BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18239
(97 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 10 RKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57
++ SQ ++ + ++ E E LC R+A++ NG + G+V+ LK ++
Sbjct: 190 KQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 237
>pdb|3LO3|A Chain A, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|B Chain B, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|C Chain C, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|D Chain D, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|E Chain E, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|F Chain F, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|G Chain G, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|H Chain H, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|I Chain I, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|J Chain J, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|K Chain K, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|L Chain L, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|M Chain M, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|N Chain N, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|O Chain O, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|P Chain P, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|Q Chain Q, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|R Chain R, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|S Chain S, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|T Chain T, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|U Chain U, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|V Chain V, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|W Chain W, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|X Chain X, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|Y Chain Y, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|Z Chain Z, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|AA Chain a, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h.
pdb|3LO3|BB Chain b, The Crystal Structure Of A Conserved Functionally
Unknown Protein From Colwellia Psychrerythraea 34h
Length = 94
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 12 NSQTWISFGLFYSSLEECEALCTRLAVMV---NGRLSCLGSVQHLKNKFAVGYQLQIKFP 68
N+ +I GL E+ + R+A + +G + GSV+ L KF Q+ ++F
Sbjct: 2 NATAYIIVGLTPKDAEKLQQYGARVASTLAKYSGEVLVKGSVEQLHGKFEHKAQVILEF- 60
Query: 69 PTTQQNIKWFVAAYLKG--NTRRLG 91
P+ + W+ + + +TR LG
Sbjct: 61 PSREDAYNWYHSEEYQALISTRDLG 85
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 67 FPPTTQQNIKWFVAAYLKG 85
FP TQQ +K F A Y KG
Sbjct: 210 FPNLTQQQLKNFAAEYTKG 228
>pdb|3D0C|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Oceanobacillus Iheyensis At 1.9 A Resolution
pdb|3D0C|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Oceanobacillus Iheyensis At 1.9 A Resolution
Length = 314
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 20 GLFYS-SLEECEALCTRLAVMVNGRLSCLGSV 50
G FY+ ++EE + + TR+ +VNGR + + +
Sbjct: 57 GEFYALTIEEAKQVATRVTELVNGRATVVAGI 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,792,196
Number of Sequences: 62578
Number of extensions: 87903
Number of successful extensions: 195
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 4
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)