Query psy18239
Match_columns 97
No_of_seqs 156 out of 1230
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 17:14:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0059|consensus 99.1 3.1E-10 6.7E-15 87.2 8.4 84 6-89 738-822 (885)
2 COG0444 DppD ABC-type dipeptid 99.0 5.9E-10 1.3E-14 76.6 6.1 58 5-62 192-250 (316)
3 COG1125 OpuBA ABC-type proline 99.0 4.9E-10 1.1E-14 75.4 5.0 53 9-61 178-231 (309)
4 TIGR01257 rim_protein retinal- 99.0 5.1E-09 1.1E-13 85.9 11.0 84 6-89 2110-2199(2272)
5 COG4175 ProV ABC-type proline/ 99.0 9.6E-10 2.1E-14 75.9 4.9 49 14-62 213-261 (386)
6 COG1126 GlnQ ABC-type polar am 99.0 1.8E-09 3.9E-14 71.0 5.6 51 8-58 178-228 (240)
7 PRK13537 nodulation ABC transp 98.9 8.5E-09 1.8E-13 70.9 8.6 52 6-57 178-229 (306)
8 COG1123 ATPase components of v 98.9 3.3E-09 7.1E-14 77.4 6.5 61 5-65 193-254 (539)
9 TIGR01257 rim_protein retinal- 98.9 2E-08 4.3E-13 82.6 11.1 84 5-89 1100-1222(2272)
10 COG1120 FepC ABC-type cobalami 98.9 4.1E-09 8.8E-14 71.0 5.6 51 5-55 177-228 (258)
11 COG1135 AbcC ABC-type metal io 98.9 3E-09 6.6E-14 73.1 5.0 53 5-57 180-233 (339)
12 COG4586 ABC-type uncharacteriz 98.9 9.2E-09 2E-13 69.9 6.7 60 9-68 199-259 (325)
13 PRK13536 nodulation factor exp 98.9 2.1E-08 4.5E-13 70.0 8.5 53 6-58 212-264 (340)
14 COG1131 CcmA ABC-type multidru 98.8 2.4E-08 5.1E-13 68.5 8.1 57 4-60 174-231 (293)
15 COG1118 CysA ABC-type sulfate/ 98.8 1.3E-08 2.9E-13 69.9 6.2 59 9-67 180-239 (345)
16 COG4555 NatA ABC-type Na+ tran 98.8 1.7E-08 3.8E-13 66.0 6.1 49 9-57 176-224 (245)
17 PRK15093 antimicrobial peptide 98.8 1.7E-08 3.8E-13 70.1 6.4 51 6-56 198-249 (330)
18 COG1122 CbiO ABC-type cobalt t 98.8 2E-08 4.4E-13 66.9 6.4 54 4-57 176-230 (235)
19 PRK09473 oppD oligopeptide tra 98.8 1.7E-08 3.7E-13 70.1 6.3 52 7-58 202-254 (330)
20 COG1134 TagH ABC-type polysacc 98.8 2.6E-08 5.5E-13 66.5 6.6 50 9-58 190-239 (249)
21 COG1124 DppF ABC-type dipeptid 98.8 1.5E-08 3.2E-13 67.6 4.9 51 6-56 181-232 (252)
22 TIGR01188 drrA daunorubicin re 98.8 4.7E-08 1E-12 67.0 7.6 52 7-58 165-216 (302)
23 COG1123 ATPase components of v 98.8 1.9E-08 4.2E-13 73.5 5.7 57 5-61 468-525 (539)
24 PRK11022 dppD dipeptide transp 98.8 3.1E-08 6.7E-13 68.8 6.5 53 6-58 193-246 (326)
25 COG1127 Ttg2A ABC-type transpo 98.7 2.8E-08 6.1E-13 66.3 5.9 47 10-56 189-236 (263)
26 COG4152 ABC-type uncharacteriz 98.7 2.2E-08 4.7E-13 67.3 5.2 52 9-60 173-224 (300)
27 PRK15079 oligopeptide ABC tran 98.7 3.2E-08 7E-13 68.8 6.2 52 6-57 201-253 (331)
28 TIGR01288 nodI ATP-binding ABC 98.7 1E-07 2.3E-12 65.4 8.6 52 7-58 176-227 (303)
29 TIGR02314 ABC_MetN D-methionin 98.7 3.1E-08 6.6E-13 69.3 6.0 50 6-55 180-230 (343)
30 TIGR03258 PhnT 2-aminoethylpho 98.7 3.6E-08 7.8E-13 69.4 6.4 49 9-57 180-230 (362)
31 PRK11308 dppF dipeptide transp 98.7 3.3E-08 7.2E-13 68.7 6.1 52 6-57 194-246 (327)
32 COG0411 LivG ABC-type branched 98.7 1.7E-08 3.6E-13 67.3 4.2 51 7-57 190-241 (250)
33 PRK13643 cbiO cobalt transport 98.7 5.2E-08 1.1E-12 66.5 6.7 48 8-55 186-233 (288)
34 PRK10851 sulfate/thiosulfate t 98.7 4.5E-08 9.7E-13 68.7 6.4 51 7-57 177-228 (353)
35 TIGR03265 PhnT2 putative 2-ami 98.7 4.3E-08 9.4E-13 68.7 6.3 50 8-57 176-226 (353)
36 PRK11650 ugpC glycerol-3-phosp 98.7 4.7E-08 1E-12 68.6 6.3 50 8-57 176-226 (356)
37 PRK11432 fbpC ferric transport 98.7 5.6E-08 1.2E-12 68.2 6.3 50 9-58 179-229 (351)
38 TIGR01186 proV glycine betaine 98.7 4.9E-08 1.1E-12 68.8 5.9 49 9-57 172-221 (363)
39 PRK13651 cobalt transporter AT 98.7 6.5E-08 1.4E-12 66.6 6.3 49 8-56 207-255 (305)
40 COG3842 PotA ABC-type spermidi 98.7 3.7E-08 8E-13 69.0 5.0 47 13-59 184-230 (352)
41 PRK09536 btuD corrinoid ABC tr 98.7 8.1E-08 1.8E-12 68.5 6.5 48 6-53 179-226 (402)
42 PRK09452 potA putrescine/sperm 98.7 7.8E-08 1.7E-12 68.0 6.4 51 8-58 186-237 (375)
43 TIGR03415 ABC_choXWV_ATP choli 98.7 7.3E-08 1.6E-12 68.3 6.1 48 9-56 207-255 (382)
44 COG4172 ABC-type uncharacteriz 98.6 6.3E-08 1.4E-12 69.0 5.3 56 6-61 466-522 (534)
45 TIGR01187 potA spermidine/putr 98.6 1E-07 2.3E-12 66.1 6.3 49 8-56 142-191 (325)
46 TIGR03522 GldA_ABC_ATP gliding 98.6 3.4E-07 7.3E-12 62.9 8.7 58 8-67 175-232 (301)
47 PRK11614 livF leucine/isoleuci 98.6 1.1E-07 2.4E-12 62.9 6.0 48 8-55 179-226 (237)
48 PRK13631 cbiO cobalt transport 98.6 1.2E-07 2.7E-12 65.6 6.5 48 8-55 218-265 (320)
49 COG4172 ABC-type uncharacteriz 98.6 8.4E-08 1.8E-12 68.4 5.3 57 5-61 196-253 (534)
50 cd03219 ABC_Mj1267_LivG_branch 98.6 1.6E-07 3.4E-12 62.0 6.2 48 8-55 185-232 (236)
51 PRK13634 cbiO cobalt transport 98.6 1.5E-07 3.3E-12 64.2 6.3 49 7-55 186-235 (290)
52 PRK13637 cbiO cobalt transport 98.6 1.8E-07 3.9E-12 63.8 6.6 48 8-55 186-234 (287)
53 PRK11144 modC molybdate transp 98.6 1.3E-07 2.7E-12 66.3 5.9 51 8-58 170-221 (352)
54 PRK11607 potG putrescine trans 98.6 1.7E-07 3.6E-12 66.3 6.3 45 14-58 198-242 (377)
55 PRK11000 maltose/maltodextrin 98.6 1.7E-07 3.7E-12 66.1 6.2 49 8-56 175-224 (369)
56 PRK10619 histidine/lysine/argi 98.6 2.3E-07 5E-12 62.1 6.5 48 8-55 194-241 (257)
57 COG3840 ThiQ ABC-type thiamine 98.6 1.8E-07 3.8E-12 60.6 5.5 47 9-55 172-219 (231)
58 PRK13641 cbiO cobalt transport 98.6 2.5E-07 5.3E-12 63.1 6.6 47 9-55 188-234 (287)
59 PRK13647 cbiO cobalt transport 98.6 2.5E-07 5.3E-12 62.7 6.6 46 8-53 180-225 (274)
60 PRK13639 cbiO cobalt transport 98.6 2.6E-07 5.7E-12 62.6 6.5 49 7-55 178-226 (275)
61 cd03261 ABC_Org_Solvent_Resist 98.6 2.2E-07 4.9E-12 61.4 5.9 49 7-55 177-226 (235)
62 PRK11153 metN DL-methionine tr 98.5 2.7E-07 5.9E-12 64.5 6.6 51 6-56 180-231 (343)
63 PRK09493 glnQ glutamine ABC tr 98.5 3.1E-07 6.8E-12 60.8 6.5 48 8-55 178-225 (240)
64 PRK13636 cbiO cobalt transport 98.5 2.5E-07 5.4E-12 63.0 6.2 48 8-55 183-231 (283)
65 PRK10261 glutathione transport 98.5 2E-07 4.3E-12 69.5 6.2 51 6-56 503-554 (623)
66 PRK13646 cbiO cobalt transport 98.5 3.1E-07 6.6E-12 62.6 6.6 49 8-56 187-236 (286)
67 PRK11264 putative amino-acid A 98.5 3.1E-07 6.6E-12 61.2 6.4 48 8-55 186-233 (250)
68 COG4559 ABC-type hemin transpo 98.5 1.3E-07 2.8E-12 62.4 4.4 63 7-69 182-246 (259)
69 PRK13652 cbiO cobalt transport 98.5 3.1E-07 6.6E-12 62.3 6.3 48 8-55 179-227 (277)
70 PRK14268 phosphate ABC transpo 98.5 3.8E-07 8.1E-12 61.2 6.5 47 9-56 197-243 (258)
71 PRK03695 vitamin B12-transport 98.5 3.2E-07 6.9E-12 61.3 6.0 47 8-54 175-221 (248)
72 cd03224 ABC_TM1139_LivF_branch 98.5 3.8E-07 8.1E-12 59.7 6.2 47 8-54 174-220 (222)
73 TIGR02142 modC_ABC molybdenum 98.5 3.9E-07 8.5E-12 63.9 6.6 51 7-57 172-223 (354)
74 PRK13638 cbiO cobalt transport 98.5 4.2E-07 9.2E-12 61.4 6.5 49 7-55 177-225 (271)
75 cd03218 ABC_YhbG The ABC trans 98.5 4.1E-07 9E-12 59.9 6.3 47 8-54 175-221 (232)
76 COG1121 ZnuC ABC-type Mn/Zn tr 98.5 2.1E-07 4.6E-12 62.6 4.9 52 4-56 177-228 (254)
77 cd03256 ABC_PhnC_transporter A 98.5 4.5E-07 9.8E-12 60.0 6.4 48 7-54 185-233 (241)
78 cd03296 ABC_CysA_sulfate_impor 98.5 3.6E-07 7.8E-12 60.6 5.9 48 8-55 178-226 (239)
79 cd03258 ABC_MetN_methionine_tr 98.5 4.4E-07 9.5E-12 59.9 6.2 48 8-55 182-230 (233)
80 TIGR03873 F420-0_ABC_ATP propo 98.5 3.9E-07 8.4E-12 61.0 6.0 47 8-54 179-225 (256)
81 PRK10070 glycine betaine trans 98.5 3.6E-07 7.8E-12 65.1 6.1 49 8-56 206-255 (400)
82 PRK13649 cbiO cobalt transport 98.5 5E-07 1.1E-11 61.3 6.5 48 8-55 187-234 (280)
83 TIGR02770 nickel_nikD nickel i 98.5 5.1E-07 1.1E-11 59.6 6.3 48 8-55 167-215 (230)
84 PRK14245 phosphate ABC transpo 98.5 5.6E-07 1.2E-11 60.0 6.4 49 7-56 187-235 (250)
85 cd03294 ABC_Pro_Gly_Bertaine T 98.5 5.1E-07 1.1E-11 61.0 6.2 47 9-55 203-250 (269)
86 TIGR03005 ectoine_ehuA ectoine 98.5 5.3E-07 1.1E-11 60.2 6.1 48 8-55 188-236 (252)
87 PRK10895 lipopolysaccharide AB 98.5 5.9E-07 1.3E-11 59.6 6.3 48 8-55 179-226 (241)
88 PRK15134 microcin C ABC transp 98.5 3.9E-07 8.6E-12 66.7 5.9 49 7-55 466-515 (529)
89 COG4608 AppF ABC-type oligopep 98.5 2.4E-07 5.3E-12 62.6 4.4 57 5-61 148-205 (268)
90 cd03265 ABC_DrrA DrrA is the A 98.5 5.9E-07 1.3E-11 58.8 6.0 45 8-52 173-218 (220)
91 PRK11300 livG leucine/isoleuci 98.5 6.7E-07 1.4E-11 59.7 6.4 49 7-55 194-243 (255)
92 cd03260 ABC_PstB_phosphate_tra 98.5 3.9E-07 8.4E-12 59.9 5.1 45 7-52 182-226 (227)
93 TIGR01978 sufC FeS assembly AT 98.5 6.3E-07 1.4E-11 59.4 6.2 48 7-54 185-233 (243)
94 PRK14273 phosphate ABC transpo 98.5 7.7E-07 1.7E-11 59.5 6.6 48 8-56 192-239 (254)
95 PRK10771 thiQ thiamine transpo 98.5 8E-07 1.7E-11 58.7 6.6 48 8-55 171-219 (232)
96 PRK11231 fecE iron-dicitrate t 98.5 6E-07 1.3E-11 60.1 6.0 47 8-54 180-226 (255)
97 PRK13548 hmuV hemin importer A 98.5 7E-07 1.5E-11 60.0 6.3 48 8-55 182-230 (258)
98 PRK11831 putative ABC transpor 98.4 6.9E-07 1.5E-11 60.3 6.2 48 8-55 185-233 (269)
99 PRK14239 phosphate transporter 98.4 8.5E-07 1.8E-11 59.1 6.5 47 9-56 191-237 (252)
100 TIGR02315 ABC_phnC phosphonate 98.4 6E-07 1.3E-11 59.5 5.8 46 8-53 187-233 (243)
101 PRK10253 iron-enterobactin tra 98.4 7.3E-07 1.6E-11 60.1 6.2 48 7-54 184-232 (265)
102 TIGR03411 urea_trans_UrtD urea 98.4 8.6E-07 1.9E-11 58.8 6.4 47 7-54 184-230 (242)
103 PRK14250 phosphate ABC transpo 98.4 8E-07 1.7E-11 59.1 6.3 47 9-55 174-221 (241)
104 COG1117 PstB ABC-type phosphat 98.4 2.1E-07 4.5E-12 61.5 3.3 51 7-58 190-240 (253)
105 PRK14274 phosphate ABC transpo 98.4 9.2E-07 2E-11 59.3 6.5 47 9-56 198-244 (259)
106 PRK13645 cbiO cobalt transport 98.4 8.4E-07 1.8E-11 60.5 6.3 47 9-55 193-240 (289)
107 TIGR03410 urea_trans_UrtE urea 98.4 8.3E-07 1.8E-11 58.4 6.1 46 8-53 173-219 (230)
108 PRK13546 teichoic acids export 98.4 1.2E-06 2.6E-11 59.3 7.0 50 8-57 185-234 (264)
109 cd03295 ABC_OpuCA_Osmoprotecti 98.4 9.2E-07 2E-11 58.7 6.3 48 8-55 177-225 (242)
110 PRK14257 phosphate ABC transpo 98.4 1E-06 2.2E-11 61.4 6.7 49 9-58 268-316 (329)
111 PRK14267 phosphate ABC transpo 98.4 1.2E-06 2.6E-11 58.4 6.8 46 9-55 192-237 (253)
112 PRK14256 phosphate ABC transpo 98.4 9.8E-07 2.1E-11 58.9 6.3 48 8-56 190-237 (252)
113 TIGR02769 nickel_nikE nickel i 98.4 7.9E-07 1.7E-11 59.9 5.9 48 8-55 192-240 (265)
114 PRK11701 phnK phosphonate C-P 98.4 8.9E-07 1.9E-11 59.3 6.1 47 9-55 194-241 (258)
115 PRK14244 phosphate ABC transpo 98.4 1.1E-06 2.5E-11 58.6 6.5 47 9-56 192-238 (251)
116 COG3638 ABC-type phosphate/pho 98.4 4.5E-07 9.7E-12 60.5 4.4 51 5-55 186-237 (258)
117 PRK10261 glutathione transport 98.4 5E-07 1.1E-11 67.5 5.2 50 6-55 208-258 (623)
118 COG4604 CeuD ABC-type enteroch 98.4 3.2E-07 6.9E-12 60.1 3.6 51 5-55 174-225 (252)
119 COG3839 MalK ABC-type sugar tr 98.4 5.3E-07 1.1E-11 63.0 5.0 52 15-66 183-234 (338)
120 PRK14242 phosphate transporter 98.4 1E-06 2.3E-11 58.8 6.2 46 9-55 192-237 (253)
121 PRK15112 antimicrobial peptide 98.4 8.5E-07 1.9E-11 59.8 5.8 49 7-55 190-239 (267)
122 TIGR03740 galliderm_ABC gallid 98.4 7.9E-07 1.7E-11 58.3 5.5 46 7-52 165-210 (223)
123 PRK14248 phosphate ABC transpo 98.4 1.2E-06 2.7E-11 59.0 6.6 48 8-56 206-253 (268)
124 PRK13650 cbiO cobalt transport 98.4 1.1E-06 2.3E-11 59.8 6.2 49 7-56 181-230 (279)
125 PRK14258 phosphate ABC transpo 98.4 1.1E-06 2.3E-11 59.1 6.2 48 9-56 193-246 (261)
126 TIGR03771 anch_rpt_ABC anchore 98.4 1E-06 2.2E-11 58.0 5.9 47 8-55 155-201 (223)
127 PRK10418 nikD nickel transport 98.4 1.1E-06 2.5E-11 58.7 6.2 48 8-55 182-230 (254)
128 PRK14247 phosphate ABC transpo 98.4 1.3E-06 2.8E-11 58.2 6.4 46 9-55 189-234 (250)
129 PRK10575 iron-hydroxamate tran 98.4 1.2E-06 2.6E-11 59.0 6.2 48 7-54 188-236 (265)
130 TIGR00972 3a0107s01c2 phosphat 98.4 1.5E-06 3.3E-11 57.9 6.6 46 9-55 187-232 (247)
131 PRK13644 cbiO cobalt transport 98.4 1.3E-06 2.8E-11 59.2 6.4 47 8-55 178-224 (274)
132 PRK14272 phosphate ABC transpo 98.4 1.7E-06 3.6E-11 57.7 6.8 46 9-55 191-236 (252)
133 PRK14238 phosphate transporter 98.4 1.4E-06 3.1E-11 58.9 6.4 47 9-56 210-256 (271)
134 TIGR00968 3a0106s01 sulfate AB 98.4 1.4E-06 3.1E-11 57.7 6.3 49 7-55 171-220 (237)
135 PRK14270 phosphate ABC transpo 98.4 1.5E-06 3.3E-11 58.0 6.4 48 8-56 189-236 (251)
136 PRK13545 tagH teichoic acids e 98.4 1.7E-06 3.8E-11 63.6 7.1 50 8-57 185-234 (549)
137 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.4 1.9E-06 4.1E-11 57.0 6.7 47 8-56 181-227 (238)
138 PRK14269 phosphate ABC transpo 98.4 1.9E-06 4E-11 57.4 6.7 46 9-55 185-230 (246)
139 PRK13547 hmuV hemin importer A 98.4 1.2E-06 2.6E-11 59.5 5.8 47 8-54 196-243 (272)
140 PRK14240 phosphate transporter 98.4 1.8E-06 3.9E-11 57.6 6.6 47 9-56 189-235 (250)
141 TIGR03269 met_CoM_red_A2 methy 98.4 1.5E-06 3.3E-11 63.5 6.7 48 8-55 469-517 (520)
142 PRK13549 xylose transporter AT 98.4 7.2E-07 1.6E-11 65.0 5.0 47 7-53 446-492 (506)
143 TIGR02323 CP_lyasePhnK phospho 98.4 1.5E-06 3.2E-11 58.0 6.1 47 9-55 191-238 (253)
144 PRK14253 phosphate ABC transpo 98.4 1.9E-06 4.1E-11 57.4 6.6 47 8-55 187-233 (249)
145 PRK11124 artP arginine transpo 98.4 1.8E-06 4E-11 57.2 6.5 45 9-53 184-228 (242)
146 PRK15134 microcin C ABC transp 98.3 1.3E-06 2.9E-11 63.9 6.2 48 8-55 198-246 (529)
147 PRK09984 phosphonate/organopho 98.3 1.6E-06 3.5E-11 58.2 6.2 46 8-53 194-240 (262)
148 PRK14251 phosphate ABC transpo 98.3 2E-06 4.2E-11 57.4 6.5 40 16-55 196-235 (251)
149 PRK10744 pstB phosphate transp 98.3 2E-06 4.4E-11 57.7 6.6 47 8-55 198-244 (260)
150 PRK14262 phosphate ABC transpo 98.3 2.3E-06 4.9E-11 57.0 6.8 46 9-55 189-234 (250)
151 PRK15439 autoinducer 2 ABC tra 98.3 1.4E-06 3E-11 63.7 6.0 46 8-53 182-227 (510)
152 cd03299 ABC_ModC_like Archeal 98.3 2.3E-06 4.9E-11 56.7 6.5 47 9-55 172-219 (235)
153 COG4598 HisP ABC-type histidin 98.3 7E-07 1.5E-11 58.0 3.9 50 9-58 195-244 (256)
154 PRK14249 phosphate ABC transpo 98.3 2.4E-06 5.2E-11 57.0 6.6 42 15-56 195-236 (251)
155 PRK10938 putative molybdenum t 98.3 1.8E-06 3.8E-11 62.7 6.3 48 7-54 176-223 (490)
156 cd03300 ABC_PotA_N PotA is an 98.3 1.7E-06 3.8E-11 57.1 5.7 47 9-55 173-220 (232)
157 PRK14252 phosphate ABC transpo 98.3 2.5E-06 5.4E-11 57.4 6.6 46 9-55 204-249 (265)
158 PRK15439 autoinducer 2 ABC tra 98.3 1.1E-06 2.4E-11 64.1 5.1 47 7-53 444-490 (510)
159 PRK14235 phosphate transporter 98.3 2.8E-06 6E-11 57.3 6.7 46 9-55 206-251 (267)
160 PRK14236 phosphate transporter 98.3 2.2E-06 4.7E-11 58.0 6.1 47 8-55 210-256 (272)
161 cd03268 ABC_BcrA_bacitracin_re 98.3 1.6E-06 3.4E-11 56.3 5.2 41 8-48 168-208 (208)
162 PRK14237 phosphate transporter 98.3 2.8E-06 6.1E-11 57.3 6.6 46 9-55 206-251 (267)
163 PRK14275 phosphate ABC transpo 98.3 3.1E-06 6.8E-11 57.7 6.8 46 9-55 225-270 (286)
164 PRK11288 araG L-arabinose tran 98.3 1.4E-06 3.1E-11 63.4 5.5 47 7-53 437-483 (501)
165 PRK09700 D-allose transporter 98.3 1.8E-06 3.8E-11 63.0 5.9 47 7-53 186-232 (510)
166 PRK14271 phosphate ABC transpo 98.3 3.1E-06 6.6E-11 57.5 6.7 47 8-55 205-251 (276)
167 PRK13633 cobalt transporter AT 98.3 2.1E-06 4.6E-11 58.3 5.9 47 9-56 187-234 (280)
168 PRK13640 cbiO cobalt transport 98.3 2.4E-06 5.2E-11 58.2 6.1 47 8-55 185-232 (282)
169 PRK14255 phosphate ABC transpo 98.3 2.9E-06 6.2E-11 56.6 6.4 47 9-56 191-237 (252)
170 cd03289 ABCC_CFTR2 The CFTR su 98.3 3E-06 6.6E-11 57.7 6.5 41 15-56 186-226 (275)
171 cd03266 ABC_NatA_sodium_export 98.3 2.3E-06 5.1E-11 55.8 5.5 41 8-48 178-218 (218)
172 COG1137 YhbG ABC-type (unclass 98.3 2.6E-06 5.7E-11 55.9 5.5 53 5-57 177-230 (243)
173 PRK14261 phosphate ABC transpo 98.3 3.6E-06 7.9E-11 56.2 6.5 46 9-55 192-237 (253)
174 cd03251 ABCC_MsbA MsbA is an e 98.3 3E-06 6.6E-11 55.8 6.0 47 9-57 181-227 (234)
175 cd03301 ABC_MalK_N The N-termi 98.3 2.3E-06 5.1E-11 55.6 5.3 41 8-48 172-213 (213)
176 PRK13635 cbiO cobalt transport 98.3 3.4E-06 7.5E-11 57.3 6.3 48 7-55 181-229 (279)
177 TIGR01184 ntrCD nitrate transp 98.3 1.6E-06 3.5E-11 57.3 4.6 45 9-53 157-202 (230)
178 cd03259 ABC_Carb_Solutes_like 98.3 2.3E-06 5.1E-11 55.7 5.3 42 7-48 171-213 (213)
179 cd03263 ABC_subfamily_A The AB 98.3 3.5E-06 7.6E-11 55.1 6.1 44 9-53 176-219 (220)
180 PRK13549 xylose transporter AT 98.3 1.7E-06 3.8E-11 63.0 5.1 47 7-53 184-230 (506)
181 COG0410 LivF ABC-type branched 98.3 3.8E-06 8.3E-11 55.8 6.2 51 6-56 176-227 (237)
182 PRK10982 galactose/methyl gala 98.3 2.8E-06 6.1E-11 61.7 6.1 46 8-53 176-221 (491)
183 cd03257 ABC_NikE_OppD_transpor 98.3 2.4E-06 5.2E-11 56.0 5.2 41 8-48 187-228 (228)
184 CHL00131 ycf16 sulfate ABC tra 98.3 3.4E-06 7.4E-11 56.2 6.0 44 9-52 194-238 (252)
185 PRK09580 sufC cysteine desulfu 98.3 5.3E-06 1.1E-10 55.1 6.9 45 9-53 188-233 (248)
186 PRK14246 phosphate ABC transpo 98.3 4.7E-06 1E-10 56.0 6.7 47 9-56 196-242 (257)
187 PRK10762 D-ribose transporter 98.3 1.9E-06 4E-11 62.8 5.1 47 7-53 436-482 (501)
188 TIGR03864 PQQ_ABC_ATP ABC tran 98.2 4.6E-06 9.9E-11 55.2 6.5 48 8-56 174-222 (236)
189 PRK13648 cbiO cobalt transport 98.2 3.1E-06 6.6E-11 57.2 5.7 48 8-56 184-232 (269)
190 PRK10419 nikE nickel transport 98.2 3.1E-06 6.8E-11 57.2 5.7 46 9-54 194-240 (268)
191 cd03252 ABCC_Hemolysin The ABC 98.2 5.6E-06 1.2E-10 54.7 6.8 46 9-56 181-226 (237)
192 cd03226 ABC_cobalt_CbiO_domain 98.2 2.2E-06 4.7E-11 55.6 4.7 39 7-45 167-205 (205)
193 PRK14266 phosphate ABC transpo 98.2 5.1E-06 1.1E-10 55.4 6.6 47 9-56 189-235 (250)
194 PRK10762 D-ribose transporter 98.2 2.1E-06 4.5E-11 62.5 5.1 45 9-53 184-228 (501)
195 cd03297 ABC_ModC_molybdenum_tr 98.2 2.9E-06 6.3E-11 55.3 5.3 41 8-48 173-214 (214)
196 PRK13642 cbiO cobalt transport 98.2 4.2E-06 9.1E-11 56.8 6.2 48 8-56 182-230 (277)
197 cd03298 ABC_ThiQ_thiamine_tran 98.2 3E-06 6.6E-11 55.1 5.3 39 9-47 171-210 (211)
198 cd03216 ABC_Carb_Monos_I This 98.2 4.1E-06 8.8E-11 52.7 5.7 40 7-46 123-162 (163)
199 TIGR03269 met_CoM_red_A2 methy 98.2 4.2E-06 9E-11 61.2 6.5 48 9-56 211-259 (520)
200 PRK14265 phosphate ABC transpo 98.2 5.6E-06 1.2E-10 56.1 6.7 48 8-56 203-259 (274)
201 PRK14243 phosphate transporter 98.2 5E-06 1.1E-10 56.0 6.4 47 9-56 194-249 (264)
202 TIGR01277 thiQ thiamine ABC tr 98.2 3.1E-06 6.7E-11 55.2 5.1 42 8-49 170-212 (213)
203 PRK15056 manganese/iron transp 98.2 4.7E-06 1E-10 56.4 6.0 47 7-54 183-229 (272)
204 PRK14263 phosphate ABC transpo 98.2 6.6E-06 1.4E-10 55.4 6.7 47 8-55 191-245 (261)
205 cd03269 ABC_putative_ATPase Th 98.2 3.9E-06 8.4E-11 54.5 5.4 41 8-48 170-210 (210)
206 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.2 4.3E-06 9.3E-11 55.1 5.7 41 8-48 184-224 (224)
207 TIGR02633 xylG D-xylose ABC tr 98.2 3.1E-06 6.7E-11 61.6 5.3 45 8-52 183-227 (500)
208 PRK14260 phosphate ABC transpo 98.2 6E-06 1.3E-10 55.4 6.3 46 9-55 193-243 (259)
209 PRK14259 phosphate ABC transpo 98.2 6.3E-06 1.4E-10 55.7 6.4 48 8-56 196-254 (269)
210 cd03254 ABCC_Glucan_exporter_l 98.2 8.1E-06 1.8E-10 53.6 6.7 45 9-55 182-226 (229)
211 COG1129 MglA ABC-type sugar tr 98.2 4.1E-06 8.8E-11 61.1 5.5 43 7-49 186-228 (500)
212 cd03217 ABC_FeS_Assembly ABC-t 98.2 9.7E-06 2.1E-10 52.5 6.7 44 8-51 146-190 (200)
213 cd03270 ABC_UvrA_I The excisio 98.2 3.5E-06 7.7E-11 55.7 4.8 40 8-48 181-226 (226)
214 PRK14241 phosphate transporter 98.2 8.3E-06 1.8E-10 54.7 6.5 46 9-55 191-242 (258)
215 COG4148 ModC ABC-type molybdat 98.2 4.3E-06 9.2E-11 57.4 5.1 49 9-57 171-220 (352)
216 TIGR02633 xylG D-xylose ABC tr 98.2 3.7E-06 8E-11 61.2 5.1 44 8-51 445-488 (500)
217 cd03293 ABC_NrtD_SsuB_transpor 98.2 4.9E-06 1.1E-10 54.5 5.1 43 8-50 173-218 (220)
218 cd03253 ABCC_ATM1_transporter 98.1 1.1E-05 2.5E-10 53.1 6.6 46 8-55 179-224 (236)
219 PRK09700 D-allose transporter 98.1 5.6E-06 1.2E-10 60.4 5.4 44 7-50 450-493 (510)
220 PRK10982 galactose/methyl gala 98.1 6.4E-06 1.4E-10 59.8 5.7 44 7-50 432-475 (491)
221 PRK11247 ssuB aliphatic sulfon 98.1 7.1E-06 1.5E-10 55.3 5.4 43 9-51 176-219 (257)
222 cd03232 ABC_PDR_domain2 The pl 98.1 6.3E-06 1.4E-10 53.1 4.9 41 8-48 150-192 (192)
223 cd03214 ABC_Iron-Siderophores_ 98.1 8.3E-06 1.8E-10 52.0 5.4 40 8-47 139-179 (180)
224 TIGR00960 3a0501s02 Type II (G 98.1 5.1E-06 1.1E-10 54.2 4.5 37 8-44 180-216 (216)
225 PLN03211 ABC transporter G-25; 98.1 5.7E-06 1.2E-10 62.3 5.3 52 6-57 246-298 (659)
226 cd03267 ABC_NatA_like Similar 98.1 8.7E-06 1.9E-10 54.0 5.6 41 8-48 195-236 (236)
227 PRK15177 Vi polysaccharide exp 98.1 1.4E-05 3E-10 52.4 6.4 41 16-56 153-193 (213)
228 PRK10908 cell division protein 98.1 7.9E-06 1.7E-10 53.6 5.2 39 8-46 179-217 (222)
229 cd03213 ABCG_EPDR ABCG transpo 98.1 8.8E-06 1.9E-10 52.5 5.3 40 9-48 154-194 (194)
230 cd03264 ABC_drug_resistance_li 98.1 8.3E-06 1.8E-10 53.0 5.2 40 8-48 172-211 (211)
231 cd03234 ABCG_White The White s 98.1 8.2E-06 1.8E-10 53.6 5.2 41 8-48 185-226 (226)
232 COG4987 CydC ABC-type transpor 98.1 4.3E-06 9.3E-11 61.3 4.0 47 7-55 515-561 (573)
233 cd03288 ABCC_SUR2 The SUR doma 98.1 1.5E-05 3.4E-10 53.4 6.3 40 15-55 204-243 (257)
234 TIGR00955 3a01204 The Eye Pigm 98.1 7.6E-06 1.7E-10 61.1 5.2 53 5-57 205-258 (617)
235 PRK13632 cbiO cobalt transport 98.1 1.2E-05 2.6E-10 54.4 5.7 47 8-55 184-231 (271)
236 PRK11288 araG L-arabinose tran 98.1 1.1E-05 2.4E-10 58.8 5.9 43 7-49 181-223 (501)
237 PRK14264 phosphate ABC transpo 98.1 1.7E-05 3.7E-10 54.6 6.4 47 8-55 242-289 (305)
238 PRK14254 phosphate ABC transpo 98.0 2E-05 4.3E-10 53.8 6.5 47 8-55 222-269 (285)
239 PRK09544 znuC high-affinity zi 98.0 1.4E-05 3.1E-10 53.6 5.7 47 8-55 162-209 (251)
240 cd03215 ABC_Carb_Monos_II This 98.0 8.2E-06 1.8E-10 52.1 4.3 37 8-44 146-182 (182)
241 cd03262 ABC_HisP_GlnQ_permease 98.0 8.5E-06 1.8E-10 52.9 4.4 38 7-44 176-213 (213)
242 cd03225 ABC_cobalt_CbiO_domain 98.0 7.8E-06 1.7E-10 53.1 4.2 37 7-43 175-211 (211)
243 cd03235 ABC_Metallic_Cations A 98.0 1.3E-05 2.9E-10 52.1 5.0 40 7-47 173-212 (213)
244 TIGR02673 FtsE cell division A 98.0 1E-05 2.2E-10 52.7 4.3 36 8-43 179-214 (214)
245 cd03292 ABC_FtsE_transporter F 98.0 1.1E-05 2.4E-10 52.4 4.5 37 8-44 178-214 (214)
246 COG4674 Uncharacterized ABC-ty 98.0 2E-05 4.3E-10 51.8 5.5 51 7-58 188-238 (249)
247 PRK15064 ABC transporter ATP-b 98.0 2.3E-05 4.9E-10 57.5 6.5 42 13-54 199-241 (530)
248 cd03369 ABCC_NFT1 Domain 2 of 98.0 1.7E-05 3.7E-10 51.5 5.2 40 8-49 167-206 (207)
249 PRK11248 tauB taurine transpor 97.9 2.7E-05 5.8E-10 52.3 5.6 44 8-51 170-216 (255)
250 PRK15064 ABC transporter ATP-b 97.9 3.5E-05 7.5E-10 56.6 6.6 41 16-56 485-526 (530)
251 COG1116 TauB ABC-type nitrate/ 97.9 1.7E-05 3.6E-10 53.3 4.5 31 12-42 177-207 (248)
252 cd03230 ABC_DR_subfamily_A Thi 97.9 1.8E-05 3.9E-10 50.1 4.4 38 7-44 136-173 (173)
253 COG4988 CydD ABC-type transpor 97.9 2.4E-05 5.2E-10 57.7 5.1 46 9-56 499-544 (559)
254 cd03271 ABC_UvrA_II The excisi 97.9 3.6E-05 7.8E-10 52.2 5.5 42 8-50 214-261 (261)
255 cd03246 ABCC_Protease_Secretio 97.9 1.9E-05 4.1E-10 50.0 3.9 36 8-44 138-173 (173)
256 COG1136 SalX ABC-type antimicr 97.9 2.4E-05 5.2E-10 52.0 4.5 39 5-44 181-220 (226)
257 cd03245 ABCC_bacteriocin_expor 97.9 3.4E-05 7.4E-10 50.4 5.1 38 8-47 182-219 (220)
258 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.9 2.2E-05 4.7E-10 51.2 4.2 37 7-44 181-218 (218)
259 COG4138 BtuD ABC-type cobalami 97.9 6.1E-06 1.3E-10 53.4 1.4 47 9-55 175-221 (248)
260 COG1132 MdlB ABC-type multidru 97.9 5.2E-05 1.1E-09 56.0 6.4 41 15-56 513-553 (567)
261 TIGR03796 NHPM_micro_ABC1 NHPM 97.9 4.8E-05 1.1E-09 57.5 6.3 41 15-56 661-701 (710)
262 TIGR03375 type_I_sec_LssB type 97.9 7.2E-05 1.6E-09 56.5 7.2 42 15-57 649-690 (694)
263 cd03229 ABC_Class3 This class 97.8 3.3E-05 7.1E-10 49.1 4.4 36 8-43 142-178 (178)
264 TIGR00958 3a01208 Conjugate Tr 97.8 5.7E-05 1.2E-09 57.3 6.4 42 15-57 663-704 (711)
265 cd03291 ABCC_CFTR1 The CFTR su 97.8 7.4E-05 1.6E-09 51.1 6.3 40 15-55 208-247 (282)
266 COG4181 Predicted ABC-type tra 97.8 2.9E-05 6.3E-10 50.1 4.0 42 4-46 184-226 (228)
267 TIGR01842 type_I_sec_PrtD type 97.8 5.8E-05 1.3E-09 55.5 6.1 46 9-55 497-542 (544)
268 COG3845 ABC-type uncharacteriz 97.8 5E-05 1.1E-09 55.2 5.2 41 8-48 182-222 (501)
269 cd03247 ABCC_cytochrome_bd The 97.8 8.1E-05 1.7E-09 47.3 5.7 38 9-48 141-178 (178)
270 COG1129 MglA ABC-type sugar tr 97.8 4.8E-05 1E-09 55.7 5.1 45 7-51 442-486 (500)
271 PRK10790 putative multidrug tr 97.8 9.7E-05 2.1E-09 54.8 6.7 41 15-56 524-564 (592)
272 TIGR03797 NHPM_micro_ABC2 NHPM 97.8 8.5E-05 1.8E-09 56.1 6.4 40 16-56 635-674 (686)
273 cd03244 ABCC_MRP_domain2 Domai 97.8 8.3E-05 1.8E-09 48.6 5.5 39 9-49 182-220 (221)
274 PRK10636 putative ABC transpor 97.8 8.2E-05 1.8E-09 55.9 6.0 39 16-54 477-516 (638)
275 PLN03232 ABC transporter C fam 97.8 9.2E-05 2E-09 60.3 6.7 42 15-57 1419-1460(1495)
276 TIGR01846 type_I_sec_HlyB type 97.8 9.1E-05 2E-09 56.0 6.3 41 15-56 641-681 (694)
277 PRK11174 cysteine/glutathione 97.8 0.0001 2.2E-09 54.6 6.5 41 15-56 533-573 (588)
278 TIGR00630 uvra excinuclease AB 97.7 7.6E-05 1.7E-09 58.2 5.9 48 7-55 530-583 (924)
279 PRK11176 lipid transporter ATP 97.7 0.00011 2.4E-09 54.3 6.5 41 15-56 528-568 (582)
280 PLN03130 ABC transporter C fam 97.7 0.00011 2.3E-09 60.3 6.6 41 15-56 1422-1462(1622)
281 COG1101 PhnK ABC-type uncharac 97.7 7.1E-05 1.5E-09 49.8 4.6 37 12-48 195-231 (263)
282 PRK11629 lolD lipoprotein tran 97.7 0.00011 2.5E-09 48.4 5.7 41 8-49 187-228 (233)
283 TIGR00957 MRP_assoc_pro multi 97.7 0.00012 2.6E-09 59.7 6.8 41 15-56 1469-1509(1522)
284 PRK00349 uvrA excinuclease ABC 97.7 9.6E-05 2.1E-09 57.8 5.9 48 7-55 532-585 (943)
285 PRK10584 putative ABC transpor 97.7 0.0001 2.2E-09 48.4 5.3 38 8-46 188-226 (228)
286 COG4167 SapF ABC-type antimicr 97.7 6.5E-05 1.4E-09 49.1 4.1 44 14-57 198-241 (267)
287 cd03238 ABC_UvrA The excision 97.7 0.00011 2.4E-09 47.1 5.1 35 9-44 132-166 (176)
288 PTZ00243 ABC transporter; Prov 97.7 0.00013 2.8E-09 59.6 6.6 41 15-56 1494-1534(1560)
289 TIGR01192 chvA glucan exporter 97.7 0.00018 4E-09 53.5 6.8 41 15-56 519-559 (585)
290 TIGR01193 bacteriocin_ABC ABC- 97.7 0.00014 3E-09 55.1 6.1 41 15-56 658-698 (708)
291 TIGR02211 LolD_lipo_ex lipopro 97.7 9.6E-05 2.1E-09 48.3 4.7 37 8-45 183-220 (221)
292 PRK10789 putative multidrug tr 97.7 0.00014 3.1E-09 53.8 6.1 41 15-56 499-539 (569)
293 PRK11160 cysteine/glutathione 97.7 0.00018 3.9E-09 53.4 6.6 41 15-56 523-563 (574)
294 COG2884 FtsE Predicted ATPase 97.7 9.6E-05 2.1E-09 48.3 4.5 46 4-49 175-220 (223)
295 PLN03073 ABC transporter F fam 97.7 0.00019 4.1E-09 54.8 6.7 39 16-54 674-713 (718)
296 TIGR00956 3a01205 Pleiotropic 97.7 9.3E-05 2E-09 59.9 5.3 53 4-56 247-301 (1394)
297 PRK13657 cyclic beta-1,2-gluca 97.6 0.00016 3.4E-09 53.7 6.2 41 15-56 519-559 (588)
298 COG2274 SunT ABC-type bacterio 97.6 0.00012 2.5E-09 55.8 5.4 47 8-56 651-697 (709)
299 PRK11819 putative ABC transpor 97.6 0.00022 4.7E-09 52.8 6.6 38 16-53 210-248 (556)
300 cd03237 ABC_RNaseL_inhibitor_d 97.6 0.0002 4.2E-09 48.0 5.8 45 8-52 157-204 (246)
301 COG4107 PhnK ABC-type phosphon 97.6 7.9E-05 1.7E-09 48.4 3.5 54 7-60 192-246 (258)
302 TIGR03719 ABC_ABC_ChvD ATP-bin 97.6 0.00024 5.2E-09 52.5 6.6 38 16-53 208-246 (552)
303 cd03236 ABC_RNaseL_inhibitor_d 97.6 0.0001 2.2E-09 49.7 4.2 39 7-46 180-218 (255)
304 COG4161 ArtP ABC-type arginine 97.6 0.00013 2.8E-09 46.9 4.2 45 9-53 184-228 (242)
305 PLN03140 ABC transporter G fam 97.6 0.00014 3E-09 59.2 5.3 53 5-57 375-429 (1470)
306 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 0.00015 3.3E-09 44.7 4.5 28 16-43 117-144 (144)
307 TIGR01271 CFTR_protein cystic 97.6 0.00027 5.7E-09 57.7 6.8 40 15-55 1401-1440(1490)
308 PRK00349 uvrA excinuclease ABC 97.6 0.00026 5.6E-09 55.5 6.4 49 8-57 875-929 (943)
309 PRK10535 macrolide transporter 97.6 0.00016 3.4E-09 54.6 5.1 45 9-54 187-231 (648)
310 TIGR02204 MsbA_rel ABC transpo 97.6 0.00028 6E-09 52.2 6.2 45 9-55 519-563 (576)
311 cd00267 ABC_ATPase ABC (ATP-bi 97.5 0.00019 4.2E-09 44.6 4.6 35 9-43 123-157 (157)
312 COG3845 ABC-type uncharacteriz 97.5 0.00011 2.4E-09 53.5 3.9 45 8-52 445-489 (501)
313 TIGR02203 MsbA_lipidA lipid A 97.5 0.00027 5.9E-09 52.1 6.0 46 8-55 511-556 (571)
314 cd03222 ABC_RNaseL_inhibitor T 97.5 0.00022 4.8E-09 45.7 4.7 37 9-45 114-151 (177)
315 cd03228 ABCC_MRP_Like The MRP 97.5 0.00021 4.5E-09 45.2 4.5 33 9-43 139-171 (171)
316 TIGR02982 heterocyst_DevA ABC 97.5 0.00023 5E-09 46.6 4.8 37 7-44 182-219 (220)
317 PRK10636 putative ABC transpor 97.5 0.00043 9.2E-09 52.2 6.7 41 13-53 193-234 (638)
318 KOG0055|consensus 97.5 0.0003 6.5E-09 56.0 5.9 46 11-57 533-578 (1228)
319 PRK11147 ABC transporter ATPas 97.5 0.00047 1E-08 51.9 6.7 38 16-53 203-241 (635)
320 cd03233 ABC_PDR_domain1 The pl 97.4 0.0003 6.5E-09 45.7 4.8 42 7-48 159-202 (202)
321 cd03279 ABC_sbcCD SbcCD and ot 97.4 0.00028 6.1E-09 46.1 4.6 35 9-43 176-210 (213)
322 TIGR00630 uvra excinuclease AB 97.4 0.00039 8.4E-09 54.4 6.0 45 8-53 873-923 (924)
323 PLN03073 ABC transporter F fam 97.4 0.00057 1.2E-08 52.2 6.6 41 12-52 387-428 (718)
324 PRK00635 excinuclease ABC subu 97.4 0.00047 1E-08 57.0 6.4 47 8-55 854-906 (1809)
325 PRK10938 putative molybdenum t 97.4 0.00022 4.7E-09 51.9 4.2 42 7-48 442-485 (490)
326 cd03248 ABCC_TAP TAP, the Tran 97.4 0.00033 7.2E-09 45.9 4.4 34 9-44 193-226 (226)
327 cd03250 ABCC_MRP_domain1 Domai 97.4 0.00036 7.8E-09 45.1 4.4 31 12-43 174-204 (204)
328 TIGR00956 3a01205 Pleiotropic 97.3 0.00028 6.1E-09 57.2 4.3 47 5-51 941-989 (1394)
329 COG4618 ArpD ABC-type protease 97.3 0.0003 6.5E-09 51.7 3.9 49 9-58 515-563 (580)
330 PRK11819 putative ABC transpor 97.3 0.0011 2.3E-08 49.2 6.7 39 17-55 493-533 (556)
331 PLN03140 ABC transporter G fam 97.3 0.00041 8.8E-09 56.6 4.8 47 5-51 1058-1106(1470)
332 KOG0054|consensus 97.3 0.00047 1E-08 55.7 5.0 40 15-55 692-731 (1381)
333 PRK13543 cytochrome c biogenes 97.3 0.00043 9.4E-09 45.2 4.1 34 8-41 179-212 (214)
334 PRK00635 excinuclease ABC subu 97.3 0.00081 1.8E-08 55.7 6.3 47 7-54 519-571 (1809)
335 TIGR03719 ABC_ABC_ChvD ATP-bin 97.3 0.0012 2.6E-08 48.9 6.6 39 17-55 491-531 (552)
336 PRK13409 putative ATPase RIL; 97.2 0.00054 1.2E-08 51.3 4.7 42 7-49 494-536 (590)
337 KOG0057|consensus 97.2 0.0008 1.7E-08 49.8 5.3 41 14-55 534-574 (591)
338 COG4170 SapD ABC-type antimicr 97.2 0.00058 1.3E-08 45.7 4.1 55 7-61 199-254 (330)
339 TIGR01271 CFTR_protein cystic 97.2 0.0011 2.4E-08 54.3 6.3 40 15-55 597-636 (1490)
340 COG0396 sufC Cysteine desulfur 97.2 0.0015 3.2E-08 43.8 5.8 49 9-58 187-236 (251)
341 PTZ00243 ABC transporter; Prov 97.2 0.0014 3.1E-08 53.8 6.7 40 15-55 831-870 (1560)
342 PLN03232 ABC transporter C fam 97.2 0.0011 2.4E-08 54.2 6.1 40 15-55 789-828 (1495)
343 TIGR00957 MRP_assoc_pro multi 97.2 0.0009 1.9E-08 54.8 5.5 40 15-55 811-850 (1522)
344 KOG0055|consensus 97.1 0.00097 2.1E-08 53.3 5.2 46 12-58 1171-1216(1228)
345 PLN03130 ABC transporter C fam 97.1 0.0014 3E-08 54.0 6.1 40 15-55 789-828 (1622)
346 PRK10247 putative ABC transpor 97.1 0.00063 1.4E-08 44.8 3.1 41 8-49 179-221 (225)
347 cd03290 ABCC_SUR1_N The SUR do 97.0 0.0011 2.3E-08 43.3 4.1 33 10-43 186-218 (218)
348 PTZ00265 multidrug resistance 97.0 0.0021 4.6E-08 52.6 5.9 33 9-42 622-655 (1466)
349 PRK11147 ABC transporter ATPas 97.0 0.0021 4.6E-08 48.4 5.6 38 16-53 487-526 (635)
350 TIGR02324 CP_lyasePhnL phospho 96.9 0.0015 3.2E-08 42.8 3.9 31 9-39 192-222 (224)
351 PTZ00265 multidrug resistance 96.9 0.003 6.6E-08 51.7 5.9 40 15-55 1408-1452(1466)
352 PRK13409 putative ATPase RIL; 96.8 0.0025 5.5E-08 47.8 4.8 34 8-42 254-287 (590)
353 KOG0061|consensus 96.8 0.0015 3.3E-08 49.2 3.4 55 3-57 207-262 (613)
354 KOG0058|consensus 96.8 0.0032 6.9E-08 47.9 5.1 42 15-57 652-693 (716)
355 TIGR01194 cyc_pep_trnsptr cycl 96.8 0.0032 7E-08 46.7 5.1 34 14-48 519-552 (555)
356 KOG0054|consensus 96.7 0.0036 7.9E-08 50.8 5.0 43 15-58 1323-1365(1381)
357 COG4525 TauB ABC-type taurine 96.6 0.011 2.3E-07 39.3 6.1 49 11-60 178-228 (259)
358 COG0178 UvrA Excinuclease ATPa 96.6 0.0085 1.8E-07 46.5 6.2 51 6-57 523-579 (935)
359 cd03223 ABCD_peroxisomal_ALDP 96.5 0.0046 1E-07 38.9 4.1 27 16-43 138-164 (166)
360 cd03280 ABC_MutS2 MutS2 homolo 96.5 0.003 6.4E-08 40.9 3.0 39 9-48 134-172 (200)
361 PRK10522 multidrug transporter 96.4 0.0067 1.5E-07 44.8 4.7 32 15-47 499-530 (547)
362 TIGR03608 L_ocin_972_ABC putat 96.4 0.0056 1.2E-07 39.5 3.8 30 9-39 177-206 (206)
363 COG5265 ATM1 ABC-type transpor 96.2 0.014 3.1E-07 42.4 5.2 42 14-56 446-487 (497)
364 COG1119 ModF ABC-type molybden 96.2 0.01 2.2E-07 40.1 4.1 33 16-48 223-255 (257)
365 cd03275 ABC_SMC1_euk Eukaryoti 96.1 0.013 2.9E-07 39.1 4.5 34 8-42 201-234 (247)
366 cd03231 ABC_CcmA_heme_exporter 95.9 0.011 2.4E-07 38.2 3.3 32 8-39 167-198 (201)
367 cd03240 ABC_Rad50 The catalyti 95.8 0.019 4.1E-07 37.4 4.2 34 8-42 164-198 (204)
368 PRK13538 cytochrome c biogenes 95.7 0.015 3.2E-07 37.7 3.4 31 9-39 172-202 (204)
369 COG0488 Uup ATPase components 95.7 0.021 4.5E-07 42.5 4.4 43 10-52 194-237 (530)
370 COG0178 UvrA Excinuclease ATPa 95.7 0.017 3.7E-07 45.0 4.0 50 7-57 866-921 (935)
371 cd03278 ABC_SMC_barmotin Barmo 95.3 0.035 7.5E-07 36.0 4.2 31 9-41 160-190 (197)
372 COG0488 Uup ATPase components 95.3 0.078 1.7E-06 39.6 6.2 43 12-55 482-525 (530)
373 cd03277 ABC_SMC5_euk Eukaryoti 95.2 0.016 3.5E-07 38.1 2.4 36 8-43 172-211 (213)
374 cd03285 ABC_MSH2_euk MutS2 hom 95.1 0.026 5.7E-07 37.3 3.2 34 15-49 142-175 (222)
375 TIGR00618 sbcc exonuclease Sbc 95.1 0.039 8.5E-07 44.0 4.5 35 8-42 1002-1036(1042)
376 TIGR02858 spore_III_AA stage I 94.9 0.028 6.1E-07 38.4 2.9 38 14-53 217-267 (270)
377 TIGR00634 recN DNA repair prot 94.9 0.042 9.1E-07 41.1 3.9 33 9-43 487-519 (563)
378 cd03239 ABC_SMC_head The struc 94.8 0.061 1.3E-06 34.4 4.1 32 9-41 141-172 (178)
379 KOG0056|consensus 94.7 0.062 1.4E-06 40.2 4.4 48 9-58 717-764 (790)
380 PRK13539 cytochrome c biogenes 94.6 0.047 1E-06 35.4 3.3 32 8-41 169-200 (207)
381 cd03241 ABC_RecN RecN ATPase i 94.3 0.07 1.5E-06 36.3 3.8 27 16-43 223-249 (276)
382 cd03276 ABC_SMC6_euk Eukaryoti 94.3 0.037 8.1E-07 35.9 2.2 27 16-43 166-192 (198)
383 PRK07721 fliI flagellum-specif 94.2 0.079 1.7E-06 38.7 4.0 34 18-53 308-341 (438)
384 COG4619 ABC-type uncharacteriz 94.0 0.084 1.8E-06 34.4 3.4 32 13-44 181-212 (223)
385 cd03274 ABC_SMC4_euk Eukaryoti 94.0 0.14 3E-06 33.6 4.6 31 9-41 174-204 (212)
386 cd03243 ABC_MutS_homologs The 93.9 0.029 6.4E-07 36.3 1.3 42 10-52 135-176 (202)
387 KOG0062|consensus 93.7 0.12 2.6E-06 38.5 4.1 36 11-46 524-559 (582)
388 cd03272 ABC_SMC3_euk Eukaryoti 93.5 0.18 4E-06 33.3 4.5 30 9-40 205-234 (243)
389 TIGR00954 3a01203 Peroxysomal 93.5 0.14 3E-06 39.1 4.4 27 14-41 627-653 (659)
390 KOG2355|consensus 93.5 0.13 2.8E-06 34.6 3.7 46 7-52 188-234 (291)
391 cd03227 ABC_Class2 ABC-type Cl 93.5 0.16 3.5E-06 31.7 4.0 25 16-41 131-155 (162)
392 COG4615 PvdE ABC-type sideroph 93.1 0.029 6.4E-07 40.8 0.3 38 10-48 493-530 (546)
393 cd03284 ABC_MutS1 MutS1 homolo 93.1 0.066 1.4E-06 35.3 1.8 43 10-53 136-179 (216)
394 PRK13830 conjugal transfer pro 93.0 0.16 3.4E-06 39.8 4.0 41 8-48 677-726 (818)
395 cd03273 ABC_SMC2_euk Eukaryoti 92.5 0.31 6.7E-06 32.5 4.5 25 15-40 218-242 (251)
396 PRK10869 recombination and rep 92.4 0.27 5.9E-06 36.9 4.5 33 8-42 476-508 (553)
397 TIGR02857 CydD thiol reductant 91.6 0.34 7.4E-06 35.7 4.2 24 15-39 506-529 (529)
398 PRK03918 chromosome segregatio 91.1 0.41 8.9E-06 37.4 4.4 28 13-41 841-868 (880)
399 PRK13695 putative NTPase; Prov 90.9 0.23 4.9E-06 31.3 2.4 38 9-47 119-156 (174)
400 cd01124 KaiC KaiC is a circadi 90.4 0.22 4.8E-06 31.3 2.0 33 9-41 123-164 (187)
401 KOG0059|consensus 89.6 0.78 1.7E-05 36.3 4.8 56 13-88 4-59 (885)
402 PRK13540 cytochrome c biogenes 88.8 0.29 6.3E-06 31.5 1.7 29 8-37 169-197 (200)
403 PHA02562 46 endonuclease subun 88.7 0.62 1.4E-05 34.5 3.5 29 15-44 526-555 (562)
404 PRK13541 cytochrome c biogenes 88.5 0.3 6.5E-06 31.3 1.6 24 12-36 169-192 (195)
405 KOG0065|consensus 87.7 0.4 8.7E-06 39.5 2.1 50 4-53 968-1019(1391)
406 cd03283 ABC_MutS-like MutS-lik 87.4 1.2 2.7E-05 28.9 4.0 30 9-38 131-162 (199)
407 PRK02224 chromosome segregatio 86.7 1.3 2.7E-05 34.8 4.3 33 10-43 837-870 (880)
408 TIGR01189 ccmA heme ABC export 85.7 0.73 1.6E-05 29.5 2.2 28 9-38 170-197 (198)
409 COG1245 Predicted ATPase, RNas 85.2 1.6 3.5E-05 32.6 3.9 34 7-40 254-287 (591)
410 KOG0927|consensus 84.2 1.6 3.5E-05 33.0 3.6 42 12-53 264-307 (614)
411 TIGR03880 KaiC_arch_3 KaiC dom 83.8 0.74 1.6E-05 30.1 1.7 33 8-40 136-177 (224)
412 TIGR02655 circ_KaiC circadian 83.8 0.94 2E-05 33.4 2.3 32 9-40 150-190 (484)
413 smart00534 MUTSac ATPase domai 83.5 1 2.2E-05 28.7 2.1 35 10-45 105-140 (185)
414 cd03282 ABC_MSH4_euk MutS4 hom 82.5 1.6 3.4E-05 28.6 2.8 26 9-34 134-159 (204)
415 KOG0065|consensus 81.1 3.1 6.7E-05 34.6 4.4 54 5-58 299-354 (1391)
416 PRK10246 exonuclease subunit S 79.4 3.4 7.4E-05 33.5 4.2 34 8-41 999-1032(1047)
417 cd03242 ABC_RecF RecF is a rec 78.5 3.6 7.7E-05 27.9 3.6 27 18-44 240-269 (270)
418 KOG0927|consensus 78.4 1.7 3.7E-05 32.9 2.1 44 12-55 552-596 (614)
419 PRK01156 chromosome segregatio 77.6 3 6.6E-05 32.9 3.4 23 17-40 861-883 (895)
420 KOG0062|consensus 74.9 0.78 1.7E-05 34.4 -0.4 47 7-53 236-283 (582)
421 PRK00064 recF recombination pr 73.1 9.9 0.00022 27.0 4.8 29 16-44 329-359 (361)
422 KOG0066|consensus 71.5 1.4 3.1E-05 33.0 0.2 33 16-48 459-491 (807)
423 TIGR00416 sms DNA repair prote 70.4 3 6.5E-05 30.7 1.7 35 9-43 204-247 (454)
424 TIGR02168 SMC_prok_B chromosom 69.5 6.2 0.00013 31.6 3.3 24 16-40 1142-1165(1179)
425 TIGR03881 KaiC_arch_4 KaiC dom 69.1 3.7 8E-05 26.8 1.8 29 12-40 152-188 (229)
426 TIGR00152 dephospho-CoA kinase 68.7 7.9 0.00017 24.5 3.2 30 14-43 103-134 (188)
427 COG1582 FlgEa Uncharacterized 68.1 15 0.00032 19.8 3.6 43 15-57 8-51 (67)
428 cd03286 ABC_MSH6_euk MutS6 hom 67.5 5.3 0.00011 26.5 2.2 23 11-33 137-160 (218)
429 COG4136 ABC-type uncharacteriz 67.4 4.1 8.9E-05 26.3 1.6 31 8-39 177-207 (213)
430 PRK06067 flagellar accessory p 66.5 7.8 0.00017 25.4 2.9 31 10-40 149-186 (234)
431 PRK09302 circadian clock prote 66.1 4.7 0.0001 29.8 2.0 31 10-40 161-200 (509)
432 PRK00409 recombination and DNA 63.1 8.1 0.00018 30.5 2.8 36 10-46 434-469 (782)
433 COG0419 SbcC ATPase involved i 62.9 15 0.00032 29.4 4.2 33 9-42 866-898 (908)
434 COG2401 ABC-type ATPase fused 62.3 12 0.00026 28.1 3.3 31 15-45 557-588 (593)
435 COG3044 Predicted ATPase of th 62.2 13 0.00028 27.7 3.5 32 14-45 381-412 (554)
436 TIGR02169 SMC_prok_A chromosom 61.1 16 0.00034 29.4 4.2 31 9-41 1121-1151(1164)
437 COG1245 Predicted ATPase, RNas 57.7 11 0.00025 28.4 2.6 28 14-41 504-531 (591)
438 TIGR00606 rad50 rad50. This fa 55.2 11 0.00024 31.4 2.4 20 15-34 1259-1278(1311)
439 cd03287 ABC_MSH3_euk MutS3 hom 54.3 15 0.00033 24.4 2.7 23 9-31 136-159 (222)
440 PF00837 T4_deiodinase: Iodoth 51.6 17 0.00037 24.6 2.6 35 16-50 182-219 (237)
441 cd03281 ABC_MSH5_euk MutS5 hom 51.5 20 0.00043 23.4 2.9 18 16-33 144-161 (213)
442 PRK13764 ATPase; Provisional 51.4 40 0.00088 26.0 4.8 34 11-44 344-392 (602)
443 PF09818 ABC_ATPase: Predicted 51.3 23 0.0005 26.3 3.4 35 9-43 380-415 (448)
444 COG3910 Predicted ATPase [Gene 49.2 23 0.00049 23.7 2.8 36 9-44 171-206 (233)
445 PF12399 BCA_ABC_TP_C: Branche 48.4 14 0.00031 15.6 1.2 15 43-57 1-15 (23)
446 PF02463 SMC_N: RecF/RecN/SMC 47.4 41 0.00089 21.6 3.9 30 8-39 182-211 (220)
447 PF01380 SIS: SIS domain SIS d 46.5 48 0.0011 19.1 3.8 37 9-45 73-110 (131)
448 KOG0066|consensus 46.4 16 0.00034 27.7 1.9 40 5-44 739-779 (807)
449 cd00544 CobU Adenosylcobinamid 44.0 61 0.0013 20.5 4.2 35 9-43 109-165 (169)
450 cd01120 RecA-like_NTPases RecA 40.2 26 0.00056 20.7 2.0 19 13-31 124-142 (165)
451 PRK13891 conjugal transfer pro 37.8 34 0.00073 27.4 2.7 23 9-31 713-735 (852)
452 TIGR02788 VirB11 P-type DNA tr 37.7 13 0.00027 25.8 0.3 38 17-55 244-281 (308)
453 cd05008 SIS_GlmS_GlmD_1 SIS (S 35.8 70 0.0015 18.4 3.4 31 12-42 69-100 (126)
454 PRK05800 cobU adenosylcobinami 33.9 1.1E+02 0.0024 19.2 4.2 35 9-43 109-165 (170)
455 TIGR01026 fliI_yscN ATPase Fli 33.2 34 0.00074 25.3 1.9 34 18-53 313-346 (440)
456 PRK13873 conjugal transfer ATP 31.5 48 0.001 26.3 2.6 24 8-31 660-683 (811)
457 PF06289 FlbD: Flagellar prote 30.7 36 0.00077 18.0 1.3 43 15-57 8-51 (60)
458 PLN03210 Resistant to P. syrin 30.3 75 0.0016 26.3 3.6 25 15-39 323-348 (1153)
459 TIGR00334 5S_RNA_mat_M5 ribonu 30.1 1.6E+02 0.0034 19.1 6.1 70 18-87 4-75 (174)
460 cd01128 rho_factor Transcripti 29.2 40 0.00086 22.8 1.6 33 12-45 180-212 (249)
461 PF05707 Zot: Zonular occluden 28.9 1.2E+02 0.0025 19.4 3.7 34 7-40 107-144 (193)
462 cd05014 SIS_Kpsf KpsF-like pro 28.2 74 0.0016 18.4 2.6 30 13-42 71-101 (128)
463 PRK06193 hypothetical protein; 27.7 69 0.0015 21.1 2.5 18 12-29 151-168 (206)
464 PRK04296 thymidine kinase; Pro 27.0 1.6E+02 0.0035 18.7 4.1 39 10-49 100-148 (190)
465 PRK13898 type IV secretion sys 26.7 66 0.0014 25.5 2.6 23 9-31 668-690 (800)
466 PF02283 CobU: Cobinamide kina 26.4 1.5E+02 0.0032 18.8 3.8 34 10-43 108-163 (167)
467 COG4778 PhnL ABC-type phosphon 25.0 1.2E+02 0.0027 20.1 3.2 35 7-41 193-227 (235)
468 cd01121 Sms Sms (bacterial rad 24.4 72 0.0016 23.0 2.3 31 13-43 197-235 (372)
469 PF07293 DUF1450: Protein of u 23.8 1.4E+02 0.0031 16.5 3.0 24 34-57 45-68 (78)
470 TIGR01069 mutS2 MutS2 family p 23.4 1.1E+02 0.0023 24.5 3.2 22 9-30 428-449 (771)
471 COG1188 Ribosome-associated he 22.2 1.3E+02 0.0029 17.6 2.7 51 1-67 9-59 (100)
472 COG0497 RecN ATPase involved i 21.1 1.5E+02 0.0032 22.9 3.4 34 7-42 476-509 (557)
473 PRK08533 flagellar accessory p 20.9 61 0.0013 21.4 1.3 19 9-28 146-164 (230)
474 PF12846 AAA_10: AAA-like doma 20.4 1.2E+02 0.0026 20.0 2.7 23 9-31 246-268 (304)
475 cd05710 SIS_1 A subgroup of th 20.3 1.6E+02 0.0036 17.1 3.0 28 15-42 73-101 (120)
476 TIGR03127 RuMP_HxlB 6-phospho 20.1 1.7E+02 0.0036 18.2 3.2 36 9-44 92-128 (179)
No 1
>KOG0059|consensus
Probab=99.12 E-value=3.1e-10 Score=87.19 Aligned_cols=84 Identities=30% Similarity=0.502 Sum_probs=74.2
Q ss_pred hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEEEeCCCch-hHHHHHHHhhhc
Q psy18239 6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQ-QNIKWFVAAYLK 84 (97)
Q Consensus 6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 84 (97)
+......+++|+++|++||.|++++.+|||+++|.+|++.+.|+++++..+++..|.+.+.+....+ ..+..+++..+|
T Consensus 738 W~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~gy~l~~~~~~~~~~~~v~~~~~~~~p 817 (885)
T KOG0059|consen 738 WDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGSGYTLTVRIKELPEVSEVEKLLQNRFP 817 (885)
T ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcCCcEEEEEEECCCcccchHHHHHHHhCC
Confidence 3345556666669999999999999999999999999999999999999999999999999998776 588889999999
Q ss_pred cceee
Q psy18239 85 GNTRR 89 (97)
Q Consensus 85 ~~~~~ 89 (97)
++..+
T Consensus 818 ~a~~~ 822 (885)
T KOG0059|consen 818 GAVLK 822 (885)
T ss_pred Ccchh
Confidence 98754
No 2
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.04 E-value=5.9e-10 Score=76.62 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=50.0
Q ss_pred hhhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceE
Q psy18239 5 RCQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQ 62 (97)
Q Consensus 5 ~~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 62 (97)
.+.+++++.+ .|.++|++|||+..++++|||+++|..|++++.|+..+++.++...|.
T Consensus 192 Il~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HPYT 250 (316)
T COG0444 192 ILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYT 250 (316)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCChHH
Confidence 3455666665 699999999999999999999999999999999999999887766553
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.02 E-value=4.9e-10 Score=75.39 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=45.5
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCce
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGY 61 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 61 (97)
...+.+ -++||++||||+++|..++||+.+|++|++...++|+++..++.+.+
T Consensus 178 ~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~F 231 (309)
T COG1125 178 IKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDF 231 (309)
T ss_pred HHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHH
Confidence 333443 49999999999999999999999999999999999999988776544
No 4
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.00 E-value=5.1e-09 Score=85.92 Aligned_cols=84 Identities=37% Similarity=0.627 Sum_probs=66.7
Q ss_pred hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEEEeCCCch------hHHHHHH
Q psy18239 6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQ------QNIKWFV 79 (97)
Q Consensus 6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~ 79 (97)
+..+.++.++|+|||++||++++++.+|||+++|.+|++.+.|+++++.++++..+.+.+.+..... ..+..++
T Consensus 2110 ~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~g~~l~i~~~~~~~~~~~~~~~v~~~i 2189 (2272)
T TIGR01257 2110 WNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFF 2189 (2272)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCCceEEEEEEcCcchhhhhHHHHHHHHH
Confidence 3445555556899999999999999999999999999999999999999999988888887764322 2345566
Q ss_pred Hhhhccceee
Q psy18239 80 AAYLKGNTRR 89 (97)
Q Consensus 80 ~~~~~~~~~~ 89 (97)
...+|+....
T Consensus 2190 ~~~fp~a~~~ 2199 (2272)
T TIGR01257 2190 QGNFPGSVQR 2199 (2272)
T ss_pred hhcCccceee
Confidence 7777866543
No 5
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.97 E-value=9.6e-10 Score=75.88 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=44.4
Q ss_pred cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceE
Q psy18239 14 QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQ 62 (97)
Q Consensus 14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 62 (97)
+-++||+++|||++++.++.|||.+|++|+++..|+|+++..++.+.|.
T Consensus 213 ~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV 261 (386)
T COG4175 213 KLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYV 261 (386)
T ss_pred HhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHH
Confidence 3479999999999999999999999999999999999999887776553
No 6
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.96 E-value=1.8e-09 Score=71.02 Aligned_cols=51 Identities=8% Similarity=0.107 Sum_probs=46.1
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
...++.++|+|.++|||+|.+|...+||+++|++|+++..|++++++.++.
T Consensus 178 vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 178 VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 356678889999999999999999999999999999999999999877654
No 7
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.93 E-value=8.5e-09 Score=70.94 Aligned_cols=52 Identities=27% Similarity=0.264 Sum_probs=45.0
Q ss_pred hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
+..+.++.++|.|||++||+++++..+||++++|++|++.+.|+++++....
T Consensus 178 ~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~ 229 (306)
T PRK13537 178 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESE 229 (306)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhcc
Confidence 3445556556899999999999999999999999999999999999987654
No 8
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.92 E-value=3.3e-09 Score=77.44 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=52.5
Q ss_pred hhhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEE
Q psy18239 5 RCQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQI 65 (97)
Q Consensus 5 ~~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 65 (97)
..++++.+.+ .|+++|++|||+..++++|||+++|.+|++++.|++++++.++...|.-.+
T Consensus 193 IL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~L 254 (539)
T COG1123 193 ILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGL 254 (539)
T ss_pred HHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHHH
Confidence 4455677664 599999999999999999999999999999999999999998877775443
No 9
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.91 E-value=2e-08 Score=82.58 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=69.6
Q ss_pred hhhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEEEeCCC--------------
Q psy18239 5 RCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPT-------------- 70 (97)
Q Consensus 5 ~~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~-------------- 70 (97)
-+..+++.+ +|+|||++||+++++..+|||+++|.+|++.+.|++..+.++++.+|.+.+.....
T Consensus 1100 l~~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~gy~l~~~~~~~~~~~~~~~~~~~~~ 1178 (2272)
T TIGR01257 1100 IWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQSQRGGCEGTCS 1178 (2272)
T ss_pred HHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCCcEEEEEEeccccccccccccccccc
Confidence 344555554 48999999999999999999999999999999999999999999999888765420
Q ss_pred -------------------------chhHHHHHHHhhhccceee
Q psy18239 71 -------------------------TQQNIKWFVAAYLKGNTRR 89 (97)
Q Consensus 71 -------------------------~~~~~~~~~~~~~~~~~~~ 89 (97)
....+.+++++.+|++.+.
T Consensus 1179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~iP~a~l~ 1222 (2272)
T TIGR01257 1179 CTSKGFSTRCPARVDEITPEQVLDGDVNELMDLVYHHVPEAKLV 1222 (2272)
T ss_pred ccccccccccccccccccccccccccHHHHHHHHHHhCCCcEEE
Confidence 1256788899999998764
No 10
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.89 E-value=4.1e-09 Score=71.01 Aligned_cols=51 Identities=10% Similarity=0.194 Sum_probs=44.4
Q ss_pred hhhhhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 5 RCQHSRKNS-QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 5 ~~~~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.++.++++. ++|+|+|+++||++.|.+|||++++|++|++...|+|.++.+
T Consensus 177 vl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 177 VLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 345566666 459999999999999999999999999999999999988754
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.89 E-value=3e-09 Score=73.05 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=46.4
Q ss_pred hhhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 5 RCQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 5 ~~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
...+++++++ .|.||+++||.|+.+..+|||+++|++|+++..|+..+++.++
T Consensus 180 IL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P 233 (339)
T COG1135 180 ILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233 (339)
T ss_pred HHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence 4556777665 4999999999999999999999999999999999999886654
No 12
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.87 E-value=9.2e-09 Score=69.87 Aligned_cols=60 Identities=15% Similarity=0.323 Sum_probs=54.0
Q ss_pred hhhh-ccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEEEeC
Q psy18239 9 SRKN-SQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFP 68 (97)
Q Consensus 9 ~~~~-~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 68 (97)
+++. .+++.||+++||+++.++.+|+|++.|+.|++++.|+.+.+...++....+.+.+.
T Consensus 199 lke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~~~~el~ 259 (325)
T COG4586 199 LKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELK 259 (325)
T ss_pred HHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCceEEEEEEc
Confidence 3443 34689999999999999999999999999999999999999999998888888887
No 13
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.86 E-value=2.1e-08 Score=70.02 Aligned_cols=53 Identities=26% Similarity=0.279 Sum_probs=45.4
Q ss_pred hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
+..+.++.++|.|||++||+++++..+||++++|++|++...|+++++.....
T Consensus 212 ~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~ 264 (340)
T PRK13536 212 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHI 264 (340)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhcc
Confidence 34455555568999999999999999999999999999999999999876543
No 14
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.84 E-value=2.4e-08 Score=68.48 Aligned_cols=57 Identities=26% Similarity=0.411 Sum_probs=48.5
Q ss_pred hhhhhhhhhccCC-cEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCc
Q psy18239 4 DRCQHSRKNSQTW-ISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVG 60 (97)
Q Consensus 4 ~~~~~~~~~~~~~-~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 60 (97)
.-++.++.+.++| +||+++||.++++..+||++++|++|++++.|++.++...+...
T Consensus 174 ~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~~ 231 (293)
T COG1131 174 EIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGK 231 (293)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhccC
Confidence 3455677777766 89999999999999999999999999999999999987765543
No 15
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.81 E-value=1.3e-08 Score=69.92 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=50.2
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEEEe
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKF 67 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 67 (97)
+.++.+ .|.|.+++|||.+++..+|||+++|++|++...|++++++..+.....+.+..
T Consensus 180 Lr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~fV~~f~G 239 (345)
T COG1118 180 LRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVARFLG 239 (345)
T ss_pred HHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCccceecccc
Confidence 444444 48999999999999999999999999999999999999999887766655544
No 16
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.80 E-value=1.7e-08 Score=66.03 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=43.6
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
..+++..|++++++||.|++++.+||+++++.+|.+++.|+.+.+....
T Consensus 176 i~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 176 IKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred HHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 4455666999999999999999999999999999999999999987643
No 17
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=1.7e-08 Score=70.07 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=44.0
Q ss_pred hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+..+.++.+ .|.|+|++|||++.+..+||++++|.+|+++..|+.+++...
T Consensus 198 ~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~~ 249 (330)
T PRK15093 198 FRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTT 249 (330)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 445566655 489999999999999999999999999999999999888654
No 18
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.79 E-value=2e-08 Score=66.94 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=46.4
Q ss_pred hhhhhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 4 DRCQHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 4 ~~~~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
..+..+.++.++ |.|+|++|||++.+..+||++++|++|+++..|++.++++..
T Consensus 176 ~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 176 ELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 344556777666 789999999999999999999999999999999998887643
No 19
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.79 E-value=1.7e-08 Score=70.15 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=44.4
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
..+.++.+ .|.|+|++|||++.+..+||++++|.+|+++..|+++++...+.
T Consensus 202 ~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p~ 254 (330)
T PRK09473 202 TLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPS 254 (330)
T ss_pred HHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 34555554 48999999999999999999999999999999999999876543
No 20
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.78 E-value=2.6e-08 Score=66.46 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=44.6
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
+.+..+++.|++++|||++.+.++||++++|++|.+...|++++..+.|.
T Consensus 190 l~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~ 239 (249)
T COG1134 190 LNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYE 239 (249)
T ss_pred HHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHH
Confidence 44554667999999999999999999999999999999999999887665
No 21
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.76 E-value=1.5e-08 Score=67.61 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=44.6
Q ss_pred hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.++.++++ .+.|+|++|||+..+..+|||+++|++|.++..++..++...
T Consensus 181 lnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 181 LNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 445666665 489999999999999999999999999999999999998664
No 22
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.76 E-value=4.7e-08 Score=67.03 Aligned_cols=52 Identities=25% Similarity=0.438 Sum_probs=44.9
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
..+.++.++|.|+|++||+++++..+||++++|++|++...|+++++.....
T Consensus 165 ~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~ 216 (302)
T TIGR01188 165 DYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLG 216 (302)
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHhcC
Confidence 3455555568999999999999999999999999999999999999876654
No 23
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.75 E-value=1.9e-08 Score=73.51 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=48.2
Q ss_pred hhhhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCce
Q psy18239 5 RCQHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGY 61 (97)
Q Consensus 5 ~~~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 61 (97)
.+.++.++.++ |.|++++|||+..+..+|||+++|.+|+++..|+.+.+++.+...|
T Consensus 468 VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Y 525 (539)
T COG1123 468 VLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPY 525 (539)
T ss_pred HHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChH
Confidence 34556666654 9999999999999999999999999999999999999877655433
No 24
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=3.1e-08 Score=68.78 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=44.9
Q ss_pred hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
..++.++.+ .|.|+|++|||++.+..+||++++|.+|+++..|+++++...+.
T Consensus 193 l~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p~ 246 (326)
T PRK11022 193 IELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPR 246 (326)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCC
Confidence 344556554 58999999999999999999999999999999999999876543
No 25
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.75 E-value=2.8e-08 Score=66.30 Aligned_cols=47 Identities=17% Similarity=0.310 Sum_probs=41.8
Q ss_pred hhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 10 RKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 10 ~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
..+++. |.|++|+|||++.+..+||+++++.+|++.+.|+++++.+.
T Consensus 189 ~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 189 RELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred HHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 344443 89999999999999999999999999999999999998763
No 26
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.74 E-value=2.2e-08 Score=67.26 Aligned_cols=52 Identities=19% Similarity=0.324 Sum_probs=46.7
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCc
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVG 60 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 60 (97)
..+++..|.|||++||.|+.++++||++.+|++|+.+.+|+..++...++..
T Consensus 173 I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk 224 (300)
T COG4152 173 IFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKK 224 (300)
T ss_pred HHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCc
Confidence 3456677999999999999999999999999999999999999998877643
No 27
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.73 E-value=3.2e-08 Score=68.83 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=44.1
Q ss_pred hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
...+.++.+ .+.|+|++|||++.+..+||++++|.+|+++..|+.+++...+
T Consensus 201 ~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 201 VNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNP 253 (331)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCC
Confidence 344555554 4899999999999999999999999999999999999887644
No 28
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.73 E-value=1e-07 Score=65.39 Aligned_cols=52 Identities=27% Similarity=0.282 Sum_probs=44.2
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
..+.++.++|.|+|++||+++++..+||++++|++|++...|+++++.....
T Consensus 176 ~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 227 (303)
T TIGR01288 176 ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQI 227 (303)
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhcC
Confidence 3455555568999999999999999999999999999999999999876543
No 29
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.73 E-value=3.1e-08 Score=69.30 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=43.3
Q ss_pred hhhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 6 CQHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 6 ~~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
...++++.++ |.|+|++||+++.+..+||++++|++|++...|++.+++.
T Consensus 180 ~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 180 LELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 4456666554 8999999999999999999999999999999999988764
No 30
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.73 E-value=3.6e-08 Score=69.38 Aligned_cols=49 Identities=16% Similarity=0.189 Sum_probs=42.6
Q ss_pred hhhhccC--CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 9 SRKNSQT--WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 9 ~~~~~~~--~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
+.++.++ |.|+|++|||++++..+||++++|++|++...|+++++...+
T Consensus 180 l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 180 IAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred HHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 4444444 789999999999999999999999999999999999987654
No 31
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=3.3e-08 Score=68.66 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=44.3
Q ss_pred hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
+..+.++.+ .|.|+|++|||++.+..+||++++|.+|+++..|+.+++...+
T Consensus 194 ~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p 246 (327)
T PRK11308 194 LNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNP 246 (327)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCC
Confidence 344556554 4899999999999999999999999999999999999887643
No 32
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.72 E-value=1.7e-08 Score=67.32 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=45.0
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
..++++++ .|.|++++.|||+.+..+|||+++|+.|+++++|+|+++.+++
T Consensus 190 ~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~dp 241 (250)
T COG0411 190 ELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNP 241 (250)
T ss_pred HHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcCH
Confidence 44566666 4799999999999999999999999999999999999987654
No 33
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=5.2e-08 Score=66.48 Aligned_cols=48 Identities=8% Similarity=0.085 Sum_probs=42.0
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+..+.+.|.|||++||+++++..+||++++|++|++...|+++++..
T Consensus 186 ~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 186 LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 344555568999999999999999999999999999999999999764
No 34
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.71 E-value=4.5e-08 Score=68.68 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=43.4
Q ss_pred hhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 7 QHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 7 ~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
..+.++.++ +.|+|++|||++++..+||++++|++|++...|++.+++..+
T Consensus 177 ~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 177 RWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228 (353)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 334455444 899999999999999999999999999999999999987654
No 35
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.71 E-value=4.3e-08 Score=68.75 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=43.0
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
.++++.+ .+.|+|++||+.+++..+||++++|++|++...|++++++..+
T Consensus 176 ~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 176 EIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 3444444 4899999999999999999999999999999999999987654
No 36
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=4.7e-08 Score=68.65 Aligned_cols=50 Identities=16% Similarity=0.095 Sum_probs=42.9
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
.++++.+ .|.|+|++||+.+++..+||++++|++|++...|++++++..+
T Consensus 176 ~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 176 EIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 3444444 3899999999999999999999999999999999999986644
No 37
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=5.6e-08 Score=68.16 Aligned_cols=50 Identities=26% Similarity=0.193 Sum_probs=42.9
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
++.+.+ .+.|+|++|||.+++..+||++++|++|++...|++++++..+.
T Consensus 179 l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 179 IRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 444444 48999999999999999999999999999999999999876543
No 38
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.68 E-value=4.9e-08 Score=68.77 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=42.2
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
+..+.+ .++|+|++||+++++..+||++++|++|++...|+++++...+
T Consensus 172 l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 172 LKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 444443 4899999999999999999999999999999999999986643
No 39
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=6.5e-08 Score=66.63 Aligned_cols=49 Identities=10% Similarity=0.065 Sum_probs=42.4
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.+.++.+.|.|+|++||+++.+..+||++++|++|++...|+++++...
T Consensus 207 ~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 207 IFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred HHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 3445555689999999999999999999999999999999999987653
No 40
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.67 E-value=3.7e-08 Score=69.00 Aligned_cols=47 Identities=28% Similarity=0.392 Sum_probs=42.8
Q ss_pred ccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcC
Q psy18239 13 SQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAV 59 (97)
Q Consensus 13 ~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 59 (97)
.+.|.|.|++|||-+++..++||+++|++|++...|+|.+++..+..
T Consensus 184 ~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~ 230 (352)
T COG3842 184 RELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPAT 230 (352)
T ss_pred HhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcch
Confidence 34599999999999999999999999999999999999999876643
No 41
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.66 E-value=8.1e-08 Score=68.47 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=41.8
Q ss_pred hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
...++++.+++.|+|++||+++++.++||++++|++|++...|+++++
T Consensus 179 ~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 179 LELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 344555655689999999999999999999999999999999999975
No 42
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.66 E-value=7.8e-08 Score=67.99 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=43.5
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
.++.+.+ .+.|+|++|||.+++..+||++++|++|++...|++.+++..+.
T Consensus 186 ~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 186 ELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 3444444 48999999999999999999999999999999999999876543
No 43
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.65 E-value=7.3e-08 Score=68.29 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=41.9
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.++.+ .++|+|++||+++++.++||++++|++|++...|+++++...
T Consensus 207 L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 207 LLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 444444 489999999999999999999999999999999999988654
No 44
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.63 E-value=6.3e-08 Score=69.03 Aligned_cols=56 Identities=23% Similarity=0.307 Sum_probs=49.0
Q ss_pred hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCce
Q psy18239 6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGY 61 (97)
Q Consensus 6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 61 (97)
+.+++.+.+ .|.+.+++|||+..+..+|+++++|.+|++++.|+.++++.++...|
T Consensus 466 v~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~Y 522 (534)
T COG4172 466 LDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEY 522 (534)
T ss_pred HHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHH
Confidence 456677654 59999999999999999999999999999999999999988776544
No 45
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.63 E-value=1e-07 Score=66.07 Aligned_cols=49 Identities=18% Similarity=0.363 Sum_probs=42.1
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.+.++.+ .|.|+|++||+++++..+||++++|++|++...|+++++...
T Consensus 142 ~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 142 ELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 3445444 489999999999999999999999999999999999988654
No 46
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.63 E-value=3.4e-07 Score=62.85 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=45.7
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEEEe
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKF 67 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 67 (97)
.+..+.+ +.|||++||+++++..+||++++|++|++...|+.+++..... ...+.+.+
T Consensus 175 ~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~-~~~~~i~~ 232 (301)
T TIGR03522 175 VIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAANK-KQVIEVEF 232 (301)
T ss_pred HHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHhcC-CceEEEEe
Confidence 3444544 6899999999999999999999999999999999999876533 23344444
No 47
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=1.1e-07 Score=62.93 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=41.4
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.++|.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 179 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 179 TIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 344555568999999999999999999999999999999999988753
No 48
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=1.2e-07 Score=65.65 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=41.5
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+..+.++|.|+|++||+++++..+||++++|++|+++..|++++++.
T Consensus 218 ~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 218 LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 344454568999999999999999999999999999999999998754
No 49
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.61 E-value=8.4e-08 Score=68.41 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=49.4
Q ss_pred hhhhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCce
Q psy18239 5 RCQHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGY 61 (97)
Q Consensus 5 ~~~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 61 (97)
+..+++++.++ |++++++|||+..+.+++||+++|.+|++++.|+.+.++..+...|
T Consensus 196 IL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpY 253 (534)
T COG4172 196 ILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPY 253 (534)
T ss_pred HHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCChH
Confidence 44567776654 9999999999999999999999999999999999999988766555
No 50
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.60 E-value=1.6e-07 Score=62.02 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=40.9
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.+..+.|.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 185 ~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 185 LIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 344544468899999999999999999999999999999998887643
No 51
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=1.5e-07 Score=64.23 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=42.0
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
..+.++.+ .|.|||++||+++++..+|||+++|.+|++...|++.++..
T Consensus 186 ~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 186 EMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 33555544 48999999999999999999999999999999999988754
No 52
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=1.8e-07 Score=63.81 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=41.5
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.+ .|.|+|++||+++++..+||++++|++|++.+.|+++++..
T Consensus 186 ~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 186 KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 3445544 48999999999999999999999999999999999998765
No 53
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.59 E-value=1.3e-07 Score=66.33 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=43.6
Q ss_pred hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
.+.++.++ +.|+|++||+++++..+||++++|++|++...|+++++...+.
T Consensus 170 ~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 170 YLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred HHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 34454443 8999999999999999999999999999999999999877654
No 54
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=1.7e-07 Score=66.35 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=40.8
Q ss_pred cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 14 QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
+.|.|+|++|||.+++..+||++++|++|++...|++++++..+.
T Consensus 198 ~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 198 RVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred hcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 348999999999999999999999999999999999999876543
No 55
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.58 E-value=1.7e-07 Score=66.08 Aligned_cols=49 Identities=14% Similarity=0.134 Sum_probs=41.9
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.+.++.+ .+.|+|++||+++++..+||++++|++|++...|+++++...
T Consensus 175 ~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 175 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 3445444 489999999999999999999999999999999999987654
No 56
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.57 E-value=2.3e-07 Score=62.14 Aligned_cols=48 Identities=6% Similarity=0.099 Sum_probs=41.4
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.+.|.++|++||+++++..+||++++|++|+++..|+++++..
T Consensus 194 ~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 241 (257)
T PRK10619 194 IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241 (257)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhh
Confidence 344555568999999999999999999999999999999999888654
No 57
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.57 E-value=1.8e-07 Score=60.63 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=41.6
Q ss_pred hhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNS-QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
..++. +++.|++|+||+++++.+++++++++++|++.+.|+.+++..
T Consensus 172 v~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 172 VSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred HHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 44454 458999999999999999999999999999999999999764
No 58
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=2.5e-07 Score=63.11 Aligned_cols=47 Identities=11% Similarity=0.141 Sum_probs=41.0
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.++.+.|.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 188 l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 188 FKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 44454568999999999999999999999999999999999888754
No 59
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=2.5e-07 Score=62.74 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=39.3
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
.+.++.++|.|+|++||+++++..+||++++|++|++...|+++.+
T Consensus 180 ~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 180 ILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 3444544589999999999999999999999999999999998654
No 60
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=2.6e-07 Score=62.59 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=42.1
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
..+.++.++|.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 178 ~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 178 KLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 3345555458999999999999999999999999999999999998754
No 61
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.55 E-value=2.2e-07 Score=61.36 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=41.3
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
..+.++.+ .+.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 177 ~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 177 DLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 33455544 48999999999999999999999999999999999887653
No 62
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=2.7e-07 Score=64.46 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=42.6
Q ss_pred hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
...+.++.+ .|.|+|++||+++++..+||++++|++|++...|++.++...
T Consensus 180 ~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 180 LELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 344555544 489999999999999999999999999999999998887543
No 63
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.55 E-value=3.1e-07 Score=60.84 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=40.9
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.+..+++.|+|++||+++++..+||++++|++|++...|++.++.+
T Consensus 178 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 178 VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 344444558999999999999999999999999999999998887644
No 64
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=2.5e-07 Score=62.98 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=41.5
Q ss_pred hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.++ |.|+|++||+++++..+||++++|++|++.+.|+++++..
T Consensus 183 ~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 183 LLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 34455443 8999999999999999999999999999999999988765
No 65
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.55 E-value=2e-07 Score=69.55 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=43.2
Q ss_pred hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
...+.++.+ .|.|+|++|||++.+..+||++++|.+|+++..|+++++...
T Consensus 503 ~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~ 554 (623)
T PRK10261 503 INLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFEN 554 (623)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence 344555554 489999999999999999999999999999999999988654
No 66
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=3.1e-07 Score=62.62 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=41.9
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.+.++.+ .|.|+|++||+++++..+||++++|++|++...|++.++...
T Consensus 187 ~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 187 LLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 3455543 489999999999999999999999999999999999887653
No 67
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.54 E-value=3.1e-07 Score=61.18 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=41.2
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.+++.++|++||+++++..+||++++|++|++...|+++++..
T Consensus 186 ~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 186 TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 344555558999999999999999999999999999999999888654
No 68
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.54 E-value=1.3e-07 Score=62.44 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=50.3
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH--hhcCceEEEEEeCC
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN--KFAVGYQLQIKFPP 69 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~--~~~~~~~~~~~~~~ 69 (97)
...+++..+|..++.+-||++.++.||||+++|.+|++++.|+|++..+ .....|...+.+..
T Consensus 182 ~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~vyg~~~~V~~ 246 (259)
T COG4559 182 RLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVYGADIRVGR 246 (259)
T ss_pred HHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHHHhCCceeeee
Confidence 3456677788999999999999999999999999999999999999764 23344444444443
No 69
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=3.1e-07 Score=62.33 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=41.6
Q ss_pred hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.++ |.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 179 ~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 179 FLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 34555444 8999999999999999999999999999999999998864
No 70
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.52 E-value=3.8e-07 Score=61.20 Aligned_cols=47 Identities=6% Similarity=0.128 Sum_probs=40.2
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.++.+ +.|+|++||+++++..+||++++|++|++...|+++++...
T Consensus 197 l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 197 IMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred HHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 444433 68999999999999999999999999999999999887543
No 71
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.52 E-value=3.2e-07 Score=61.30 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=40.3
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
.+.++.+++.|+|++||+++++..+||++++|++|++...|+.+++.
T Consensus 175 ~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 175 LLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 34455556899999999999999999999999999999999887763
No 72
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.52 E-value=3.8e-07 Score=59.67 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=39.9
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
.+.+..+.+.|+|++||+++++..+||++++|++|++...|+++++.
T Consensus 174 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 174 AIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 34445446789999999999999999999999999999998887654
No 73
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.51 E-value=3.9e-07 Score=63.90 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=43.2
Q ss_pred hhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 7 QHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 7 ~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
..+.++.++ +.|+|++||+++++..+||++++|++|++...|+++++...+
T Consensus 172 ~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 172 PYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 345555444 899999999999999999999999999999999999887654
No 74
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=4.2e-07 Score=61.38 Aligned_cols=49 Identities=8% Similarity=0.015 Sum_probs=41.6
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
..+.++.++|.|+|++||+++++..+||++++|.+|++...|+++++..
T Consensus 177 ~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 177 AIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 3344554458899999999999999999999999999999999888754
No 75
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.51 E-value=4.1e-07 Score=59.88 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=40.3
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
.+.+..+.+.|+|++||+++++..+||++++|++|++...|+.+++.
T Consensus 175 ~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 175 IIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 34455556889999999999999999999999999999999887764
No 76
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.51 E-value=2.1e-07 Score=62.62 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=44.2
Q ss_pred hhhhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 4 DRCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 4 ~~~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
....++.+++++|+||+|+|||++.+..++|+++.|++ ++.+.|++++..+.
T Consensus 177 ~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~~~ 228 (254)
T COG1121 177 EIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVLTE 228 (254)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhccCH
Confidence 34456777777799999999999999999999999975 78999999987653
No 77
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=4.5e-07 Score=59.97 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=40.5
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
..+.++.+ .|.|+|++||+++++..+||++++|++|++...|+++++.
T Consensus 185 ~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 185 DLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 33455544 4899999999999999999999999999999999888763
No 78
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=3.6e-07 Score=60.56 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=40.8
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.+..+ .|.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 178 ~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 178 WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 3445544 37899999999999999999999999999999999888753
No 79
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=4.4e-07 Score=59.86 Aligned_cols=48 Identities=23% Similarity=0.352 Sum_probs=40.5
Q ss_pred hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.+..++ |.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 182 ~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 182 LLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 34455443 8999999999999999999999999999999998877643
No 80
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.50 E-value=3.9e-07 Score=61.02 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=40.4
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
.+.++.+++.|+|++||+++++..+||++++|++|++...|+.+++.
T Consensus 179 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 179 LVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 34455555789999999999999999999999999999999888763
No 81
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=3.6e-07 Score=65.14 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=41.6
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.+.++.+ .++|+|++||+++++..+||++++|++|++...|+++++...
T Consensus 206 ~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 206 ELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred HHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 3444443 489999999999999999999999999999999999887654
No 82
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=5e-07 Score=61.26 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=41.2
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.+++.|||++||+++++..+||++++|++|++...|+++++..
T Consensus 187 ~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 187 LFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 344454458999999999999999999999999999999999888754
No 83
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.48 E-value=5.1e-07 Score=59.56 Aligned_cols=48 Identities=23% Similarity=0.210 Sum_probs=41.1
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.+ .+.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 167 ~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 167 LLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 (230)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 3445544 47899999999999999999999999999999999988754
No 84
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=5.6e-07 Score=60.00 Aligned_cols=49 Identities=4% Similarity=0.081 Sum_probs=41.4
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
..+.++. ++.|+|++||+++++..+||++++|++|++...|+++++.+.
T Consensus 187 ~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~ 235 (250)
T PRK14245 187 ELIHELK-KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTN 235 (250)
T ss_pred HHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 3344443 368999999999999999999999999999999999988653
No 85
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=5.1e-07 Score=61.03 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=40.4
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.++.+ .|.|+|++||+++++..+||++++|++|++...|+++++.+
T Consensus 203 l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 203 LLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 444443 47999999999999999999999999999999999888754
No 86
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.47 E-value=5.3e-07 Score=60.21 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=40.9
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.+..+ .|.|+|++||+++++..+||++++|++|++...|+.+++..
T Consensus 188 ~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T TIGR03005 188 VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR 236 (252)
T ss_pred HHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 3445444 48999999999999999999999999999999999888754
No 87
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.47 E-value=5.9e-07 Score=59.56 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=41.1
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+..+.++|.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 179 ~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 179 IIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 344555568999999999999999999999999999999999887643
No 88
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.47 E-value=3.9e-07 Score=66.67 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=41.8
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
..+.++.+ .|.|||++||+++++..+||++++|++|++...|+++++.+
T Consensus 466 ~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 515 (529)
T PRK15134 466 ALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFA 515 (529)
T ss_pred HHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhc
Confidence 34555544 38999999999999999999999999999999999988754
No 89
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.46 E-value=2.4e-07 Score=62.61 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=48.8
Q ss_pred hhhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCce
Q psy18239 5 RCQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGY 61 (97)
Q Consensus 5 ~~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 61 (97)
...++.++++ .|.+.+++|||+..+..+|||+++|..|+++..|+.++++..+...|
T Consensus 148 IlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpY 205 (268)
T COG4608 148 ILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPY 205 (268)
T ss_pred HHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHH
Confidence 3445666665 49999999999999999999999999999999999999988766555
No 90
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=5.9e-07 Score=58.81 Aligned_cols=45 Identities=27% Similarity=0.396 Sum_probs=38.2
Q ss_pred hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHH
Q psy18239 8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQH 52 (97)
Q Consensus 8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 52 (97)
.+.++.++ +.++|++||+++++..+||++++|++|++...+++++
T Consensus 173 ~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 173 YIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 34454444 8899999999999999999999999999998887765
No 91
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=6.7e-07 Score=59.72 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=41.1
Q ss_pred hhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 7 QHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 7 ~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
..+..+.++ |.|+|++||+++++..+||++++|++|++...|+++++.+
T Consensus 194 ~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 194 ELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred HHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHhh
Confidence 334455444 8999999999999999999999999999999998887643
No 92
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.46 E-value=3.9e-07 Score=59.90 Aligned_cols=45 Identities=16% Similarity=0.321 Sum_probs=37.9
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQH 52 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 52 (97)
..+.+..++ .|+|++||+++++..+||++++|++|++...|++++
T Consensus 182 ~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 182 ELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 345555555 899999999999999999999999999998887654
No 93
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.46 E-value=6.3e-07 Score=59.35 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=40.3
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhh-cCeEEEEeCCEEeEecChHHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEAL-CTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
..+.+..++|.|+|++||+++.+..+ ||++++|++|++...|+++++.
T Consensus 185 ~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 185 EGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred HHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 44555555689999999999999998 8999999999999999887543
No 94
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=7.7e-07 Score=59.48 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=40.9
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.+.++. ++.|+|++||+++++..+||++++|++|++...|++.++...
T Consensus 192 ~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 239 (254)
T PRK14273 192 LIINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239 (254)
T ss_pred HHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 344443 368999999999999999999999999999999999888654
No 95
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=8e-07 Score=58.68 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=40.9
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.+..+ .|.|+|++||+++++..+||++++|.+|++...|+++++..
T Consensus 171 ~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 171 LVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 3445443 47899999999999999999999999999999999888754
No 96
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=6e-07 Score=60.09 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=40.1
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
.+.++.+++.|+|++||+++++..+||++++|++|++...|+.+++.
T Consensus 180 ~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 180 LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 34455455899999999999999999999999999999998887763
No 97
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.45 E-value=7e-07 Score=59.97 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=40.5
Q ss_pred hhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNS-QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++. +.+.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 182 ~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 182 LARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred HHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 344544 458899999999999999999999999999999998877643
No 98
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.44 E-value=6.9e-07 Score=60.33 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=40.9
Q ss_pred hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.++ |.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 185 ~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 185 LISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 34455443 7999999999999999999999999999999999888754
No 99
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.44 E-value=8.5e-07 Score=59.11 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=40.2
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.+..+ +.|+|++||+++++..+||++++|++|++...|++.++.+.
T Consensus 191 l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T PRK14239 191 LLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237 (252)
T ss_pred HHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 444433 58999999999999999999999999999999999887653
No 100
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.44 E-value=6e-07 Score=59.51 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=39.2
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
.+.++.+ .+.|+|++||+++++..+||++++|++|++...|+++++
T Consensus 187 ~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 187 YLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 3445443 478999999999999999999999999999999988775
No 101
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.44 E-value=7.3e-07 Score=60.07 Aligned_cols=48 Identities=8% Similarity=0.187 Sum_probs=40.8
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
+.+.++.+ .+.|+|++||+++++..+||++++|++|++...|+++++.
T Consensus 184 ~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 184 ELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 34555554 4889999999999999999999999999999999988764
No 102
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.44 E-value=8.6e-07 Score=58.77 Aligned_cols=47 Identities=13% Similarity=0.197 Sum_probs=39.8
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
+.+..+.+ +.|+|++||+++++..+||++++|++|++...|+++++.
T Consensus 184 ~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 184 ELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 33444444 689999999999999999999999999999999888764
No 103
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=8e-07 Score=59.07 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=40.6
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+..+.+ .|.|+|++||+++++..+||++++|++|++...|++.++..
T Consensus 174 l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 174 IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred HHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 444444 48999999999999999999999999999999999888754
No 104
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.43 E-value=2.1e-07 Score=61.48 Aligned_cols=51 Identities=8% Similarity=0.080 Sum_probs=44.0
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
++..+++ +.-||++|||+|..|++++|+++++..|++++.|+.+.++.++.
T Consensus 190 eLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~ 240 (253)
T COG1117 190 ELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPK 240 (253)
T ss_pred HHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCcc
Confidence 3444454 45899999999999999999999999999999999999987654
No 105
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=9.2e-07 Score=59.30 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=40.4
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.++.+ +.|+|++||+++.+..+||++++|++|++...|+++++...
T Consensus 198 l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 244 (259)
T PRK14274 198 ILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244 (259)
T ss_pred HHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhC
Confidence 444443 68999999999999999999999999999999999987653
No 106
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=8.4e-07 Score=60.48 Aligned_cols=47 Identities=11% Similarity=0.163 Sum_probs=40.3
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.++.+ .+.|+|++||+++++..+||++++|++|++...|++.++..
T Consensus 193 l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 193 FERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 444443 48999999999999999999999999999999999888754
No 107
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.43 E-value=8.3e-07 Score=58.42 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=39.7
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
.+.+..+ .+.|+|++||+++++..+||+++++++|++...|+.+++
T Consensus 173 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 173 VIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 3445544 379999999999999999999999999999999988776
No 108
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.42 E-value=1.2e-06 Score=59.25 Aligned_cols=50 Identities=16% Similarity=0.295 Sum_probs=42.9
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
.+.+..+.+.|+|++||++.++..+||++++|++|++...|+.+++...+
T Consensus 185 ~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 234 (264)
T PRK13546 185 KIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKY 234 (264)
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHh
Confidence 34445556899999999999999999999999999999999998876654
No 109
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.42 E-value=9.2e-07 Score=58.73 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=40.5
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.+..+ .|.++|++||+++++..+||++++|++|++...|+++++..
T Consensus 177 ~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 177 EFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 3455544 38999999999999999999999999999999998887643
No 110
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=1e-06 Score=61.39 Aligned_cols=49 Identities=8% Similarity=0.055 Sum_probs=41.8
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
+..+.+ +.|+|++||+++.+..+||++++|++|++...|++.++++.+.
T Consensus 268 i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~ 316 (329)
T PRK14257 268 ILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPK 316 (329)
T ss_pred HHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCC
Confidence 334433 5899999999999999999999999999999999999876433
No 111
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=1.2e-06 Score=58.45 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=39.8
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.++.+ +.|+|++||+++++..+||++++|++|++...|+++++.+
T Consensus 192 l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (253)
T PRK14267 192 LFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE 237 (253)
T ss_pred HHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 444433 5899999999999999999999999999999999988754
No 112
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=9.8e-07 Score=58.91 Aligned_cols=48 Identities=8% Similarity=0.084 Sum_probs=40.7
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.+.++.+ +.|+|++||+++++..+||++++|++|++...|+++++...
T Consensus 190 ~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14256 190 LIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTT 237 (252)
T ss_pred HHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 3444444 58999999999999999999999999999999999887653
No 113
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.41 E-value=7.9e-07 Score=59.90 Aligned_cols=48 Identities=25% Similarity=0.296 Sum_probs=40.9
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.+ .|.|+|++||+++.+..+||++++|++|++...|+++++..
T Consensus 192 ~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 192 LLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 3444444 38999999999999999999999999999999999988753
No 114
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.41 E-value=8.9e-07 Score=59.35 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=40.3
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+....+ .|.|+|++||+++.+..+||++++|++|++...|+++++..
T Consensus 194 l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 241 (258)
T PRK11701 194 LRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLD 241 (258)
T ss_pred HHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 444444 38999999999999999999999999999999999888754
No 115
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=1.1e-06 Score=58.56 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=40.3
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.+.. ++.|+|++||+++++..+||++++|++|++...|+++++.+.
T Consensus 192 l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (251)
T PRK14244 192 IQELK-KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238 (251)
T ss_pred HHHHh-cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 44443 379999999999999999999999999999999998887653
No 116
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.40 E-value=4.5e-07 Score=60.52 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=44.1
Q ss_pred hhhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 5 RCQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 5 ~~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
-+..++++++ +|.|+|++.|+++.+.+||||++-|.+|+++++|+++++..
T Consensus 186 Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 186 VMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred HHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 3455666654 59999999999999999999999999999999999988643
No 117
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.40 E-value=5e-07 Score=67.46 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=42.4
Q ss_pred hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.+.+ .|.|+|++||+++++..+||++++|++|+++..|++.++..
T Consensus 208 ~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~ 258 (623)
T PRK10261 208 LQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFH 258 (623)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc
Confidence 344556554 48999999999999999999999999999999999888754
No 118
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.40 E-value=3.2e-07 Score=60.13 Aligned_cols=51 Identities=10% Similarity=0.136 Sum_probs=45.1
Q ss_pred hhhhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 5 RCQHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 5 ~~~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.++.++.+.++ |+|+++|-||+++|..|+|+++-|.+|+++..|+++++.+
T Consensus 174 iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 174 IMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred HHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 45666666654 9999999999999999999999999999999999999865
No 119
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.40 E-value=5.3e-07 Score=62.98 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=45.7
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEEE
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIK 66 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 66 (97)
.+.|+|.+|||-.+|..++||+.+|++|++...|+|.+++.++.+.+.-.+.
T Consensus 183 l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~fVA~Fi 234 (338)
T COG3839 183 LGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFI 234 (338)
T ss_pred cCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchhhhhhc
Confidence 4899999999999999999999999999999999999999887765544433
No 120
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.40 E-value=1e-06 Score=58.76 Aligned_cols=46 Identities=9% Similarity=0.147 Sum_probs=39.5
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.++.+ +.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 192 l~~~~~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14242 192 IHELKA-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFT 237 (253)
T ss_pred HHHHhc-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 444433 6899999999999999999999999999999999888754
No 121
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.40 E-value=8.5e-07 Score=59.83 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=41.4
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.+.++.+ .|.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 190 ~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 239 (267)
T PRK15112 190 NLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239 (267)
T ss_pred HHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence 34555544 48999999999999999999999999999999998888754
No 122
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.40 E-value=7.9e-07 Score=58.32 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=38.6
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQH 52 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 52 (97)
..+.++.+++.++|++||+++++..+||++++|.+|++...|++.+
T Consensus 165 ~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 165 ELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 3344555558899999999999999999999999999999887653
No 123
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=1.2e-06 Score=59.01 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=40.5
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.+.++.+ +.|+|++||+++++..+||++++|++|++...|+++++.+.
T Consensus 206 ~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 253 (268)
T PRK14248 206 LITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253 (268)
T ss_pred HHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 3444433 58999999999999999999999999999999998887653
No 124
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=1.1e-06 Score=59.78 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=40.6
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
..+.++.+ .|.|+|++||+++++. +||++++|++|++...|++.++...
T Consensus 181 ~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 181 KTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHcC
Confidence 34555554 4899999999999985 7999999999999999999887543
No 125
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=1.1e-06 Score=59.11 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=41.1
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeC-----CEEeEecChHHHHHh
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVN-----GRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~-----G~i~~~g~~~~l~~~ 56 (97)
+.++.. .+.|+|++||+++++..+||++++|++ |+++..|+++++...
T Consensus 193 l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~ 246 (261)
T PRK14258 193 IQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNS 246 (261)
T ss_pred HHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHhC
Confidence 444433 479999999999999999999999999 999999999998653
No 126
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.39 E-value=1e-06 Score=57.98 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=39.4
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.+..+++.|+|++||+++++..+||+++++ +|++...|+.+++..
T Consensus 155 ~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 155 LFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 34445456899999999999999999999999 799999998887643
No 127
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.39 E-value=1.1e-06 Score=58.74 Aligned_cols=48 Identities=25% Similarity=0.246 Sum_probs=41.0
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.+ .|.|+|++||+++++..+||++++|++|++...|+++++.+
T Consensus 182 ~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 182 LLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 3444444 48999999999999999999999999999999999988754
No 128
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=1.3e-06 Score=58.22 Aligned_cols=46 Identities=9% Similarity=0.100 Sum_probs=39.7
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.+..+ +.|+|++||+++++..+||++++|++|++...|+++++.+
T Consensus 189 l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14247 189 FLELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234 (250)
T ss_pred HHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHc
Confidence 444433 7899999999999999999999999999999999988754
No 129
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=1.2e-06 Score=58.99 Aligned_cols=48 Identities=15% Similarity=0.208 Sum_probs=40.4
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
..+.++.+ .+.|+|++||+++++..+||++++|++|++...|+.+++.
T Consensus 188 ~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 188 ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 34555544 3899999999999999999999999999999999887764
No 130
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.38 E-value=1.5e-06 Score=57.85 Aligned_cols=46 Identities=11% Similarity=0.224 Sum_probs=39.6
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.++.+ +.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 187 l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 187 IQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 444444 4899999999999999999999999999999999888754
No 131
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=1.3e-06 Score=59.21 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=39.9
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.++|.|+|++||+++++. .||++++|++|++...|+++++..
T Consensus 178 ~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 178 RIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHhc
Confidence 34455556899999999999985 599999999999999999988754
No 132
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=1.7e-06 Score=57.69 Aligned_cols=46 Identities=9% Similarity=0.120 Sum_probs=39.8
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+++..+ +.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 191 l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14272 191 MTDLKK-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236 (252)
T ss_pred HHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 444433 6899999999999999999999999999999999988754
No 133
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.37 E-value=1.4e-06 Score=58.91 Aligned_cols=47 Identities=9% Similarity=0.163 Sum_probs=40.2
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.+..+ +.|+|++||+++++..+||++++|++|++...|++.++.+.
T Consensus 210 l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 256 (271)
T PRK14238 210 VQELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN 256 (271)
T ss_pred HHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 444444 68999999999999999999999999999999998887543
No 134
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.37 E-value=1.4e-06 Score=57.72 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=41.4
Q ss_pred hhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 7 QHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 7 ~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.+.+..++ ++|+|++||+++++..+||++++|++|++...|+.+++.+
T Consensus 171 ~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 171 SWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 334444444 7999999999999999999999999999999999888754
No 135
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.37 E-value=1.5e-06 Score=57.98 Aligned_cols=48 Identities=6% Similarity=0.052 Sum_probs=40.6
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.+.+..+ +.++|++||+++++..+||++++|++|++...|+++++...
T Consensus 189 ~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14270 189 LMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLE 236 (251)
T ss_pred HHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcC
Confidence 3444444 58999999999999999999999999999999999887543
No 136
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.36 E-value=1.7e-06 Score=63.63 Aligned_cols=50 Identities=12% Similarity=0.282 Sum_probs=42.5
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
.+.++.++|.|+|++||+++++..+||++++|.+|++...|+++++...+
T Consensus 185 lL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 185 KMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 34445556899999999999999999999999999999999998876543
No 137
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.36 E-value=1.9e-06 Score=57.02 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=39.2
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.+.+.. +|.++|++||+++++. +||++++|++|++...++.+++...
T Consensus 181 ~l~~~~-~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 181 ALDRAM-KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred HHHHhc-CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHHhhc
Confidence 344444 5899999999999997 7999999999999999988776543
No 138
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=1.9e-06 Score=57.43 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=39.8
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.+..+ +.|+|++||+++++..+||++++|++|++...|+..++..
T Consensus 185 l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 185 LKELSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 334433 7899999999999999999999999999999999888754
No 139
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.36 E-value=1.2e-06 Score=59.47 Aligned_cols=47 Identities=11% Similarity=0.166 Sum_probs=40.0
Q ss_pred hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
.+.++.++ +.|+|++||+++++..+||++++|.+|++...|+++++.
T Consensus 196 ~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 196 TVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHHc
Confidence 34454444 899999999999999999999999999999999887763
No 140
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.36 E-value=1.8e-06 Score=57.55 Aligned_cols=47 Identities=11% Similarity=0.209 Sum_probs=40.1
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.+.. ++.|+|++||+++.+..+||++++|++|++...|+++++...
T Consensus 189 l~~~~-~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 235 (250)
T PRK14240 189 IQELK-KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235 (250)
T ss_pred HHHHh-cCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 44443 368999999999999999999999999999999998887543
No 141
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.36 E-value=1.5e-06 Score=63.49 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=40.9
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.+ .|.|+|++||+++++..+||++++|.+|++...|+++++..
T Consensus 469 ~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 469 SILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 3445544 48999999999999999999999999999999999887754
No 142
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=7.2e-07 Score=65.00 Aligned_cols=47 Identities=23% Similarity=0.176 Sum_probs=39.8
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
..+.++.++|.|||++||+++++..+||++++|.+|++...++++++
T Consensus 446 ~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 446 KLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 34455555689999999999999999999999999999988877654
No 143
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.36 E-value=1.5e-06 Score=58.03 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=40.1
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.+..+ .+.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 191 l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~ 238 (253)
T TIGR02323 191 LRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238 (253)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhc
Confidence 444433 48999999999999999999999999999999999887754
No 144
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.35 E-value=1.9e-06 Score=57.39 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=39.9
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.+ +.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 187 ~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 187 LMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 3444444 5899999999999999999999999999999999887643
No 145
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=1.8e-06 Score=57.25 Aligned_cols=45 Identities=20% Similarity=0.238 Sum_probs=38.9
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
+.++.+++.|+|++||+++++..+||++++|.+|++...|+++++
T Consensus 184 l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 184 IRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 444445689999999999999999999999999999999887764
No 146
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.35 E-value=1.3e-06 Score=63.93 Aligned_cols=48 Identities=25% Similarity=0.216 Sum_probs=40.8
Q ss_pred hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.++ |.|+|++||+++.+..+||++++|++|++...|+++++..
T Consensus 198 ~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 246 (529)
T PRK15134 198 LLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFS 246 (529)
T ss_pred HHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHhh
Confidence 34555443 8999999999999999999999999999999998887643
No 147
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.35 E-value=1.6e-06 Score=58.24 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=39.5
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
.+..+.+ .|.|+|++||+++++..+||++++|++|++...|+++++
T Consensus 194 ~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 194 TLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 3445543 479999999999999999999999999999999998775
No 148
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.35 E-value=2e-06 Score=57.40 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=37.1
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 196 ~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14251 196 QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI 235 (251)
T ss_pred CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHh
Confidence 6899999999999999999999999999999999988754
No 149
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.34 E-value=2e-06 Score=57.71 Aligned_cols=47 Identities=11% Similarity=0.067 Sum_probs=40.0
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++. .+.|+|++||+++++..+||++++|++|++...|+.+++..
T Consensus 198 ~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 244 (260)
T PRK10744 198 LITELK-QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFT 244 (260)
T ss_pred HHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 344443 36899999999999999999999999999999999888754
No 150
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=2.3e-06 Score=57.05 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=39.6
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.+..+ +.|+|++||+++.+..+||++++|++|++...|+++++.+
T Consensus 189 l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 189 LEELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234 (250)
T ss_pred HHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 334433 6899999999999999999999999999999999988754
No 151
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.34 E-value=1.4e-06 Score=63.66 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=40.0
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
.+.++.++|.+||++||+++++..+||++++|++|++...|++.++
T Consensus 182 ~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 182 RIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 3455555689999999999999999999999999999999988765
No 152
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.33 E-value=2.3e-06 Score=56.72 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=40.1
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.++.. .+.|+|++||+++++..+||++++|++|++...|++.++.+
T Consensus 172 l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 172 LKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 444444 38999999999999999999999999999999998887654
No 153
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.33 E-value=7e-07 Score=57.96 Aligned_cols=50 Identities=4% Similarity=0.064 Sum_probs=45.3
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
.+++.++|+|.+++||.|.++...+++++++.+|.+-..|+|++++.++.
T Consensus 195 ~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~nP~ 244 (256)
T COG4598 195 MQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQ 244 (256)
T ss_pred HHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcCCC
Confidence 35567789999999999999999999999999999999999999987654
No 154
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=2.4e-06 Score=57.00 Aligned_cols=42 Identities=7% Similarity=0.188 Sum_probs=38.5
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
++.|+|++||+++++..+||++++|++|++...|+++++...
T Consensus 195 ~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14249 195 QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236 (251)
T ss_pred cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhC
Confidence 478999999999999999999999999999999999887654
No 155
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.32 E-value=1.8e-06 Score=62.68 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=40.8
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
..+.++.++|.|+|++||+++.+..+||++++|++|++...|+++++.
T Consensus 176 ~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 176 ELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 334555556899999999999999999999999999999999887754
No 156
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.32 E-value=1.7e-06 Score=57.10 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=40.0
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.+..+ .|.|+|++||+++++..+||++++|++|++...|+..++..
T Consensus 173 l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 173 LKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 444444 38999999999999999999999999999999998877654
No 157
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=2.5e-06 Score=57.43 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=39.7
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.++.+ +.|+|++||+++++..+||++++|++|++...|+..++..
T Consensus 204 l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 249 (265)
T PRK14252 204 ISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFI 249 (265)
T ss_pred HHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 444433 5899999999999999999999999999999999988764
No 158
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.31 E-value=1.1e-06 Score=64.13 Aligned_cols=47 Identities=26% Similarity=0.249 Sum_probs=39.9
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
..+.++.++|.|+|++|||++++..+||++++|.+|++...++++++
T Consensus 444 ~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 444 QLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 34555555689999999999999999999999999999998877654
No 159
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.31 E-value=2.8e-06 Score=57.34 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=39.6
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.++.+ +.|+|++||+++.+..+||++++|++|++...|+++++..
T Consensus 206 L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14235 206 IDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFT 251 (267)
T ss_pred HHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 444443 6899999999999999999999999999999999888754
No 160
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.31 E-value=2.2e-06 Score=58.02 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=39.9
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.+ +.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 210 ~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 256 (272)
T PRK14236 210 LITELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFT 256 (272)
T ss_pred HHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhc
Confidence 3444444 6899999999999999999999999999999999888754
No 161
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.30 E-value=1.6e-06 Score=56.32 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=34.3
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
.+.+..+++.++|++||+++++..+||++++|++|++...|
T Consensus 168 ~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 168 LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 34444446899999999999999999999999999987653
No 162
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.30 E-value=2.8e-06 Score=57.32 Aligned_cols=46 Identities=7% Similarity=-0.001 Sum_probs=39.8
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.++. ++.++|++||+++++..+||++++|++|++...|++.++..
T Consensus 206 l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14237 206 MFELK-KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFT 251 (267)
T ss_pred HHHHh-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 44443 36899999999999999999999999999999999988754
No 163
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=3.1e-06 Score=57.71 Aligned_cols=46 Identities=7% Similarity=0.039 Sum_probs=39.6
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.+..+ +.++|++||+++++..+||++++|++|++...|++.++.+
T Consensus 225 L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~ 270 (286)
T PRK14275 225 IQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFT 270 (286)
T ss_pred HHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 444433 5899999999999999999999999999999999888755
No 164
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.30 E-value=1.4e-06 Score=63.37 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=40.0
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
..+.++.+.|.|+|++|||++++..+||++++|.+|++...|++.+.
T Consensus 437 ~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 437 NVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 34455566689999999999999999999999999999998877653
No 165
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.30 E-value=1.8e-06 Score=63.00 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=40.1
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
..+.++.++|.|+|++||+++++..+||++++|++|++...|+++++
T Consensus 186 ~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 186 LIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 34455555689999999999999999999999999999998887764
No 166
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=3.1e-06 Score=57.50 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=40.3
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.+ +.|+|++||+++++..+||++++|++|++...|+++++.+
T Consensus 205 ~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 205 FIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 3444444 4899999999999999999999999999999999988755
No 167
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=2.1e-06 Score=58.33 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=40.1
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.++.+ .|.|+|++||+++++.. ||++++|++|++...|+++++...
T Consensus 187 l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 187 IKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhcC
Confidence 444544 48999999999999986 999999999999999999988654
No 168
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=2.4e-06 Score=58.16 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=39.5
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.+ .|.|+|++||+++++. +||++++|.+|++...|+++++..
T Consensus 185 ~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 185 LIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence 3445544 4899999999999985 799999999999999999988754
No 169
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=2.9e-06 Score=56.63 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=40.1
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.++.+ +.|+|++||+++++..+||++++|++|++...|++.++...
T Consensus 191 l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14255 191 LLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLN 237 (252)
T ss_pred HHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 444443 48999999999999999999999999999999999887653
No 170
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.29 E-value=3e-06 Score=57.67 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=37.3
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.++|+|++||+++.+.. ||++++|++|++...|+++++...
T Consensus 186 ~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~~ 226 (275)
T cd03289 186 ADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLNE 226 (275)
T ss_pred CCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhhC
Confidence 47999999999998875 999999999999999999998763
No 171
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.27 E-value=2.3e-06 Score=55.82 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=34.3
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
.+.+..+++.|+|++||+++++..+||++++|++|++...|
T Consensus 178 ~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 178 FIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 34455455899999999999999999999999999987643
No 172
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.27 E-value=2.6e-06 Score=55.92 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=45.7
Q ss_pred hhhh-hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 5 RCQH-SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 5 ~~~~-~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
+|+. ...+++.|..|+++-||..+...+|||.+++.+|++.+.|+++++.++.
T Consensus 177 dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 177 DIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred HHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 4444 3446667999999999999999999999999999999999999987654
No 173
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=3.6e-06 Score=56.21 Aligned_cols=46 Identities=7% Similarity=0.071 Sum_probs=39.5
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+..+.+ +.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus 192 l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14261 192 IEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237 (253)
T ss_pred HHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence 334433 5899999999999999999999999999999999988754
No 174
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.27 E-value=3e-06 Score=55.84 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=39.3
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
+.++. ++.++|++||+++++.. ||++++|++|++...++++++....
T Consensus 181 l~~~~-~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (234)
T cd03251 181 LERLM-KNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLAQG 227 (234)
T ss_pred HHHhc-CCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHHHHcC
Confidence 44444 37899999999999976 9999999999999999988876543
No 175
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.26 E-value=2.3e-06 Score=55.64 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=34.5
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
.+.++.+ .+.|+|++||+++++..+||++++|++|++...|
T Consensus 172 ~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 172 ELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 3445544 4899999999999999999999999999988764
No 176
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.26 E-value=3.4e-06 Score=57.33 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=40.2
Q ss_pred hhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 7 QHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 7 ~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
..+.++.++ |.|+|++||+++++.. ||++++|.+|++.+.|+++++..
T Consensus 181 ~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 181 ETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHhc
Confidence 345555544 8999999999999975 99999999999999999888754
No 177
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.26 E-value=1.6e-06 Score=57.28 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=37.5
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
+.+..+ .|.|+|++||+++++..+||++++|++|++...|+...+
T Consensus 157 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 444444 488999999999999999999999999999988866544
No 178
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.26 E-value=2.3e-06 Score=55.67 Aligned_cols=42 Identities=29% Similarity=0.320 Sum_probs=34.4
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
..+.+..+ .|.++|++||+++++..+||++++|++|++...|
T Consensus 171 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 171 EELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 33445444 4899999999999999999999999999987654
No 179
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.26 E-value=3.5e-06 Score=55.06 Aligned_cols=44 Identities=41% Similarity=0.619 Sum_probs=37.2
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
+.+..+ +.|+|++||+++.+..+||++++|++|++...|+++++
T Consensus 176 l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 176 ILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 344444 48999999999999999999999999999998887653
No 180
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.26 E-value=1.7e-06 Score=63.03 Aligned_cols=47 Identities=17% Similarity=0.163 Sum_probs=39.6
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
..+.++.++|.++|++||+++++..+||++++|++|++...|+++++
T Consensus 184 ~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 184 DIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 34445555689999999999999999999999999999998877654
No 181
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.26 E-value=3.8e-06 Score=55.80 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=44.7
Q ss_pred hhhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 6 CQHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 6 ~~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
....++++++ |.||++|.++...+..++||.++|.+|+++..|+.+++...
T Consensus 176 ~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 176 FEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred HHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 3446667754 78999999999999999999999999999999999998764
No 182
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.26 E-value=2.8e-06 Score=61.71 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=39.6
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
.+.++.+.|.|+|++||+++++..+||++++|++|++...|+++++
T Consensus 176 ~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 176 IIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 3555555689999999999999999999999999999999887664
No 183
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.25 E-value=2.4e-06 Score=56.02 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=33.9
Q ss_pred hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
.+.+..++ |.|+|++||+++++..+||++++|++|++...|
T Consensus 187 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 187 LLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 34444444 799999999999999999999999999987543
No 184
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.25 E-value=3.4e-06 Score=56.21 Aligned_cols=44 Identities=18% Similarity=0.067 Sum_probs=37.7
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhh-cCeEEEEeCCEEeEecChHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEAL-CTRLAVMVNGRLSCLGSVQH 52 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 52 (97)
+.++.++|.|+|++||+++.+..+ ||++++|++|++...|+++.
T Consensus 194 l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 194 INKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred HHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence 444545589999999999999887 89999999999999998874
No 185
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.25 E-value=5.3e-06 Score=55.13 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=38.5
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhh-cCeEEEEeCCEEeEecChHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEAL-CTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 53 (97)
+..+.+.+.|+|++||+++.+..+ ||++++|++|++...|+++..
T Consensus 188 l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 188 VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 445555578999999999999887 899999999999999988754
No 186
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=4.7e-06 Score=56.03 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=40.1
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.++.+ +.|+|++||+++.+..+||++++|++|++...|+.+++...
T Consensus 196 l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~ 242 (257)
T PRK14246 196 ITELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242 (257)
T ss_pred HHHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 334433 58999999999999999999999999999999999887653
No 187
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.25 E-value=1.9e-06 Score=62.79 Aligned_cols=47 Identities=23% Similarity=0.190 Sum_probs=39.8
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
..+.++.++|.|+|++|||++++..+||++++|++|++...++++++
T Consensus 436 ~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 436 QLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 34555555689999999999999999999999999999988877664
No 188
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.25 E-value=4.6e-06 Score=55.19 Aligned_cols=48 Identities=27% Similarity=0.298 Sum_probs=40.1
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.+.++.+ +|.|+|++||+++++.. ||++++|++|++...++++++...
T Consensus 174 ~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 174 HVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred HHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHH
Confidence 3445543 48999999999999975 999999999999999998887654
No 189
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.24 E-value=3.1e-06 Score=57.15 Aligned_cols=48 Identities=19% Similarity=0.161 Sum_probs=40.0
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.+.++.+ .|.|+|++||+++++.. ||++++|++|++...|+++++...
T Consensus 184 ~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 184 LVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHhcC
Confidence 3445544 48999999999999986 999999999999999999887553
No 190
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.24 E-value=3.1e-06 Score=57.15 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=39.7
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
+.+..+ .+.|+|++||+++++..+||++++|++|++...|+++++.
T Consensus 194 l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 194 LKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred HHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 444444 3789999999999999999999999999999999888764
No 191
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.24 E-value=5.6e-06 Score=54.70 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=38.8
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.++. +|.|+|++||+++++. .||++++|.+|++...|+++++...
T Consensus 181 l~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 181 MHDIC-AGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred HHHhc-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHHhc
Confidence 44444 3789999999999986 5999999999999999998887654
No 192
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.24 E-value=2.2e-06 Score=55.58 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=32.6
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLS 45 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 45 (97)
..+.+..+++.++|++||+++++..+||++++|++|+++
T Consensus 167 ~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 167 ELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 334555456899999999999999999999999999863
No 193
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.24 E-value=5.1e-06 Score=55.36 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=40.3
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.+.. ++.|+|++||+++++..+||++++|++|++...|++.++...
T Consensus 189 l~~~~-~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14266 189 IHKLK-EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN 235 (250)
T ss_pred HHHHh-cCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhC
Confidence 44443 368999999999999999999999999999999999887544
No 194
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.24 E-value=2.1e-06 Score=62.53 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=38.5
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
+.++.+.|.|+|++||+++++..+||++++|++|++...|+++++
T Consensus 184 l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 184 IRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 445555588999999999999999999999999999988877654
No 195
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.23 E-value=2.9e-06 Score=55.33 Aligned_cols=41 Identities=29% Similarity=0.431 Sum_probs=34.0
Q ss_pred hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
.+.++.++ |.|+|++||+++++..+||++++|++|++...|
T Consensus 173 ~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 173 ELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 34444443 889999999999999999999999999987654
No 196
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=4.2e-06 Score=56.78 Aligned_cols=48 Identities=15% Similarity=0.112 Sum_probs=40.0
Q ss_pred hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.+.++.++ |.|+|++||+++++. .||++++|++|++...|+++++...
T Consensus 182 ~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 182 VIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHhcC
Confidence 34445444 899999999999997 5999999999999999999887653
No 197
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.23 E-value=3e-06 Score=55.07 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=33.0
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEe
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCL 47 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 47 (97)
+.++.+ .+.|+|++||+++++..+||++++|++|++...
T Consensus 171 l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 171 VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210 (211)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence 444443 489999999999999999999999999998754
No 198
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.23 E-value=4.1e-06 Score=52.73 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=33.5
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSC 46 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 46 (97)
..+++..+++.|+|++||+++++..+||++++|++|++.+
T Consensus 123 ~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 123 KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 3344555558999999999999999999999999999764
No 199
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.23 E-value=4.2e-06 Score=61.21 Aligned_cols=48 Identities=19% Similarity=0.116 Sum_probs=40.9
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.++.+ .|.|+|++||+++.+..+||++++|++|++...|++.++...
T Consensus 211 l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 211 LEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred HHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 455543 489999999999999999999999999999988988877654
No 200
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.23 E-value=5.6e-06 Score=56.15 Aligned_cols=48 Identities=6% Similarity=0.108 Sum_probs=40.5
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe---------CCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMV---------NGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~---------~G~i~~~g~~~~l~~~ 56 (97)
.+.+..+ +.|+|++||+++++..+||++++|+ +|+++..|++.++...
T Consensus 203 ~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~~~ 259 (274)
T PRK14265 203 LCLELKE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGS 259 (274)
T ss_pred HHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhC
Confidence 3444443 5899999999999999999999997 7999999999988653
No 201
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.22 E-value=5e-06 Score=56.02 Aligned_cols=47 Identities=9% Similarity=0.097 Sum_probs=40.1
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe---------CCEEeEecChHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMV---------NGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~---------~G~i~~~g~~~~l~~~ 56 (97)
+..+.+ +.|+|++||+++++..+||++++|+ +|+++..|+++++...
T Consensus 194 L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~~~ 249 (264)
T PRK14243 194 MHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNS 249 (264)
T ss_pred HHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhC
Confidence 444444 4799999999999999999999998 7999999999998653
No 202
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.22 E-value=3.1e-06 Score=55.19 Aligned_cols=42 Identities=12% Similarity=0.274 Sum_probs=35.4
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS 49 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 49 (97)
.+.+..+ .+.|+|++||+.+++..+||++++|++|++...|.
T Consensus 170 ~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 170 LVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 3444444 47999999999999999999999999999988775
No 203
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.21 E-value=4.7e-06 Score=56.37 Aligned_cols=47 Identities=11% Similarity=0.117 Sum_probs=38.7
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
..+.+..++|.|+|++||+++++..+||+++++ +|++...|+++++.
T Consensus 183 ~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 183 SLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 334555555899999999999999999999777 89999999888753
No 204
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=6.6e-06 Score=55.43 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=39.7
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe--------CCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMV--------NGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~--------~G~i~~~g~~~~l~~ 55 (97)
.+.++. ++.|+|++||+++++..+||++++|+ +|+++..|+.+++..
T Consensus 191 ~l~~~~-~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 191 LMVELK-KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQ 245 (261)
T ss_pred HHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHHh
Confidence 344443 36899999999999999999999996 899999999988765
No 205
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.21 E-value=3.9e-06 Score=54.54 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=34.0
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
.+.+..+++.|+|++||+++++..+||++++|.+|++...|
T Consensus 170 ~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 170 VIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 34444445789999999999999999999999999987643
No 206
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.20 E-value=4.3e-06 Score=55.09 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=34.1
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
.+.+..+++.|+|++||+++++..+||++++|++|++...|
T Consensus 184 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 184 RLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 34444445789999999999999999999999999987654
No 207
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.20 E-value=3.1e-06 Score=61.58 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=38.5
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQH 52 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 52 (97)
.+.++.++|.|+|++||+++++..+||++++|++|++...+++++
T Consensus 183 ~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 183 IIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence 345555568999999999999999999999999999988887654
No 208
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.20 E-value=6e-06 Score=55.42 Aligned_cols=46 Identities=7% Similarity=0.139 Sum_probs=39.1
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe-----CCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMV-----NGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~-----~G~i~~~g~~~~l~~ 55 (97)
+....+ +.|+|++||+++++..+||++++|. +|+++..|++.++..
T Consensus 193 l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~ 243 (259)
T PRK14260 193 IHSLRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFS 243 (259)
T ss_pred HHHHhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhc
Confidence 444443 5899999999999999999999997 499999999998754
No 209
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.20 E-value=6.3e-06 Score=55.71 Aligned_cols=48 Identities=8% Similarity=0.104 Sum_probs=39.3
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeC-----------CEEeEecChHHHHHh
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVN-----------GRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~-----------G~i~~~g~~~~l~~~ 56 (97)
.+.++.+ +.|+|++||+++++..+||++++|++ |+++..|++.++...
T Consensus 196 ~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 196 TMHELKK-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFNS 254 (269)
T ss_pred HHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHhC
Confidence 3444433 68999999999999999999999996 568899999888653
No 210
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.19 E-value=8.1e-06 Score=53.64 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=37.4
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.... ++.|+|++||+++++.. ||++++|++|++...++.+++..
T Consensus 182 l~~~~-~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 182 LEKLM-KGRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred HHHhc-CCCEEEEEecCHHHHhh-CCEEEEEeCCeEEEeCCHHHHHh
Confidence 44443 47899999999999865 99999999999999888877654
No 211
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.18 E-value=4.1e-06 Score=61.13 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=38.3
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS 49 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 49 (97)
...+.++++|.++|++||.++++.++|||+.+|++|+.+...+
T Consensus 186 ~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 186 DLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 3456677789999999999999999999999999999888776
No 212
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.17 E-value=9.7e-06 Score=52.52 Aligned_cols=44 Identities=16% Similarity=0.061 Sum_probs=36.5
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHh-hcCeEEEEeCCEEeEecChH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEA-LCTRLAVMVNGRLSCLGSVQ 51 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~-~~d~i~~l~~G~i~~~g~~~ 51 (97)
.+.+..+++.|+|++||+++.+.. +||++++|++|++...|+.+
T Consensus 146 ~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 146 VINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred HHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence 344554557899999999999887 79999999999999988444
No 213
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.17 E-value=3.5e-06 Score=55.66 Aligned_cols=40 Identities=5% Similarity=0.008 Sum_probs=33.0
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEec
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLG 48 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g 48 (97)
.+.++.+.|.|+|++||+++++ .+||++++| ++|++++.|
T Consensus 181 ~l~~~~~~g~tii~itH~~~~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 181 TLKRLRDLGNTVLVVEHDEDTI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHHHhCCCEEEEEEeCHHHH-HhCCEEEEeCCCccccCCEEEecC
Confidence 3445555689999999999987 589999999 999988765
No 214
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.17 E-value=8.3e-06 Score=54.68 Aligned_cols=46 Identities=9% Similarity=0.135 Sum_probs=38.9
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe------CCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMV------NGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~------~G~i~~~g~~~~l~~ 55 (97)
+.++. ++.|+|++||+++++..+||++++|+ +|++...|+++++..
T Consensus 191 l~~~~-~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~ 242 (258)
T PRK14241 191 INELK-QDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFS 242 (258)
T ss_pred HHHHh-cCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHh
Confidence 44443 35899999999999999999999997 799999999988754
No 215
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.17 E-value=4.3e-06 Score=57.41 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=43.5
Q ss_pred hhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 9 SRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 9 ~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
++.+.++ +..|+.|||.++++++++|++++|++|++.+.|+.+++...+
T Consensus 171 lERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 171 LERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred HHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 5556654 889999999999999999999999999999999999987754
No 216
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.16 E-value=3.7e-06 Score=61.18 Aligned_cols=44 Identities=20% Similarity=0.126 Sum_probs=37.2
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQ 51 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 51 (97)
.+..+.++|.|+|++|||++++..+||++++|.+|++....+..
T Consensus 445 ~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 445 LINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 44555556899999999999999999999999999998766543
No 217
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.15 E-value=4.9e-06 Score=54.48 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=35.5
Q ss_pred hhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEe--CCEEeEecCh
Q psy18239 8 HSRKNS-QTWISFGLFYSSLEECEALCTRLAVMV--NGRLSCLGSV 50 (97)
Q Consensus 8 ~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~--~G~i~~~g~~ 50 (97)
.+.+.. +.+.|+|++||+++++..+||++++|+ +|++...++.
T Consensus 173 ~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 173 ELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 344443 347899999999999999999999999 7999887764
No 218
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.13 E-value=1.1e-05 Score=53.15 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=38.5
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.+..+ +.++|++||+++.+.. ||++++|++|++...|+.+++..
T Consensus 179 ~l~~~~~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 179 ALRDVSK-GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred HHHHhcC-CCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHHhh
Confidence 3444545 8899999999999976 99999999999999988877654
No 219
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.13 E-value=5.6e-06 Score=60.39 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=37.0
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecCh
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSV 50 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 50 (97)
..+.++.++|.|+|++|||++++..+||++++|.+|++...++.
T Consensus 450 ~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 450 KVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 34455555689999999999999999999999999999877654
No 220
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.12 E-value=6.4e-06 Score=59.84 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=37.2
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecCh
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSV 50 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 50 (97)
..+..+.++|.|+|++|||++++..+||++++|.+|++...++.
T Consensus 432 ~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 432 QLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred HHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence 34555556689999999999999999999999999999876644
No 221
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.12 E-value=7.1e-06 Score=55.28 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=36.0
Q ss_pred hhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChH
Q psy18239 9 SRKNS-QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQ 51 (97)
Q Consensus 9 ~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 51 (97)
+.++. +.+.|+|++||+++++..+||++++|++|++...++..
T Consensus 176 L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 176 IESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 44443 34799999999999999999999999999998877653
No 222
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.11 E-value=6.3e-06 Score=53.09 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=33.1
Q ss_pred hhhhhccCCcEEEEEeCCHH-HHHhhcCeEEEEeC-CEEeEec
Q psy18239 8 HSRKNSQTWISFGLFYSSLE-ECEALCTRLAVMVN-GRLSCLG 48 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 48 (97)
.+.+..+.+.|+|++||+++ ++..+||++++|++ |++.+.|
T Consensus 150 ~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 150 FLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 34445455899999999998 47888999999998 9987654
No 223
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.11 E-value=8.3e-06 Score=51.99 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=33.1
Q ss_pred hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEe
Q psy18239 8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCL 47 (97)
Q Consensus 8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 47 (97)
.+.+..++ +.|+|++||+++++..+||++++|++|++...
T Consensus 139 ~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 139 LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 34444444 78999999999999999999999999998754
No 224
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.11 E-value=5.1e-06 Score=54.21 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=31.1
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 44 (97)
.+.+..+++.|+|++||+++++..+||++++|++|++
T Consensus 180 ~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 180 LFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 3444445589999999999999999999999999874
No 225
>PLN03211 ABC transporter G-25; Provisional
Probab=98.11 E-value=5.7e-06 Score=62.34 Aligned_cols=52 Identities=12% Similarity=0.025 Sum_probs=43.7
Q ss_pred hhhhhhhccCCcEEEEEeCCHH-HHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 6 CQHSRKNSQTWISFGLFYSSLE-ECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 6 ~~~~~~~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
.+.++++.++|+|+|+++|+++ ++..++|++++|.+|++++.|+++++...+
T Consensus 246 ~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f 298 (659)
T PLN03211 246 VLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYF 298 (659)
T ss_pred HHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHH
Confidence 3445566556899999999998 588999999999999999999999886544
No 226
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.10 E-value=8.7e-06 Score=53.98 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=33.8
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
.+.+..+ .+.|+|++||+++++..+||++++|.+|++...|
T Consensus 195 ~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 195 FLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 3445444 4789999999999999999999999999987653
No 227
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.10 E-value=1.4e-05 Score=52.36 Aligned_cols=41 Identities=7% Similarity=0.178 Sum_probs=36.9
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.++|++||++..+..+||++++|++|++...++.++..+.
T Consensus 153 ~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 193 (213)
T PRK15177 153 QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATAL 193 (213)
T ss_pred CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHH
Confidence 35799999999999999999999999999999999887543
No 228
>PRK10908 cell division protein FtsE; Provisional
Probab=98.10 E-value=7.9e-06 Score=53.56 Aligned_cols=39 Identities=8% Similarity=0.040 Sum_probs=32.8
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSC 46 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 46 (97)
.+.+..+++.++|++||+++++..+||++++|++|++..
T Consensus 179 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 179 LFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 345554557899999999999999999999999999743
No 229
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.09 E-value=8.8e-06 Score=52.51 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=32.8
Q ss_pred hhhhccCCcEEEEEeCCHH-HHHhhcCeEEEEeCCEEeEec
Q psy18239 9 SRKNSQTWISFGLFYSSLE-ECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g 48 (97)
+.+..+++.|+|++||+++ ++..+||++++|++|++...|
T Consensus 154 l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 154 LRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 4444445899999999996 788899999999999987643
No 230
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=8.3e-06 Score=53.03 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=33.2
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
.+.+..+ +.|+|++||+++++..+||++++|++|++...|
T Consensus 172 ~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 172 LLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 3444444 489999999999999999999999999987653
No 231
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.09 E-value=8.2e-06 Score=53.65 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=33.9
Q ss_pred hhhhhccCCcEEEEEeCCH-HHHHhhcCeEEEEeCCEEeEec
Q psy18239 8 HSRKNSQTWISFGLFYSSL-EECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g 48 (97)
.+.+..+.+.|+|++||++ .++..+||++++|++|++...|
T Consensus 185 ~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 185 TLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 3444545588999999999 6899999999999999987654
No 232
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=4.3e-06 Score=61.27 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=39.8
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.++.+.. +++|+||+||++..++. ||+|++|++|+++.+|.+.++..
T Consensus 515 ~ll~~~~-~~kTll~vTHrL~~le~-~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 515 ALLFEHA-EGKTLLMVTHRLRGLER-MDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHHHh-cCCeEEEEecccccHhh-cCEEEEEECCeeeecCCHHhhhc
Confidence 3344433 37999999999999876 99999999999999999999876
No 233
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.07 E-value=1.5e-05 Score=53.41 Aligned_cols=40 Identities=10% Similarity=-0.018 Sum_probs=36.3
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
++.|+|++||+++.+.. ||++++|++|++...|+++++..
T Consensus 204 ~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 204 ADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred CCCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence 47899999999999986 99999999999999999888754
No 234
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.06 E-value=7.6e-06 Score=61.14 Aligned_cols=53 Identities=21% Similarity=0.155 Sum_probs=44.2
Q ss_pred hhhhhhhhccCCcEEEEEeCCHH-HHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 5 RCQHSRKNSQTWISFGLFYSSLE-ECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 5 ~~~~~~~~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
-+..++++.+.|+|+|+++|++. ++..+||++++|.+|++++.|+++++...+
T Consensus 205 l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f 258 (617)
T TIGR00955 205 VVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFF 258 (617)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHH
Confidence 34455666666899999999995 788999999999999999999999986544
No 235
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=1.2e-05 Score=54.36 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=38.7
Q ss_pred hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.+..++ +.|+|++||+++++. .||++++|.+|++...|+..++..
T Consensus 184 ~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 184 IMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHhc
Confidence 34454444 589999999999986 799999999999999998887654
No 236
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.06 E-value=1.1e-05 Score=58.76 Aligned_cols=43 Identities=21% Similarity=0.181 Sum_probs=36.0
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS 49 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 49 (97)
..+.++.++|.|+|++||+++++..+||++++|++|++...++
T Consensus 181 ~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 181 RVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 3345555568999999999999999999999999999887654
No 237
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.06 E-value=1.7e-05 Score=54.61 Aligned_cols=47 Identities=4% Similarity=0.100 Sum_probs=38.7
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeE-EEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRL-AVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i-~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.+ +.++|++||+++.+..+||++ ++|++|++...|+++++..
T Consensus 242 ~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 242 LIEELAE-EYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFE 289 (305)
T ss_pred HHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHHHHh
Confidence 3444444 489999999999999999997 5789999999999888754
No 238
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.04 E-value=2e-05 Score=53.80 Aligned_cols=47 Identities=6% Similarity=0.146 Sum_probs=38.1
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEE-EEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLA-VMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.+ +.++|++||+++++..+||+++ +|++|++...|++.++..
T Consensus 222 ~L~~~~~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~ 269 (285)
T PRK14254 222 LIEELAE-EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFE 269 (285)
T ss_pred HHHHHhc-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHh
Confidence 3444444 3799999999999999999975 679999999998887654
No 239
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.04 E-value=1.4e-05 Score=53.58 Aligned_cols=47 Identities=9% Similarity=0.037 Sum_probs=38.1
Q ss_pred hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.++.++ +.|+|++||+++++..+||++++|+ +++...|+++++..
T Consensus 162 ~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~~~ 209 (251)
T PRK09544 162 LIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLN-HHICCSGTPEVVSL 209 (251)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEC-CceEeeCCHHHHhC
Confidence 34444444 7999999999999999999999996 47888998887643
No 240
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.04 E-value=8.2e-06 Score=52.09 Aligned_cols=37 Identities=32% Similarity=0.433 Sum_probs=31.1
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 44 (97)
.+.+..+++.|+|++||+++++..+||++++|++|++
T Consensus 146 ~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 146 LIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 3445544579999999999999999999999999863
No 241
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.04 E-value=8.5e-06 Score=52.94 Aligned_cols=38 Identities=11% Similarity=0.208 Sum_probs=31.7
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 44 (97)
..+.++.+.|.|+|++||+++++..+||++++|++|++
T Consensus 176 ~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 176 DVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 33455555688999999999999999999999999864
No 242
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.03 E-value=7.8e-06 Score=53.10 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=30.8
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 43 (97)
..+.+..+++.++|++||+++++..+||++++|++|+
T Consensus 175 ~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 175 ELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 3344555458999999999999999999999999884
No 243
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.01 E-value=1.3e-05 Score=52.13 Aligned_cols=40 Identities=8% Similarity=0.016 Sum_probs=31.7
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEe
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCL 47 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 47 (97)
+.+.+..+++.|+|++||+++++..+||++++|++| +++.
T Consensus 173 ~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 173 ELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 334455446889999999999999999999999876 4443
No 244
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.01 E-value=1e-05 Score=52.70 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=30.3
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 43 (97)
.+.+..+++.|+|++||+++++..+||++++|++|+
T Consensus 179 ~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 179 LLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 344444458999999999999999999999999884
No 245
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.00 E-value=1.1e-05 Score=52.41 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=31.0
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 44 (97)
.+.+..+++.|+|++||+++.+..+||++++|++|++
T Consensus 178 ~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 178 LLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 3445544589999999999999999999999999874
No 246
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.00 E-value=2e-05 Score=51.80 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=43.3
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
++++.+.. ..+|+++.|||.++..+++++.+|..|.+.++|+.+++...+.
T Consensus 188 eLl~~la~-~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~dp~ 238 (249)
T COG4674 188 ELLKSLAG-KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDPK 238 (249)
T ss_pred HHHHHHhc-CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcCcc
Confidence 34455544 5899999999999999999999999999999999999876543
No 247
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.00 E-value=2.3e-05 Score=57.54 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=36.2
Q ss_pred ccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHHH
Q psy18239 13 SQTWISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHLK 54 (97)
Q Consensus 13 ~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l~ 54 (97)
.+.+.|||++||+++.+..+||++++|++|++. +.|++++..
T Consensus 199 ~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 199 NERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred HhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 345789999999999999999999999999984 678777653
No 248
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.99 E-value=1.7e-05 Score=51.45 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=33.0
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS 49 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 49 (97)
.+.+.. ++.|+|++||+++.+.. ||++++|++|++...|+
T Consensus 167 ~l~~~~-~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 167 TIREEF-TNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDH 206 (207)
T ss_pred HHHHhc-CCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCC
Confidence 344443 47999999999999976 99999999999987765
No 249
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.94 E-value=2.7e-05 Score=52.31 Aligned_cols=44 Identities=20% Similarity=0.099 Sum_probs=35.5
Q ss_pred hhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEe--CCEEeEecChH
Q psy18239 8 HSRKNS-QTWISFGLFYSSLEECEALCTRLAVMV--NGRLSCLGSVQ 51 (97)
Q Consensus 8 ~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~--~G~i~~~g~~~ 51 (97)
.+.++. +.|.|+|++||+++++..+||++++|+ +|++...++..
T Consensus 170 ~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 170 LLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 344443 348999999999999999999999998 59998877543
No 250
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.94 E-value=3.5e-05 Score=56.59 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=36.4
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHHHHh
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHLKNK 56 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l~~~ 56 (97)
+.|+|++|||++++..+||++++|.+|+++ ..|++.++.+.
T Consensus 485 ~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 485 EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 469999999999999999999999999987 77888887654
No 251
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.94 E-value=1.7e-05 Score=53.27 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=28.0
Q ss_pred hccCCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239 12 NSQTWISFGLFYSSLEECEALCTRLAVMVNG 42 (97)
Q Consensus 12 ~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 42 (97)
..+.+.|++++|||+++|..++||+++|.++
T Consensus 177 w~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 177 WEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 3456899999999999999999999999985
No 252
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.93 E-value=1.8e-05 Score=50.10 Aligned_cols=38 Identities=34% Similarity=0.458 Sum_probs=31.4
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 44 (97)
+.+.++.++|.++|++||+++++..+||++++|++|++
T Consensus 136 ~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 33455555578999999999999999999999999863
No 253
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=2.4e-05 Score=57.70 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=39.9
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.++.+ ++|++++||++..+.. +|+|++|++|++++.|.++++.++
T Consensus 499 l~~l~~-~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 499 LQELAK-QKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred HHHHHh-CCeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHhhc
Confidence 444444 4899999999999887 999999999999999999998664
No 254
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.89 E-value=3.6e-05 Score=52.17 Aligned_cols=42 Identities=7% Similarity=0.037 Sum_probs=35.0
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecCh
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSV 50 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~ 50 (97)
.+..+.+.|.|+|++||+++.+. .||+++.| .+|++++.|++
T Consensus 214 ~L~~l~~~g~tvIiitH~~~~i~-~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 214 VLQRLVDKGNTVVVIEHNLDVIK-CADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCC
Confidence 34455556899999999999986 69999999 79999998864
No 255
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.89 E-value=1.9e-05 Score=50.01 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=29.3
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 44 (97)
.+.+..+++.|+|++||+++.+. +||++++|++|++
T Consensus 138 ~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 138 AIAALKAAGATRIVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence 34455555899999999999885 7999999999863
No 256
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.88 E-value=2.4e-05 Score=52.01 Aligned_cols=39 Identities=10% Similarity=0.108 Sum_probs=31.8
Q ss_pred hhhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239 5 RCQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 5 ~~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 44 (97)
.+.++.++.+ .|.|+||+|||...+. +|||++.|.+|++
T Consensus 181 V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 181 VLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence 3455666654 4899999999999776 6999999999983
No 257
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.88 E-value=3.4e-05 Score=50.39 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=30.7
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEe
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCL 47 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 47 (97)
.+.+..++ .|+|++||+++.. .+||++++|++|++...
T Consensus 182 ~l~~~~~~-~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 182 RLRQLLGD-KTLIIITHRPSLL-DLVDRIIVMDSGRIVAD 219 (220)
T ss_pred HHHHhcCC-CEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence 34454443 8999999999986 68999999999998754
No 258
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.88 E-value=2.2e-05 Score=51.25 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=30.2
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 44 (97)
..+.++.+ .+.|+|++||+++++. +||++++|++|++
T Consensus 181 ~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 181 ELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 33455554 4899999999999987 8999999999873
No 259
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.86 E-value=6.1e-06 Score=53.44 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=42.7
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+..+.+.|.+|||++||++...+++|++.++..|++...|+.+++.+
T Consensus 175 l~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 175 LSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred HHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 45677889999999999999999999999999999999999888654
No 260
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.86 E-value=5.2e-05 Score=56.02 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=37.5
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+++|+++++|.++.+.. ||++++|++|++.+.|+++++...
T Consensus 513 ~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 513 KGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred cCCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHHHHc
Confidence 45799999999998887 999999999999999999999775
No 261
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.86 E-value=4.8e-05 Score=57.53 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=37.4
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.++|+|++||+++.+.. ||++++|++|++...|+.+++.+.
T Consensus 661 ~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 661 RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHHHHc
Confidence 57999999999998865 999999999999999999998764
No 262
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.85 E-value=7.2e-05 Score=56.50 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=37.3
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
+++|+|++||+++.+. .||++++|++|++.+.|+.+++.+..
T Consensus 649 ~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~G~~~eLl~~~ 690 (694)
T TIGR03375 649 AGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQVLEAL 690 (694)
T ss_pred CCCEEEEEecCHHHHH-hCCEEEEEeCCEEEeeCCHHHHHHHh
Confidence 3689999999999875 69999999999999999999987653
No 263
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=3.3e-05 Score=49.15 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=30.1
Q ss_pred hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239 8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~ 43 (97)
.+.++.++ +.|+|++||+++++..+||++++|++|+
T Consensus 142 ~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 142 LLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 34455555 7899999999999999999999999874
No 264
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.84 E-value=5.7e-05 Score=57.34 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=37.7
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
.++|+|++||+++.+.. ||++++|++|++.+.|+++++.++.
T Consensus 663 ~~~TvIiItHrl~~i~~-aD~IivL~~G~ive~Gt~~eL~~~~ 704 (711)
T TIGR00958 663 ASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQ 704 (711)
T ss_pred CCCeEEEEeccHHHHHh-CCEEEEEECCEEEEeeCHHHHHhCC
Confidence 57899999999998765 9999999999999999999987653
No 265
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.83 E-value=7.4e-05 Score=51.08 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=35.7
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
++.++|++||+++.+. .||++++|++|++...|+++++..
T Consensus 208 ~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 208 ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 3689999999999985 699999999999999999888754
No 266
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.82 E-value=2.9e-05 Score=50.15 Aligned_cols=42 Identities=14% Similarity=0.084 Sum_probs=34.9
Q ss_pred hhhhhhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE
Q psy18239 4 DRCQHSRKNS-QTWISFGLFYSSLEECEALCTRLAVMVNGRLSC 46 (97)
Q Consensus 4 ~~~~~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 46 (97)
+..+++..+. +.|.|++++|||+..+.+ |+|.+.|..|++..
T Consensus 184 ~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~ 226 (228)
T COG4181 184 KIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceecc
Confidence 3456666654 569999999999999988 99999999999864
No 267
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.82 E-value=5.8e-05 Score=55.54 Aligned_cols=46 Identities=11% Similarity=0.149 Sum_probs=38.2
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.....+++|+|++||+++.+ ..||++++|++|++...|+.+++.+
T Consensus 497 l~~~~~~~~tvi~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 497 IKALKARGITVVVITHRPSLL-GCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEeeCCHHHHhh
Confidence 444444578999999999876 4699999999999999999888754
No 268
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.80 E-value=5e-05 Score=55.24 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=36.2
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
.++.+.+.|+|||++||-++++.++|||+.+|++|+.+...
T Consensus 182 ~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~ 222 (501)
T COG3845 182 ILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV 222 (501)
T ss_pred HHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee
Confidence 36677788999999999999999999999999999976543
No 269
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.79 E-value=8.1e-05 Score=47.29 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=30.8
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
+.+.. ++.|+|++||+++++. .||++++|++|++...|
T Consensus 141 l~~~~-~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 141 IFEVL-KDKTLIWITHHLTGIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHc-CCCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence 34443 4789999999999986 59999999999987643
No 270
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=97.79 E-value=4.8e-05 Score=55.66 Aligned_cols=45 Identities=22% Similarity=0.163 Sum_probs=38.9
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQ 51 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 51 (97)
....++.++|++|||+|.+++++..+||||++|++|++...-+..
T Consensus 442 ~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 442 RLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred HHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 446677888999999999999999999999999999998854443
No 271
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.78 E-value=9.7e-05 Score=54.82 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=36.5
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.++|+|++||+++.+.. ||++++|++|++...|+.+++...
T Consensus 524 ~~~tvIivtHr~~~l~~-~D~ii~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 524 EHTTLVVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred CCCEEEEEecchHHHHh-CCEEEEEECCEEEEEcCHHHHHhC
Confidence 35899999999988765 999999999999999999998654
No 272
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.77 E-value=8.5e-05 Score=56.06 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=36.3
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
++|+|++||+++.+.. ||++++|++|++...|+.+++.+.
T Consensus 635 ~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 635 KVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred CCeEEEEecChHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 5899999999998865 999999999999999999998653
No 273
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.76 E-value=8.3e-05 Score=48.59 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=32.1
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS 49 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 49 (97)
+.+..+ +.|+|++||+++++.. ||++++|++|++...|+
T Consensus 182 l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 182 IREAFK-DCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHhcC-CCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence 344433 5899999999999976 99999999999987765
No 274
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.75 E-value=8.2e-05 Score=55.95 Aligned_cols=39 Identities=8% Similarity=0.079 Sum_probs=35.0
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHHH
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHLK 54 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l~ 54 (97)
+.|||++|||+.++..+||++++|.+|++. +.|+.++..
T Consensus 477 ~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 477 EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 459999999999999999999999999987 788888863
No 275
>PLN03232 ABC transporter C family member; Provisional
Probab=97.75 E-value=9.2e-05 Score=60.26 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=38.4
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
+++|+|+++|.++.+.. ||+|++|++|++++.|+++++.++.
T Consensus 1419 ~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl~~~ 1460 (1495)
T PLN03232 1419 KSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRD 1460 (1495)
T ss_pred CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCC
Confidence 47999999999999887 9999999999999999999997654
No 276
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.75 E-value=9.1e-05 Score=56.00 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=37.1
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.++|+|++||+++.+.. ||++++|++|++...|+.+++...
T Consensus 641 ~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 641 RGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEELLAL 681 (694)
T ss_pred CCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEeCCHHHHHHc
Confidence 47899999999998865 999999999999999999998764
No 277
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.75 E-value=0.0001 Score=54.61 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=36.7
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+++|+|++||+++.+.. ||++++|++|++.+.|+.+++...
T Consensus 533 ~~~TvIiItHrl~~i~~-aD~Iivl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 533 RRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred CCCEEEEEecChHHHHh-CCEEEEEeCCeEeecCCHHHHHhc
Confidence 47899999999988765 999999999999999999998653
No 278
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.74 E-value=7.6e-05 Score=58.24 Aligned_cols=48 Identities=6% Similarity=0.012 Sum_probs=40.9
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKN 55 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 55 (97)
..+.++.+.|.|||+++|+++.+. .||++++| ++|+++..|+++++..
T Consensus 530 ~~L~~L~~~G~TVIvVeHd~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 530 NTLKRLRDLGNTVIVVEHDEETIR-AADYVIDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred HHHHHHHhCCCEEEEEECCHHHHh-hCCEEEEecccccCCCCEEeeccCHHHHhc
Confidence 345556667899999999999986 79999999 8999999999988753
No 279
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.74 E-value=0.00011 Score=54.30 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=36.4
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+++|+|++||+++.+. .||++++|++|++.+.|+.+++...
T Consensus 528 ~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 528 KNRTSLVIAHRLSTIE-KADEILVVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred CCCEEEEEecchHHHH-hCCEEEEEECCEEEEeCCHHHHHhC
Confidence 4689999999998765 5999999999999999999998654
No 280
>PLN03130 ABC transporter C family member; Provisional
Probab=97.73 E-value=0.00011 Score=60.33 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=37.9
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+++|+|+++|.++.+.. ||+|++|++|++++.|+++++.++
T Consensus 1422 ~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1422 KSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred CCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHHHhC
Confidence 47999999999999987 999999999999999999998764
No 281
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.72 E-value=7.1e-05 Score=49.81 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=33.2
Q ss_pred hccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 12 NSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 12 ~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
..+.+.|.+|+||+|++|..|.+|.++|+.|+++..-
T Consensus 195 V~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 195 VEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 3456899999999999999999999999999998764
No 282
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=0.00011 Score=48.43 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=33.1
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS 49 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 49 (97)
.+.++.+ .|.|+|++||+++++.. ++++++|.+|++...++
T Consensus 187 ~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 187 LLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEec
Confidence 3445443 48999999999999887 47999999999987765
No 283
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.71 E-value=0.00012 Score=59.70 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=37.8
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+++|+|+++|.++.+.. ||+|++|++|++++.|+++++.++
T Consensus 1469 ~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1469 EDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 47999999999999886 899999999999999999998764
No 284
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.70 E-value=9.6e-05 Score=57.81 Aligned_cols=48 Identities=4% Similarity=0.037 Sum_probs=40.7
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKN 55 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 55 (97)
..+..+.+.|.|||+++|+++++. .||++++| .+|++++.|+++++..
T Consensus 532 ~~L~~L~~~G~TVIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 532 ETLKHLRDLGNTLIVVEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 345556667899999999999986 59999999 8999999999998754
No 285
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.70 E-value=0.0001 Score=48.40 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=30.6
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSC 46 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 46 (97)
.+.+..+ .|.|+|++||+++.+.. ||++++|++|++..
T Consensus 188 ~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~ 226 (228)
T PRK10584 188 LLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEe
Confidence 3445444 47899999999998865 99999999999864
No 286
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.70 E-value=6.5e-05 Score=49.13 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=40.5
Q ss_pred cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 14 QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
+.|.+.|.++.++..+..++|.+++|+.|++++.|++.+++..+
T Consensus 198 k~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P 241 (267)
T COG4167 198 KQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP 241 (267)
T ss_pred HhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCC
Confidence 45999999999999999999999999999999999999987643
No 287
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.69 E-value=0.00011 Score=47.09 Aligned_cols=35 Identities=9% Similarity=-0.115 Sum_probs=28.1
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 44 (97)
+.+..+.|.++|++||+++++ ..||++++|.+|+.
T Consensus 132 l~~~~~~g~tvIivSH~~~~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 132 IKGLIDLGNTVILIEHNLDVL-SSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHhCCCEEEEEeCCHHHH-HhCCEEEEECCCCC
Confidence 444444689999999999987 57999999977654
No 288
>PTZ00243 ABC transporter; Provisional
Probab=97.69 E-value=0.00013 Score=59.64 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=37.4
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+++|+|+++|.++.+.. ||+|++|++|++.+.|+++++..+
T Consensus 1494 ~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1494 SAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred CCCEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 47899999999998876 999999999999999999999764
No 289
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.67 E-value=0.00018 Score=53.50 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=36.8
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.++|+|++||+++.+.. ||++++|++|++...|+.+++.++
T Consensus 519 ~~~tvI~isH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 519 KNRTTFIIAHRLSTVRN-ADLVLFLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred CCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHHC
Confidence 47999999999998865 999999999999999999988654
No 290
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.67 E-value=0.00014 Score=55.15 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=36.8
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+++|+|++||+++.+. .||++++|++|++...|+.+++...
T Consensus 658 ~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 658 QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred cCCEEEEEecchHHHH-cCCEEEEEECCEEEEECCHHHHHhc
Confidence 4689999999999875 5999999999999999999998764
No 291
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.66 E-value=9.6e-05 Score=48.29 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=29.8
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLS 45 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 45 (97)
.+.++.+ .+.|+|++||+++.+.. ||++++|++|+++
T Consensus 183 ~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 183 LMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 3444444 47899999999999865 8999999999864
No 292
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.66 E-value=0.00014 Score=53.82 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=36.5
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+++|+|++||+++.+.. ||++++|++|++...|+.+++...
T Consensus 499 ~~~tii~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 539 (569)
T PRK10789 499 EGRTVIISAHRLSALTE-ASEILVMQHGHIAQRGNHDQLAQQ 539 (569)
T ss_pred CCCEEEEEecchhHHHc-CCEEEEEeCCEEEEecCHHHHHHc
Confidence 57999999999988765 999999999999999999988653
No 293
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.66 E-value=0.00018 Score=53.41 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=37.0
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+++|+|++||+++.+.. ||++++|++|++...|+.+++.+.
T Consensus 523 ~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 523 QNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred CCCEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHHHhc
Confidence 47899999999998865 999999999999999999998654
No 294
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.66 E-value=9.6e-05 Score=48.30 Aligned_cols=46 Identities=15% Similarity=0.082 Sum_probs=39.9
Q ss_pred hhhhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239 4 DRCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS 49 (97)
Q Consensus 4 ~~~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 49 (97)
..+.++.++...|.||+|+|||.+.+..+.-|++.+++|++.....
T Consensus 175 ~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 175 EIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 3456677888889999999999999999999999999999876543
No 295
>PLN03073 ABC transporter F family; Provisional
Probab=97.65 E-value=0.00019 Score=54.78 Aligned_cols=39 Identities=13% Similarity=0.097 Sum_probs=34.0
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHHH
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHLK 54 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l~ 54 (97)
+.|+|++|||++.+..+||++++|.+|++. +.|+..+..
T Consensus 674 ~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 674 QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 359999999999999999999999999987 677776653
No 296
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.65 E-value=9.3e-05 Score=59.90 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=43.7
Q ss_pred hhhhhhhhhcc-CCcEEEEEeCCH-HHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 4 DRCQHSRKNSQ-TWISFGLFYSSL-EECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 4 ~~~~~~~~~~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.-+..++++.+ .|.|+|+++|++ +++..++|++++|.+|++++.|+++++...
T Consensus 247 ~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~y 301 (1394)
T TIGR00956 247 EFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQY 301 (1394)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHH
Confidence 34455666665 489999999996 788899999999999999999999887543
No 297
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.65 E-value=0.00016 Score=53.69 Aligned_cols=41 Identities=22% Similarity=0.206 Sum_probs=36.1
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+++|+|++||+++.+. .||++++|++|++...|+.+++...
T Consensus 519 ~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 519 KGRTTFIIAHRLSTVR-NADRILVFDNGRVVESGSFDELVAR 559 (588)
T ss_pred cCCEEEEEEecHHHHH-hCCEEEEEECCEEEEeCCHHHHHHC
Confidence 4699999999998765 5999999999999999999988643
No 298
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.64 E-value=0.00012 Score=55.82 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=40.0
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.+.+.. .|+|+|+++|.+..+.. ||++++|++|+++..|+.+++...
T Consensus 651 ~L~~~~-~~~T~I~IaHRl~ti~~-adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 651 NLLQIL-QGRTVIIIAHRLSTIRS-ADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHHHHh-cCCeEEEEEccchHhhh-ccEEEEccCCceeccCCHHHHHHh
Confidence 344443 36999999999998875 999999999999999999999875
No 299
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.63 E-value=0.00022 Score=52.81 Aligned_cols=38 Identities=8% Similarity=-0.131 Sum_probs=33.3
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHH
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHL 53 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l 53 (97)
+.|+|++||+++++..+||++++|++|++. +.|+.+..
T Consensus 210 ~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 210 PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred CCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 459999999999999999999999999986 66776654
No 300
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.62 E-value=0.0002 Score=48.03 Aligned_cols=45 Identities=13% Similarity=0.001 Sum_probs=33.3
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe--EecChHH
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLS--CLGSVQH 52 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~--~~g~~~~ 52 (97)
.+.+..+ .+.|+|++||+++.+..+||++++|.++... ..+++..
T Consensus 157 ~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 157 VIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 3445443 4799999999999999999999999765433 3455555
No 301
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.61 E-value=7.9e-05 Score=48.40 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=44.2
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCc
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVG 60 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 60 (97)
.+++.+.. -+.+++++|||+..+.-+++|..+|..|+++..|-.+.+...+...
T Consensus 192 DllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvLDDP~hP 246 (258)
T COG4107 192 DLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHP 246 (258)
T ss_pred HHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccccccCCCCc
Confidence 44556554 4899999999999999999999999999999999877776555433
No 302
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.61 E-value=0.00024 Score=52.51 Aligned_cols=38 Identities=8% Similarity=-0.131 Sum_probs=33.2
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHH
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHL 53 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l 53 (97)
+.++|++||+++.+..+||++++|++|++. +.|+.++.
T Consensus 208 ~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 208 PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSW 246 (552)
T ss_pred CCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHH
Confidence 469999999999999999999999999975 66777654
No 303
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.59 E-value=0.0001 Score=49.67 Aligned_cols=39 Identities=10% Similarity=0.015 Sum_probs=30.7
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSC 46 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 46 (97)
..+.++.+++.++|++||+++.+..+||++++|+ |++.+
T Consensus 180 ~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~ 218 (255)
T cd03236 180 RLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGA 218 (255)
T ss_pred HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCc
Confidence 3445555557999999999999999999999995 55543
No 304
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.59 E-value=0.00013 Score=46.93 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=40.4
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
.+++.+.|.|=+++||..+.+...+.+++.|++|+++..|+.+.+
T Consensus 184 ikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 184 IKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 355667799999999999999999999999999999999988764
No 305
>PLN03140 ABC transporter G family member; Provisional
Probab=97.58 E-value=0.00014 Score=59.22 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=43.4
Q ss_pred hhhhhhhhcc-CCcEEEEEeCCH-HHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 5 RCQHSRKNSQ-TWISFGLFYSSL-EECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 5 ~~~~~~~~~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
.+..++++.+ .|.|+|+++|++ +++..++|++++|.+|++++.|+.+++...+
T Consensus 375 i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF 429 (1470)
T PLN03140 375 IVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFF 429 (1470)
T ss_pred HHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHH
Confidence 3455666654 489999999996 6888999999999999999999998876543
No 306
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.58 E-value=0.00015 Score=44.72 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=26.0
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~ 43 (97)
+.|++++||+++++..+||++++|++|+
T Consensus 117 ~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 117 PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 5799999999999999999999999885
No 307
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.57 E-value=0.00027 Score=57.68 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=36.7
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.++|+|+++|.++.+.. ||++++|++|+++..|+++++..
T Consensus 1401 ~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1401 SNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHHHc
Confidence 46999999999998876 99999999999999999999864
No 308
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.56 E-value=0.00026 Score=55.50 Aligned_cols=49 Identities=6% Similarity=0.023 Sum_probs=40.6
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHHhh
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~ 57 (97)
.+..+.+.|.|+|++||+++.+. .||+++.| .+|++++.|+++++....
T Consensus 875 ~L~~l~~~G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~ 929 (943)
T PRK00349 875 VLHRLVDKGNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAKVE 929 (943)
T ss_pred HHHHHHhCCCEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCc
Confidence 34455556899999999999986 69999999 689999999999986543
No 309
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=97.56 E-value=0.00016 Score=54.56 Aligned_cols=45 Identities=7% Similarity=-0.036 Sum_probs=38.2
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
+.++.+++.+++++||+++.+. .||++++|++|++...|+.++..
T Consensus 187 l~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 187 LHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCccccc
Confidence 4444456899999999999876 59999999999999999998764
No 310
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.55 E-value=0.00028 Score=52.17 Aligned_cols=45 Identities=18% Similarity=0.123 Sum_probs=37.7
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+.... .++|+|++||+++.+. .||+++.|++|++...|+++++..
T Consensus 519 l~~~~-~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 519 LETLM-KGRTTLIIAHRLATVL-KADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHh-CCCEEEEEecchHHHH-hCCEEEEEECCEEEeeecHHHHHH
Confidence 44443 4799999999998775 599999999999999999988754
No 311
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=0.00019 Score=44.57 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=28.8
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 43 (97)
+.+..+.+.+++++||+++++..+||+++++.+|+
T Consensus 123 l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 33333446899999999999999999999998874
No 312
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.54 E-value=0.00011 Score=53.51 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=39.8
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQH 52 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 52 (97)
.+.+.++.|.+|+++|.+++++.++|||+++|.+|++....++++
T Consensus 445 ~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 445 RLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred HHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 355667789999999999999999999999999999998877765
No 313
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.54 E-value=0.00027 Score=52.11 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=37.9
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.+.. .++|+|++||+.+.. ..||+++.|++|++...|+.+++..
T Consensus 511 ~L~~~~-~~~tiIiitH~~~~~-~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 511 ALERLM-QGRTTLVIAHRLSTI-EKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HHHHHh-CCCEEEEEehhhHHH-HhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 344442 468999999999876 4599999999999999999999864
No 314
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.51 E-value=0.00022 Score=45.69 Aligned_cols=37 Identities=16% Similarity=0.033 Sum_probs=29.7
Q ss_pred hhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEe
Q psy18239 9 SRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLS 45 (97)
Q Consensus 9 ~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 45 (97)
+.+..++ +.++|++||+++.+..+||++++|+++...
T Consensus 114 l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 114 IRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred HHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 3444444 489999999999999999999999877554
No 315
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.00021 Score=45.16 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=27.2
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 43 (97)
+.++.+ +.++|++||+++++.. ||++++|++|+
T Consensus 139 l~~~~~-~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 139 LRALAK-GKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHhcC-CCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 334433 6899999999999987 99999999874
No 316
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.50 E-value=0.00023 Score=46.59 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=29.5
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 44 (97)
..+.++.+ .+.|+|++||+++. ..+||++++|++|++
T Consensus 182 ~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 182 ELMQKLAREQGCTILIVTHDNRI-LDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence 33445444 48999999999985 578999999999975
No 317
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.49 E-value=0.00043 Score=52.18 Aligned_cols=41 Identities=7% Similarity=0.044 Sum_probs=33.9
Q ss_pred ccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHH
Q psy18239 13 SQTWISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHL 53 (97)
Q Consensus 13 ~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l 53 (97)
.+.+.|+|++|||..++..+||++++|++|++. +.|+....
T Consensus 193 ~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 193 KSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred HhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 334679999999999999999999999999986 45655544
No 318
>KOG0055|consensus
Probab=97.48 E-value=0.0003 Score=56.02 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=40.7
Q ss_pred hhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 11 KNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 11 ~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
+....|+|.|+++|.+..+.. +|++++|++|++++.|+++++....
T Consensus 533 d~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 533 DKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred HHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhcc
Confidence 344568999999999999998 9999999999999999999987654
No 319
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.48 E-value=0.00047 Score=51.85 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=32.9
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE-ecChHHH
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMVNGRLSC-LGSVQHL 53 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~l 53 (97)
+.+||++|||..++..+||+++.|++|++.. .|+....
T Consensus 203 ~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 203 QGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHH
Confidence 4699999999999999999999999999874 4766653
No 320
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.0003 Score=45.65 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=30.0
Q ss_pred hhhhhhccC-CcEEEE-EeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 7 QHSRKNSQT-WISFGL-FYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 7 ~~~~~~~~~-~~tiii-~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
..+.++.++ +.++++ ++|+.+++..+||++++|.+|++...|
T Consensus 159 ~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 159 KCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 334454443 566555 556678999999999999999987643
No 321
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.44 E-value=0.00028 Score=46.12 Aligned_cols=35 Identities=17% Similarity=0.010 Sum_probs=30.2
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 43 (97)
+.++.+++.|+|++||+++.+..+||+++++++|.
T Consensus 176 l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 176 LELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 44555558899999999999999999999999885
No 322
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.44 E-value=0.00039 Score=54.42 Aligned_cols=45 Identities=7% Similarity=0.057 Sum_probs=37.7
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHL 53 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l 53 (97)
.+.++.+.|.|+|+++|+++.+. .||+++.| .+|++++.|+++++
T Consensus 873 ~L~~l~~~G~TVIvi~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 873 VLQRLVDQGNTVVVIEHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 34455556899999999999885 59999999 79999999998764
No 323
>PLN03073 ABC transporter F family; Provisional
Probab=97.42 E-value=0.00057 Score=52.24 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=33.9
Q ss_pred hccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHH
Q psy18239 12 NSQTWISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQH 52 (97)
Q Consensus 12 ~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 52 (97)
+.+.+.|+|++||+.+++..+||++++|++|++. +.|+...
T Consensus 387 L~~~~~tviivsHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 387 LLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred HHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 3334789999999999999999999999999986 4565543
No 324
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.42 E-value=0.00047 Score=56.99 Aligned_cols=47 Identities=9% Similarity=0.001 Sum_probs=40.1
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe------CCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMV------NGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~------~G~i~~~g~~~~l~~ 55 (97)
.+..+.+.|.|||++||+++.+ .+||+++.|. +|+++..|+++++..
T Consensus 854 lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 854 VLQSLTHQGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred HHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 3455556689999999999998 7899999996 789999999998764
No 325
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.42 E-value=0.00022 Score=51.91 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=33.0
Q ss_pred hhhhhhccCC-cEEEEEeCCHHHHHh-hcCeEEEEeCCEEeEec
Q psy18239 7 QHSRKNSQTW-ISFGLFYSSLEECEA-LCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 7 ~~~~~~~~~~-~tiii~tH~~~~~~~-~~d~i~~l~~G~i~~~g 48 (97)
..+.++.+++ .|+|++||+++++.. +||++++|.+|++....
T Consensus 442 ~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 442 RFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 3455555554 579999999999987 59999999999987654
No 326
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.38 E-value=0.00033 Score=45.92 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=27.6
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 44 (97)
+.+..+ +.|+|++||+++++.. ||++++|++|++
T Consensus 193 l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 193 LYDWPE-RRTVLVIAHRLSTVER-ADQILVLDGGRI 226 (226)
T ss_pred HHHHcC-CCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence 344433 5899999999999975 999999999863
No 327
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.37 E-value=0.00036 Score=45.12 Aligned_cols=31 Identities=19% Similarity=0.083 Sum_probs=26.9
Q ss_pred hccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239 12 NSQTWISFGLFYSSLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 12 ~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 43 (97)
..+++.|+|++||+++.+.. ||++++|.+|+
T Consensus 174 ~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 174 LLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred hccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 33457999999999999988 99999999884
No 328
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.33 E-value=0.00028 Score=57.23 Aligned_cols=47 Identities=15% Similarity=0.124 Sum_probs=38.2
Q ss_pred hhhhhhhhccCCcEEEEEeCCHHHH-HhhcCeEEEEeCC-EEeEecChH
Q psy18239 5 RCQHSRKNSQTWISFGLFYSSLEEC-EALCTRLAVMVNG-RLSCLGSVQ 51 (97)
Q Consensus 5 ~~~~~~~~~~~~~tiii~tH~~~~~-~~~~d~i~~l~~G-~i~~~g~~~ 51 (97)
.+..++++.++|.|||+++|+++.. ...+|++++|.+| ++++.|++.
T Consensus 941 i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 941 ICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 3445666666789999999999874 5679999999987 999999863
No 329
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.32 E-value=0.0003 Score=51.73 Aligned_cols=49 Identities=10% Similarity=0.138 Sum_probs=42.4
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
+...+++|.+++++||.+..+.. +|++.+|++|++..+|+.+++..+..
T Consensus 515 i~~~k~rG~~vvviaHRPs~L~~-~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 515 ILAAKARGGTVVVIAHRPSALAS-VDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred HHHHHHcCCEEEEEecCHHHHhh-cceeeeecCChHHhcCCHHHHHHHhc
Confidence 34556779999999999997765 99999999999999999999987654
No 330
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.30 E-value=0.0011 Score=49.22 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=32.7
Q ss_pred cEEEEEeCCHHHHHhhcCeEEEEeC-CEEe-EecChHHHHH
Q psy18239 17 ISFGLFYSSLEECEALCTRLAVMVN-GRLS-CLGSVQHLKN 55 (97)
Q Consensus 17 ~tiii~tH~~~~~~~~~d~i~~l~~-G~i~-~~g~~~~l~~ 55 (97)
.++|++|||++++..+||++++|++ |++. +.|+.+++.+
T Consensus 493 ~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 493 GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 4899999999999999999999985 7765 5777777654
No 331
>PLN03140 ABC transporter G family member; Provisional
Probab=97.30 E-value=0.00041 Score=56.59 Aligned_cols=47 Identities=13% Similarity=0.059 Sum_probs=38.6
Q ss_pred hhhhhhhhccCCcEEEEEeCCHH-HHHhhcCeEEEEeC-CEEeEecChH
Q psy18239 5 RCQHSRKNSQTWISFGLFYSSLE-ECEALCTRLAVMVN-GRLSCLGSVQ 51 (97)
Q Consensus 5 ~~~~~~~~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 51 (97)
.+..++++.+.|.|||+++|+++ ++..+||++++|.+ |++++.|+..
T Consensus 1058 v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1058 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence 34456666667899999999998 57789999999986 8999999863
No 332
>KOG0054|consensus
Probab=97.29 E-value=0.00047 Score=55.71 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=36.2
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+++|+|++||.+..... ||.|++|++|++...|+.+++.+
T Consensus 692 ~~KT~ILVTHql~~L~~-ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 692 RGKTVILVTHQLQFLPH-ADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred cCCEEEEEeCchhhhhh-CCEEEEecCCeEecccCHHHHHh
Confidence 46899999999887765 99999999999999999999874
No 333
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.29 E-value=0.00043 Score=45.20 Aligned_cols=34 Identities=6% Similarity=-0.144 Sum_probs=28.3
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVN 41 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 41 (97)
.+.+..+++.|+|++||+++++..+|+++++++.
T Consensus 179 ~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 179 MISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 3444555688999999999999999999999864
No 334
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.28 E-value=0.00081 Score=55.66 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=38.7
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe------CCEEeEecChHHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMV------NGRLSCLGSVQHLK 54 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~------~G~i~~~g~~~~l~ 54 (97)
..+..+.+.|.|||+++|+++ +..+||++++|. +|++++.|+++++.
T Consensus 519 ~lL~~L~~~G~TVIvVeHd~~-vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil 571 (1809)
T PRK00635 519 NVIKKLRDQGNTVLLVEHDEQ-MISLADRIIDIGPGAGIFGGEVLFNGSPREFL 571 (1809)
T ss_pred HHHHHHHhCCCEEEEEeCcHH-HHHhCCEEEEEcCCcccCCCEEEEecCHHHHh
Confidence 345566666899999999999 557899999996 77999999988763
No 335
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.26 E-value=0.0012 Score=48.90 Aligned_cols=39 Identities=5% Similarity=-0.014 Sum_probs=31.8
Q ss_pred cEEEEEeCCHHHHHhhcCeEEEEeC-CEEe-EecChHHHHH
Q psy18239 17 ISFGLFYSSLEECEALCTRLAVMVN-GRLS-CLGSVQHLKN 55 (97)
Q Consensus 17 ~tiii~tH~~~~~~~~~d~i~~l~~-G~i~-~~g~~~~l~~ 55 (97)
.++|++|||++++..+||++++|++ |++. +.|+..+..+
T Consensus 491 ~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 491 GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 4899999999999999999999986 5765 5577665543
No 336
>PRK13409 putative ATPase RIL; Provisional
Probab=97.25 E-value=0.00054 Score=51.27 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=32.7
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS 49 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 49 (97)
..++++.+ .|.|+|++|||++++..+||++++|++ ++...|+
T Consensus 494 ~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 494 KAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 34555544 489999999999999999999999964 6665543
No 337
>KOG0057|consensus
Probab=97.23 E-value=0.0008 Score=49.83 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=37.7
Q ss_pred cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 14 QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
..++|+|++-|+++.+.. ||+|+++++|++...|+..++..
T Consensus 534 ~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 534 MSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred cCCCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHHhh
Confidence 358999999999998876 99999999999999999999876
No 338
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.22 E-value=0.00058 Score=45.68 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=46.0
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCce
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGY 61 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 61 (97)
.++..+.+ +|.+|++++||+..+.+.||++-+|.=|..+..++.+++...+...|
T Consensus 199 RLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~PhHPY 254 (330)
T COG4170 199 RLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMPHHPY 254 (330)
T ss_pred HHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcCCCCch
Confidence 34555555 48999999999999999999999999999999999999887665544
No 339
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.20 E-value=0.0011 Score=54.26 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=36.1
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+++|+|++||+++.+.. ||++++|++|++...|+.+++..
T Consensus 597 ~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 597 SNKTRILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred cCCeEEEEeCChHHHHh-CCEEEEEECCEEEEEcCHHHHHh
Confidence 47999999999999875 99999999999999999988754
No 340
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0015 Score=43.84 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=39.8
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhh-cCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEAL-CTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
...+++.+.+++++||+-..+..+ .|++.+|-+|+++..|.+ ++...+.
T Consensus 187 i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le 236 (251)
T COG0396 187 INALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELE 236 (251)
T ss_pred HHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHHHHH
Confidence 445666799999999988877664 399999999999999999 7665443
No 341
>PTZ00243 ABC transporter; Provisional
Probab=97.17 E-value=0.0014 Score=53.79 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=35.8
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.|+|+|++||+++.+. .||++++|++|++...|+.+++..
T Consensus 831 ~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 831 AGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHHHh
Confidence 4789999999999985 599999999999999999988753
No 342
>PLN03232 ABC transporter C family member; Provisional
Probab=97.17 E-value=0.0011 Score=54.19 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=35.5
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.++|+|++||+++.+. .||++++|++|++...|+.+++..
T Consensus 789 ~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 789 KGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred cCCEEEEEECChhhHH-hCCEEEEEeCCEEEEecCHHHHHh
Confidence 5789999999998765 599999999999999999988753
No 343
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.16 E-value=0.0009 Score=54.81 Aligned_cols=40 Identities=23% Similarity=0.196 Sum_probs=35.8
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.++|+|++||+++.+.. ||++++|++|++...|+.+++..
T Consensus 811 ~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 811 KNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred cCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHHh
Confidence 46899999999998876 99999999999999999888753
No 344
>KOG0055|consensus
Probab=97.13 E-value=0.00097 Score=53.26 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=40.6
Q ss_pred hccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 12 NSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 12 ~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
....|+|.|++.|.+..+.. ||.|+++++|++.+.|+.+++...-+
T Consensus 1171 ~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~~~~G 1216 (1228)
T KOG0055|consen 1171 RAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDELLAKRG 1216 (1228)
T ss_pred HhhcCCcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHHHhCCC
Confidence 34468999999999999987 99999999999999999999987433
No 345
>PLN03130 ABC transporter C family member; Provisional
Probab=97.11 E-value=0.0014 Score=54.05 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=35.5
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.++|+|++||+++.+. .||++++|++|++...|+.+++..
T Consensus 789 ~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 789 RGKTRVLVTNQLHFLS-QVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred cCCEEEEEECCHhHHH-hCCEEEEEeCCEEEEeCCHHHHHh
Confidence 4789999999998765 599999999999999999988753
No 346
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.05 E-value=0.00063 Score=44.76 Aligned_cols=41 Identities=5% Similarity=-0.057 Sum_probs=29.7
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEe-CCEEeEecC
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMV-NGRLSCLGS 49 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~-~G~i~~~g~ 49 (97)
.+.+..+ .|.++|++||+++++. .||++++|+ ++..+.+|.
T Consensus 179 ~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 179 IIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence 3445443 4889999999999986 599999994 444454443
No 347
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.05 E-value=0.0011 Score=43.33 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=27.0
Q ss_pred hhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239 10 RKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 10 ~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 43 (97)
..+.+.+.|+|++||+++.+. .||++++|++|.
T Consensus 186 ~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 186 KFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred HHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 344455899999999999985 699999998873
No 348
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.97 E-value=0.0021 Score=52.61 Aligned_cols=33 Identities=9% Similarity=-0.061 Sum_probs=27.0
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNG 42 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G 42 (97)
+.+..+ .|+|+|++||+++.+ ..||++++|++|
T Consensus 622 L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 622 INNLKGNENRITIIIAHRLSTI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence 444443 479999999999987 579999999886
No 349
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.97 E-value=0.0021 Score=48.39 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=32.2
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEe-CCEEeE-ecChHHH
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMV-NGRLSC-LGSVQHL 53 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~-~G~i~~-~g~~~~l 53 (97)
+.|+|++|||.+++..+||+++++. +|++.. .|+.++.
T Consensus 487 ~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 487 QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 5699999999999999999999997 798765 4666665
No 350
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.91 E-value=0.0015 Score=42.82 Aligned_cols=31 Identities=10% Similarity=0.001 Sum_probs=25.7
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEE
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVM 39 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l 39 (97)
+.+..++|.|+|++||+++.+..+||+++.+
T Consensus 192 l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 192 IAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 4444455899999999999999999999876
No 351
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.85 E-value=0.003 Score=51.72 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=35.3
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeC----CEEe-EecChHHHHH
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVN----GRLS-CLGSVQHLKN 55 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~----G~i~-~~g~~~~l~~ 55 (97)
.++|+|+++|.+..+.. ||++++|++ |+++ +.|+.+++..
T Consensus 1408 ~~~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1408 ADKTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred CCCEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 57999999999998765 999999999 8855 7999999875
No 352
>PRK13409 putative ATPase RIL; Provisional
Probab=96.80 E-value=0.0025 Score=47.76 Aligned_cols=34 Identities=9% Similarity=-0.027 Sum_probs=28.9
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNG 42 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 42 (97)
.+..+.+ |.++|++||+++++..+||++++|.++
T Consensus 254 ~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 254 LIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 3455555 899999999999999999999999763
No 353
>KOG0061|consensus
Probab=96.77 E-value=0.0015 Score=49.18 Aligned_cols=55 Identities=16% Similarity=0.142 Sum_probs=46.8
Q ss_pred hhhhhhhhhhccCCcEEEEEeCCH-HHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 3 IDRCQHSRKNSQTWISFGLFYSSL-EECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 3 ~~~~~~~~~~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
..-++.++++.++|+|||++-|.+ .++..+.|++++|.+|++++.|+++++.+-+
T Consensus 207 ~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff 262 (613)
T KOG0061|consen 207 LQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFF 262 (613)
T ss_pred HHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHH
Confidence 345677888888899999999998 4677889999999999999999999876644
No 354
>KOG0058|consensus
Probab=96.77 E-value=0.0032 Score=47.93 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=38.6
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
+++|+|++.|.+..+.. +|+|+++++|++.+.|+.+++....
T Consensus 652 ~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 652 QGRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEMGTHDELLSKP 693 (716)
T ss_pred cCCeEEEEehhhhHhhh-ccEEEEEcCCeEEecccHHHHhhCc
Confidence 46999999999999987 9999999999999999999987755
No 355
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=96.76 E-value=0.0032 Score=46.66 Aligned_cols=34 Identities=6% Similarity=-0.027 Sum_probs=28.9
Q ss_pred cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 14 QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
..++|+|++||+++.+ ..||++++|++|++...-
T Consensus 519 ~~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~~~~ 552 (555)
T TIGR01194 519 RQGKTIIIISHDDQYF-ELADQIIKLAAGCIVKDT 552 (555)
T ss_pred hCCCEEEEEeccHHHH-HhCCEEEEEECCEEEEec
Confidence 4579999999999866 469999999999987643
No 356
>KOG0054|consensus
Probab=96.66 E-value=0.0036 Score=50.83 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=39.7
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
.++|+|.+-|.++.+.. ||||++|++|++.+.|+|+++.++..
T Consensus 1323 ~dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~Ll~~~~ 1365 (1381)
T KOG0054|consen 1323 KDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAELLSDKD 1365 (1381)
T ss_pred cCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHHHhCCc
Confidence 47999999999999998 99999999999999999999987654
No 357
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.011 Score=39.28 Aligned_cols=49 Identities=27% Similarity=0.286 Sum_probs=37.4
Q ss_pred hhccCCcEEEEEeCCHHHHHhhcCeEEEEeC--CEEeEecChHHHHHhhcCc
Q psy18239 11 KNSQTWISFGLFYSSLEECEALCTRLAVMVN--GRLSCLGSVQHLKNKFAVG 60 (97)
Q Consensus 11 ~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~--G~i~~~g~~~~l~~~~~~~ 60 (97)
--++.|+.++++||+++++.-+++++++|.. |+++..-+++ ...++...
T Consensus 178 lw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d-f~rR~aag 228 (259)
T COG4525 178 LWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD-FARRYAAG 228 (259)
T ss_pred HHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC-HHHHhhcC
Confidence 3445699999999999999999999999965 4787776665 33444433
No 358
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=96.56 E-value=0.0085 Score=46.54 Aligned_cols=51 Identities=8% Similarity=0.041 Sum_probs=42.9
Q ss_pred hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHHhh
Q psy18239 6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~ 57 (97)
+..++.++..|-|+|+|.||.+.+.. ||+++=| ..|.+++.|++++++...
T Consensus 523 i~tL~~LRDlGNTviVVEHDedti~~-AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 523 IETLKRLRDLGNTVIVVEHDEDTIRA-ADHIIDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred HHHHHHHHhcCCeEEEEecCHHHHhh-cCEEEeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 44577788889999999999998876 9999876 567899999999998755
No 359
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.54 E-value=0.0046 Score=38.90 Aligned_cols=27 Identities=7% Similarity=-0.170 Sum_probs=23.4
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~ 43 (97)
+.|+|++||+++.. .+||++++|+++.
T Consensus 138 ~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 138 GITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred CCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 68999999999865 5899999998764
No 360
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.49 E-value=0.003 Score=40.92 Aligned_cols=39 Identities=8% Similarity=-0.182 Sum_probs=31.0
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
+..+.+.+.++|++||+ .++..+||++..|.+|.+...+
T Consensus 134 l~~l~~~~~~vi~~tH~-~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 134 LEELLERGALVIATTHY-GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHhcCCEEEEECCH-HHHHHHHhcCCCeEEEEEEEec
Confidence 44455558899999998 4567889999999999987663
No 361
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.40 E-value=0.0067 Score=44.85 Aligned_cols=32 Identities=25% Similarity=0.050 Sum_probs=28.0
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEe
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCL 47 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 47 (97)
.++|+|++||+++.+. .||++++|++|++...
T Consensus 499 ~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 499 MGKTIFAISHDDHYFI-HADRLLEMRNGQLSEL 530 (547)
T ss_pred CCCEEEEEEechHHHH-hCCEEEEEECCEEEEe
Confidence 4799999999997654 6999999999998866
No 362
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.38 E-value=0.0056 Score=39.47 Aligned_cols=30 Identities=7% Similarity=-0.066 Sum_probs=23.5
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEE
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVM 39 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l 39 (97)
+.+..+++.++|++||+++.+ .+||++++|
T Consensus 177 l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 177 LLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred HHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 445444589999999999976 579999875
No 363
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.014 Score=42.41 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=38.5
Q ss_pred cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 14 QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
..|.|.+++-|.+..+.. +|.+++|++|++++.|+..++...
T Consensus 446 ~~~rttlviahrlsti~~-adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 446 SAGRTTLVIAHRLSTIID-ADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred hCCCeEEEEeehhhhccC-CceEEEeeCCEEEecCcHHHHHHc
Confidence 357899999999999987 999999999999999999998765
No 364
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.15 E-value=0.01 Score=40.15 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=31.0
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
+.++|+|||+.+++....++++.+.+|+++..|
T Consensus 223 ~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 223 APALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred CceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 788999999999999999999999999998776
No 365
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=96.09 E-value=0.013 Score=39.11 Aligned_cols=34 Identities=12% Similarity=-0.012 Sum_probs=25.7
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNG 42 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 42 (97)
.+.+..+.|.++|++||+.+.+ .+||++++|.+-
T Consensus 201 ~i~~~~~~g~~vi~isH~~~~~-~~~d~i~~~~~~ 234 (247)
T cd03275 201 YIREQAGPNFQFIVISLKEEFF-SKADALVGVYRD 234 (247)
T ss_pred HHHHhccCCcEEEEEECCHHHH-hhCCeEEEEEec
Confidence 3445555588999999997655 679999988653
No 366
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.89 E-value=0.011 Score=38.22 Aligned_cols=32 Identities=6% Similarity=-0.279 Sum_probs=26.2
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVM 39 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l 39 (97)
.+.+..++|.|+|++||+......+|++++.+
T Consensus 167 ~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 167 AMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 34445556889999999999999999999876
No 367
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.80 E-value=0.019 Score=37.40 Aligned_cols=34 Identities=3% Similarity=-0.053 Sum_probs=25.9
Q ss_pred hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239 8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNG 42 (97)
Q Consensus 8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G 42 (97)
.+.++.++ +.++|++||+++.+. .||+++.|.+.
T Consensus 164 ~l~~~~~~~~~~iiiitH~~~~~~-~~d~i~~l~~~ 198 (204)
T cd03240 164 IIEERKSQKNFQLIVITHDEELVD-AADHIYRVEKD 198 (204)
T ss_pred HHHHHHhccCCEEEEEEecHHHHh-hCCEEEEEeeC
Confidence 34455444 789999999998765 69999988654
No 368
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.71 E-value=0.015 Score=37.65 Aligned_cols=31 Identities=6% Similarity=-0.238 Sum_probs=24.3
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEE
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVM 39 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l 39 (97)
+.+..+++.|+|++||+++++.....|++.+
T Consensus 172 l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 172 LAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 4444455789999999999999977777665
No 369
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.68 E-value=0.021 Score=42.54 Aligned_cols=43 Identities=9% Similarity=-0.015 Sum_probs=33.3
Q ss_pred hhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEe-cChHH
Q psy18239 10 RKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCL-GSVQH 52 (97)
Q Consensus 10 ~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~ 52 (97)
..+.+...|+|+||||-.++...|++|+-++.|++..+ |..+.
T Consensus 194 ~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 194 DYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSS 237 (530)
T ss_pred HHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHH
Confidence 33444323999999999999999999999999987665 44444
No 370
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=95.66 E-value=0.017 Score=44.96 Aligned_cols=50 Identities=6% Similarity=0.037 Sum_probs=41.5
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHHhh
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~ 57 (97)
..+..+...|-|+|++.|+++.+.. ||.|+=| ..|.+++.|+|+++.+..
T Consensus 866 ~VL~rLvd~GnTViVIEHNLdVIk~-AD~IIDLGPeGG~~GG~iva~GTPeeva~~~ 921 (935)
T COG0178 866 EVLHRLVDKGNTVIVIEHNLDVIKT-ADWIIDLGPEGGDGGGEIVASGTPEEVAKVK 921 (935)
T ss_pred HHHHHHHhCCCEEEEEecccceEee-cCEEEEcCCCCCCCCceEEEecCHHHHHhCc
Confidence 3455677789999999999998876 9999877 467899999999998743
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.34 E-value=0.035 Score=36.01 Aligned_cols=31 Identities=13% Similarity=-0.011 Sum_probs=23.8
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVN 41 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 41 (97)
+.++.+ +.++|++||+++.+ .+||+++.+.+
T Consensus 160 l~~~~~-~~tiIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 160 LKEFSK-ETQFIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred HHHhcc-CCEEEEEECCHHHH-hhcceEEEEEe
Confidence 333433 58999999999986 57999998864
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.27 E-value=0.078 Score=39.58 Aligned_cols=43 Identities=9% Similarity=-0.041 Sum_probs=34.9
Q ss_pred hccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE-ecChHHHHH
Q psy18239 12 NSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSC-LGSVQHLKN 55 (97)
Q Consensus 12 ~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~l~~ 55 (97)
+.....|+|+||||..++..+|++++.+.+ .+.. .|..++..+
T Consensus 482 L~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 482 LLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred HHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 555678999999999999999999999987 5544 477776554
No 373
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=95.24 E-value=0.016 Score=38.07 Aligned_cols=36 Identities=11% Similarity=-0.020 Sum_probs=26.5
Q ss_pred hhhhhccC-C-cEEEEEeCCHHHHHhhcC--eEEEEeCCE
Q psy18239 8 HSRKNSQT-W-ISFGLFYSSLEECEALCT--RLAVMVNGR 43 (97)
Q Consensus 8 ~~~~~~~~-~-~tiii~tH~~~~~~~~~d--~i~~l~~G~ 43 (97)
.+....+. | .++|++||++.+...++| ++++|.+|+
T Consensus 172 ~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 172 MLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred HHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 34444443 4 579999999988888887 577888886
No 374
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.12 E-value=0.026 Score=37.31 Aligned_cols=34 Identities=15% Similarity=-0.014 Sum_probs=28.9
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS 49 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 49 (97)
.+.+++++||+ .++..+||++..+.+|++...+.
T Consensus 142 ~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 142 IKCFCLFATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 47899999995 77888999999999999877664
No 375
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.10 E-value=0.039 Score=43.97 Aligned_cols=35 Identities=14% Similarity=-0.005 Sum_probs=29.4
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNG 42 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 42 (97)
.+..+...|.+|+|+||+++....+|+++.++..|
T Consensus 1002 ~l~~l~~~g~~i~iisH~~~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1002 ILDAIREGSKMIGIISHVPEFRERIPHRILVKKTN 1036 (1042)
T ss_pred HHHHHHhCCCEEEEEeCcHHHHHhhCCEEEEEECC
Confidence 34555556899999999999999999999999754
No 376
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.91 E-value=0.028 Score=38.39 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=28.3
Q ss_pred cCCcEEEEEeCCHHH--H-----------HhhcCeEEEEeCCEEeEecChHHH
Q psy18239 14 QTWISFGLFYSSLEE--C-----------EALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 14 ~~~~tiii~tH~~~~--~-----------~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
+.|.++|+++|+... + ..+++|+++|++|+ ..|++.++
T Consensus 217 ~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 217 HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 368999999997654 4 36789999999876 55655443
No 377
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.86 E-value=0.042 Score=41.07 Aligned_cols=33 Identities=3% Similarity=-0.249 Sum_probs=26.6
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 43 (97)
+..+.+ +.+||++||++..+. +||+++++.+|.
T Consensus 487 l~~l~~-~~~vi~iTH~~~~~~-~ad~~~~l~k~~ 519 (563)
T TIGR00634 487 LAQLSE-RHQVLCVTHLPQVAA-HADAHFKVEKEG 519 (563)
T ss_pred HHHHhc-CCEEEEEEChHHHHH-hcCeEEEEEEcc
Confidence 444443 789999999998875 799999998764
No 378
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=94.78 E-value=0.061 Score=34.35 Aligned_cols=32 Identities=13% Similarity=0.015 Sum_probs=25.0
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVN 41 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 41 (97)
+.+..+.|.++|++||+++.+. .+|+++.+.+
T Consensus 141 L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 141 IKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred HHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 4444445789999999998765 7999998865
No 379
>KOG0056|consensus
Probab=94.72 E-value=0.062 Score=40.25 Aligned_cols=48 Identities=15% Similarity=0.073 Sum_probs=39.9
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
+..+.. ++|-|++.|.+..+-. +|.++++++|++++.|..+++..+.+
T Consensus 717 L~rlca-~RTtIVvAHRLSTivn-AD~ILvi~~G~IvErG~HeeLl~rdg 764 (790)
T KOG0056|consen 717 LARLCA-NRTTIVVAHRLSTIVN-ADLILVISNGRIVERGRHEELLKRDG 764 (790)
T ss_pred HHHHhc-CCceEEEeeeehheec-ccEEEEEeCCeEeecCcHHHHHhccC
Confidence 344443 5788999999999887 99999999999999999999876533
No 380
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.59 E-value=0.047 Score=35.39 Aligned_cols=32 Identities=6% Similarity=-0.340 Sum_probs=24.5
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVN 41 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 41 (97)
.+.+..+++.|+|++||+++++.. |+++-+..
T Consensus 169 ~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 169 LIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred HHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence 344444568999999999999887 88877743
No 381
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.33 E-value=0.07 Score=36.26 Aligned_cols=27 Identities=4% Similarity=-0.188 Sum_probs=23.2
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~ 43 (97)
+.++|++||++.. ..+||+++.+.+|.
T Consensus 223 ~~tii~isH~~~~-~~~~d~~~~l~~~~ 249 (276)
T cd03241 223 SHQVLCITHLPQV-AAMADNHFLVEKEV 249 (276)
T ss_pred CCEEEEEechHHH-HHhcCcEEEEEEec
Confidence 6899999999985 46899999998764
No 382
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=94.27 E-value=0.037 Score=35.89 Aligned_cols=27 Identities=4% Similarity=-0.146 Sum_probs=23.2
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~ 43 (97)
+.+++++||+++++..+ |+|.+|..++
T Consensus 166 ~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 166 RQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred cEEEEEECCcccccccc-cceeEEEecC
Confidence 46899999999999985 9999998754
No 383
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.22 E-value=0.079 Score=38.65 Aligned_cols=34 Identities=6% Similarity=0.092 Sum_probs=31.0
Q ss_pred EEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 18 SFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 18 tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
||++.+||+++ .+||++..+.+|+++..++.++.
T Consensus 308 TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 308 TVLVDGDDMNE--PIADTVRGILDGHFVLDRQLANK 341 (438)
T ss_pred EEEEECCCCCc--hhhhhEEEecCEEEEEeccHHHC
Confidence 99999999995 88999999999999999888774
No 384
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.05 E-value=0.084 Score=34.36 Aligned_cols=32 Identities=3% Similarity=0.051 Sum_probs=28.7
Q ss_pred ccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239 13 SQTWISFGLFYSSLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 13 ~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 44 (97)
+++..+++.+|||.+++-+++|+++-+..|.+
T Consensus 181 ~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 181 REQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 35679999999999999999999999998864
No 385
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=94.04 E-value=0.14 Score=33.58 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=23.2
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVN 41 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 41 (97)
+.+.. ++.++|++||+. ++..+||++++|..
T Consensus 174 l~~~~-~~~~~iivs~~~-~~~~~~d~v~~~~~ 204 (212)
T cd03274 174 IKERT-KNAQFIVISLRN-NMFELADRLVGIYK 204 (212)
T ss_pred HHHHc-CCCEEEEEECcH-HHHHhCCEEEEEEe
Confidence 44443 457899999985 56778999999865
No 386
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.95 E-value=0.029 Score=36.26 Aligned_cols=42 Identities=10% Similarity=-0.138 Sum_probs=31.7
Q ss_pred hhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHH
Q psy18239 10 RKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQH 52 (97)
Q Consensus 10 ~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 52 (97)
..+.+.+.++|++||+.+.+. .++++..+..+++...+...+
T Consensus 135 ~~l~~~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 135 EHLLEKGCRTLFATHFHELAD-LPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHhcCCeEEEECChHHHHH-HhhcCCCeEEEEEEEEecCCe
Confidence 344455889999999987665 588888888888887776533
No 387
>KOG0062|consensus
Probab=93.68 E-value=0.12 Score=38.53 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=31.4
Q ss_pred hhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE
Q psy18239 11 KNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSC 46 (97)
Q Consensus 11 ~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 46 (97)
.+..-+..|+|+|||.+++...|+.+++.++|++..
T Consensus 524 Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 524 ALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 344446789999999999999999999999999876
No 388
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=93.53 E-value=0.18 Score=33.25 Aligned_cols=30 Identities=10% Similarity=-0.107 Sum_probs=21.7
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMV 40 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~ 40 (97)
+.+..+ +.++|++||+.+ +..+||++++|.
T Consensus 205 l~~~~~-~~~ii~~~h~~~-~~~~~d~i~~l~ 234 (243)
T cd03272 205 IKELSD-GAQFITTTFRPE-LLEVADKFYGVK 234 (243)
T ss_pred HHHHhC-CCEEEEEecCHH-HHhhCCEEEEEE
Confidence 444433 678888888855 678999998874
No 389
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=93.52 E-value=0.14 Score=39.05 Aligned_cols=27 Identities=11% Similarity=-0.149 Sum_probs=23.1
Q ss_pred cCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239 14 QTWISFGLFYSSLEECEALCTRLAVMVN 41 (97)
Q Consensus 14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~ 41 (97)
+.+.|+|++||+++.+ .+||++++|+.
T Consensus 627 ~~~~tvI~isH~~~~~-~~~d~il~l~~ 653 (659)
T TIGR00954 627 EFGITLFSVSHRKSLW-KYHEYLLYMDG 653 (659)
T ss_pred HcCCEEEEEeCchHHH-HhCCEEEEEeC
Confidence 3489999999999986 56999999963
No 390
>KOG2355|consensus
Probab=93.51 E-value=0.13 Score=34.55 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=36.8
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHH
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQH 52 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 52 (97)
..+++-.+ +|.||+..||-.+=++.++.+++.|..|++...-+.+.
T Consensus 188 eFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~ 234 (291)
T KOG2355|consen 188 EFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQK 234 (291)
T ss_pred HHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccch
Confidence 33444444 59999999999999999999999999999987544444
No 391
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=93.48 E-value=0.16 Score=31.74 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=21.8
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMVN 41 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~~ 41 (97)
+.++|++||+.+.+. .+|+++.|..
T Consensus 131 ~~~vii~TH~~~~~~-~~d~~~~l~~ 155 (162)
T cd03227 131 GAQVIVITHLPELAE-LADKLIHIKK 155 (162)
T ss_pred CCEEEEEcCCHHHHH-hhhhEEEEEE
Confidence 789999999999876 5899998864
No 392
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=93.15 E-value=0.029 Score=40.79 Aligned_cols=38 Identities=21% Similarity=0.011 Sum_probs=31.9
Q ss_pred hhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 10 RKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 10 ~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
-.+++.|+||+.+|||-..... +||++.+++|++....
T Consensus 493 p~LK~qGKTI~aIsHDd~YF~~-ADrll~~~~G~~~e~t 530 (546)
T COG4615 493 PLLKEQGKTIFAISHDDHYFIH-ADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHhCCeEEEEecCchhhhh-HHHHHHHhcCceeecc
Confidence 3456679999999999988764 9999999999987754
No 393
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=93.05 E-value=0.066 Score=35.25 Aligned_cols=43 Identities=9% Similarity=-0.140 Sum_probs=31.2
Q ss_pred hhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 10 RKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 10 ~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
..+.+. +.++|++||+. ++..+++++..+.+|++...+..+++
T Consensus 136 ~~l~~~~~~~vi~~TH~~-~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 136 EYLHEKIGAKTLFATHYH-ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHHhccCCcEEEEeCcH-HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 334444 78999999996 45668898877788888776655443
No 394
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=92.97 E-value=0.16 Score=39.77 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=32.6
Q ss_pred hhhhhccCCcEEEEEeCCHHHHH---------hhcCeEEEEeCCEEeEec
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECE---------ALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~---------~~~d~i~~l~~G~i~~~g 48 (97)
.++..++.|.+++++||+++++. ..|++.++|.+|+....+
T Consensus 677 ~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~ 726 (818)
T PRK13830 677 WLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPG 726 (818)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccc
Confidence 35556667899999999999986 579999999998875444
No 395
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=92.49 E-value=0.31 Score=32.53 Aligned_cols=25 Identities=8% Similarity=-0.271 Sum_probs=19.6
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEe
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMV 40 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~ 40 (97)
+|.++|++||+. ++...||+++-+.
T Consensus 218 ~g~~ii~iSH~~-~~~~~~d~v~~~~ 242 (251)
T cd03273 218 KGSQFIVVSLKE-GMFNNANVLFRTR 242 (251)
T ss_pred CCCEEEEEECCH-HHHHhCCEEEEEE
Confidence 478999999995 5555799997653
No 396
>PRK10869 recombination and repair protein; Provisional
Probab=92.41 E-value=0.27 Score=36.88 Aligned_cols=33 Identities=3% Similarity=-0.186 Sum_probs=25.8
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNG 42 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 42 (97)
.+..+.+ +.++|++||++..+ .+||+.+.+.++
T Consensus 476 ~l~~l~~-~~qvi~iTH~~~~~-~~ad~~~~v~k~ 508 (553)
T PRK10869 476 LLRQLGE-STQVMCVTHLPQVA-GCGHQHFFVSKE 508 (553)
T ss_pred HHHHHhc-CCEEEEEecCHHHH-HhCCEEEEEecc
Confidence 3444543 58999999999876 689999999874
No 397
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=91.56 E-value=0.34 Score=35.68 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEE
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVM 39 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l 39 (97)
.++|+|++||+++.+. .||++++|
T Consensus 506 ~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 506 QGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred CCCEEEEEecCHHHHH-hCCEEEeC
Confidence 4799999999998875 59999875
No 398
>PRK03918 chromosome segregation protein; Provisional
Probab=91.06 E-value=0.41 Score=37.35 Aligned_cols=28 Identities=4% Similarity=-0.173 Sum_probs=22.6
Q ss_pred ccCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239 13 SQTWISFGLFYSSLEECEALCTRLAVMVN 41 (97)
Q Consensus 13 ~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 41 (97)
...+.++|++||+++. ...||+++.|.+
T Consensus 841 ~~~~~~iiiith~~~~-~~~~d~~~~l~~ 868 (880)
T PRK03918 841 LRKIPQVIIVSHDEEL-KDAADYVIRVSL 868 (880)
T ss_pred HhcCCEEEEEECCHHH-HHhCCeEEEEEe
Confidence 3446799999999875 567999999974
No 399
>PRK13695 putative NTPase; Provisional
Probab=90.93 E-value=0.23 Score=31.28 Aligned_cols=38 Identities=8% Similarity=-0.032 Sum_probs=29.4
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEe
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCL 47 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 47 (97)
+....+.+.++|+++|+. .+..++|++..+.+|++...
T Consensus 119 l~~~~~~~~~~i~v~h~~-~~~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 119 VEEVLDSEKPVIATLHRR-SVHPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred HHHHHhCCCeEEEEECch-hhHHHHHHHhccCCcEEEEE
Confidence 334445689999999984 55678999999999987654
No 400
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=90.39 E-value=0.22 Score=31.29 Aligned_cols=33 Identities=9% Similarity=-0.194 Sum_probs=25.2
Q ss_pred hhhhccCCcEEEEEeCCHHH---------HHhhcCeEEEEeC
Q psy18239 9 SRKNSQTWISFGLFYSSLEE---------CEALCTRLAVMVN 41 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~---------~~~~~d~i~~l~~ 41 (97)
+..+.+.|.++++++|+... +..+||.++.|+.
T Consensus 123 ~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 123 LFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred HHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEEE
Confidence 34455568999999998765 6788898888863
No 401
>KOG0059|consensus
Probab=89.62 E-value=0.78 Score=36.32 Aligned_cols=56 Identities=23% Similarity=0.406 Sum_probs=45.0
Q ss_pred ccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEEEeCCCchhHHHHHHHhhhcccee
Q psy18239 13 SQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLKGNTR 88 (97)
Q Consensus 13 ~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (97)
.+.+++|++ +||+++|.+|++. ++.-+.+..+..|.+.+.. .+..++.+..|+..+
T Consensus 4 ~k~~R~i~~-----------~Dri~i~s~g~l~---s~~~lk~~~g~gy~l~l~~------~~~~~~~~~~p~~~~ 59 (885)
T KOG0059|consen 4 RKEGRTIIL-----------GDRIVIMSHGKLK---SSLFLKRKLGSGYHLTLVL------QVTLFIQQHIPDARL 59 (885)
T ss_pred cccCCEEEE-----------ecceeheeCCeec---cchHHHHhhCCCceEEeHH------HHHHHHHhhCcccee
Confidence 345788888 9999999999988 7777778888888887776 667777888887654
No 402
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=88.79 E-value=0.29 Score=31.48 Aligned_cols=29 Identities=3% Similarity=-0.247 Sum_probs=20.9
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEE
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLA 37 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~ 37 (97)
.+.+..+.+.++|++||+...+.. ||.-.
T Consensus 169 ~l~~~~~~~~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 169 KIQEHRAKGGAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred HHHHHHHcCCEEEEEeCCchhccc-cchhh
Confidence 344444568999999999988765 77643
No 403
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.67 E-value=0.62 Score=34.49 Aligned_cols=29 Identities=14% Similarity=0.005 Sum_probs=22.9
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeC-CEE
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVN-GRL 44 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~-G~i 44 (97)
.+.++|++||+.... ..+|++++|.+ |+.
T Consensus 526 ~~~~iiiish~~~~~-~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 526 KDTNVFVISHKDHDP-QKFDRHLKMEKVGRF 555 (562)
T ss_pred CCCeEEEEECchhch-hhhhcEEEEEEECCe
Confidence 478999999997655 56899999976 543
No 404
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=88.54 E-value=0.3 Score=31.29 Aligned_cols=24 Identities=8% Similarity=-0.172 Sum_probs=18.6
Q ss_pred hccCCcEEEEEeCCHHHHHhhcCeE
Q psy18239 12 NSQTWISFGLFYSSLEECEALCTRL 36 (97)
Q Consensus 12 ~~~~~~tiii~tH~~~~~~~~~d~i 36 (97)
..+.+.|+|++||+++.+.. +|.+
T Consensus 169 ~~~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 169 KANSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred HHhCCCEEEEEeCCccccch-hhee
Confidence 33468999999999998776 6654
No 405
>KOG0065|consensus
Probab=87.71 E-value=0.4 Score=39.46 Aligned_cols=50 Identities=12% Similarity=0.018 Sum_probs=39.8
Q ss_pred hhhhhhhhhccCCcEEEEEeCCHH-HHHhhcCeEEEEeCC-EEeEecChHHH
Q psy18239 4 DRCQHSRKNSQTWISFGLFYSSLE-ECEALCTRLAVMVNG-RLSCLGSVQHL 53 (97)
Q Consensus 4 ~~~~~~~~~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G-~i~~~g~~~~l 53 (97)
..++.++++.+.|.||+.+-|.+. ++.+..|++++|++| +.++.|+..+-
T Consensus 968 ~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen 968 IVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence 346678888889999999999985 355679999999655 78888877663
No 406
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=87.44 E-value=1.2 Score=28.87 Aligned_cols=30 Identities=10% Similarity=-0.159 Sum_probs=21.1
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhh--cCeEEE
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEAL--CTRLAV 38 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~--~d~i~~ 38 (97)
+..+.+.+.++|++||+++.+..+ .+++..
T Consensus 131 l~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~ 162 (199)
T cd03283 131 LKFLKNKNTIGIISTHDLELADLLDLDSAVRN 162 (199)
T ss_pred HHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEE
Confidence 344445589999999999988775 344433
No 407
>PRK02224 chromosome segregation protein; Provisional
Probab=86.73 E-value=1.3 Score=34.81 Aligned_cols=33 Identities=6% Similarity=-0.132 Sum_probs=24.7
Q ss_pred hhhccCC-cEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239 10 RKNSQTW-ISFGLFYSSLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 10 ~~~~~~~-~tiii~tH~~~~~~~~~d~i~~l~~G~ 43 (97)
..+...| .+||++||+...+. .||+++.+.+..
T Consensus 837 ~~~~~~~~~qviiish~~~~~~-~ad~~~~~~~~~ 870 (880)
T PRK02224 837 ESMRRLGVEQIVVVSHDDELVG-AADDLVRVEKDP 870 (880)
T ss_pred HHHHhcCCCeEEEEECChHHHH-hcCeeEEeecCC
Confidence 3444444 47999999999886 599999997543
No 408
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=85.72 E-value=0.73 Score=29.51 Aligned_cols=28 Identities=11% Similarity=-0.336 Sum_probs=19.1
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEE
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAV 38 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~ 38 (97)
+.+..++|.|+|++||+...+. |++++.
T Consensus 170 l~~~~~~~~tii~~sH~~~~~~--~~~~~~ 197 (198)
T TIGR01189 170 LRAHLARGGIVLLTTHQDLGLV--EARELR 197 (198)
T ss_pred HHHHHhCCCEEEEEEccccccc--ceEEee
Confidence 4444456889999999986543 466543
No 409
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=85.21 E-value=1.6 Score=32.64 Aligned_cols=34 Identities=9% Similarity=-0.014 Sum_probs=28.8
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMV 40 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~ 40 (97)
...+++.+.+++++++.||+..+..++|-+.++-
T Consensus 254 r~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 254 RVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 3455666668999999999999999999998885
No 410
>KOG0927|consensus
Probab=84.16 E-value=1.6 Score=33.02 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=33.2
Q ss_pred hccCCc-EEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHH
Q psy18239 12 NSQTWI-SFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHL 53 (97)
Q Consensus 12 ~~~~~~-tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l 53 (97)
+.+... ++++++|+-+.+..+|.+|+-+..++.. +.|+.+..
T Consensus 264 L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 264 LAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred HHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHH
Confidence 444444 8999999999999999999999999854 55555554
No 411
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=83.82 E-value=0.74 Score=30.06 Aligned_cols=33 Identities=12% Similarity=-0.044 Sum_probs=24.3
Q ss_pred hhhhhccCCcEEEEEeCCH---------HHHHhhcCeEEEEe
Q psy18239 8 HSRKNSQTWISFGLFYSSL---------EECEALCTRLAVMV 40 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~---------~~~~~~~d~i~~l~ 40 (97)
.+..+++.+.|+++++|.. ..+..+||.+++|+
T Consensus 136 l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 136 FYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred HHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 3444566789999999952 33677889998884
No 412
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=83.81 E-value=0.94 Score=33.39 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=24.5
Q ss_pred hhhhccCCcEEEEEeCCHHH---------HHhhcCeEEEEe
Q psy18239 9 SRKNSQTWISFGLFYSSLEE---------CEALCTRLAVMV 40 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~---------~~~~~d~i~~l~ 40 (97)
...+++.|.|+|+++|+.+. ...+||.++.|+
T Consensus 150 i~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 150 VARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 44456679999999998764 266889998886
No 413
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=83.46 E-value=1 Score=28.75 Aligned_cols=35 Identities=11% Similarity=-0.180 Sum_probs=22.8
Q ss_pred hhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe
Q psy18239 10 RKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLS 45 (97)
Q Consensus 10 ~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 45 (97)
+.+.+ .+.+++++||+++ +..+++...-+..+.+.
T Consensus 105 ~~l~~~~~~~iii~TH~~~-l~~~~~~~~~v~~~~~~ 140 (185)
T smart00534 105 EYLLEKIGALTLFATHYHE-LTKLADEHPGVRNLHMS 140 (185)
T ss_pred HHHHhcCCCeEEEEecHHH-HHHHhhcCccceEEEEE
Confidence 33444 3789999999995 66778764444444443
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=82.52 E-value=1.6 Score=28.56 Aligned_cols=26 Identities=4% Similarity=-0.286 Sum_probs=20.1
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcC
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCT 34 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d 34 (97)
+..+.+.+.++|++||+.+.+..+++
T Consensus 134 l~~l~~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 134 LECLIKKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHHHHhcCCEEEEECChHHHHHHhhc
Confidence 44455568999999999999887654
No 415
>KOG0065|consensus
Probab=81.09 E-value=3.1 Score=34.64 Aligned_cols=54 Identities=13% Similarity=0.026 Sum_probs=40.7
Q ss_pred hhhhhhhhcc-CCcEEEEEeCCH-HHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 5 RCQHSRKNSQ-TWISFGLFYSSL-EECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 5 ~~~~~~~~~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
.+.-++++.+ .+.|.+++-+.. +++-.+.|.+.+|.+|++++.|+.++...-+.
T Consensus 299 iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe 354 (1391)
T KOG0065|consen 299 IIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFE 354 (1391)
T ss_pred HHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHH
Confidence 3444555554 366777766655 66778999999999999999999999876554
No 416
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=79.41 E-value=3.4 Score=33.46 Aligned_cols=34 Identities=9% Similarity=-0.048 Sum_probs=27.5
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVN 41 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 41 (97)
.+..+.+.|++|+|+||......++..++.|-..
T Consensus 999 ~l~~l~~~g~~v~iisH~~~l~~~i~~qi~V~k~ 1032 (1047)
T PRK10246 999 ALDALNASGKTIGVISHVEAMKERIPVQIKVKKI 1032 (1047)
T ss_pred HHHHHHHCCCEEEEEecHHHHHHhccceEEEEEC
Confidence 3555666799999999999988888888888754
No 417
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.53 E-value=3.6 Score=27.85 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=21.9
Q ss_pred EEEEEeCCHHHHHhhc---CeEEEEeCCEE
Q psy18239 18 SFGLFYSSLEECEALC---TRLAVMVNGRL 44 (97)
Q Consensus 18 tiii~tH~~~~~~~~~---d~i~~l~~G~i 44 (97)
.+++++|+...+..+| ++++.+++|++
T Consensus 240 q~ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 240 QTFVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred CEEEEeCCchhccchhccCccEEEEeCcEE
Confidence 5778888888888877 78999999985
No 418
>KOG0927|consensus
Probab=78.42 E-value=1.7 Score=32.95 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=34.4
Q ss_pred hccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHHHH
Q psy18239 12 NSQTWISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHLKN 55 (97)
Q Consensus 12 ~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l~~ 55 (97)
+++-..+++++|||...+.++++++....+|.+. ..|+......
T Consensus 552 iNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~ 596 (614)
T KOG0927|consen 552 INEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKE 596 (614)
T ss_pred HhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHH
Confidence 4555678999999999999999999999888754 4566655433
No 419
>PRK01156 chromosome segregation protein; Provisional
Probab=77.60 E-value=3 Score=32.90 Aligned_cols=23 Identities=4% Similarity=-0.174 Sum_probs=20.1
Q ss_pred cEEEEEeCCHHHHHhhcCeEEEEe
Q psy18239 17 ISFGLFYSSLEECEALCTRLAVMV 40 (97)
Q Consensus 17 ~tiii~tH~~~~~~~~~d~i~~l~ 40 (97)
.++|++||+++.+ .+||+++.+.
T Consensus 861 ~~ii~ish~~~~~-~~~d~ii~~~ 883 (895)
T PRK01156 861 PQVIMISHHRELL-SVADVAYEVK 883 (895)
T ss_pred CeEEEEECchHHH-HhcCeEEEEE
Confidence 4899999999976 5799999886
No 420
>KOG0062|consensus
Probab=74.91 E-value=0.78 Score=34.44 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=35.6
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE-ecChHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSC-LGSVQHL 53 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~l 53 (97)
|+-..+...+.|+|+||||-.++...|.-|+-+++-++-. .|..+.+
T Consensus 236 WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 236 WLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred HHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 3334455556899999999999999999999988777654 4655554
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=73.13 E-value=9.9 Score=27.00 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=23.3
Q ss_pred CcEEEEEeCCHHHHHhhc--CeEEEEeCCEE
Q psy18239 16 WISFGLFYSSLEECEALC--TRLAVMVNGRL 44 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~--d~i~~l~~G~i 44 (97)
+..+++++|+.+.+...+ ++++.+++|++
T Consensus 329 ~~qv~it~~~~~~~~~~~~~~~i~~v~~G~i 359 (361)
T PRK00064 329 GAQVFITTTDLEDLADLLENAKIFHVEQGKI 359 (361)
T ss_pred CCEEEEEcCChhhhhhhhccCcEEEEeCCEE
Confidence 458999999988877664 47889999986
No 422
>KOG0066|consensus
Probab=71.55 E-value=1.4 Score=32.96 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=29.6
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
..|++|||||-.++...|..|+-|++.++.++-
T Consensus 459 kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYr 491 (807)
T KOG0066|consen 459 KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYR 491 (807)
T ss_pred hheeEEEecccchHHHHHHHHhhhhhhhhhhhc
Confidence 579999999999999999999999998887653
No 423
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=70.42 E-value=3 Score=30.66 Aligned_cols=35 Identities=11% Similarity=0.023 Sum_probs=26.3
Q ss_pred hhhh-ccCCcEEEEEeCCHHH--------HHhhcCeEEEEeCCE
Q psy18239 9 SRKN-SQTWISFGLFYSSLEE--------CEALCTRLAVMVNGR 43 (97)
Q Consensus 9 ~~~~-~~~~~tiii~tH~~~~--------~~~~~d~i~~l~~G~ 43 (97)
+..+ ++.|.|+++++|...+ +..++|.++.|+.++
T Consensus 204 L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 204 LMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred HHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 3443 4569999999996554 677899999998655
No 424
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=69.45 E-value=6.2 Score=31.57 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=19.3
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEe
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMV 40 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~ 40 (97)
+.++||+||++..+ .+||+++.+.
T Consensus 1142 ~~~~i~~sh~~~~~-~~~d~~~~~~ 1165 (1179)
T TIGR02168 1142 NTQFIVITHNKGTM-EVADQLYGVT 1165 (1179)
T ss_pred CCEEEEEEcChhHH-HHhhhHeeee
Confidence 47899999999976 5699987553
No 425
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=69.05 E-value=3.7 Score=26.77 Aligned_cols=29 Identities=7% Similarity=-0.141 Sum_probs=20.8
Q ss_pred hccCCcEEEEEeCCHH--------HHHhhcCeEEEEe
Q psy18239 12 NSQTWISFGLFYSSLE--------ECEALCTRLAVMV 40 (97)
Q Consensus 12 ~~~~~~tiii~tH~~~--------~~~~~~d~i~~l~ 40 (97)
+++.+.|+++++|... .+..+||-++.|+
T Consensus 152 l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 152 LNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred HHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 4556999999999543 2455778887776
No 426
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=68.71 E-value=7.9 Score=24.55 Aligned_cols=30 Identities=23% Similarity=0.153 Sum_probs=23.3
Q ss_pred cCCcEEEEEeCCHHH--HHhhcCeEEEEeCCE
Q psy18239 14 QTWISFGLFYSSLEE--CEALCTRLAVMVNGR 43 (97)
Q Consensus 14 ~~~~tiii~tH~~~~--~~~~~d~i~~l~~G~ 43 (97)
+.+.++++.+|.+.+ ...+||.++++..+.
T Consensus 103 ~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~ 134 (188)
T TIGR00152 103 SKLAYVLLDVPLLFENKLRSLCDRVIVVDVSP 134 (188)
T ss_pred cCCCEEEEEchHhhhCCcHHhCCEEEEEECCH
Confidence 345789999999865 677899998887653
No 427
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=68.10 E-value=15 Score=19.82 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=34.6
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCE-EeEecChHHHHHhh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGR-LSCLGSVQHLKNKF 57 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~-i~~~g~~~~l~~~~ 57 (97)
+|.-.++--|.++.++.+.|.++.|-+|+ .+...+.+++.++.
T Consensus 8 NG~~~~lN~~~IE~ie~~PDttItLinGkkyvVkEsveEVi~kI 51 (67)
T COG1582 8 NGREFWLNAHHIETIEAFPDTTITLINGKKYVVKESVEEVINKI 51 (67)
T ss_pred cCcceeeCHHHhhhhhccCCcEEEEEcCcEEEEcccHHHHHHHH
Confidence 57778889999999999999998877775 56677788776653
No 428
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=67.46 E-value=5.3 Score=26.46 Aligned_cols=23 Identities=4% Similarity=-0.174 Sum_probs=18.1
Q ss_pred hhccC-CcEEEEEeCCHHHHHhhc
Q psy18239 11 KNSQT-WISFGLFYSSLEECEALC 33 (97)
Q Consensus 11 ~~~~~-~~tiii~tH~~~~~~~~~ 33 (97)
.+.+. +.+++++||+++.+..++
T Consensus 137 ~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 137 YLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHhcCCcEEEEeccHHHHHHhh
Confidence 33343 789999999999988765
No 429
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=67.41 E-value=4.1 Score=26.29 Aligned_cols=31 Identities=16% Similarity=0.044 Sum_probs=22.5
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVM 39 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l 39 (97)
...+.+.-|...+++|||..++.. ..|++-|
T Consensus 177 VFs~~r~agiPtv~VTHD~~Dvpa-gsrVie~ 207 (213)
T COG4136 177 VFSEVRAAGIPTVQVTHDLQDVPA-GSRVIEM 207 (213)
T ss_pred HHHHHHhcCCCeEEEecccccCCC-CCeeeee
Confidence 344556668999999999999873 5665543
No 430
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=66.53 E-value=7.8 Score=25.43 Aligned_cols=31 Identities=3% Similarity=-0.013 Sum_probs=20.4
Q ss_pred hhhccCCcEEEEEeCCHHH-------HHhhcCeEEEEe
Q psy18239 10 RKNSQTWISFGLFYSSLEE-------CEALCTRLAVMV 40 (97)
Q Consensus 10 ~~~~~~~~tiii~tH~~~~-------~~~~~d~i~~l~ 40 (97)
..+.+.+.|+++++|.... +..++|-++.|+
T Consensus 149 ~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 149 KNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred HHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 3345568899999997654 445566666565
No 431
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=66.11 E-value=4.7 Score=29.85 Aligned_cols=31 Identities=6% Similarity=-0.140 Sum_probs=23.0
Q ss_pred hhhccCCcEEEEEeCCHH---------HHHhhcCeEEEEe
Q psy18239 10 RKNSQTWISFGLFYSSLE---------ECEALCTRLAVMV 40 (97)
Q Consensus 10 ~~~~~~~~tiii~tH~~~---------~~~~~~d~i~~l~ 40 (97)
..+++.|.|+|+++|... ....+||.++.|+
T Consensus 161 ~~Lk~~g~TvLlt~~~~~~~~~~~~~~~~~~laDgVI~L~ 200 (509)
T PRK09302 161 AWLKQKGVTAVITGERGDEYGPLTRYGVEEFVSDCVIILR 200 (509)
T ss_pred HHHHhCCCEEEEEECCccCcCCccccCceEEEeeEEEEEe
Confidence 335566899999999764 2345899999886
No 432
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=63.15 E-value=8.1 Score=30.48 Aligned_cols=36 Identities=8% Similarity=-0.169 Sum_probs=25.5
Q ss_pred hhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE
Q psy18239 10 RKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSC 46 (97)
Q Consensus 10 ~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 46 (97)
..+.+.+.++|++||+.+.+...+++..+++ +.+.+
T Consensus 434 e~l~~~~~~vIitTH~~el~~~~~~~~~v~~-~~~~~ 469 (782)
T PRK00409 434 EYLRKRGAKIIATTHYKELKALMYNREGVEN-ASVEF 469 (782)
T ss_pred HHHHHCCCEEEEECChHHHHHHHhcCCCeEE-EEEEE
Confidence 3444568899999999998887777766553 44443
No 433
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=62.92 E-value=15 Score=29.42 Aligned_cols=33 Identities=6% Similarity=-0.218 Sum_probs=24.0
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNG 42 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 42 (97)
+..+...+..|+|+||+....+. +|.++.+.+.
T Consensus 866 l~~i~~~~~qiiIISH~eel~e~-~~~~i~V~k~ 898 (908)
T COG0419 866 LEELLSDGRQIIIISHVEELKER-ADVRIRVKKD 898 (908)
T ss_pred HHHHHhcCCeEEEEeChHHHHHh-CCeEEEEEec
Confidence 44455558999999998887765 7777776543
No 434
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=62.30 E-value=12 Score=28.06 Aligned_cols=31 Identities=19% Similarity=0.152 Sum_probs=26.7
Q ss_pred CCcEEEEEeCCHHHHHhh-cCeEEEEeCCEEe
Q psy18239 15 TWISFGLFYSSLEECEAL-CTRLAVMVNGRLS 45 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~ 45 (97)
-|.|++++||+.+....+ .|+++++.-|...
T Consensus 557 ~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 557 AGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 489999999999999998 8888888777644
No 435
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=62.23 E-value=13 Score=27.72 Aligned_cols=32 Identities=25% Similarity=0.181 Sum_probs=27.4
Q ss_pred cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe
Q psy18239 14 QTWISFGLFYSSLEECEALCTRLAVMVNGRLS 45 (97)
Q Consensus 14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 45 (97)
..+.++|.+|-.++.....+||+++|++.+-.
T Consensus 381 gd~iS~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 381 GDLISTIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred cCceEEEEEeccchhhhhhcceEEEecccCcc
Confidence 34589999999999999999999999987643
No 436
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=61.10 E-value=16 Score=29.43 Aligned_cols=31 Identities=10% Similarity=-0.063 Sum_probs=22.3
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVN 41 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 41 (97)
+..... +..+|++||+.... .+||+++.+..
T Consensus 1121 l~~~~~-~~~~i~~t~~~~~~-~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1121 IREKAG-EAQFIVVSLRSPMI-EYADRAIGVTM 1151 (1164)
T ss_pred HHHhcC-CCeEEEEECcHHHH-HhcceeEeEEE
Confidence 333433 47899999998755 68999987653
No 437
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=57.67 E-value=11 Score=28.37 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=24.7
Q ss_pred cCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239 14 QTWISFGLFYSSLEECEALCTRLAVMVN 41 (97)
Q Consensus 14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~ 41 (97)
.+++|.+++.||+-.+..++||++++..
T Consensus 504 ~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 504 NNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred hcCceEEEEecceehhhhhhceEEEEec
Confidence 3578999999999999999999999853
No 438
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.15 E-value=11 Score=31.40 Aligned_cols=20 Identities=10% Similarity=-0.057 Sum_probs=17.5
Q ss_pred CCcEEEEEeCCHHHHHhhcC
Q psy18239 15 TWISFGLFYSSLEECEALCT 34 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d 34 (97)
.|.++|++||++.++..+|.
T Consensus 1259 ~~~~viiitHd~~~~~~~~~ 1278 (1311)
T TIGR00606 1259 RNFQLLVITHDEDFVELLGR 1278 (1311)
T ss_pred cCCeEEEEecCHHHHHHHhh
Confidence 47899999999999998864
No 439
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=54.35 E-value=15 Score=24.35 Aligned_cols=23 Identities=4% Similarity=-0.345 Sum_probs=16.4
Q ss_pred hhhhccC-CcEEEEEeCCHHHHHh
Q psy18239 9 SRKNSQT-WISFGLFYSSLEECEA 31 (97)
Q Consensus 9 ~~~~~~~-~~tiii~tH~~~~~~~ 31 (97)
+..+.+. +.++|++||+.+.+..
T Consensus 136 l~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 136 LHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHhccCCeEEEEcccHHHHHH
Confidence 3344444 7899999999987653
No 440
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=51.60 E-value=17 Score=24.62 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=24.3
Q ss_pred CcEEEEEeCCHHHHH---hhcCeEEEEeCCEEeEecCh
Q psy18239 16 WISFGLFYSSLEECE---ALCTRLAVMVNGRLSCLGSV 50 (97)
Q Consensus 16 ~~tiii~tH~~~~~~---~~~d~i~~l~~G~i~~~g~~ 50 (97)
+..+++=+=+-.... .+.+|++++++|++.+.|.+
T Consensus 182 ~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y~Gg~ 219 (237)
T PF00837_consen 182 QCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVYKGGP 219 (237)
T ss_pred CCCEEEEccCCHHHHHhCCCcceEEEEECCEEEEeCCC
Confidence 556665554333322 36899999999999999864
No 441
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=51.54 E-value=20 Score=23.44 Aligned_cols=18 Identities=6% Similarity=-0.354 Sum_probs=14.7
Q ss_pred CcEEEEEeCCHHHHHhhc
Q psy18239 16 WISFGLFYSSLEECEALC 33 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~ 33 (97)
+.++|++||+.+.+....
T Consensus 144 ~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 144 CPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CcEEEEEcChHHHHHhhh
Confidence 358999999999888754
No 442
>PRK13764 ATPase; Provisional
Probab=51.43 E-value=40 Score=26.01 Aligned_cols=34 Identities=6% Similarity=0.044 Sum_probs=27.9
Q ss_pred hhccCCcEEEEEeC---------------CHHHHHhhcCeEEEEeCCEE
Q psy18239 11 KNSQTWISFGLFYS---------------SLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 11 ~~~~~~~tiii~tH---------------~~~~~~~~~d~i~~l~~G~i 44 (97)
.++..|..++-+-| ++..+...+|+++++.+|++
T Consensus 344 ~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 344 DMRLAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HHHHcCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEE
Confidence 34444666888889 88888999999999999998
No 443
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=51.26 E-value=23 Score=26.26 Aligned_cols=35 Identities=17% Similarity=0.052 Sum_probs=27.9
Q ss_pred hhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239 9 SRKNS-QTWISFGLFYSSLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 9 ~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 43 (97)
.+.+. +.|.+.|+|+=-..+-...+|+++.|++-+
T Consensus 380 vr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~ 415 (448)
T PF09818_consen 380 VRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYR 415 (448)
T ss_pred HHHHHHHcCceEEEEeccchhhHhhCCEEEEecCcc
Confidence 34443 358888888888888888999999998865
No 444
>COG3910 Predicted ATPase [General function prediction only]
Probab=49.16 E-value=23 Score=23.73 Aligned_cols=36 Identities=6% Similarity=-0.127 Sum_probs=25.6
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 44 (97)
+..+.+.|.-+||+||.+=..+.=.-.|+-++.+.+
T Consensus 171 l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~ 206 (233)
T COG3910 171 LRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI 206 (233)
T ss_pred HHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc
Confidence 445567789999999998876654445666766653
No 445
>PF12399 BCA_ABC_TP_C: Branched-chain amino acid ATP-binding cassette transporter
Probab=48.45 E-value=14 Score=15.59 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=11.1
Q ss_pred EEeEecChHHHHHhh
Q psy18239 43 RLSCLGSVQHLKNKF 57 (97)
Q Consensus 43 ~i~~~g~~~~l~~~~ 57 (97)
++++.|+++++..++
T Consensus 1 ~via~G~p~~i~~n~ 15 (23)
T PF12399_consen 1 RVIAEGTPEEIRANP 15 (23)
T ss_pred CEeeEcCHHHHhcCH
Confidence 367889999887643
No 446
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=47.44 E-value=41 Score=21.63 Aligned_cols=30 Identities=17% Similarity=0.014 Sum_probs=17.6
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVM 39 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l 39 (97)
.+.+..+ +.-+|++||+..... .+|+.+.+
T Consensus 182 ~l~~~~~-~~Q~ii~Th~~~~~~-~a~~~~~v 211 (220)
T PF02463_consen 182 LLKELSK-QSQFIITTHNPEMFE-DADKLIGV 211 (220)
T ss_dssp HHHHHTT-TSEEEEE-S-HHHHT-T-SEEEEE
T ss_pred ccccccc-ccccccccccccccc-cccccccc
Confidence 3444433 477999999977665 47887654
No 447
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=46.48 E-value=48 Score=19.09 Aligned_cols=37 Identities=16% Similarity=0.020 Sum_probs=22.8
Q ss_pred hhhhccCCcEEEEEe-CCHHHHHhhcCeEEEEeCCEEe
Q psy18239 9 SRKNSQTWISFGLFY-SSLEECEALCTRLAVMVNGRLS 45 (97)
Q Consensus 9 ~~~~~~~~~tiii~t-H~~~~~~~~~d~i~~l~~G~i~ 45 (97)
++..++.|..+|.+| .....+.+++|.++.+..+...
T Consensus 73 ~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~~~~~~ 110 (131)
T PF01380_consen 73 LRFAKERGAPVILITSNSESPLARLADIVLYIPTGEES 110 (131)
T ss_dssp HHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEESSCGS
T ss_pred hHHHHhcCCeEEEEeCCCCCchhhhCCEEEEecCCCcc
Confidence 334444555554444 5567777888888887766533
No 448
>KOG0066|consensus
Probab=46.38 E-value=16 Score=27.71 Aligned_cols=40 Identities=8% Similarity=-0.167 Sum_probs=27.5
Q ss_pred hhhhhhh-hccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239 5 RCQHSRK-NSQTWISFGLFYSSLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 5 ~~~~~~~-~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 44 (97)
.|..+.+ +++....+||||||-..+.+-....+++.+-.+
T Consensus 739 SIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 739 SIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred hHHHHHHHHHhccCcEEEEecccceeeecCceEEEEccCCh
Confidence 3444444 556677899999999888776666666665444
No 449
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=43.97 E-value=61 Score=20.47 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=24.5
Q ss_pred hhhhccCCcEEEEEeCCH----------------------HHHHhhcCeEEEEeCCE
Q psy18239 9 SRKNSQTWISFGLFYSSL----------------------EECEALCTRLAVMVNGR 43 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~----------------------~~~~~~~d~i~~l~~G~ 43 (97)
+..+++.+.++|+|+.+. ..++..||+++++..|.
T Consensus 109 ~~~l~~~~~~~viVsnEvG~g~vp~~~~~r~f~d~lG~lnq~la~~ad~v~~vv~Gi 165 (169)
T cd00544 109 LAAVRNKPGTLILVSNEVGLGVVPENALGRRFRDELGRLNQRLAALADEVYLVVSGI 165 (169)
T ss_pred HHHHHcCCCcEEEEECCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCc
Confidence 444566688899999855 34556788888887764
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=40.22 E-value=26 Score=20.73 Aligned_cols=19 Identities=0% Similarity=-0.155 Sum_probs=14.1
Q ss_pred ccCCcEEEEEeCCHHHHHh
Q psy18239 13 SQTWISFGLFYSSLEECEA 31 (97)
Q Consensus 13 ~~~~~tiii~tH~~~~~~~ 31 (97)
++.+.++++++|.......
T Consensus 124 ~~~~~~vv~~~~~~~~~~~ 142 (165)
T cd01120 124 RKGGVTVIFTLQVPSGDKG 142 (165)
T ss_pred hcCCceEEEEEecCCcccc
Confidence 3458999999998765543
No 451
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=37.75 E-value=34 Score=27.38 Aligned_cols=23 Identities=9% Similarity=-0.073 Sum_probs=18.7
Q ss_pred hhhhccCCcEEEEEeCCHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEA 31 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~ 31 (97)
++..++.|.+++++||+++++..
T Consensus 713 lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 713 LKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHHhcCCEEEEEeCCHHHHhh
Confidence 44556678899999999998875
No 452
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=37.69 E-value=13 Score=25.83 Aligned_cols=38 Identities=16% Similarity=-0.068 Sum_probs=29.5
Q ss_pred cEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 17 ISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 17 ~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+++.++|..+.. ...+|+..|..|+....|.+.+...
T Consensus 244 ~~~i~T~Ha~~~~-~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 244 PGSITTLHAGSPE-EAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred CeEEEEEeCCCHH-HHHHHHHHHhhccccccCCCHHHHH
Confidence 3569999999854 4589999888888888887777653
No 453
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=35.78 E-value=70 Score=18.43 Aligned_cols=31 Identities=3% Similarity=-0.155 Sum_probs=17.7
Q ss_pred hccCCcEEEEEeCC-HHHHHhhcCeEEEEeCC
Q psy18239 12 NSQTWISFGLFYSS-LEECEALCTRLAVMVNG 42 (97)
Q Consensus 12 ~~~~~~tiii~tH~-~~~~~~~~d~i~~l~~G 42 (97)
.++.|..+|.+|.+ -..+.+++|.++.+..+
T Consensus 69 a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 100 (126)
T cd05008 69 AKEKGAKTVAITNVVGSTLAREADYVLYLRAG 100 (126)
T ss_pred HHHcCCeEEEEECCCCChHHHhCCEEEEecCC
Confidence 34445555555543 34566677777766554
No 454
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=33.92 E-value=1.1e+02 Score=19.23 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=23.3
Q ss_pred hhhhccCCcEEEEEeCCH----------------------HHHHhhcCeEEEEeCCE
Q psy18239 9 SRKNSQTWISFGLFYSSL----------------------EECEALCTRLAVMVNGR 43 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~----------------------~~~~~~~d~i~~l~~G~ 43 (97)
...+++.+.++++++... ..++..||+++++..|.
T Consensus 109 i~~L~~~~~tvVlVs~Evg~g~vp~~~~~r~~~d~lG~lnq~la~~ad~V~~v~~Gi 165 (170)
T PRK05800 109 LAALQQLPAKIILVTNEVGMGIVPEYRLGRHFRDIAGRLNQQLAAAADEVYLVVAGL 165 (170)
T ss_pred HHHHHcCCCCEEEEEcCCcccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEeCCC
Confidence 333455677888888743 34556788888887764
No 455
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=33.21 E-value=34 Score=25.26 Aligned_cols=34 Identities=6% Similarity=0.132 Sum_probs=29.2
Q ss_pred EEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 18 SFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 18 tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
|+++.+||+. ..++|++..+.+|.++.....++.
T Consensus 313 tVl~~~~d~~--dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 313 TVLVEGDDMN--EPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred EEEccCcCCC--cchhhhhccccceEEEEecchhhC
Confidence 7888999984 578999999999999998877774
No 456
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=31.50 E-value=48 Score=26.29 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=18.1
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHh
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEA 31 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~ 31 (97)
.++..++.|.+++++||++.++..
T Consensus 660 ~lk~~RK~~~~~i~~TQ~~~d~~~ 683 (811)
T PRK13873 660 WLKTLRKKNVSVIFATQSLADIDG 683 (811)
T ss_pred HHHHHHHcCCEEEEEECCHHHHhc
Confidence 345556678899999999986653
No 457
>PF06289 FlbD: Flagellar protein (FlbD); InterPro: IPR009384 This family consists of several bacterial FlbD flagellar proteins. The exact function of this family is unknown [].
Probab=30.73 E-value=36 Score=18.04 Aligned_cols=43 Identities=21% Similarity=0.181 Sum_probs=33.0
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCE-EeEecChHHHHHhh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGR-LSCLGSVQHLKNKF 57 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~-i~~~g~~~~l~~~~ 57 (97)
+|..+.+-.+.++.++...|.++.|-+|+ .+...+.+++.++.
T Consensus 8 ng~~f~lN~d~IE~ie~~PDTvItL~~G~k~vV~Es~~eVi~ki 51 (60)
T PF06289_consen 8 NGEPFYLNPDLIETIEETPDTVITLTNGKKYVVKESVEEVIEKI 51 (60)
T ss_pred CCCEEEEChHHEEEEEEcCCeEEEEeCCCEEEEECCHHHHHHHH
Confidence 46677777777888888899999888885 66677888876643
No 458
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=30.32 E-value=75 Score=26.31 Aligned_cols=25 Identities=4% Similarity=-0.169 Sum_probs=19.4
Q ss_pred CCcEEEEEeCCHHHHHhh-cCeEEEE
Q psy18239 15 TWISFGLFYSSLEECEAL-CTRLAVM 39 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~-~d~i~~l 39 (97)
.|.+||++||+...+... +++++-+
T Consensus 323 ~GsrIIiTTrd~~vl~~~~~~~~~~v 348 (1153)
T PLN03210 323 SGSRIIVITKDKHFLRAHGIDHIYEV 348 (1153)
T ss_pred CCcEEEEEeCcHHHHHhcCCCeEEEe
Confidence 478999999999988754 5666655
No 459
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=30.09 E-value=1.6e+02 Score=19.09 Aligned_cols=70 Identities=10% Similarity=0.012 Sum_probs=37.3
Q ss_pred EEEEE--eCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEEEeCCCchhHHHHHHHhhhccce
Q psy18239 18 SFGLF--YSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLKGNT 87 (97)
Q Consensus 18 tiii~--tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (97)
-||+| -+|..-+.+..|--.+--+|--+.....+.+.........+-+.=++.+-+.+...+.+.+|+..
T Consensus 4 evIVVEGK~D~~~lk~~~d~~~I~T~Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~~GekIRk~i~~~vp~~k 75 (174)
T TIGR00334 4 EIIVVEGKDDQARIKQAFDVDVIETNGSALKDETINLIKKAQKKQGVIILTDPDFPGEKIRKKIEQHLPGYE 75 (174)
T ss_pred eEEEEecchHHHHHHHhcCceEEEECCCccCHHHHHHHHHHhhcCCEEEEeCCCCchHHHHHHHHHHCCCCe
Confidence 35666 56666677766644455555433222222232223333333333333334888899999888754
No 460
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=29.24 E-value=40 Score=22.82 Aligned_cols=33 Identities=12% Similarity=0.021 Sum_probs=26.5
Q ss_pred hccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe
Q psy18239 12 NSQTWISFGLFYSSLEECEALCTRLAVMVNGRLS 45 (97)
Q Consensus 12 ~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 45 (97)
+...+.+.|+.+|.+.... .++.|.+|..|...
T Consensus 180 ~~~~~~~~ivls~~la~~~-~~paI~vl~s~sr~ 212 (249)
T cd01128 180 FKGTGNMELVLDRRLAERR-IFPAIDILKSGTRK 212 (249)
T ss_pred HhcCCCcEEEEchHHhhCC-CCCeEEEcCCCCcc
Confidence 3335678999999999765 58999999999873
No 461
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=28.89 E-value=1.2e+02 Score=19.37 Aligned_cols=34 Identities=9% Similarity=-0.104 Sum_probs=22.1
Q ss_pred hhhhhhccCCcEEEEEeCCHHH----HHhhcCeEEEEe
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEE----CEALCTRLAVMV 40 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~----~~~~~d~i~~l~ 40 (97)
..+...+..|..++++|+++.. +..+++..+.+.
T Consensus 107 ~~l~~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 107 EFLAQHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp HGGGGCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred HHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 4466667779999999999864 444566666554
No 462
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=28.22 E-value=74 Score=18.38 Aligned_cols=30 Identities=3% Similarity=-0.161 Sum_probs=15.1
Q ss_pred ccCCcEEEEEeC-CHHHHHhhcCeEEEEeCC
Q psy18239 13 SQTWISFGLFYS-SLEECEALCTRLAVMVNG 42 (97)
Q Consensus 13 ~~~~~tiii~tH-~~~~~~~~~d~i~~l~~G 42 (97)
+++|..+|..|. .-..+.++||.++.+..+
T Consensus 71 ~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (128)
T cd05014 71 KRRGAPIIAITGNPNSTLAKLSDVVLDLPVE 101 (128)
T ss_pred HHCCCeEEEEeCCCCCchhhhCCEEEECCCC
Confidence 333444444443 345555667766665443
No 463
>PRK06193 hypothetical protein; Provisional
Probab=27.70 E-value=69 Score=21.15 Aligned_cols=18 Identities=6% Similarity=-0.315 Sum_probs=13.3
Q ss_pred hccCCcEEEEEeCCHHHH
Q psy18239 12 NSQTWISFGLFYSSLEEC 29 (97)
Q Consensus 12 ~~~~~~tiii~tH~~~~~ 29 (97)
+...+.++++|+|++..-
T Consensus 151 l~~~~~~vLlVgHnp~i~ 168 (206)
T PRK06193 151 PPDPGTNTVLVGHDDNLE 168 (206)
T ss_pred CCCCCCeEEEEeCchHHH
Confidence 334567899999998643
No 464
>PRK04296 thymidine kinase; Provisional
Probab=26.98 E-value=1.6e+02 Score=18.69 Aligned_cols=39 Identities=10% Similarity=-0.104 Sum_probs=27.1
Q ss_pred hhhccCCcEEEEEeCC---------H-HHHHhhcCeEEEEeCCEEeEecC
Q psy18239 10 RKNSQTWISFGLFYSS---------L-EECEALCTRLAVMVNGRLSCLGS 49 (97)
Q Consensus 10 ~~~~~~~~tiii~tH~---------~-~~~~~~~d~i~~l~~G~i~~~g~ 49 (97)
..+...|.+++++.++ . ..+..++|.+..|.. .....|.
T Consensus 100 ~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~-vC~~Cg~ 148 (190)
T PRK04296 100 EVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKA-ICVHCGR 148 (190)
T ss_pred HHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeE-EccccCC
Confidence 3335678999999998 2 466678999998864 2233444
No 465
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=26.66 E-value=66 Score=25.48 Aligned_cols=23 Identities=9% Similarity=-0.097 Sum_probs=18.1
Q ss_pred hhhhccCCcEEEEEeCCHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEA 31 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~ 31 (97)
++..++.|..++++||+++++..
T Consensus 668 lk~~RK~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 668 LKVLRKLNTFVIFATQSVEDASK 690 (800)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHh
Confidence 45566778899999999988654
No 466
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=26.39 E-value=1.5e+02 Score=18.77 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=20.6
Q ss_pred hhhccCCcEEEEEeCCH----------------------HHHHhhcCeEEEEeCCE
Q psy18239 10 RKNSQTWISFGLFYSSL----------------------EECEALCTRLAVMVNGR 43 (97)
Q Consensus 10 ~~~~~~~~tiii~tH~~----------------------~~~~~~~d~i~~l~~G~ 43 (97)
..+.+....+++||.++ ..++..||+++.+-.|-
T Consensus 108 ~~l~~~~~~lViVsnEVG~GiVP~~~~~R~yrd~lG~lnq~lA~~Ad~V~~vv~Gi 163 (167)
T PF02283_consen 108 EALRERNADLVIVSNEVGWGIVPMDPLTRRYRDLLGRLNQRLAARADEVYLVVAGI 163 (167)
T ss_dssp HHHHH--SEEEEEEE---SS---SSHHHHHHHHHHHHHHHHHHHH-SEEEEEETTE
T ss_pred HHHHccCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCEEEEEeCCc
Confidence 33444567888888854 45566789998888774
No 467
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.98 E-value=1.2e+02 Score=20.09 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=28.0
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVN 41 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 41 (97)
.+..+.+..|.+++=+-||-+.=+..|||++-+..
T Consensus 193 eli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 193 ELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred HHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 34455556799999999999999999999987753
No 468
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=24.39 E-value=72 Score=22.99 Aligned_cols=31 Identities=10% Similarity=0.026 Sum_probs=22.8
Q ss_pred ccCCcEEEEEeCCHH--------HHHhhcCeEEEEeCCE
Q psy18239 13 SQTWISFGLFYSSLE--------ECEALCTRLAVMVNGR 43 (97)
Q Consensus 13 ~~~~~tiii~tH~~~--------~~~~~~d~i~~l~~G~ 43 (97)
++.+.+++++.|-.. .+..++|.++.++..+
T Consensus 197 k~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~~ 235 (372)
T cd01121 197 KERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 235 (372)
T ss_pred HHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcCC
Confidence 445899999988533 3677889988886544
No 469
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=23.77 E-value=1.4e+02 Score=16.55 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=17.4
Q ss_pred CeEEEEeCCEEeEecChHHHHHhh
Q psy18239 34 TRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 34 d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
.+-+.+-+|+++...+++++..+.
T Consensus 45 ~~pFAlVnG~~V~A~t~eeL~~kI 68 (78)
T PF07293_consen 45 KKPFALVNGEIVAAETAEELLEKI 68 (78)
T ss_pred CCccEEECCEEEecCCHHHHHHHH
Confidence 345667788888888888876653
No 470
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=23.43 E-value=1.1e+02 Score=24.49 Aligned_cols=22 Identities=5% Similarity=-0.351 Sum_probs=16.2
Q ss_pred hhhhccCCcEEEEEeCCHHHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEECE 30 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~ 30 (97)
+..+.+.|.++|++||+.+...
T Consensus 428 Le~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 428 LEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred HHHHHhcCCEEEEECChHHHHH
Confidence 3444556889999999987644
No 471
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=22.16 E-value=1.3e+02 Score=17.60 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=25.6
Q ss_pred CchhhhhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEEEe
Q psy18239 1 MRIDRCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKF 67 (97)
Q Consensus 1 ~~~~~~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 67 (97)
||+++++....+.+. -..+..+| +.|++..+|....-......+..+.+.+
T Consensus 9 mRLDKwL~~aR~~Kr----------RslAk~~~------~~GrV~vNG~~aKpS~~VK~GD~l~i~~ 59 (100)
T COG1188 9 MRLDKWLWAARFIKR----------RSLAKEMI------EGGRVKVNGQRAKPSKEVKVGDILTIRF 59 (100)
T ss_pred eehHHHHHHHHHhhh----------HHHHHHHH------HCCeEEECCEEcccccccCCCCEEEEEe
Confidence 567777666655443 24455655 4556555554443222233334444444
No 472
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=21.10 E-value=1.5e+02 Score=22.92 Aligned_cols=34 Identities=6% Similarity=-0.051 Sum_probs=23.6
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNG 42 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 42 (97)
+.+..+.+. .-|+.+||-+..++ .+|.-+.+.+.
T Consensus 476 ~~L~~Ls~~-~QVl~VTHlPQVAa-~ad~H~~V~K~ 509 (557)
T COG0497 476 KKLRRLSEH-HQVLCVTHLPQVAA-MADTHFLVEKE 509 (557)
T ss_pred HHHHHHhcC-ceEEEEecHHHHHh-hhcceEEEEEe
Confidence 445566553 67999999777665 48887777553
No 473
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=20.95 E-value=61 Score=21.43 Aligned_cols=19 Identities=16% Similarity=-0.045 Sum_probs=10.1
Q ss_pred hhhhccCCcEEEEEeCCHHH
Q psy18239 9 SRKNSQTWISFGLFYSSLEE 28 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~ 28 (97)
++.+.+.|.++++ ||+...
T Consensus 146 l~~l~~~g~tvi~-t~~~~~ 164 (230)
T PRK08533 146 FKRISSLNKVIIL-TANPKE 164 (230)
T ss_pred HHHHHhCCCEEEE-Eecccc
Confidence 4445555666555 555443
No 474
>PF12846 AAA_10: AAA-like domain
Probab=20.39 E-value=1.2e+02 Score=19.99 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=18.7
Q ss_pred hhhhccCCcEEEEEeCCHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEA 31 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~ 31 (97)
.++-++.|..++++||++.++..
T Consensus 246 ~~~~Rk~g~~~~l~tQ~~~~l~~ 268 (304)
T PF12846_consen 246 LREGRKYGVGLILATQSPSDLPK 268 (304)
T ss_pred HHHHHhcCCEEEEeeCCHHHHhc
Confidence 45556779999999999988875
No 475
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.35 E-value=1.6e+02 Score=17.05 Aligned_cols=28 Identities=7% Similarity=-0.208 Sum_probs=13.6
Q ss_pred CCcEEEEEe-CCHHHHHhhcCeEEEEeCC
Q psy18239 15 TWISFGLFY-SSLEECEALCTRLAVMVNG 42 (97)
Q Consensus 15 ~~~tiii~t-H~~~~~~~~~d~i~~l~~G 42 (97)
.|..++.+| ..-..+.+++|.++.+..|
T Consensus 73 ~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 73 KGATVIGLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred cCCeEEEEECCCCCcHHHhCCEEEEccCC
Confidence 344333333 3334455566666666554
No 476
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=20.05 E-value=1.7e+02 Score=18.20 Aligned_cols=36 Identities=6% Similarity=0.003 Sum_probs=22.8
Q ss_pred hhhhccCCcEEEEEe-CCHHHHHhhcCeEEEEeCCEE
Q psy18239 9 SRKNSQTWISFGLFY-SSLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 9 ~~~~~~~~~tiii~t-H~~~~~~~~~d~i~~l~~G~i 44 (97)
.+..++.|..++.+| ..-..+.++||.++.+..+..
T Consensus 92 ~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~~~~ 128 (179)
T TIGR03127 92 AKKAKEIGATVAAITTNPESTLGKLADVVVEIPAATK 128 (179)
T ss_pred HHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCccc
Confidence 333445566555555 456778888999888765543
Done!