENECTMRTHNCDD 289
+ D+ C + T
Sbjct: 74 RLGEDHKQCVPHDQCACGVLTSEKRA 99
Score = 31.2 bits (71), Expect = 1.7
Identities = 11/55 (20%), Positives = 20/55 (36%)
Query: 148 EIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICG 202
+EC+ C+ S+ C C +G+ D QC+ ++C
Sbjct: 42 AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSE 96
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 45.9 bits (108), Expect = 4e-05
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 6/94 (6%)
Query: 768 NECALMPSAC-QGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICG---NGT 823
CA C EC + + C C A Y + G+ C+ + +
Sbjct: 6 QTCANNRHQCSVHAECRDYATGFCCRCVANYTGN--GRQCVAEGSPQRVNGKVKGRIFVG 63
Query: 824 CTNLNGGFECTCSEGYAPGPLGSCAILLTLPPIS 857
+ + FE T Y G ++ P +
Sbjct: 64 SSQVPVVFENTDLHSYVVMNHGRSYTAISTIPET 97
Score = 43.2 bits (101), Expect = 3e-04
Identities = 15/120 (12%), Positives = 30/120 (25%), Gaps = 18/120 (15%)
Query: 902 VDIDECARHPNICN-NGTCVNAIGSFKCHCYAGFK------------LSHNNDCIGNCTD 948
+ CA + + C+ + C + F C C A + N G
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFV 62
Query: 949 INEC---ESPQACLYGNCTNTLGSNCTDINECESP--QACLYGNCTNTLGSFSCTCPPNY 1003
+ L+ G + T I+ + L + + +
Sbjct: 63 GSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLLPLAPIGGIIGWMFAVEQDG 122
Score = 37.4 bits (86), Expect = 0.019
Identities = 14/99 (14%), Positives = 20/99 (20%), Gaps = 18/99 (18%)
Query: 235 NECEEMPEIC-GSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADC 293
C C C + F CRC Y+ G C E
Sbjct: 6 QTCANNRHQCSVHAECRDYATGFCCRCVANYT---GNGRQCVAEGSPQRVNGKVKGRIFV 62
Query: 294 INNPVN--------------KTGTRCVDIDECATSIQRC 318
++ V G I ++
Sbjct: 63 GSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYS 101
Score = 36.3 bits (83), Expect = 0.041
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 1016 EDINECEEHDNIC-ENGHCTNTFGSFMCSCQDGF 1048
C + + C + C + F C C +
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANY 36
Score = 35.1 bits (80), Expect = 0.088
Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 8/124 (6%)
Query: 147 EEIDECNLMPNMCN-HGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGT 205
C + C+ H C + F C+C Y + QC+ + + G
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVAN--YTGNGRQCVAEGSPQRVNGKV-KGR 59
Query: 206 YINECEEMPEICGSGTCENNIGSFSCRYINECEEMPEICGSG----TCENNIGSFSCRCE 261
++P + + + + R +PE G I + E
Sbjct: 60 IFVGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLLPLAPIGGIIGWMFAVE 119
Query: 262 DGYS 265
Sbjct: 120 QDGF 123
Score = 33.2 bits (75), Expect = 0.39
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 578 DECRMMSYLCR-NGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVN 626
C + C + CR+ F C C+ YT G+ C + VN
Sbjct: 6 QTCANNRHQCSVHAECRDYATGFCCRCVANYT--GNGRQCVAEGSPQRVN 53
Score = 33.2 bits (75), Expect = 0.41
Identities = 16/99 (16%), Positives = 25/99 (25%), Gaps = 13/99 (13%)
Query: 276 DENECTMRTHNCDDNADCINNPVNKTGTRCV----DIDECATSIQRCGEGFCVNDVGTYH 331
+ C H C +A+C + TG C + G
Sbjct: 4 AQQTCANNRHQCSVHAECRDYA---TGFCCRCVANYTGNGRQCVAEG---SPQRVNGKVK 57
Query: 332 CVCPDGYMLLPSGKECIDMRRELCYLNYTDGLCSLPMSN 370
G +P E D+ Y+ G +S
Sbjct: 58 GRIFVGSSQVPVVFENTDLH---SYVVMNHGRSYTAIST 93
Score = 30.1 bits (67), Expect = 3.7
Identities = 6/36 (16%), Positives = 9/36 (25%)
Query: 97 RWCVCDEGFRGDGYSCEDIDECTDNTNYCDYILLCG 132
C C + G+G C + G
Sbjct: 28 FCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVG 63
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 46.4 bits (109), Expect = 5e-05
Identities = 54/271 (19%), Positives = 78/271 (28%), Gaps = 19/271 (7%)
Query: 99 CVCDEGFRGDGYSCEDIDECTDNTNYCDYILLCGSKPGEFMNPMTNKTE---EIDECNLM 155
C G + C CD C E+ + C+
Sbjct: 138 ASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAF 197
Query: 156 PNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINECEEMPE 215
C G C+ S+ C SD C + C C G I+ +
Sbjct: 198 EFHCLSGECI--HSSWRCDGGPDCKDKSDEENC-AVATCRPDEFQCSDGNCIHGSRQ--- 251
Query: 216 ICGSGTCENNIGSFSCRYINECEEMPEI-CGSGTC--ENNIGSFSCRCEDGYSVKPAEGP 272
C++ C + CE + C SG C + + + + C D E
Sbjct: 252 CDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECG 311
Query: 273 ACTDENECTMRTHNCDDNA-----DCINNPVNKTGTRCVDIDECATSIQRCGEGFCVNDV 327
+ +H C+D C + RC DIDEC CVN
Sbjct: 312 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD--PDTCSQLCVNLE 369
Query: 328 GTYHCVCPDGYMLLPSGKECIDMRRELCYLN 358
G Y C C +G+ L P K C +
Sbjct: 370 GGYKCQCEEGFQLDPHTKACKAVGSIAYLFF 400
Score = 41.4 bits (96), Expect = 0.002
Identities = 49/285 (17%), Positives = 87/285 (30%), Gaps = 39/285 (13%)
Query: 778 QGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNIC-GNGTCTNLNGGFECTCS 836
+ DGS CP + + C+ C + C + + + C
Sbjct: 125 CDSDRDCLDGSDEASCPVLTCGP--ASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCR 182
Query: 837 EGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCANGYTLNT 896
Y D C C +G+C + S++C +
Sbjct: 183 GLYVFQG-----------------DSSPCSAFEFHCLSGECIH--SSWRCDGGPDCKDKS 223
Query: 897 ARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQ 956
++C + C C++G C++ GS +C + C ++ CE P
Sbjct: 224 DEENC-AVATCRPDEFQCSDGNCIH--GSRQCDREYD---CKDMSDEVGCVNVTLCEGPN 277
Query: 957 ACLYGNCTNTLGSN-CTDINEC-----ESPQACLYGNCTNTLGSFSCTC---PPNYQLTP 1007
+ C +C E + C C + G S C Y+
Sbjct: 278 KFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLC 337
Query: 1008 AGNACVVLED--INECEEHDNICENGHCTNTFGSFMCSCQDGFKL 1050
+V + + E D + C N G + C C++GF+L
Sbjct: 338 PDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQL 382
Score = 39.8 bits (92), Expect = 0.005
Identities = 45/273 (16%), Positives = 77/273 (28%), Gaps = 35/273 (12%)
Query: 782 CINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGGFECTCSEGYAP 841
C + + C YV D + C + C +G C ++ + C
Sbjct: 170 CEDGSDEWPQRCRGLYV------FQGDSSPCSAFEFHCLSGEC--IHSSWRCDGGPDCKD 221
Query: 842 GPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSC 901
+ C C++G+C GS QC + C
Sbjct: 222 KSDEEN------------CAVATCRPDEFQCSDGNC--IHGSRQCDREYDCKDMSDEVGC 267
Query: 902 VDIDECA-RHPNICNNGTCVNA-----------IGSFKCHCYAGFKLSHNNDCIGNCTDI 949
V++ C + C++G C+ S + G +N+ +
Sbjct: 268 VNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCN 327
Query: 950 NECESPQACLYGNCTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAG 1009
+ + C DI+EC+ P C C N G + C C +QL P
Sbjct: 328 DLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC-SQLCVNLEGGYKCQCEEGFQLDPHT 386
Query: 1010 NACVVLEDINECEEHDNICENGHCTNTFGSFMC 1042
AC + I + +
Sbjct: 387 KACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSL 419
Score = 33.3 bits (75), Expect = 0.49
Identities = 33/194 (17%), Positives = 55/194 (28%), Gaps = 12/194 (6%)
Query: 106 RGDGYSCEDIDECTDNTNYCDYILLCGSKPGEFMNPMTNKTEEIDECNLMPNMCNHGTCM 165
R D + C D C + CD C E E ++ C+ G C+
Sbjct: 234 RPDEFQCSDG-NCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKF-----KCHSGECI 287
Query: 166 NTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINECEEMPEICGSGTCENN 225
C R SD EC + +G + C ++ +
Sbjct: 288 --TLDKVCNMARDCRDWSDEPIK----ECGTNECLDNNGGCSHVCNDLKIGYECLCPDGF 341
Query: 226 IGSFSCRYINECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTH 285
R + E S C N G + C+CE+G+ + P + +
Sbjct: 342 QLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFT 401
Query: 286 NCDDNADCINNPVN 299
N + +
Sbjct: 402 NRHEVRKMTLDRSE 415
Score = 30.2 bits (67), Expect = 4.9
Identities = 41/288 (14%), Positives = 74/288 (25%), Gaps = 22/288 (7%)
Query: 691 GSDEHKTLCPGGSGYRPNSATREGICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDF 750
GSDE C G ++ +S+ + + S+ C P + D+ +C
Sbjct: 173 GSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA--- 229
Query: 751 AKLCPEGVGRGDKGEDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDN 810
C + G C C E D S C + + K
Sbjct: 230 VATCRPDEFQCSDGN----CIHGSRQCDR-EYDCKDMSDEVGCVNVTLCEGPNKFKCHSG 284
Query: 811 ECLSIPNIC-GNGTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERP 869
EC+++ +C C + + C G C+ + I EC
Sbjct: 285 ECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGY-----ECLCPD 339
Query: 870 GICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCH 929
G + C + T S + ++ + C G ++
Sbjct: 340 GFQLVAQ---RRCEDIDECQDPDT-----CSQLCVNLEGGYKCQCEEGFQLDPHTKACKA 391
Query: 930 CYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINEC 977
+ L N ++ E L +
Sbjct: 392 VGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIY 439
Score = 29.8 bits (66), Expect = 6.0
Identities = 49/276 (17%), Positives = 80/276 (28%), Gaps = 40/276 (14%)
Query: 789 YRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGGFECTCSEGYAPGPLGSCA 848
++ + G + C C +G C + + C G A GS
Sbjct: 3 WKLRWTVALLLAAAG--TAVGDRCERNEFQCQDGKCISY----KWVCD-GSAECQDGSDE 55
Query: 849 ILLTLPPISPSTDIDECYERPGICANG--------DCANFQ----------GSFQCTCAN 890
T ++ + C R C DC N + C +
Sbjct: 56 SQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHD 115
Query: 891 GYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDIN 950
G + + + C +C + + SF+C+ D +C D
Sbjct: 116 GKCI-SRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCED-G 173
Query: 951 ECESPQACLYGNCTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGN 1010
E PQ C S C+ CL G C + S+ C P+ +
Sbjct: 174 SDEWPQRCRGLYVFQGDSSPCS-----AFEFHCLSGECIH--SSWRCDGGPDCKDKSDEE 226
Query: 1011 ACVVLEDINECEEHDNICENGHCTNTFGSFMCSCQD 1046
C V C + C +G+C + GS C +
Sbjct: 227 NCAV----ATCRPDEFQCSDGNCIH--GSRQCDREY 256
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 40.5 bits (95), Expect = 8e-05
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQED 749
C N +G + C+C PGY L D++SCQ +
Sbjct: 26 CHNYVGGYFCSCRPGYELQEDRHSCQAE 53
Score = 40.1 bits (94), Expect = 9e-05
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 306 VDIDECATSIQRCGEG-------FCVNDVGTYHCVCPDGYMLLPSGKEC 347
VD+DECA+ + E C N VG Y C C GY L C
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
Score = 39.7 bits (93), Expect = 1e-04
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 1016 EDINECEEHDNICENG-------HCTNTFGSFMCSCQDGFKL 1050
D++EC E C N G + CSC+ G++L
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYEL 43
Score = 39.0 bits (91), Expect = 2e-04
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 147 EEIDECNLMPN--------MCNHGTCMNTPGSFHCQCNRGFLYDSDTHQC 188
++DEC C H C N G + C C G+ D H C
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQH-LCHNYVGGYFCSCRPGYELQEDRHSC 50
Score = 38.6 bits (90), Expect = 4e-04
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 973 DINECESPQACLYGN--------CTNTLGSFSCTCPPNYQLTPAGNACVV 1014
D++EC S + C N +G + C+C P Y+L ++C
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52
Score = 37.8 bits (88), Expect = 6e-04
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 902 VDIDECARHPNICNNG-------TCVNAIGSFKCHCYAGFKLSHNN 940
VD+DECA C N +G + C C G++L +
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDR 47
Score = 37.8 bits (88), Expect = 7e-04
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 765 EDLNECALMPSACQGGE-------CINTDGSYRCECPAGYVKDETGKIC 806
DL+ECA + + C N G Y C C GY E C
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
Score = 36.7 bits (85), Expect = 0.002
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 861 DIDECYERPGICANGD-------CANFQGSFQCTCANGYTLNTARDSC 901
D+DEC R C N+ G + C+C GY L R SC
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
Score = 36.3 bits (84), Expect = 0.002
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 575 IDLDECRMMSYLCRNG-------RCRNNIGSFFCECLQGYTLASEGQYCR 617
+DLDEC S C N +G +FC C GY L + C+
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
Score = 28.6 bits (64), Expect = 1.3
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 7/38 (18%)
Query: 234 INECEEMPEICGSG-------TCENNIGSFSCRCEDGY 264
++EC + C N +G + C C GY
Sbjct: 4 LDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGY 41
Score = 27.8 bits (62), Expect = 2.5
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 807 IDDNECLSIPNICGNG-------TCTNLNGGFECTCSEGY 839
+D +EC S C N GG+ C+C GY
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGY 41
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 41.3 bits (97), Expect = 3e-04
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 703 SGYRPNSATREGICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQ 747
N T P C N +G + C+CPP Y L D +C
Sbjct: 113 VATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCG 157
Score = 39.0 bits (91), Expect = 0.002
Identities = 16/47 (34%), Positives = 19/47 (40%)
Query: 303 TRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECID 349
DI+EC + FC N +G Y C CP Y L K C
Sbjct: 112 YVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158
Score = 37.1 bits (86), Expect = 0.010
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 228 SFSCRYINECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECT 281
+ INEC + ++ S C N IG + C C Y + D C
Sbjct: 111 YYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFL-------HDDMKNCG 157
Score = 36.7 bits (85), Expect = 0.011
Identities = 14/46 (30%), Positives = 17/46 (36%)
Query: 764 GEDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDD 809
D+NEC C N G Y C CP Y + K C +
Sbjct: 114 ATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGVN 159
Score = 36.3 bits (84), Expect = 0.017
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 896 TARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTD 948
A DI+EC ++ + C N IG + C C + L + NC
Sbjct: 109 AAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMK---NCGV 158
Score = 35.9 bits (83), Expect = 0.026
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 969 SNCTDINECESPQACLYGN-CTNTLGSFSCTCPPNYQLTPAGNAC 1012
TDINEC + C N +G + C+CPP Y L C
Sbjct: 112 YVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 156
Score = 35.6 bits (82), Expect = 0.030
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 859 STDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVD 903
+TDI+EC + + + C NF G + C+C Y L+ +C
Sbjct: 114 ATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158
Score = 34.8 bits (80), Expect = 0.061
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 148 EIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCID 190
+I+EC ++ C N G + C C + D C
Sbjct: 116 DINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158
Score = 34.0 bits (78), Expect = 0.11
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 1017 DINECEEHDNICENGHCTNTFGSFMCSCQDGFKL 1050
DINEC + ++ + C N G + CSC + L
Sbjct: 116 DINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFL 149
Score = 33.6 bits (77), Expect = 0.13
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 574 CIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRD 618
D++EC + + C N IG +FC C Y L + + C
Sbjct: 114 ATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158
Score = 31.3 bits (71), Expect = 0.92
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 806 CIDDNECLSIPNICGNGTCTNLNGGFECTCSEGY 839
D NEC ++ + C N GG+ C+C Y
Sbjct: 114 ATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEY 147
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 37.5 bits (88), Expect = 6e-04
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 902 VDIDECARHPNIC-NNGTCVNAIGSFKCHCYAGF 934
VD D+C +P C N G+C + I S++C C GF
Sbjct: 1 VDGDQCESNP--CLNGGSCKDDINSYECWCPFGF 32
Score = 32.8 bits (76), Expect = 0.027
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 766 DLNECALMPSACQ-GGECINTDGSYRCECPAGYVKDETGKIC 806
D ++C P C GG C + SY C CP G+ GK C
Sbjct: 2 DGDQCESNP--CLNGGSCKDDINSYECWCPFGF----EGKNC 37
Score = 32.5 bits (75), Expect = 0.036
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 807 IDDNECLSIPNICGN-GTCTNLNGGFECTCSEGY 839
+D ++C S P C N G+C + +EC C G+
Sbjct: 1 VDGDQCESNP--CLNGGSCKDDINSYECWCPFGF 32
Score = 31.7 bits (73), Expect = 0.057
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 306 VDIDECATSIQRCGEGFCVNDVGTYHCVCPDGY 338
VD D+C ++ G G C +D+ +Y C CP G+
Sbjct: 1 VDGDQCESNPCLNG-GSCKDDINSYECWCPFGF 32
Score = 31.7 bits (73), Expect = 0.066
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 973 DINECESPQACLY-GNCTNTLGSFSCTCPPNYQ 1004
D ++CES CL G+C + + S+ C CP ++
Sbjct: 2 DGDQCES-NPCLNGGSCKDDINSYECWCPFGFE 33
Score = 30.5 bits (70), Expect = 0.18
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 575 IDLDECRMMSYLCRN-GRCRNNIGSFFCECLQGYT 608
+D D+C S C N G C+++I S+ C C G+
Sbjct: 1 VDGDQC--ESNPCLNGGSCKDDINSYECWCPFGFE 33
Score = 29.8 bits (68), Expect = 0.34
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 861 DIDECYERPGICAN-GDCANFQGSFQCTCANGYT 893
D D+C P C N G C + S++C C G+
Sbjct: 2 DGDQCESNP--CLNGGSCKDDINSYECWCPFGFE 33
Score = 29.4 bits (67), Expect = 0.49
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 1017 DINECEEHDNICEN-GHCTNTFGSFMCSCQDGF 1048
D ++CE N C N G C + S+ C C GF
Sbjct: 2 DGDQCE--SNPCLNGGSCKDDINSYECWCPFGF 32
Score = 29.0 bits (66), Expect = 0.55
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 148 EIDECNLMPNMC-NHGTCMNTPGSFHCQCNRGF 179
+ D+C P C N G+C + S+ C C GF
Sbjct: 2 DGDQCESNP--CLNGGSCKDDINSYECWCPFGF 32
Score = 28.6 bits (65), Expect = 0.75
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 234 INECEEMPEICGSGTCENNIGSFSCRCEDGYS 265
++CE P + G G+C+++I S+ C C G+
Sbjct: 3 GDQCESNPCLNG-GSCKDDINSYECWCPFGFE 33
Score = 25.9 bits (58), Expect = 7.9
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 720 GKCQNVMGSFICTCPPGY 737
G C++ + S+ C CP G+
Sbjct: 15 GSCKDDINSYECWCPFGF 32
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 38.6 bits (90), Expect = 8e-04
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 782 CINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGN-GTCTNL--NGGFECTCSEG 838
+ ++ C C +G + C C N GTC F C C EG
Sbjct: 25 VLRSNRVEYCWCNSGR----AQCHSVPVKSCSEPR--CFNGGTCQQALYFSDFVCQCPEG 78
Query: 839 YA 840
+A
Sbjct: 79 FA 80
Score = 28.2 bits (63), Expect = 3.8
Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 32/109 (29%)
Query: 788 SYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGGFECTCSEGYAPGPLGSC 847
SY+ C +DE ++ ++ P + N C C+ G A
Sbjct: 1 SYQVIC-----RDEKTQMIYQQHQSWLRPVLRSNRV-------EYCWCNSGRA----QCH 44
Query: 848 AILLTLPPISPSTDIDECYERPGICAN-GDC--ANFQGSFQCTCANGYT 893
S + C E C N G C A + F C C G+
Sbjct: 45 -----------SVPVKSCSEPR--CFNGGTCQQALYFSDFVCQCPEGFA 80
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 41.8 bits (97), Expect = 0.001
Identities = 24/173 (13%), Positives = 38/173 (21%), Gaps = 36/173 (20%)
Query: 766 DLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCT 825
D+ C+ + CEC TG C + G+
Sbjct: 290 DIKVRGRCKCNLHATVCVYDNSKLTCECEHNT----TGPDC-GKCKKNYQGRPWSPGSYL 344
Query: 826 NLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQ 885
+ G C + + C C NG + +
Sbjct: 345 PIPKGAANACIPSISSI------------------GTNVCDNELLHCQNG--GTCHNNVR 384
Query: 886 CTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSH 938
C C YT C ++ G+C + G H
Sbjct: 385 CLCPAAYT----GILC---EKLRCEE----AGSCGSDSGQGAPPHGTHHHHHH 426
Score = 37.5 bits (86), Expect = 0.020
Identities = 22/148 (14%), Positives = 35/148 (23%), Gaps = 16/148 (10%)
Query: 860 TDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTC 919
+DI C C C + T D P + G+
Sbjct: 289 SDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTT---GPDCGKCKKNYQGRP--WSPGSY 343
Query: 920 VNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDI---NE 976
+ C N C + E G C N + C
Sbjct: 344 LPIPKGAANACIPSISSIGTNVC--------DNELLHCQNGGTCHNNVRCLCPAAYTGIL 395
Query: 977 CESPQACLYGNCTNTLGSFSCTCPPNYQ 1004
CE + G+C + G + ++
Sbjct: 396 CEKLRCEEAGSCGSDSGQGAPPHGTHHH 423
Score = 29.4 bits (65), Expect = 6.0
Identities = 18/117 (15%), Positives = 28/117 (23%), Gaps = 15/117 (12%)
Query: 148 EIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYI 207
+I + C+ C+C + + P G+Y+
Sbjct: 290 DIKVRGRCKCNLHATVCVYDNSKLTCECEHNT---TGPDCGKCKKNYQGRP--WSPGSYL 344
Query: 208 NECEEMPEICGSGTCENNIGSFSCRYINECEEMPEICGSGTCENNIGSFSCRCEDGY 264
+ C S E+ GTC NN C C Y
Sbjct: 345 PIPKGAANACIPSIS-------SIGTNVCDNELLHCQNGGTCHNN---VRCLCPAAY 391
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 41.2 bits (96), Expect = 0.001
Identities = 44/304 (14%), Positives = 73/304 (24%), Gaps = 45/304 (14%)
Query: 649 GYGGGSRRVTCTKEIAGSTTRSTCCCSIGKAWGPQCEECPAVGSDEHKTLCPGGSGYRPN 708
+ V E+ + + A + G P
Sbjct: 140 IHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWG--PE 197
Query: 709 SATREGICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLN 768
C + G C G C CPPG+ + C + G
Sbjct: 198 CNHLCTACMNNGVCHEDTGE--CICPPGFM------------GRTCEKACELHTFGRTCK 243
Query: 769 ECALMPSACQGGECINTDGSYRCECPAGYVKDETGKIC-IDDNECLSIPNICGNGTCTN- 826
E C+ D Y C C G+ G C + P+ +C N
Sbjct: 244 ERCSGQEGCKSYVFCLPD-PYGCSCATGW----KGLQCNEACHPGFYGPDCKLRCSCNNG 298
Query: 827 --LNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSF 884
+ C CS G+ G C + + G F
Sbjct: 299 EMCDRFQGCLCSPGWQ-GL--QC-----------EREGIPRMTPKIVDLPDHIEVNSGKF 344
Query: 885 QCTC-ANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCI 943
C A+G+ L T + + + N F + ++ + +
Sbjct: 345 NPICKASGWPLPTNEEMT-----LVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGV 399
Query: 944 GNCT 947
C+
Sbjct: 400 WVCS 403
Score = 33.9 bits (77), Expect = 0.28
Identities = 46/306 (15%), Positives = 74/306 (24%), Gaps = 44/306 (14%)
Query: 760 RGDKGEDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNIC 819
DKG+++N + I +GS+ P V D +
Sbjct: 110 TVDKGDNVNISFKKVLIKEEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSA 169
Query: 820 GNGTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICAN-GDCA 878
F G EC C N G C
Sbjct: 170 RYIGGNLFTSAFTRLIVRRCEAQKWG-----------------PECNHLCTACMNNGVCH 212
Query: 879 NFQGSFQCTCANGYTLNTARDSCVDIDECARHPNIC-NNGTCVNAI----GSFKCHCYAG 933
+ +C C G+ T +C C C + + + C C G
Sbjct: 213 E--DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATG 270
Query: 934 FKLSHNNDCIGNCTDINECESPQACLYG-NCTNTLGSNCTD-----------INECESPQ 981
+K N+ +C+ +C G C G C+ I
Sbjct: 271 WKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQGLQCEREGIPRMTPKI 330
Query: 982 ACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFM 1041
L + G F+ C + G E++ + D + N F
Sbjct: 331 VDLPDHIEVNSGKFNPICKAS------GWPLPTNEEMTLVKP-DGTVLHPKDFNHTDHFS 383
Query: 1042 CSCQDG 1047
+
Sbjct: 384 VAIFTI 389
Score = 33.5 bits (76), Expect = 0.38
Identities = 33/230 (14%), Positives = 57/230 (24%), Gaps = 34/230 (14%)
Query: 769 ECALMPSACQ-GGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGN-GTCTN 826
EC + +AC G C + + C CP G++ K C + C C +
Sbjct: 197 ECNHLCTACMNNGVCH--EDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKS 254
Query: 827 ----LNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANF-- 880
L + C+C+ G+ G + + P C N
Sbjct: 255 YVFCLPDPYGCSCATGWK-GLQCNE-------------ACHPGFYGPDCKLRCSCNNGEM 300
Query: 881 -QGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHN 939
C C+ G+ + + G F C A +
Sbjct: 301 CDRFQGCLCSPGWQGLQCEREGIP---RMTPKIVDLPDHIEVNSGKFNPICKA------S 351
Query: 940 NDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECESPQACLYGNCT 989
+ ++ + L+ N I G
Sbjct: 352 GWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWV 401
Score = 29.7 bits (66), Expect = 6.2
Identities = 33/207 (15%), Positives = 47/207 (22%), Gaps = 20/207 (9%)
Query: 150 DECNLMPNMC-NHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYIN 208
ECN + C N+G C G C C GF+ + C E C
Sbjct: 196 PECNHLCTACMNNGVCHEDTG--ECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCK 253
Query: 209 ECEEMPEICGSGTCENNIGSFSC-RYINECEEMPEICGSGTCENN---IGSFSCRCEDGY 264
+C C + P+ +C N C C G+
Sbjct: 254 SYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGW 313
Query: 265 SVKPAEGPACTDENECTMRTHNCDDNADCINNPVNKTGTRCVDIDECATSIQRCGE---- 320
G C E M D N T+ +
Sbjct: 314 Q-----GLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTLVKPDG 368
Query: 321 ----GFCVNDVGTYHCVCPDGYMLLPS 343
N + + +LP
Sbjct: 369 TVLHPKDFNHTDHFSVAIFTIHRILPP 395
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 41.2 bits (96), Expect = 0.002
Identities = 49/298 (16%), Positives = 74/298 (24%), Gaps = 53/298 (17%)
Query: 768 NECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNL 827
E + + + ++ C+C + C + N CG C
Sbjct: 410 KEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFE----CGVCRCGPG 465
Query: 828 NGGFECTCSEG-YAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQC 886
G +C CSE Y P C SP C +R G C G QC
Sbjct: 466 WLGSQCECSEEDYRPSQQDEC---------SPREGQPVCSQR-GECLCG---------QC 506
Query: 887 TCANGYTLNTARDSC-VDIDECARHPNI--CNNGTCVNAIGSFKCHCYAGFK------LS 937
C + C D C R+ +G C C C + + +
Sbjct: 507 VCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCG----DCLCDSDWTGYYCNCTT 562
Query: 938 HNNDCIGNCTDINECESPQACLYGNCTNT----LGSNCTDINECESPQACLYGNCTNTLG 993
+ C+ + C C G+C G C C C
Sbjct: 563 RTDTCMSSNG--LLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTF-KKEC----- 614
Query: 994 SFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNT-FGSFMCSCQDGFKL 1050
C + +E E + + G C F+
Sbjct: 615 ---VECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNCTYKNEDDCVVRFQY 669
Score = 33.5 bits (76), Expect = 0.46
Identities = 37/207 (17%), Positives = 59/207 (28%), Gaps = 24/207 (11%)
Query: 201 CGSGTYINECEEMPEICGSGTCENNIG-SFSCRYINECEEMPEICGSGTCENNIGSFSCR 259
C + + S + +C+ E G+GT E + CR
Sbjct: 406 CPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGV----CR 461
Query: 260 CEDGYS------VKPAEGPACTDENECTMRTHNCDDNADCINN----PVNKTGTRCVDID 309
C G+ + P+ DE C +C+ + G
Sbjct: 462 CGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKITGKYC 521
Query: 310 ECATSIQRCGEGFCVNDVGT---YHCVCPDGYMLLPSGKECIDMRRELCYLNYTDGLCSL 366
EC +G + G C+C + G C R ++ LCS
Sbjct: 522 ECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWT----GYYCNCTTRTDTCMSSNGLLCSG 577
Query: 367 PMSNEQTRMVCCCSMGQSWGKPCQPCP 393
+ C C S+G C+ CP
Sbjct: 578 R--GKCECGSCVCIQPGSYGDTCEKCP 602
Score = 31.2 bits (70), Expect = 1.9
Identities = 45/281 (16%), Positives = 67/281 (23%), Gaps = 48/281 (17%)
Query: 812 CLSIPNICGNGTCTNLNGGFE------CTCSEGYAPGPLGSCAILLTLPPISPSTDIDEC 865
CL+ I G +C L G + +C
Sbjct: 374 CLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDC 433
Query: 866 ---YERPGICANGDCANFQGSF---QCTCANGYT-------LNTARDSCVDIDECARHPN 912
+ + C N G+F C C G+ R S D
Sbjct: 434 DCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQP 493
Query: 913 IC-NNGTCVNAIGSFKCHCYAGFKLSHN------NDCIGNCTDINECESPQACLYGNC-- 963
+C G C+ +C C++ +D C C G+C
Sbjct: 494 VCSQRGECLCG----QCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLC 549
Query: 964 ------------TNTLGSNCTDINECESPQACLYGNCTNT----LGSFSCTCPPNYQLTP 1007
T T ++ C C G+C G CP
Sbjct: 550 DSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACT 609
Query: 1008 AGNACVVLEDINECEEHDNICENGHCTNTFGSFMCSCQDGF 1048
CV + + HD N +C + S G
Sbjct: 610 FKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGK 650
Score = 29.7 bits (66), Expect = 6.4
Identities = 48/307 (15%), Positives = 81/307 (26%), Gaps = 42/307 (13%)
Query: 91 GDNVITRWCVCDEGFRGDGYSCEDIDECTDNTNYCDYILLCGSKPGEFMNPMTNKTEEID 150
+ VI C GD S + + KP F + + +
Sbjct: 376 NNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKS--FTIKPVGFKDSLIVQVTFDC 433
Query: 151 ECN------LMPNMCNHGTCMNTPGSFHCQCNRGFL-----YDSDTHQCIDINECEEMPE 199
+C + CN+G G C+C G+L + ++ +EC
Sbjct: 434 DCACQAQAEPNSHRCNNGNGTFECG--VCRCGPGWLGSQCECSEEDYRPSQQDECSPREG 491
Query: 200 --------ICGSGTYINECEEMPEICGSGTCENNIGSFSCRYINECEEMPEICGSGTCEN 251
C G + + +I G CE + S C G G C
Sbjct: 492 QPVCSQRGECLCGQCVCHSSDFGKITGK-YCECDDFSCVRYKGEMC------SGHGQCSC 544
Query: 252 NIGSFSCRCEDGYS----VKPAEGPACTDENECTMRTHNCDDNADCINNPVNKTGTRCVD 307
C C+ ++ C N + C+ G C
Sbjct: 545 G----DCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTC-- 598
Query: 308 IDECATSIQRCGE-GFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYTDGLCSL 366
++C T C CV D ++ I+ +EL C+
Sbjct: 599 -EKCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNCTY 657
Query: 367 PMSNEQT 373
++
Sbjct: 658 KNEDDCV 664
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 41.3 bits (96), Expect = 0.002
Identities = 42/248 (16%), Positives = 68/248 (27%), Gaps = 19/248 (7%)
Query: 99 CVCDEGFRGDGYSCEDID------ECTDNTNYCDYILLCGSKPGEFMNPMTNKTEEIDEC 152
C F+GD C + EC ++ CD C K E T DE
Sbjct: 163 CRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEE--NCAVATCRPDEF 220
Query: 153 NLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINECEE 212
C+ G C+ GS C SD C+++ CE + EC
Sbjct: 221 -----QCSDGNCI--HGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHS---GECIT 270
Query: 213 MPEIC-GSGTCENNIGSFSCRYINECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEG 271
+ ++C + C + S C + + C C DG+ +
Sbjct: 271 LDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR 330
Query: 272 PACTDENECTMRTHNCDDNADCINNPVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYH 331
DE + N + + G + + ++ F N
Sbjct: 331 CEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRK 390
Query: 332 CVCPDGYM 339
Sbjct: 391 MTLDRSEY 398
Score = 37.5 bits (86), Expect = 0.023
Identities = 45/319 (14%), Positives = 78/319 (24%), Gaps = 49/319 (15%)
Query: 101 CDEGFRGDGYSCEDIDECTDNTNYCDYILLCGSKPGEFMNPMTNKTEEIDECNLMPNMCN 160
C +C CD C E P+ C CN
Sbjct: 83 CPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVL-------TCGPASFQCN 135
Query: 161 HGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINECEEMPEICGSG 220
TC+ + + D +C + + C + + C SG
Sbjct: 136 SSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEF---------HCLSG 186
Query: 221 TCENNIGSFSCRYINECEEMPEICGSGTCENNIGSFSCR----------------CEDGY 264
C + S+ C +C++ + F C C+D
Sbjct: 187 ECIH--SSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMS 244
Query: 265 --------SVKPAEGPACTDENECTMRTHNCDDNADCINNPVNKTGTRCVDIDECATSIQ 316
++ EC C+ DC + + + +EC +
Sbjct: 245 DEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDW--SDEPIKECGTNECLDNNG 302
Query: 317 RCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYTDGLCSLPMSNEQTRMV 376
C C + Y C+CPDG+ L + + C D+ + +
Sbjct: 303 GC-SHVCNDLKIGYECLCPDGFQ-LVAQRRCEDID---ECQDPDTCSQLCVNLEGGYKCQ 357
Query: 377 CCCSMGQSWGKPCQPCPPP 395
C
Sbjct: 358 CEEGFQLDPHTKACKAVGS 376
Score = 36.7 bits (84), Expect = 0.045
Identities = 55/292 (18%), Positives = 78/292 (26%), Gaps = 21/292 (7%)
Query: 99 CVCDEGFRGDGYSCEDIDECTDNTNYCDYILLCGSKPGEFMNPMTNK---TEEIDECNLM 155
C G + C CD C E+ + C+
Sbjct: 120 ASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAF 179
Query: 156 PNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINECEEMPE 215
C G C+ S+ C SD C + C C G C
Sbjct: 180 EFHCLSGECI--HSSWRCDGGPDCKDKSDEENC-AVATCRPDEFQCSDG----NCIHGSR 232
Query: 216 IC-GSGTCENNIGSFSCRYINECEEMPEI-CGSGTC--ENNIGSFSCRCEDGYSVKPAEG 271
C C++ C + CE + C SG C + + + + C D E
Sbjct: 233 QCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC 292
Query: 272 PACTDENECTMRTHNCDDNA-----DCINNPVNKTGTRCVDIDECATSIQRCGEGFCVND 326
+ +H C+D C + RC DIDEC CVN
Sbjct: 293 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC--QDPDTCSQLCVNL 350
Query: 327 VGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYTDGLCSLPMSNEQTRMVCC 378
G Y C C +G+ L P K C + +
Sbjct: 351 EGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLI 402
Score = 34.0 bits (77), Expect = 0.29
Identities = 42/247 (17%), Positives = 71/247 (28%), Gaps = 31/247 (12%)
Query: 819 CGNGTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGIC-ANGDC 877
C +G C ++ F C G + +LT P S + C + C + DC
Sbjct: 95 CHDGKC--ISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDC 152
Query: 878 ANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLS 937
+ + C Y C + C +G C++ S++C
Sbjct: 153 EDGSDEWPQRCRGLYVFQGDSSPCSAFEFH------CLSGECIH--SSWRCDGGPDC--- 201
Query: 938 HNNDCIGNCTDINECESPQACLYGNCTNTL--------------GSNCTDINECESPQAC 983
+ NC C GNC + C ++ CE P
Sbjct: 202 KDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKF 261
Query: 984 LYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFMCS 1043
+ C + + + E +N + C + + C
Sbjct: 262 KCHSGECITLDKVCNMARDC---RDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECL 318
Query: 1044 CQDGFKL 1050
C DGF+L
Sbjct: 319 CPDGFQL 325
Score = 33.2 bits (75), Expect = 0.46
Identities = 40/314 (12%), Positives = 78/314 (24%), Gaps = 17/314 (5%)
Query: 731 CTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGGECINTDGSYR 790
TC P + C++ + G D + C+ C GECI S+R
Sbjct: 137 STCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECI--HSSWR 194
Query: 791 CECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGGFECTCSEGYAPGPLGSCAIL 850
C+ D++ + C C +G C ++G +C
Sbjct: 195 CDGGPDCK-DKSDEENCAVATCRPDEFQCSDGNC--IHGSRQCDREYDCKDMS------- 244
Query: 851 LTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARH 910
+ C +G+C C A +
Sbjct: 245 ---DEVGCVNVTLCEGPNKFKCHSGEC--ITLDKVCNMARDCRDWSDEPIKECGTNECLD 299
Query: 911 PNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSN 970
N + C + ++C C GF+L C + Q C+
Sbjct: 300 NNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCE 359
Query: 971 CTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICEN 1030
+ + G+ + + + + +
Sbjct: 360 EGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNR 419
Query: 1031 GHCTNTFGSFMCSC 1044
+ ++ +CS
Sbjct: 420 IYWSDLSQRMICST 433
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 36.6 bits (85), Expect = 0.002
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 159 CNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINEC 194
C+ C S C C RG+ + CI
Sbjct: 11 CDQ-FCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
Score = 36.2 bits (84), Expect = 0.002
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 877 CANFQGSFQCTCANGYTLNTARDSCVDIDECA 908
C Q S C+CA GYTL +C+
Sbjct: 15 CHEEQNSVVCSCARGYTLADNGKACIPTGPYP 46
Score = 35.8 bits (83), Expect = 0.003
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 782 CINTDGSYRCECPAGYVKDETGKICIDDNEC 812
C S C C GY + GK CI
Sbjct: 15 CHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
Score = 35.4 bits (82), Expect = 0.005
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 592 CRNNIGSFFCECLQGYTLASEGQYCRDVDEC 622
C S C C +GYTLA G+ C
Sbjct: 15 CHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
Score = 35.1 bits (81), Expect = 0.007
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQE 748
C S +C+C GY L+ + +C
Sbjct: 15 CHEEQNSVVCSCARGYTLADNGKACIP 41
Score = 32.7 bits (75), Expect = 0.039
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 320 EGFCVNDVGTYHCVCPDGYMLLPSGKECID 349
+ FC + + C C GY L +GK CI
Sbjct: 12 DQFCHEEQNSVVCSCARGYTLADNGKACIP 41
Score = 29.7 bits (67), Expect = 0.57
Identities = 11/47 (23%), Positives = 13/47 (27%), Gaps = 9/47 (19%)
Query: 981 QACLYGN------CTNTLGSFSCTCPPNYQLTPAGNACVVLEDINEC 1021
+ C N C S C+C Y L G AC
Sbjct: 2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC---IPTGPY 45
Score = 27.7 bits (62), Expect = 2.7
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 7/42 (16%)
Query: 915 NNG----TCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINEC 952
+NG C S C C G+ L+ N C
Sbjct: 7 DNGDCDQFCHEEQNSVVCSCARGYTLADNGK---ACIPTGPY 45
Score = 27.3 bits (61), Expect = 4.0
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 1032 HCTNTFGSFMCSCQDGFKL 1050
C S +CSC G+ L
Sbjct: 14 FCHEEQNSVVCSCARGYTL 32
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 40.6 bits (95), Expect = 0.002
Identities = 50/239 (20%), Positives = 65/239 (27%), Gaps = 67/239 (28%)
Query: 819 CGNGTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCA 878
+ T + EC PG C NG
Sbjct: 121 VDVIVMNSEGNTILKTPQNAI----------------FFKTCQQAEC---PGGCRNG--G 159
Query: 879 NFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGF---- 934
C C +G+ C ++ P N G CV C C GF
Sbjct: 160 FCNERRICECPDGFH----GPHC---EKALCTPRCMNGGLCVT---PGFCICPPGFYGVN 209
Query: 935 --KLSHNNDCI--GNCTDINECESPQACLYGNCTNTLGSNCTDINECESPQACL-YGNCT 989
K + + C G C +C C G G C +I++C P C G C
Sbjct: 210 CDKANCSTTCFNGGTCFYPGKCI----CPPG----LEGEQC-EISKCPQP--CRNGGKCI 258
Query: 990 NTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFMCSCQDGF 1048
C C YQ G+ C C H G C C CQ+G+
Sbjct: 259 G---KSKCKCSKGYQ----GDLCSKPVCEPGCGAH------GTCHE---PNKCQCQEGW 301
Score = 40.2 bits (94), Expect = 0.002
Identities = 43/230 (18%), Positives = 61/230 (26%), Gaps = 59/230 (25%)
Query: 716 CPSPGKCQNVMGSFICTCPPGYR---------LSPDKN--SCQEDFAKLCPEGVGRGDKG 764
+ + + T +N C E CP+G G
Sbjct: 120 EVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGF----HG 175
Query: 765 EDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTC 824
+ P GG C+ C CP G+ G C ++ GTC
Sbjct: 176 PHCEKALCTPRCMNGGLCVT---PGFCICPPGF----YGVNC---DKANCSTTCFNGGTC 225
Query: 825 TNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSF 884
+C C G +I +C P C NG G
Sbjct: 226 FY---PGKCICPPGLE----------------GEQCEISKC---PQPCRNG--GKCIGKS 261
Query: 885 QCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGF 934
+C C+ GY + E +GTC KC C G+
Sbjct: 262 KCKCSKGY---QGDLCSKPVCEP----GCGAHGTCHE---PNKCQCQEGW 301
Score = 32.5 bits (74), Expect = 0.77
Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 21/130 (16%)
Query: 215 EICGSGTCENNIGSFSCRYINECEEMPEI-CGSGTCENNIGSFSCRCEDGYSVKPAEGPA 273
+ G+ + ++ + + + + + + ++
Sbjct: 91 PLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIF-----FKT 145
Query: 274 CTDENECTMRTHNCDDNADCINN-----PVNKTGTRCVDIDECATSIQRCGEGFCVNDVG 328
C + EC C + C P G C ++ + + G CV
Sbjct: 146 C-QQAEC---PGGCRNGGFCNERRICECPDGFHGPHC---EKALCTPRCMNGGLCVT--- 195
Query: 329 TYHCVCPDGY 338
C+CP G+
Sbjct: 196 PGFCICPPGF 205
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 0.003
Identities = 79/605 (13%), Positives = 160/605 (26%), Gaps = 212/605 (35%)
Query: 110 YSCEDI-----DECTDNTNYCDYILLCGSKPGEFMNPMTNKTEEIDECNLMPN------- 157
Y +DI D DN + C + + + EEID + +
Sbjct: 16 YQYKDILSVFEDAFVDNFD-CKDVQ-------DMPKSIL-SKEEIDHIIMSKDAVSGTLR 66
Query: 158 ----MCNHGTCMNTPGSF---HCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINEC 210
+ + F + N FL + + M YI +
Sbjct: 67 LFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM--------YIEQR 116
Query: 211 EEMPEICGSGTCENNIGSFSCRYINECEEM-----------PE----ICGSGTCENNIGS 255
+ + N+ F+ ++ + P I G GS
Sbjct: 117 DRL---------YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL------GS 161
Query: 256 FSCRCEDGYSVKPAEGPACTDEN-ECTMRTHNCDDNADCINNPVNKTGTRCVDIDECATS 314
G + + C +C M + +
Sbjct: 162 -------GKTWVALD--VCLSYKVQCKM------------DFKI---------------- 184
Query: 315 IQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYL---NYT---DGLCSLPM 368
F +N + +C P+ ++M ++L Y N+T D ++ +
Sbjct: 185 -------FWLN-LK--NCNSPE---------TVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 369 SNEQTRMVCCCSMGQSWGKPCQPCPPPGSRDYILLCGKDFAKLC---------PEGVGRG 419
+ + LL K + C +
Sbjct: 226 RIHSIQ----------------------AELRRLLKSKPYEN-CLLVLLNVQNAKAW--- 259
Query: 420 DKGEDLNECRTVITVRDSYFTEQWRDAK-KNQRLGFCYRSLTNGRCVLPTGPALLMEVTR 478
+L+ C+ ++T R T+ A + L +LT +LL++
Sbjct: 260 -NAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-----PDEVKSLLLKYLD 312
Query: 479 MDCCCTMGMAWGPQ--CQLCPTRGSQTCEDINECLELSNQCAFR---CHNISMSVSNSLA 533
P+ P R S E I + L + ++ C ++ + +SL
Sbjct: 313 CRPQDL------PREVLTTNPRRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIESSLN 364
Query: 534 CALTPVLTRKISMSVSNSLACALTPVLTRKVATPVAVI----NDCIDLDECRMMSYLCRN 589
L P RK+ +S V P ++ D I D +++ L +
Sbjct: 365 V-LEPAEYRKMFDRLS---------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 590 G--RCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVNKRESRCY--LDTEEEEEEEEE 645
+ + + L + ++ +++ Y T + ++
Sbjct: 415 SLVEKQPKESTIS---IPSIYL----ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 646 EEGGY 650
Y
Sbjct: 468 YLDQY 472
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 35.4 bits (82), Expect = 0.004
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 782 CINTDGSYRCECPAGYVKDETGKICIDDNEC 812
C RC C GYV + K C+
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
Score = 35.0 bits (81), Expect = 0.005
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQ 747
C+ C+C GY L D SC
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCV 37
Score = 33.9 bits (78), Expect = 0.013
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 159 CNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINEC 194
C+ C C C G++ D+ C+
Sbjct: 8 CDQ-FCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
Score = 33.1 bits (76), Expect = 0.025
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 877 CANFQGSFQCTCANGYTLNTARDSCVDIDECA 908
C + +C+CA+GY L SCV +
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVSTERFP 43
Score = 33.1 bits (76), Expect = 0.027
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 320 EGFCVNDVGTYHCVCPDGYMLLPSGKECID 349
+ FC + C C GY+L K C+
Sbjct: 9 DQFCREERSEVRCSCAHGYVLGDDSKSCVS 38
Score = 32.3 bits (74), Expect = 0.055
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 592 CRNNIGSFFCECLQGYTLASEGQYCRDVDEC 622
CR C C GY L + + C +
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
Score = 28.1 bits (63), Expect = 1.8
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 988 CTNTLGSFSCTCPPNYQLTPAGNACV 1013
C C+C Y L +CV
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCV 37
Score = 27.3 bits (61), Expect = 3.4
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 1032 HCTNTFGSFMCSCQDGFKL 1050
C CSC G+ L
Sbjct: 11 FCREERSEVRCSCAHGYVL 29
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 39.5 bits (91), Expect = 0.005
Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 2/79 (2%)
Query: 149 IDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYIN 208
++EC C+ G C N+ G+F C C G+ D C + +
Sbjct: 1 VNECA-EEGYCSQG-CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQV 58
Query: 209 ECEEMPEICGSGTCENNIG 227
EN I
Sbjct: 59 LPHRSEYTLLLNNLENAIA 77
Score = 38.3 bits (88), Expect = 0.012
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 767 LNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTN 826
+NECA C G C N++G+++C C AGY + C +
Sbjct: 1 VNECA-EEGYCSQG-CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQV 58
Query: 827 LNGGFECTCSEGYAPGPLG 845
L E T +
Sbjct: 59 LPHRSEYTLLLNNLENAIA 77
Score = 37.2 bits (85), Expect = 0.025
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 974 INECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNAC 1012
+NEC C G CTN+ G+F C C Y+L P +C
Sbjct: 1 VNECAEEGYCSQG-CTNSEGAFQCWCEAGYELRPDRRSC 38
Score = 37.2 bits (85), Expect = 0.026
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 308 IDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYTDGLCSLP 367
++ECA C C N G + C C GY L P + C + E L
Sbjct: 1 VNECAEE-GYC-SQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQV 58
Query: 368 MSNEQTRMVCCCSMGQSWG 386
+ + + ++ +
Sbjct: 59 LPHRSEYTLLLNNLENAIA 77
Score = 36.4 bits (83), Expect = 0.048
Identities = 24/113 (21%), Positives = 35/113 (30%), Gaps = 3/113 (2%)
Query: 862 IDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVN 921
++EC G C+ G C N +G+FQC C GY L R SC +
Sbjct: 1 VNEC-AEEGYCSQG-CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQV 58
Query: 922 AIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDI 974
+ L + + S N GSN ++
Sbjct: 59 LPHRSEYTLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 110
Score = 34.5 bits (78), Expect = 0.17
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 234 INECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDD 289
+NEC E C S C N+ G+F C CE GY ++P E + N D
Sbjct: 1 VNECAE-EGYC-SQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRID 54
Score = 34.5 bits (78), Expect = 0.19
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 716 CPSPG----KCQNVMGSFICTCPPGYRLSPDKNSCQ 747
C G C N G+F C C GY L PD+ SC+
Sbjct: 4 CAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCK 39
Score = 32.5 bits (73), Expect = 0.66
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 1018 INECEEHDNICENGHCTNTFGSFMCSCQDGFKL 1050
+NEC E C CTN+ G+F C C+ G++L
Sbjct: 1 VNECAEEG-YCSQ-GCTNSEGAFQCWCEAGYEL 31
Score = 30.2 bits (67), Expect = 3.2
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQE 748
C ++ C CP G+R E
Sbjct: 318 CLPSGQNYTCACPTGFRKINSHACALE 344
Score = 30.2 bits (67), Expect = 3.2
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 571 INDCIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDEC 622
+N+C + C C N+ G+F C C GY L + + C+ +
Sbjct: 1 VNECAEEGYCSQG--------CTNSEGAFQCWCEAGYELRPDRRSCKALGPE 44
Score = 30.2 bits (67), Expect = 3.8
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 907 CARHPNICNNGT----CVNAIGSFKCHCYAGFKLSHNNDCIGNC 946
++ NNG C+ + ++ C C GF+ +++ C
Sbjct: 302 AGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSHACALEV 345
Score = 29.8 bits (66), Expect = 4.8
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 322 FCVNDVGTYHCVCPDGYMLLPSGKECID 349
C+ Y C CP G+ + S ++
Sbjct: 317 LCLPSGQNYTCACPTGFRKINSHACALE 344
Score = 29.1 bits (64), Expect = 9.2
Identities = 17/122 (13%), Positives = 32/122 (26%), Gaps = 9/122 (7%)
Query: 898 RDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNC-----TDINEC 952
++D R I AI F+ Y + I + +
Sbjct: 226 VIERANLDGSHRKAVISQGLPHPFAITVFEDSLYW---TDWHTKSINSANKFTGKNQEII 282
Query: 953 ESPQACLYGNCTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNAC 1012
+ T N C C + +++C CP ++ +AC
Sbjct: 283 RNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKIN-SHAC 341
Query: 1013 VV 1014
+
Sbjct: 342 AL 343
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 38.9 bits (90), Expect = 0.007
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 865 CYERPGICANGDCANF------QGSFQCTCANGYTLNTARDSCVDIDECARH 910
P NG C++ + +QC C G L +C D + H
Sbjct: 265 NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSHHHH 316
Score = 36.6 bits (84), Expect = 0.039
Identities = 20/138 (14%), Positives = 38/138 (27%), Gaps = 21/138 (15%)
Query: 900 SCVDIDECARHPNICNNGTCVNAIGSFKCHCY-----AGFKLSHNNDCIGNCTDINECES 954
++D R + + A+ F+ Y L+ N +I+
Sbjct: 191 HKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIF 250
Query: 955 PQACLYGNCTNTLGSNCTDINECESPQACLYGNCTN------TLGSFSCTCPPNYQLTPA 1008
++ +P G C++ + C CP +L
Sbjct: 251 SPMDIHAFS-------QQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLEN 303
Query: 1009 GNACVVLEDINECEEHDN 1026
G C +D N H +
Sbjct: 304 GKTC---KDGNSHHHHHH 318
Score = 36.2 bits (83), Expect = 0.047
Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 6/84 (7%)
Query: 545 SMSVSNSLACALTPVLTRKVATPVAVINDCIDLDECRMMSYLCRNGRC------RNNIGS 598
S+ N + + +P+ + NG C
Sbjct: 230 SILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF 289
Query: 599 FFCECLQGYTLASEGQYCRDVDEC 622
+ C C G L G+ C+D +
Sbjct: 290 YQCACPTGVKLLENGKTCKDGNSH 313
Score = 35.8 bits (82), Expect = 0.058
Identities = 14/46 (30%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 773 MPSACQGGECIN------TDGSYRCECPAGYVKDETGKICIDDNEC 812
P G C + Y+C CP G E GK C D N
Sbjct: 268 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSH 313
Score = 35.0 bits (80), Expect = 0.11
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 152 CNLMPNMCNHGTCMNTPGS--FHCQCNRGFLYDSDTHQCIDINEC 194
C + C+H C+ +P + C C G + C D N
Sbjct: 270 CGIDNGGCSH-LCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSH 313
Score = 34.3 bits (78), Expect = 0.16
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 320 EGFCVND--VGTYHCVCPDGYMLLPSGKECIDM 350
C+ Y C CP G LL +GK C D
Sbjct: 278 SHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG 310
Score = 33.9 bits (77), Expect = 0.24
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 695 HKTLCPGGSGYRPNSATR-EGIC-PSPGKCQNVMGSFICTCPPGYRLSPDKNSCQED 749
+ P + +C SP K + C CP G +L + +C++
Sbjct: 259 SQQRQPNATNPCGIDNGGCSHLCLMSPVK-----PFYQCACPTGVKLLENGKTCKDG 310
Score = 32.4 bits (73), Expect = 0.66
Identities = 11/55 (20%), Positives = 15/55 (27%), Gaps = 7/55 (12%)
Query: 237 CEEMPEICGSGTCEN------NIGSFSCRCEDGYSVKPAEGPACTDENECTMRTH 285
P +G C + + C C G + G C D N H
Sbjct: 265 NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLE-NGKTCKDGNSHHHHHH 318
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 37.6 bits (87), Expect = 0.008
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 859 STDIDECYERPG--ICANGDCANFQGSFQCTCANGYTLNTARDSCVD 903
+ DIDEC PG + C N G F C+C GY L+ + +C +
Sbjct: 121 AEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
Score = 36.8 bits (85), Expect = 0.013
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 146 TEEIDECNLMP--NMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDIN 192
E+IDEC + P C N G F+C C G++ + C + +
Sbjct: 121 AEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQS 169
Score = 36.5 bits (84), Expect = 0.016
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 714 GICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQE 748
C N +G F C+C GY L +K +C E
Sbjct: 133 EAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
Score = 35.7 bits (82), Expect = 0.028
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 303 TRCVDIDECATS--IQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECID 349
DIDEC + + C N +G ++C C GY+L + + C +
Sbjct: 119 YAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
Score = 35.7 bits (82), Expect = 0.035
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 574 CIDLDECRMM--SYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRD 618
D+DEC++ + C N++G F+C C GY L + C +
Sbjct: 121 AEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
Score = 35.3 bits (81), Expect = 0.041
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 969 SNCTDINECESPQA---CLYGNCTNTLGSFSCTCPPNYQLTPAGNAC 1012
DI+EC+ +C N LG F C+C Y L C
Sbjct: 119 YAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTC 165
Score = 34.9 bits (80), Expect = 0.057
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 765 EDLNECALMPSA--CQGGECINTDGSYRCECPAGYVKDETGKICIDDN 810
ED++EC + P C N G + C C AGYV + C + +
Sbjct: 122 EDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQS 169
Score = 34.1 bits (78), Expect = 0.092
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 897 ARDSCVDIDECARHP--NICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDIN 950
A + DIDEC P + C N +G F C C AG+ L N C++ +
Sbjct: 117 AFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKR---TCSEQS 169
Score = 31.8 bits (72), Expect = 0.57
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 1010 NACVVLEDINECE--EHDNICENGHCTNTFGSFMCSCQDGFKL 1050
A EDI+EC+ + + HC N G F CSC+ G+ L
Sbjct: 116 EAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVL 158
Score = 31.4 bits (71), Expect = 0.79
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 228 SFSCRYINECEEMP--EICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDEN 278
++ I+EC+ P C N++G F C C GY + + C++++
Sbjct: 118 FYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNK-RTCSEQS 169
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 39.0 bits (90), Expect = 0.009
Identities = 11/75 (14%), Positives = 22/75 (29%)
Query: 120 DNTNYCDYILLCGSKPGEFMNPMTNKTEEIDECNLMPNMCNHGTCMNTPGSFHCQCNRGF 179
+ I + + +++ +EC C+H G F C C +
Sbjct: 236 TSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHY 295
Query: 180 LYDSDTHQCIDINEC 194
++D C
Sbjct: 296 SLNADNRTCSAPTTF 310
Score = 33.2 bits (75), Expect = 0.50
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 328 GTYHCVCPDGYMLLPSGKECIDMR 351
GT C CP +LL C +
Sbjct: 599 GTTRCSCPMHLVLLQDELSCGGTK 622
Score = 33.2 bits (75), Expect = 0.53
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 727 GSFICTCPPGYRLSPDKNSCQE 748
G+ C+CP L D+ SC
Sbjct: 599 GTTRCSCPMHLVLLQDELSCGG 620
Score = 32.5 bits (73), Expect = 0.82
Identities = 13/75 (17%), Positives = 21/75 (28%)
Query: 898 RDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQA 957
+ECA C++ +G F C C A + L+ +N T A
Sbjct: 259 SSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSA 318
Query: 958 CLYGNCTNTLGSNCT 972
+
Sbjct: 319 INRMVIDEQQSPDII 333
Score = 32.5 bits (73), Expect = 1.00
Identities = 16/79 (20%), Positives = 27/79 (34%)
Query: 283 RTHNCDDNADCINNPVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLP 342
+ D + + + +R +ECA+S C VG + C CP Y L
Sbjct: 240 NRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNA 299
Query: 343 SGKECIDMRRELCYLNYTD 361
+ C L + +
Sbjct: 300 DNRTCSAPTTFLLFSQKSA 318
Score = 31.7 bits (71), Expect = 1.5
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
Query: 859 STDIDECYERPGICANGDCANF-----QGSFQCTCANGYTLNTARDSCVDIDECARH 910
++ E + P NG C++ G+ +C+C L SC H
Sbjct: 571 ELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGGTKHHHHH 627
Score = 31.3 bits (70), Expect = 2.0
Identities = 23/127 (18%), Positives = 36/127 (28%), Gaps = 7/127 (5%)
Query: 781 ECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGGFECTCSEGYA 840
E N G R + G + + + N G T +G+
Sbjct: 191 ESSNMLGLNREVIADD-LPHPFG-LTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHL 248
Query: 841 PGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDS 900
+ S + +EC G C++ A G F C C Y+LN +
Sbjct: 249 DYVMDILV-----FHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRT 303
Query: 901 CVDIDEC 907
C
Sbjct: 304 CSAPTTF 310
Score = 30.9 bits (69), Expect = 2.4
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 993 GSFSCTCPPNYQLTPAGNACVVLEDINECEEH 1024
G+ C+CP + L +C + + H
Sbjct: 599 GTTRCSCPMHLVLLQDELSCGGTK--HHHHHH 628
Score = 30.2 bits (67), Expect = 4.0
Identities = 10/62 (16%), Positives = 23/62 (37%)
Query: 574 CIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVNKRESRCY 633
+EC + C + +G F C C Y+L ++ + C +++ +
Sbjct: 262 QSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINR 321
Query: 634 LD 635
+
Sbjct: 322 MV 323
Score = 29.8 bits (66), Expect = 6.1
Identities = 22/135 (16%), Positives = 35/135 (25%), Gaps = 11/135 (8%)
Query: 900 SCVDIDECARHPNICNNGTCVNAIGSFKCHCY-----AGFKLSHNNDCIGNCTDINECES 954
++ R I ++ + ++ + Y N N T I
Sbjct: 191 ESSNMLGLNRE-VIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLD 249
Query: 955 PQACLYGNCTNTLGSNCTDINECESPQACLYGNCTNT-LGSFSCTCPPNYQLTPAGNACV 1013
+ S + NEC S C +G F C CP +Y L C
Sbjct: 250 Y----VMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCS 305
Query: 1014 VLEDINECEEHDNIC 1028
+ I
Sbjct: 306 APTTFLLFSQKSAIN 320
Score = 29.4 bits (65), Expect = 6.9
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 786 DGSYRCECPAGYVKDETGKICIDDNEC 812
DG+ RC CP V + C
Sbjct: 598 DGTTRCSCPMHLVLLQDELSCGGTKHH 624
Score = 29.4 bits (65), Expect = 8.0
Identities = 14/71 (19%), Positives = 21/71 (29%)
Query: 742 DKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGGECINTDGSYRCECPAGYVKDE 801
++ Q + V + NECA C G + C CPA Y +
Sbjct: 240 NRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNA 299
Query: 802 TGKICIDDNEC 812
+ C
Sbjct: 300 DNRTCSAPTTF 310
Score = 29.0 bits (64), Expect = 9.7
Identities = 10/51 (19%), Positives = 12/51 (23%), Gaps = 5/51 (9%)
Query: 579 ECRMMSYLCRNGRCR-----NNIGSFFCECLQGYTLASEGQYCRDVDECKE 624
E R NG C G+ C C L + C
Sbjct: 576 EYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGGTKHHHH 626
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 39.1 bits (90), Expect = 0.010
Identities = 17/94 (18%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Query: 838 GYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTA 897
G P L + A+ LTL + + A S + + +
Sbjct: 126 GGLPPELRAAALKLTLASVREREPFKGWIRD--VRVQSSLALPVDSGEVKLDDEPPNSGG 183
Query: 898 RDSCVDIDECARHPNIC-NNGTCVNAIGSFKCHC 930
C +E +C N G C C C
Sbjct: 184 GSPCEAGEEGE--GGVCLNGGVCSVVDDQAVCDC 215
Score = 35.2 bits (80), Expect = 0.16
Identities = 19/127 (14%), Positives = 31/127 (24%), Gaps = 16/127 (12%)
Query: 766 DLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGN-GTC 824
+ +P + + + P C E +C N G C
Sbjct: 158 RVQSSLALPVDSGEVKLDDEPPNSGGGSP-----------CEAGEEGE--GGVCLNGGVC 204
Query: 825 TNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSF 884
+ ++ C CS G S + CY+ SF
Sbjct: 205 SVVDDQAVCDCSRTGFRGKDCSQGK--EEYIATFKGSEYFCYDLSQNPIQSSSDEITLSF 262
Query: 885 QCTCANG 891
+ NG
Sbjct: 263 KTLQRNG 269
Score = 32.5 bits (73), Expect = 1.0
Identities = 13/78 (16%), Positives = 19/78 (24%), Gaps = 7/78 (8%)
Query: 99 CVCDEGFRGDGYSCEDIDECTDNTNYCDYILLCGSKPGEFMNPMTNKTEEIDECNLMPNM 158
E F+G + + L P + E +E +
Sbjct: 144 VREREPFKGW-IRDVRVQSSLALPVDSGEVKLDDEPPNSGGG---SPCEAGEEGE--GGV 197
Query: 159 C-NHGTCMNTPGSFHCQC 175
C N G C C C
Sbjct: 198 CLNGGVCSVVDDQAVCDC 215
Score = 31.7 bits (71), Expect = 1.6
Identities = 12/43 (27%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 754 CPEGVGRGDKGEDLNECALMPSACQ-GGECINTDGSYRCECPA 795
P G G E E C GG C D C+C
Sbjct: 177 EPPNSGGGSPCEAGEEGE--GGVCLNGGVCSVVDDQAVCDCSR 217
Score = 31.0 bits (69), Expect = 3.1
Identities = 14/97 (14%), Positives = 24/97 (24%), Gaps = 4/97 (4%)
Query: 278 NECTMRTHNCDDNADCINNPVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDG 337
+ + P + G+ C +E + G G C C C
Sbjct: 160 QSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNG-GVCSVVDDQAVCDCSRT 218
Query: 338 YMLLPSGKECIDMRRELCYLNYTDGLCSLPMSNEQTR 374
GK+C + E +S +
Sbjct: 219 GF---RGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQ 252
Score = 30.6 bits (68), Expect = 3.5
Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 6/83 (7%)
Query: 871 ICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNIC-NNGTCVNAIGSFKCH 929
+ +G + + + G S C N C NNG C + + C
Sbjct: 589 LFIDGQSKDIRQMAEVQSTAGVK---PSCSRETAKPCL--SNPCKNNGMCRDGWNRYVCD 643
Query: 930 CYAGFKLSHNNDCIGNCTDINEC 952
C L + + +
Sbjct: 644 CSGTGYLGRSCEREATVLSYDGS 666
Score = 29.8 bits (66), Expect = 6.0
Identities = 18/110 (16%), Positives = 28/110 (25%), Gaps = 9/110 (8%)
Query: 201 CGSGTYINECEEMP----EICGSGTCENNIGSFSCRYINECEEMPEICGSGTCENNIGSF 256
+ +P E+ N+ G C E E + G G C
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNG-GVCSVVDDQA 211
Query: 257 SCRCED-GYSVKPAEGPACTDENECTMRTHNCDDNADCINNPVNKTGTRC 305
C C G+ K + C D + NP+ +
Sbjct: 212 VCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLS---QNPIQSSSDEI 258
Score = 29.4 bits (65), Expect = 9.4
Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 688 PAVGSDEHKTLCPGGSGYRPNSATREGICPSPGKCQNVMGSFICTCP-PGYRLSPDKNSC 746
V D+ GGS G+C + G C V +C C G+R
Sbjct: 170 GEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGK 229
Query: 747 QEDFAKLCPEG 757
+E A
Sbjct: 230 EEYIATFKGSE 240
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 37.9 bits (87), Expect = 0.018
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 320 EGFCVNDVGTYHCVCPDGYMLLPSGKECI 348
C+ C CP G+ L+ K CI
Sbjct: 589 SHLCLYRPQGLRCACPIGFELISDMKTCI 617
Score = 35.2 bits (80), Expect = 0.12
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSC 746
C C CP G+ L D +C
Sbjct: 592 CLYRPQGLRCACPIGFELISDMKTC 616
Score = 35.2 bits (80), Expect = 0.12
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 782 CINTDGSYRCECPAGYVKDETGKICI 807
C+ RC CP G+ K CI
Sbjct: 592 CLYRPQGLRCACPIGFELISDMKTCI 617
Score = 34.4 bits (78), Expect = 0.20
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Query: 115 IDECTDNTNYCDYILLCGSKPGEFMNPMTNKTEEIDECNLMPNMCNHGTCMNTPGSFHCQ 174
I+ + + I+ ++ + C C+H C+ P C
Sbjct: 544 IERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSH-LCLYRPQGLRCA 602
Query: 175 CNRGFLYDSDTHQCI 189
C GF SD CI
Sbjct: 603 CPIGFELISDMKTCI 617
Score = 34.0 bits (77), Expect = 0.27
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 988 CTNTLGSFSCTCPPNYQLTPAGNACVV 1014
C C CP ++L C+V
Sbjct: 592 CLYRPQGLRCACPIGFELISDMKTCIV 618
Score = 30.9 bits (69), Expect = 2.7
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 855 PISPSTDIDECYERPGICANGDCANF----QGSFQCTCANGYTLNTARDSCV 902
+ + P NG C++ +C C G+ L + +C+
Sbjct: 566 GLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCI 617
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 35.8 bits (82), Expect = 0.062
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 4/63 (6%)
Query: 688 PAVGSDEHKTLCPGGS----GYRPNSATREGICPSPGKCQNVMGSFICTCPPGYRLSPDK 743
P H P G ++ + +C + F C CP G L+ D
Sbjct: 252 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 311
Query: 744 NSC 746
SC
Sbjct: 312 RSC 314
Score = 33.5 bits (76), Expect = 0.30
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 328 GTYHCVCPDGYMLLPSGKECI 348
+ C CPDG +L + C+
Sbjct: 295 PKFTCACPDGMLLARDMRSCL 315
Score = 31.2 bits (70), Expect = 1.7
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 12/78 (15%)
Query: 937 SHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECESPQACL-YGNCTNTLGSF 995
+ + + ++ + C +N C + CL F
Sbjct: 249 LLSPEDMVLFHNLTQPRGVNWCERTTLSN---GGCQYL--------CLPAPQINPHSPKF 297
Query: 996 SCTCPPNYQLTPAGNACV 1013
+C CP L +C+
Sbjct: 298 TCACPDGMLLARDMRSCL 315
Score = 29.3 bits (65), Expect = 7.6
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 8/48 (16%)
Query: 768 NECALMPSACQG--------GECINTDGSYRCECPAGYVKDETGKICI 807
N C + G + + C CP G + + C+
Sbjct: 268 NWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.080
Identities = 49/278 (17%), Positives = 78/278 (28%), Gaps = 98/278 (35%)
Query: 360 TDGLCSLPMS---NEQTRMVCCCSMGQSWGKPCQPCPPPGS-RDYILLCGKDFAKLCPEG 415
D L S+P+S ++ + G PG R Y L G A +G
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT------PGELRSY--LKG---ATGHSQG 276
Query: 416 V------GRGDKGEDLNEC-RTVITVRDSYFTEQWRDAKKNQRLGFCYRS-LTNGRCVLP 467
+ D E R ITV F + +G R LP
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITV---LF---F--------IG--VRCYEAYPNTSLP 320
Query: 468 TGPALLMEVTRMDCCCTMGMAWGPQCQLCPTRGSQTCEDINECLELSNQCAFRCHNISMS 527
P++L + P L + +Q E + + + +N + +S
Sbjct: 321 --PSILED------SLENNEG-VPSPMLSISNLTQ--EQVQDYVNKTNSHLPAGKQVEIS 369
Query: 528 VSNSLACALTP---VLT---RKISMSVSNSLACALTPVLTRKVATPVAVINDCIDLDECR 581
+ N V++ + SL L L RK P LD+ R
Sbjct: 370 LVNG------AKNLVVSGPPQ--------SL-YGLNLTL-RKAKAP-------SGLDQSR 406
Query: 582 M----------MSYLCRNGRCRNNIGS-FFCECLQGYT 608
+ +L + S F L +
Sbjct: 407 IPFSERKLKFSNRFL--------PVASPFHSHLLVPAS 436
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 35.3 bits (80), Expect = 0.12
Identities = 31/175 (17%), Positives = 46/175 (26%), Gaps = 22/175 (12%)
Query: 840 APGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCANG-YTLNTAR 898
A GP + A L + S C R C + FQ NG
Sbjct: 1 AAGPGAAAARRLDESLSAGSVQRARCASR---CLSLQITRISAFFQHFQNNGSLVWCQNH 57
Query: 899 DSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINE------C 952
C E + C + C F + +C+ +C +
Sbjct: 58 KQCSKCLEPCKESGDLRKHQC-------QSFCEPLFP-KKSYECLTSCEFLKYILLVKQG 109
Query: 953 ESPQACLYGNCTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTP 1007
+ P +C NEC + C C+N G Y+ P
Sbjct: 110 DCPAPEKASGFAAACVESCEVDNECSGVKKC----CSNGCGHTCQVPKTLYKGVP 160
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 34.8 bits (80), Expect = 0.14
Identities = 19/160 (11%), Positives = 34/160 (21%), Gaps = 11/160 (6%)
Query: 854 PPISPSTDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNI 913
++ S +++C G G A C N
Sbjct: 4 SSVNLSPPLEQCVPDRGQQYQGRLAVTTHGLPCLAWASAQAKALSKHQDFNSAVQLVENF 63
Query: 914 C-NNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCT 972
C N + + F N C + E+ + G+ T
Sbjct: 64 CRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEE----ETGDGLDEDSDRAIEGATAT 119
Query: 973 DINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNAC 1012
Q + G C P ++ +
Sbjct: 120 S-----EYQTFFNPATFGS-GEADCGLRPLFEKKSLEDKT 153
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.20
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 8/38 (21%)
Query: 612 EGQYCRDVDECKEVNKRESRCYLDTEEEEE--EEEEEE 647
E + E E NK +R ++ ++ + +
Sbjct: 121 EEWN-QRQSEQVEKNKINNR-----IADKAFYQQPDAD 152
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 34.3 bits (78), Expect = 0.24
Identities = 31/210 (14%), Positives = 56/210 (26%), Gaps = 12/210 (5%)
Query: 99 CVCDEGFRGDGYSCEDIDECTDNTNYCDYILLCGSKPGEFMNPMTNKTEEIDECNLMPNM 158
CD + + T+ +++ + F + +T + EC
Sbjct: 376 GDCDGVQINVPITFQVKVTATECIQEQSFVI----RALGFTDIVTVQVLPQCECRCRDQS 431
Query: 159 CNHGTCMN--TPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINECEEMPE- 215
+ C C+C+ G+ + +E+ C C + +
Sbjct: 432 RDRSLCHGKGFLECGICRCDTGY-IGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDC 490
Query: 216 ICGSGTCENNIGSFSCRYINECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPA--EGPA 273
+CG C + Y CE C + G C G EG A
Sbjct: 491 VCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSA 550
Query: 274 CTDENECTMRTHNCDDNADCINNPVNKTGT 303
C + E T +C +
Sbjct: 551 C--QCERTTEGCLNPRRVECSGRGRCRCNV 578
Score = 32.8 bits (74), Expect = 0.74
Identities = 29/207 (14%), Positives = 42/207 (20%), Gaps = 15/207 (7%)
Query: 856 ISPSTDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICN 915
+S +D + D G G + +
Sbjct: 341 LSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQ 400
Query: 916 NGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNT---LGSNCT 972
+ V F C D + C G C +G NC
Sbjct: 401 EQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNC- 459
Query: 973 DINECESPQACLYGNCTNTLGSF-----------SCTCPPNYQLTPAGNACVVLEDINEC 1021
+ L G+C S C C + D C
Sbjct: 460 ECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINC 519
Query: 1022 EEHDNICENGHCTNTFGSFMCSCQDGF 1048
E ++ G C C GF
Sbjct: 520 ERYNGQVCGGPGRGLCFCGKCRCHPGF 546
Score = 32.0 bits (72), Expect = 1.2
Identities = 60/366 (16%), Positives = 90/366 (24%), Gaps = 67/366 (18%)
Query: 648 GGYGGGSRRVTCTKEIAGSTTRSTCCCSIGKAWGPQCEECPAVGSDEHKTL-------CP 700
G R C + + Q A+G + T+ C
Sbjct: 367 GVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECR 426
Query: 701 GGSGYRPNSATREGICPSPGKCQNVMGSF--ICTCP-PGYRLSPDKNSCQEDFAKLCPEG 757
R S G C+ G C C G + SC++D + G
Sbjct: 427 CRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSG 486
Query: 758 VGRGDKGEDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPN 817
+G G+ L + +P G CEC + G++C
Sbjct: 487 LGDCVCGQCLCHTSDVPGKLIYG--------QYCECDTINCERYNGQVC----------- 527
Query: 818 ICGNGTCTNLNGGFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDC 877
G G G +C C G+ G C +T+ R G C
Sbjct: 528 -GGPGRGLCFCG--KCRCHPGFE-GSACQC---------ERTTEGCLNPRRVECSGRGRC 574
Query: 878 ANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNIC-NNGTCVNAIGSFKCHCYAGFKL 936
C C +GY C EC P+ C +C G
Sbjct: 575 R----CNVCECHSGYQ----LPLC---QECPGCPSPCGKYISCAEC-----LKFEKGP-- 616
Query: 937 SHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECESPQACLYGNCTNTLGSFS 996
+C C + +P C C + + + S
Sbjct: 617 -FGKNCSAACPGLQLSNNP--VKGRTCKERDSEGCW---VAYTLEQQDGMDRYLIYVDES 670
Query: 997 CTCPPN 1002
C
Sbjct: 671 RECVAG 676
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 30.9 bits (70), Expect = 0.25
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 305 CVDIDECATSIQRCGEGFCVNDVGT-YHCVCPDGYMLLPSGKECI 348
D C C E +C + GT C C +GY LL G C
Sbjct: 2 KDDQLICVNENGGC-EQYCSDHTGTKRSCRCHEGYSLLADGVSCT 45
Score = 29.0 bits (65), Expect = 1.1
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 722 CQNVMGS-FICTCPPGYRLSPDKNSCQE 748
C + G+ C C GY L D SC
Sbjct: 19 CSDHTGTKRSCRCHEGYSLLADGVSCTP 46
Score = 27.5 bits (61), Expect = 3.9
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 147 EEIDECNLMPNMCNHGTCMNTPGS-FHCQCNRGFLYDSDTHQCIDINEC 194
++ C C C + G+ C+C+ G+ +D C E
Sbjct: 3 DDQLICVNENGGCEQ-YCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 50
Score = 27.5 bits (61), Expect = 4.8
Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 765 EDLNECALMPSACQGGECINT-DGSYRCECPAGYVKDETGKICIDDNEC 812
+D C C+ C + C C GY G C E
Sbjct: 3 DDQLICVNENGGCEQ-YCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 50
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 34.0 bits (77), Expect = 0.32
Identities = 17/137 (12%), Positives = 34/137 (24%), Gaps = 17/137 (12%)
Query: 882 GSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNND 941
G TC +G + +D + + N+ + F + ++
Sbjct: 709 GHRSITCIHGVWTQLPQCVAIDKLKKCKSSNLIILEEHLKNKKEFDHNSNIRYRCRGKEG 768
Query: 942 CIGNCTDINECESPQACLYGNCTNTLGSNCTDINECESPQACLYGNCTNTLGSFS----- 996
I C+ G + + I C P + T ++
Sbjct: 769 WIHTV-----------CINGRWDPEVNCSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEKV 817
Query: 997 -CTCPPNYQLTPAGNAC 1012
C NY +
Sbjct: 818 SVLCQENYLIQEGEEIT 834
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 33.7 bits (76), Expect = 0.34
Identities = 29/216 (13%), Positives = 48/216 (22%), Gaps = 11/216 (5%)
Query: 179 FLYDSDTHQCIDINECEEMPEICGSGTYINECEEMPEICGSGTCENNIGSFSCRYINECE 238
L T I + E I + EC ++ G + +++ C
Sbjct: 124 ELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCW 183
Query: 239 EMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNA---DCIN 295
+ +S D +C + D C
Sbjct: 184 THSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPP 243
Query: 296 NPVNKTGTRCVDIDECATSIQRCGEG------FCVNDVGTYHCVCPDGYMLLPSGKECID 349
+ RCV+ C +C V CP GY + S C
Sbjct: 244 PYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTP 303
Query: 350 MRR--ELCYLNYTDGLCSLPMSNEQTRMVCCCSMGQ 383
+++ Q C G
Sbjct: 304 CLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGS 339
Score = 31.7 bits (71), Expect = 1.4
Identities = 29/218 (13%), Positives = 54/218 (24%), Gaps = 24/218 (11%)
Query: 98 WCVCDEGFRGDGYSCEDIDECTDNTNYCDYILLCGSKPGEFMNPMTNKTEEIDECNLMPN 157
V D + E+ + T G+F+ + C P
Sbjct: 138 DSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVC---PT 194
Query: 158 MCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINECEEMPEIC 217
+C C H +C D +C+ C + C E C
Sbjct: 195 ICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVA----------CRNFYLDGRCV---ETC 241
Query: 218 GSGTCENNIGSFSCRYINECEEMPEICGSGTCENNIGSF----SC--RCEDGYSVKPAEG 271
+ C + C+++ C + + C C GY++ +
Sbjct: 242 PPPYYHFQ--DWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNL 299
Query: 272 PACTDENECTMRTHNCDDNADCINNPVNKTGTRCVDID 309
C H + + + C I+
Sbjct: 300 LCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVIN 337
Score = 30.6 bits (68), Expect = 3.2
Identities = 23/166 (13%), Positives = 38/166 (22%), Gaps = 17/166 (10%)
Query: 869 PGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKC 928
P IC + C C + D +C N +G CV
Sbjct: 193 PTICKSHGCTAEGLCCHSECLGNCS------QPDDPTKCVACRNFYLDGRCVE------- 239
Query: 929 HCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECESPQACLYGNC 988
C + + C + + C+ + N+C Y
Sbjct: 240 TCPPPYYHFQDW----RCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMN 295
Query: 989 TNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCT 1034
++ L C P + + E NG
Sbjct: 296 SSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLI 341
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond,
EGF- like domain, glycoprotein, polymorphism, structural
genomics, PSI-2; NMR {Homo sapiens}
Length = 71
Score = 30.4 bits (68), Expect = 0.48
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 766 DLNECALMPSACQGG-ECINTDGSYRC 791
D+NEC +P AC+G +CIN G Y C
Sbjct: 2 DVNECLTIPEACKGEMKCINHYGGYLC 28
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 29.3 bits (66), Expect = 0.74
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 727 GSFICTCPPGYRLSPDKNSCQE 748
+C+C GYRL+ ++ SC+
Sbjct: 19 NKVVCSCTEGYRLAENQKSCEP 40
Score = 27.8 bits (62), Expect = 2.8
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 5/39 (12%)
Query: 874 NGDCANF-----QGSFQCTCANGYTLNTARDSCVDIDEC 907
NG C F C+C GY L + SC
Sbjct: 6 NGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 44
Score = 26.3 bits (58), Expect = 9.4
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 322 FCVNDVGT-YHCVCPDGYMLLPSGKECI 348
FC N C C +GY L + K C
Sbjct: 12 FCKNSADNKVVCSCTEGYRLAENQKSCE 39
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 32.5 bits (74), Expect = 0.82
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 5/102 (4%)
Query: 911 PNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSN 970
+ + + S C++ F H+ D +G DI +S +AC CTN +
Sbjct: 272 SKALSGFSLQSCRHSIPVFCHSSF--YHDTDFLGEELDIVAAKSHEAC-QKLCTNAV--R 326
Query: 971 CTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNAC 1012
C + +C G L S P G +
Sbjct: 327 CQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISG 368
>2kcd_A Uncharacterized protein SSP0047; alpha beta, structural genomics,
unknown function, PSI-2, protein structure initiative;
NMR {Staphylococcus saprophyticus subsp}
Length = 120
Score = 30.4 bits (68), Expect = 0.92
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 21/94 (22%)
Query: 106 RGDGYSCEDIDECTDNTNYCDYILLCGSKPGEFMN--PMTNKT--------EEIDECNLM 155
R + + CE I+E D+ IL P +++ P++NK + + + N+
Sbjct: 19 RDEKWECESIEEVADD------IL-----PDQYVRLGPLSNKILQTNTYYSDTLHKSNIY 67
Query: 156 PNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCI 189
P + + + G + FLY +T +
Sbjct: 68 PFILYYQKQLIAIGFIDENHDMDFLYLHNTVMPL 101
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 28.9 bits (65), Expect = 0.96
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 722 CQNVMGS-FICTCPPGYRLSPDKNSCQE 748
C + G+ C C GY L D SC
Sbjct: 13 CSDHTGTKRSCRCHEGYSLLADGVSCTP 40
Score = 27.0 bits (60), Expect = 4.7
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 320 EGFCVNDVGT-YHCVCPDGYMLLPSGKECI 348
E +C + GT C C +GY LL G C
Sbjct: 10 EQYCSDHTGTKRSCRCHEGYSLLADGVSCT 39
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 30.9 bits (70), Expect = 1.2
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 160 NHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEE 196
G C+ T G++ C C GF +C + + ++
Sbjct: 129 KQGECLETIGNYTCSCYPGFYGP----ECEYVRDDDD 161
Score = 28.2 bits (63), Expect = 8.7
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 708 NSATREGICPSPGKCQNVMGSFICTCPPGYR 738
++ ++ C G+C +G++ C+C PG+
Sbjct: 119 TASCQDMSCSKQGECLETIGNYTCSCYPGFY 149
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 32.2 bits (72), Expect = 1.3
Identities = 31/169 (18%), Positives = 48/169 (28%), Gaps = 24/169 (14%)
Query: 190 DINECEEMPEICGSGTYINECEEMPEICGSGTCENNIGSFSCRYINECEEM-PEICGSGT 248
+ ++ EE +IC + C + N C + C+++ P IC S
Sbjct: 148 NKDDNEECGDICPG------TAKGKTNCPATVI-NGQFVERCWTHSHCQKVCPTICKSHG 200
Query: 249 CENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNA---DCINNPVNKTGTRC 305
C C S D +C + D C + RC
Sbjct: 201 CTAEGLCCHSECLGNCS-------QPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRC 253
Query: 306 VDIDECATSIQRCGEGFCVNDVGTY----HCV--CPDGYMLLPSGKECI 348
V+ C +C C+ CP GY + S C
Sbjct: 254 VNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCT 302
Score = 31.8 bits (71), Expect = 1.3
Identities = 33/199 (16%), Positives = 55/199 (27%), Gaps = 25/199 (12%)
Query: 699 CPGGSGYRPNSATREGICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGV 758
CPG + + N +C CP + + C + E +
Sbjct: 159 CPGTAKGKTNCPATVINGQFVERCWT-HSHCQKVCPTICK----SHGCTAEGLCCHSECL 213
Query: 759 GRGDKGEDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNI 818
G + +D +C + G C+ T CP Y + C++ + C + +
Sbjct: 214 GNCSQPDDPTKCVACRNFYLDGRCVET-------CPPPYYHFQ-DWRCVNFSFCQDLHHK 265
Query: 819 CGNGTCTNLNG----GFECT--CSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGIC 872
C N + +C C GY C+ G
Sbjct: 266 CKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCT------PCLGPCPKVCHLLEGEK 319
Query: 873 ANGDCANFQGSFQCTCANG 891
+ Q CT NG
Sbjct: 320 TIDSVTSAQELRGCTVING 338
Score = 31.8 bits (71), Expect = 1.6
Identities = 24/190 (12%), Positives = 40/190 (21%), Gaps = 13/190 (6%)
Query: 863 DECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICN---NGTC 919
D C N G F C + C C+ G C
Sbjct: 157 DICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNC 216
Query: 920 VNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECES 979
C A + C+ C P ++C++
Sbjct: 217 SQPDDPT--KCVACRNFYLDGRCV------ETCPPPYYHFQDWRCVNFSFCQDLHHKCKN 268
Query: 980 PQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACV--VLEDINECEEHDNICENGHCTNTF 1037
+ CP Y + + C + C + T+
Sbjct: 269 SRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQ 328
Query: 1038 GSFMCSCQDG 1047
C+ +G
Sbjct: 329 ELRGCTVING 338
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 31.2 bits (71), Expect = 1.4
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 874 NGDCANF----QGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTC 919
C +F Q S+ C+CA GY L CV D+CA
Sbjct: 10 TDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAP 59
Score = 30.1 bits (68), Expect = 3.3
Identities = 11/40 (27%), Positives = 13/40 (32%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRG 761
C S+ C+C GYRL D C C
Sbjct: 17 CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEK 56
Score = 29.3 bits (66), Expect = 5.7
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 309 DECAT-SIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKEC 347
+EC C + FC+ +Y C C GY L K+C
Sbjct: 3 NECHPERTDGC-QHFCLPGQESYTCSCAQGYRLGEDHKQC 41
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
Length = 501
Score = 31.4 bits (70), Expect = 1.9
Identities = 24/186 (12%), Positives = 39/186 (20%), Gaps = 17/186 (9%)
Query: 861 DIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCV 920
+ C + C NG C C + C+N
Sbjct: 159 HLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQ----CSGRCRGKSPSDCCHNQCAA 214
Query: 921 NAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECESP 980
G + C K C C + + N T + +C
Sbjct: 215 GCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRN 274
Query: 981 QACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSF 1040
GS C + + +C++ + C G F
Sbjct: 275 YVVTDH------GSCVRACGADSYEMEEDG-------VRKCKKCEGPCRKVCNGIGIGEF 321
Query: 1041 MCSCQD 1046
S
Sbjct: 322 KDSLSI 327
Score = 30.7 bits (68), Expect = 3.0
Identities = 27/163 (16%), Positives = 43/163 (26%), Gaps = 17/163 (10%)
Query: 888 CANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCT 947
++ + N + D + C + C NG+C A K+ C G C
Sbjct: 144 VSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLT---KIICAQQCSGRCR 200
Query: 948 DINECESPQACLYGNCTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTP 1007
+ + CT S+C + C TCPP P
Sbjct: 201 GKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCK------------DTCPPLMLYNP 248
Query: 1008 AGNACVVLEDINECEEHD--NICENGHCTNTFGSFMCSCQDGF 1048
V + C + GS + +C
Sbjct: 249 TTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADS 291
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 30.7 bits (69), Expect = 2.3
Identities = 6/46 (13%), Positives = 11/46 (23%)
Query: 702 GSGYRPNSATREGICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQ 747
G+ G + +C GY++ D
Sbjct: 279 GNECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMD 324
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 31.0 bits (69), Expect = 2.6
Identities = 25/228 (10%), Positives = 52/228 (22%), Gaps = 20/228 (8%)
Query: 101 CDEGFRGDGYSCEDIDECTDNTNYCDYILLCGSKPGEFMNPMTNKTEEIDECNLMPNMCN 160
+ ++ + T + + E+ C P+ C
Sbjct: 134 VSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMC---PSTCG 190
Query: 161 HGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYINECEEMPEICGSG 220
C H +C + C+ C Y C C
Sbjct: 191 KRACTENNECCHPECLGSCSAPDNDTACV----------ACRHYYYAGVCVP---ACPPN 237
Query: 221 TCENNIGSFSCRYINECEEMPEICGSGTCENNIGSFSC--RCEDGYSVKPAEGPACTDEN 278
T + C + C + S + I C C G+ ++ C
Sbjct: 238 TYRFE--GWRCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCE 295
Query: 279 ECTMRTHNCDDNADCINNPVNKTGTRCVDIDECATSIQRCGEGFCVND 326
+ + I++ + + I + I ++
Sbjct: 296 GPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLLINIRRGNNIASE 343
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 30.5 bits (69), Expect = 3.3
Identities = 26/134 (19%), Positives = 37/134 (27%), Gaps = 22/134 (16%)
Query: 255 SFSCRCEDGYSVKPAEGPACTDENEC-----------TMRTHNCDDNADCINNPVNKTGT 303
SFS CE GY + P + C +C D + V T
Sbjct: 40 SFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSIVDCGPPDDLPSGRVEYI-T 98
Query: 304 RCVDIDECATSIQRCGEGFCVNDVGTYHCVCP-DGYMLLPSGKECIDMRRELCYLNYTDG 362
A C E F V VC DG+ G++ L +
Sbjct: 99 GPGVTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKGEKS---------LPVCEP 149
Query: 363 LCSLPMSNEQTRMV 376
+C L ++
Sbjct: 150 VCGLSARTTGGQIY 163
Score = 30.5 bits (69), Expect = 3.5
Identities = 25/152 (16%), Positives = 34/152 (22%), Gaps = 42/152 (27%)
Query: 859 STDIDECYERPGICANGDCAN------FQGSFQCTCANGYTLNTARDSCVDIDECARHPN 912
++ C P NG + + SF C GY L
Sbjct: 11 TSTAHAC-PYPMAPPNGHVSPVQAKYILKDSFSIFCETGYELLQGHLP------------ 57
Query: 913 ICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCT 972
+ SF C + C I +C P G G T
Sbjct: 58 ----------LKSFTAVCQKDGSWDR---PMPAC-SIVDCGPPDDLPSGRVEYITGPGVT 103
Query: 973 D-----INECESPQACLYGNCTNTLGSFSCTC 999
CE + N G + C
Sbjct: 104 TYKAVIQYSCEETFYTMKVND----GKYVCEA 131
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 30.4 bits (68), Expect = 3.8
Identities = 14/69 (20%), Positives = 18/69 (26%), Gaps = 5/69 (7%)
Query: 219 SGTCENNIGSFSCRYINECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDEN 278
+ C I C+E G C FSC C GP C D
Sbjct: 170 ALFCNGQIERGCEGPSTTCQEDS-CSNQGVCLQQWDGFSCDCSMT----SFSGPLCNDPG 224
Query: 279 ECTMRTHNC 287
+ +
Sbjct: 225 TTYIFSKGG 233
Score = 29.6 bits (66), Expect = 5.3
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 4/86 (4%)
Query: 744 NSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQ-GGECINTDGSYRCECPAGYVKDET 802
N D G+ ++G + +C G C+ + C+C +
Sbjct: 160 NGRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSF---S 216
Query: 803 GKICIDDNECLSIPNICGNGTCTNLN 828
G +C D G T
Sbjct: 217 GPLCNDPGTTYIFSKGGGQITYKWPP 242
Score = 29.6 bits (66), Expect = 6.6
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 156 PNMC-NHGTCMNTPGSFHCQC 175
+ C N G C+ F C C
Sbjct: 190 EDSCSNQGVCLQQWDGFSCDC 210
Score = 29.6 bits (66), Expect = 6.9
Identities = 7/26 (26%), Positives = 8/26 (30%), Gaps = 1/26 (3%)
Query: 905 DECARHPNICNNGTCVNAIGSFKCHC 930
C N G C+ F C C
Sbjct: 186 TTCQEDS-CSNQGVCLQQWDGFSCDC 210
Score = 29.2 bits (65), Expect = 8.0
Identities = 12/39 (30%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 806 CIDDNECLSIPNICGN-GTCTNLNGGFECTCSEGYAPGP 843
C C N G C GF C CS GP
Sbjct: 182 EGPSTTCQEDS--CSNQGVCLQQWDGFSCDCSMTSFSGP 218
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 28.5 bits (63), Expect = 3.9
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
Query: 783 INTDGSYRCECPAGYVKDETGKICIDDNECLSIPNIC-GNGTCTNLNGG-FECTCSEGY 839
DG+ C + +D + + C C C + C C++
Sbjct: 20 RYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKMNDKNEIVCKCTKEG 78
Score = 27.3 bits (60), Expect = 8.1
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 254 GSFSCRCEDGYSVKPAEGPACTDENECTMRTHN--CDDNADCINNPVNKTGTRCVD 307
G+ RC + + C T + N C A+C N N+ +C
Sbjct: 24 GTEEWRCLLYFKE---DAGKCVPAPNMTCKDKNGGCAPEAECKMNDKNEIVCKCTK 76
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 29.3 bits (66), Expect = 4.2
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 774 PSACQGGECINTDGSYRCECPAGYVKDE 801
S GEC+ T +Y C+C G+ +
Sbjct: 125 TSCSGHGECVETINNYTCKCDPGFSGLK 152
Score = 28.2 bits (63), Expect = 9.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 160 NHGTCMNTPGSFHCQCNRGF 179
HG C+ T ++ C+C+ GF
Sbjct: 129 GHGECVETINNYTCKCDPGF 148
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 28.5 bits (63), Expect = 4.5
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 254 GSFSCRCEDGYSVKPAEGPACTDEN-ECTMRTHNCDDNADCINNPVNKTGTRC 305
G+ RC G+ G C + C C A+C + + +C
Sbjct: 30 GTEEWRCLLGFK---EVGGKCVPASITCEENNGGCAPEAECTMDDKKEVECKC 79
Score = 28.1 bits (62), Expect = 5.7
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 783 INTDGSYRCECPAGYVKDETGKICIDDNECLSIPN-ICG-NGTCTNLNGG-FECTCSEGY 839
DG+ C G+ + G C+ + N C CT + EC C++
Sbjct: 26 RYLDGTEEWRCLLGFKEV--GGKCVPASITCEENNGGCAPEAECTMDDKKEVECKCTKEG 83
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 30.0 bits (66), Expect = 4.6
Identities = 53/391 (13%), Positives = 86/391 (21%), Gaps = 33/391 (8%)
Query: 674 CSIGKAWGPQCEECPAVGSDEHKTLCPGGSGYRPNSATREGICPSPG---------KCQN 724
C G WG E C + C G + S C + C+
Sbjct: 170 CPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRK 229
Query: 725 VMGSFIC--TCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGGEC 782
C TCPP +P PEG + A C
Sbjct: 230 FRDEATCKDTCPPLMLYNPTTYQMDV-----NPEG--------KYSFGATCVKKCPRNYV 276
Query: 783 INTDGSYRCECPAGYVKDETGKI---------CIDDNECLSIPNICGNGTCTNLNGGFEC 833
+ GS C A + E + C + I + + N
Sbjct: 277 VTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFK 336
Query: 834 TCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCANGYT 893
C+ + A +P D E + Q +
Sbjct: 337 NCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAF 396
Query: 894 LNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECE 953
N + + + S K +S N + T +
Sbjct: 397 ENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKL 456
Query: 954 SPQACLYGNCTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACV 1013
+ + G N C C +C + + C
Sbjct: 457 FGTSGQKTKIISNRGENKCKATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCK 516
Query: 1014 VLEDINECEEHDNICENGHCTNTFGSFMCSC 1044
+LE ++ C H + +C
Sbjct: 517 LLEGEPREFVENSECIQCHPECLPQAMNITC 547
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 30.1 bits (67), Expect = 5.1
Identities = 36/272 (13%), Positives = 74/272 (27%), Gaps = 36/272 (13%)
Query: 353 ELCYLNYTDGLCSLPMSNEQTRMVCCCSMGQSWGKPCQPCPPPGSRDYILLCGKD--FAK 410
E+C L + T G + G G R+Y + F
Sbjct: 339 EICNLTPDALKSRTLRNWNTTFYEGTWRRGSTAG---------GCRNYPATFWVNPQFKI 389
Query: 411 LCPEGVGRGDKGEDLNECRTVITVRDSYFTEQWRDAKKNQRLGF----CYRSLTNGRCVL 466
E D + C ++ + + + R + + +GF R L L
Sbjct: 390 RLEEVDDADDYDSRESGCSFLLALMQKHRRRERRFGRDMETIGFAVYQVPRELAGQPVHL 449
Query: 467 PTGPALLME--------VTRMDCCCTMGMAWGPQCQLCPTRGSQTCEDINECLELSNQCA 518
L + + + + G + T + ++ + L ++
Sbjct: 450 KRDFFLANASRAQSEHFINLREVSNRIRLPPGEYIVVPST--FEPNKEGDFLLRFFSEKK 507
Query: 519 FRCHNISMSVSNSLACALTPVLTRKISMSVSNSLACA----------LTPVLTRKVATPV 568
+ + +L + A L +L R ++
Sbjct: 508 AGTQELDDQIQANLPDEKVLSEEEIDDNFKTLFSKLAGDDMEISVKELQTILNRIISKHK 567
Query: 569 AVINDCIDLDECRMMSYLC-RNGRCRNNIGSF 599
+ + L+ CR M L R+G + + F
Sbjct: 568 DLRTNGFSLESCRSMVNLMDRDGNGKLGLVEF 599
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 29.0 bits (65), Expect = 5.1
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 908 ARHPNIC-NNGTCVNAIGSFKCHCYAGF 934
+ P C +G CV I ++ C+C G+
Sbjct: 121 SCQPWSCSGHGECVEIINNYTCNCDVGY 148
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase; HET: GLU ATP; 1.80A {Thermus
thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A*
1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A*
1g59_A 1gln_A
Length = 468
Score = 29.8 bits (68), Expect = 5.2
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 631 RCYLDTEEEEEEEEEEEGGYGGGSRRVT 658
R + +T EE E+ +E+GGY G +R +
Sbjct: 104 RAF-ETPEELEQIRKEKGGYDGRARNIP 130
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 29.6 bits (65), Expect = 6.3
Identities = 21/225 (9%), Positives = 48/225 (21%), Gaps = 2/225 (0%)
Query: 789 YRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGGFECTCSEGYAPGPLGSCA 848
+ G + + N I NG L G
Sbjct: 307 PKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLN 366
Query: 849 ILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECA 908
+ T+ I+ +I P + +N +G +L + + +
Sbjct: 367 VFRTVREITGFLNIQSWP--PNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQ 424
Query: 909 RHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLG 968
I + + + + + N C +
Sbjct: 425 SLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCS 484
Query: 969 SNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACV 1013
S+ + +C + ++ + CV
Sbjct: 485 SDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFENDSICV 529
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 29.6 bits (65), Expect = 6.7
Identities = 34/263 (12%), Positives = 59/263 (22%), Gaps = 25/263 (9%)
Query: 656 RVTCTKEIAGSTTRSTCCCSIGKAWGPQCEECPAVGSDEHKTLCPGGSGYRPNSATREGI 715
+C+ + +G +W P +C + + +
Sbjct: 439 AASCSVTDSCYAIELEYSVDLGLSWHPLVRDCLPTNVECSRYHLQRILVSDTFNKWTRIT 498
Query: 716 CPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLC-PEGVGRGDKGEDLNECALMP 774
P P ++ F P + C G G
Sbjct: 499 LPLPSYTRSQATRFRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHG------------- 545
Query: 775 SACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICGNGTCTNLNGGFECT 834
C G C+ + C T + T G
Sbjct: 546 -RCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAP------SNQNWLTVSGGKLSTV 598
Query: 835 CSEGYAPGPL---GSCAILLTLPPISPST-DIDECYERPGICANGDCANFQGSFQCTCAN 890
C + L G C+ LL ++ + + + Y G N + +
Sbjct: 599 CGAVASGLALHFSGGCSRLLVTVDLNLTNAEFIQFYFMYGCLITPSNRNQGVLLEYSVNG 658
Query: 891 GYTLNTARDSCVDIDECARHPNI 913
G T N + D NI
Sbjct: 659 GITWNLLMEIFYDQYSKPGFVNI 681
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor,
immunity, signaling transferase; HET: NAG NDG; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3p11_A*
Length = 621
Score = 29.6 bits (65), Expect = 6.8
Identities = 20/172 (11%), Positives = 33/172 (19%), Gaps = 7/172 (4%)
Query: 874 NGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAG 933
+ C T C C++ G C+A
Sbjct: 168 HEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFAC 227
Query: 934 FKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECESPQACLYGNCTNTLG 993
+ + C+ C L N + C +C
Sbjct: 228 RHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVR--- 284
Query: 994 SFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFMCSCQ 1045
CPP+ + C + +G T S
Sbjct: 285 ----ACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGF 332
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 27.8 bits (61), Expect = 7.3
Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 5/74 (6%)
Query: 235 NECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACT--DENECTMRTHNCDDNAD 292
++C + SG + C+C Y EG C C CD +A
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQ---EGDKCVENPNPTCNENNGGCDADAK 61
Query: 293 CINNPVNKTGTRCV 306
C G +
Sbjct: 62 CTEEDSGSNGKKIT 75
Score = 27.4 bits (60), Expect = 8.6
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 783 INTDGSYRCECPAGYVKDETGKICIDDNECLSIPNICG-NGTCTNLNGG-----FECTCS 836
+ D C+C Y ++ + + C C + CT + G C C+
Sbjct: 20 RHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECT 79
Query: 837 EGY 839
+
Sbjct: 80 KPD 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 29.3 bits (66), Expect = 7.5
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 604 LQGYTLASEGQYCRDVDECKEVNKRESRCYLDTEEEEEEEEEEE 647
L G + E ++ E R LD EE +EEEE+
Sbjct: 310 LNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEED 353
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune
system; NMR {Mus musculus}
Length = 551
Score = 29.2 bits (65), Expect = 9.6
Identities = 33/183 (18%), Positives = 55/183 (30%), Gaps = 30/183 (16%)
Query: 230 SCRYINECEEMPEICGSGTCENNIGSFSC------RCEDGYSVKPAEGPACTDENECTMR 283
C +N+C P + + N FS RC G+ +K A C N+
Sbjct: 191 QCIELNKCTPPPYVENAVMLSENRSLFSLRDIVEFRCHPGFIMKGASSVHCQSLNKWEPE 250
Query: 284 THNCDDNADCINNPVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPS 343
+C C + + + + + T C DGY L S
Sbjct: 251 LPSCFKGVICRLPQEMSGFQKGL----------GMKKEYYYGENVTLE--CEDGYTLEGS 298
Query: 344 GK-ECIDMRRELCYLNYTDGLCSLPMSNEQTRMVCCCSMGQSWGKPCQPCPPPGSRDYIL 402
+ +C +DG + ++ +R+ KPC P S +I
Sbjct: 299 SQSQCQ-----------SDGSWNPLLAKCVSRLADPEVPRDCGCKPCICTVPEVSSVFIF 347
Query: 403 LCG 405
Sbjct: 348 PPK 350
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating,
carbohydrate binding protein; 1.60A {Myxococcus xanthus}
PDB: 4fbv_A*
Length = 267
Score = 28.5 bits (63), Expect = 9.6
Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 7/93 (7%)
Query: 247 GTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADCINNPVNKTGTRCV 306
G +++ G+ + +G + EN+ + GTR
Sbjct: 111 GKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWV------LGTRG- 163
Query: 307 DIDECATSIQRCGEGFCVNDVGTYHCVCPDGYM 339
+ + G ++ TY+ P G+
Sbjct: 164 KQNVINVDAKSNDGGKTLSGTMTYNGEGPIGFR 196
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.462
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,348,306
Number of extensions: 1036683
Number of successful extensions: 6817
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4191
Number of HSP's successfully gapped: 1329
Length of query: 1050
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 947
Effective length of database: 3,825,930
Effective search space: 3623155710
Effective search space used: 3623155710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.1 bits)