Query psy18239
Match_columns 97
No_of_seqs 156 out of 1230
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 17:15:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18239.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18239hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 98.9 2.2E-09 7.6E-14 74.6 5.3 51 6-56 203-254 (366)
2 3rlf_A Maltose/maltodextrin im 98.9 3.4E-09 1.2E-13 74.0 5.9 51 7-57 174-225 (381)
3 3fvq_A Fe(3+) IONS import ATP- 98.8 9.1E-09 3.1E-13 71.3 6.8 45 13-57 186-230 (359)
4 1b0u_A Histidine permease; ABC 98.8 1.3E-08 4.3E-13 67.7 6.6 50 7-56 194-243 (262)
5 2olj_A Amino acid ABC transpor 98.8 1.6E-08 5.4E-13 67.4 6.9 50 7-56 200-249 (263)
6 3gfo_A Cobalt import ATP-bindi 98.8 4.4E-09 1.5E-13 70.5 3.9 51 6-56 183-234 (275)
7 1oxx_K GLCV, glucose, ABC tran 98.8 1.5E-08 5.1E-13 70.1 6.2 50 7-56 181-231 (353)
8 1g29_1 MALK, maltose transport 98.8 1.4E-08 4.7E-13 70.7 6.0 49 8-56 181-230 (372)
9 2yyz_A Sugar ABC transporter, 98.8 1.5E-08 5E-13 70.3 6.0 50 8-57 175-225 (359)
10 2it1_A 362AA long hypothetical 98.7 1.5E-08 5.2E-13 70.3 6.0 50 7-56 174-224 (362)
11 1z47_A CYSA, putative ABC-tran 98.7 1.6E-08 5.6E-13 70.0 6.1 49 8-56 187-236 (355)
12 1v43_A Sugar-binding transport 98.7 1.5E-08 5.3E-13 70.5 6.0 49 8-56 183-232 (372)
13 4g1u_C Hemin import ATP-bindin 98.7 1.9E-08 6.5E-13 67.0 6.1 49 6-54 187-236 (266)
14 1vpl_A ABC transporter, ATP-bi 98.7 2.6E-08 8.9E-13 66.0 6.5 51 7-57 187-237 (256)
15 3d31_A Sulfate/molybdate ABC t 98.7 1.4E-08 4.8E-13 70.1 5.3 50 7-56 168-218 (348)
16 2onk_A Molybdate/tungstate ABC 98.7 2.6E-08 8.8E-13 65.5 6.2 50 7-56 167-217 (240)
17 1ji0_A ABC transporter; ATP bi 98.7 2.3E-08 7.7E-13 65.6 5.8 48 7-54 180-227 (240)
18 2qi9_C Vitamin B12 import ATP- 98.6 6.6E-08 2.3E-12 63.9 6.1 48 7-54 174-221 (249)
19 1g6h_A High-affinity branched- 98.6 2.7E-08 9.1E-13 65.9 3.9 46 7-52 194-239 (257)
20 2yz2_A Putative ABC transporte 98.6 3.6E-08 1.2E-12 65.6 4.5 52 7-58 179-230 (266)
21 2zu0_C Probable ATP-dependent 98.6 1E-07 3.5E-12 63.4 5.7 49 7-55 205-254 (267)
22 3tif_A Uncharacterized ABC tra 98.5 8.6E-08 3E-12 62.7 4.4 46 7-53 186-232 (235)
23 2nq2_C Hypothetical ABC transp 98.5 2.1E-07 7.2E-12 61.5 6.0 46 7-53 169-215 (253)
24 2pcj_A ABC transporter, lipopr 98.5 2.4E-07 8.3E-12 60.1 5.3 42 7-49 181-222 (224)
25 2ixe_A Antigen peptide transpo 98.5 4.8E-07 1.6E-11 60.3 6.9 49 7-56 197-246 (271)
26 1mv5_A LMRA, multidrug resista 98.4 4.7E-07 1.6E-11 59.4 6.4 47 7-55 180-226 (243)
27 2d2e_A SUFC protein; ABC-ATPas 98.4 2.3E-07 7.9E-12 61.1 4.6 46 7-52 184-230 (250)
28 3nh6_A ATP-binding cassette SU 98.4 7.5E-07 2.6E-11 60.5 7.2 46 9-56 233-278 (306)
29 2ff7_A Alpha-hemolysin translo 98.4 2.5E-07 8.6E-12 60.9 4.7 47 8-56 187-233 (247)
30 2ihy_A ABC transporter, ATP-bi 98.4 8E-08 2.7E-12 64.4 2.2 48 7-54 202-251 (279)
31 2ghi_A Transport protein; mult 98.3 7.1E-07 2.4E-11 59.1 5.3 47 8-56 197-243 (260)
32 3ux8_A Excinuclease ABC, A sub 98.3 8.9E-07 3E-11 65.3 6.1 49 6-55 586-640 (670)
33 2pjz_A Hypothetical protein ST 98.3 1E-06 3.5E-11 58.6 4.6 38 18-55 177-215 (263)
34 3gd7_A Fusion complex of cysti 98.3 8.9E-07 3E-11 62.0 4.4 42 15-57 203-244 (390)
35 2pze_A Cystic fibrosis transme 98.2 3E-06 1E-10 55.1 6.3 40 15-55 179-218 (229)
36 3pih_A Uvrabc system protein A 98.2 1.8E-06 6.1E-11 66.0 5.6 50 7-57 849-904 (916)
37 3qf4_A ABC transporter, ATP-bi 98.2 3.9E-06 1.3E-10 61.2 7.0 41 15-56 527-567 (587)
38 3b5x_A Lipid A export ATP-bind 98.2 3.5E-06 1.2E-10 61.3 6.4 46 9-56 523-568 (582)
39 3ux8_A Excinuclease ABC, A sub 98.2 3E-06 1E-10 62.5 5.7 49 6-55 244-298 (670)
40 2yl4_A ATP-binding cassette SU 98.1 3E-06 1E-10 61.8 5.5 46 9-56 526-571 (595)
41 2cbz_A Multidrug resistance-as 98.1 3.6E-06 1.2E-10 55.0 5.3 41 15-56 178-218 (237)
42 3j16_B RLI1P; ribosome recycli 98.1 1.3E-06 4.6E-11 64.1 3.5 50 7-56 508-560 (608)
43 2bbs_A Cystic fibrosis transme 98.1 6.9E-06 2.4E-10 55.3 6.6 40 15-55 208-247 (290)
44 3qf4_B Uncharacterized ABC tra 98.1 4E-06 1.4E-10 61.3 5.6 41 15-56 539-579 (598)
45 4a82_A Cystic fibrosis transme 98.1 4.5E-06 1.6E-10 60.7 5.7 41 15-56 525-565 (578)
46 3b60_A Lipid A export ATP-bind 98.1 4.8E-06 1.7E-10 60.6 5.6 46 9-56 523-568 (582)
47 2vf7_A UVRA2, excinuclease ABC 98.1 4.4E-06 1.5E-10 63.4 5.1 49 7-56 774-828 (842)
48 3pih_A Uvrabc system protein A 98.0 1E-05 3.6E-10 61.8 6.9 49 7-56 507-561 (916)
49 1yqt_A RNAse L inhibitor; ATP- 98.0 6E-06 2E-10 59.8 4.1 49 7-55 442-493 (538)
50 2r6f_A Excinuclease ABC subuni 97.9 1.2E-05 4.2E-10 61.7 5.6 50 6-56 888-943 (972)
51 2ygr_A Uvrabc system protein A 97.9 1.7E-05 5.9E-10 61.0 6.4 49 7-56 907-961 (993)
52 4f4c_A Multidrug resistance pr 97.9 5.5E-06 1.9E-10 65.3 3.8 43 15-58 1265-1307(1321)
53 3g5u_A MCG1178, multidrug resi 97.9 1.1E-05 3.8E-10 63.4 4.7 42 14-56 1218-1259(1284)
54 3bk7_A ABC transporter ATP-bin 97.9 1.2E-05 4.1E-10 59.0 4.6 49 7-55 512-563 (607)
55 3qf7_A RAD50; ABC-ATPase, ATPa 97.9 2.5E-05 8.5E-10 54.0 5.6 39 7-46 326-364 (365)
56 2iw3_A Elongation factor 3A; a 97.8 6E-05 2.1E-09 58.1 7.1 41 15-55 594-635 (986)
57 2ygr_A Uvrabc system protein A 97.8 3.5E-05 1.2E-09 59.4 5.2 48 7-55 564-617 (993)
58 2r6f_A Excinuclease ABC subuni 97.7 3.3E-05 1.1E-09 59.4 4.6 48 7-55 547-600 (972)
59 3g5u_A MCG1178, multidrug resi 97.7 3E-05 1E-09 61.0 4.3 41 15-56 574-614 (1284)
60 3ozx_A RNAse L inhibitor; ATP 97.6 4.3E-05 1.5E-09 55.4 4.1 47 7-53 426-475 (538)
61 4f4c_A Multidrug resistance pr 97.6 4.7E-05 1.6E-09 60.1 4.5 40 15-55 602-641 (1321)
62 2vf7_A UVRA2, excinuclease ABC 97.5 8.2E-05 2.8E-09 56.6 4.5 47 8-55 423-475 (842)
63 3j16_B RLI1P; ribosome recycli 97.4 0.0002 6.9E-09 52.6 5.5 37 7-43 262-298 (608)
64 1yqt_A RNAse L inhibitor; ATP- 97.4 0.00014 4.8E-09 52.6 3.9 36 7-42 199-234 (538)
65 2iw3_A Elongation factor 3A; a 97.4 9.6E-05 3.3E-09 57.0 3.0 38 12-49 944-981 (986)
66 3bk7_A ABC transporter ATP-bin 97.4 0.00023 7.9E-09 52.3 4.9 36 7-42 269-304 (607)
67 1f2t_B RAD50 ABC-ATPase; DNA d 97.2 0.00067 2.3E-08 41.3 5.0 34 9-43 106-141 (148)
68 3ozx_A RNAse L inhibitor; ATP 97.2 0.00038 1.3E-08 50.4 4.1 35 8-43 180-214 (538)
69 1znw_A Guanylate kinase, GMP k 97.1 8E-05 2.7E-09 47.2 0.4 32 9-40 170-202 (207)
70 4aby_A DNA repair protein RECN 97.1 0.001 3.6E-08 45.9 6.1 38 8-47 339-380 (415)
71 2ehv_A Hypothetical protein PH 96.9 0.00046 1.6E-08 44.2 2.6 33 9-41 165-207 (251)
72 2npi_A Protein CLP1; CLP1-PCF1 96.6 0.00098 3.3E-08 47.5 2.4 38 15-53 287-336 (460)
73 1sgw_A Putative ABC transporte 96.4 0.00014 4.8E-09 46.8 -2.5 37 7-44 174-210 (214)
74 1tf7_A KAIC; homohexamer, hexa 96.4 0.00097 3.3E-08 47.9 1.4 34 8-41 167-209 (525)
75 4ad8_A DNA repair protein RECN 96.4 0.0038 1.3E-07 44.7 4.3 34 8-43 441-474 (517)
76 2bdt_A BH3686; alpha-beta prot 96.1 0.00041 1.4E-08 43.0 -1.7 44 9-54 139-183 (189)
77 1tf7_A KAIC; homohexamer, hexa 95.7 0.0025 8.4E-08 45.8 0.8 35 9-43 400-444 (525)
78 1cr0_A DNA primase/helicase; R 95.7 0.0061 2.1E-07 40.3 2.6 37 8-44 178-237 (296)
79 2obl_A ESCN; ATPase, hydrolase 95.5 0.00039 1.3E-08 47.8 -3.7 35 18-54 220-254 (347)
80 2w0m_A SSO2452; RECA, SSPF, un 95.5 0.0078 2.7E-07 37.8 2.4 36 8-43 149-193 (235)
81 3qkt_A DNA double-strand break 95.4 0.014 4.7E-07 39.6 3.7 32 8-40 296-327 (339)
82 4a74_A DNA repair and recombin 95.0 0.012 4.1E-07 37.0 2.2 36 8-43 161-201 (231)
83 2o5v_A DNA replication and rep 94.8 0.02 6.8E-07 39.5 2.9 33 17-53 322-354 (359)
84 4gp7_A Metallophosphoesterase; 94.7 0.0095 3.2E-07 36.5 1.1 23 9-31 142-164 (171)
85 2o8b_B DNA mismatch repair pro 94.4 0.058 2E-06 42.0 4.9 44 8-52 893-939 (1022)
86 2dpy_A FLII, flagellum-specifi 94.2 0.0015 5.1E-08 46.2 -3.9 36 18-55 309-344 (438)
87 1e69_A Chromosome segregation 93.8 0.063 2.1E-06 36.1 3.7 29 15-44 271-301 (322)
88 3thx_A DNA mismatch repair pro 93.7 0.0092 3.1E-07 46.0 -0.6 43 9-52 767-810 (934)
89 3auy_A DNA double-strand break 91.3 0.2 7E-06 34.2 3.7 25 16-41 336-360 (371)
90 1w1w_A Structural maintenance 91.2 0.35 1.2E-05 33.6 4.8 31 9-40 380-410 (430)
91 1n0w_A DNA repair protein RAD5 90.3 0.17 5.9E-06 31.8 2.5 28 15-42 163-209 (243)
92 2cvh_A DNA repair and recombin 89.5 0.22 7.5E-06 30.8 2.4 34 9-42 138-185 (220)
93 2pt7_A CAG-ALFA; ATPase, prote 86.0 0.044 1.5E-06 37.2 -2.6 58 9-67 258-316 (330)
94 3kta_B Chromosome segregation 85.1 1.9 6.6E-05 26.5 4.8 33 9-43 111-145 (173)
95 1ye8_A Protein THEP1, hypothet 84.7 1.2 4E-05 27.4 3.7 22 14-35 128-152 (178)
96 1wb9_A DNA mismatch repair pro 84.4 0.19 6.6E-06 38.1 0.0 40 8-48 711-751 (800)
97 1s96_A Guanylate kinase, GMP k 83.0 1.1 3.6E-05 28.6 3.1 32 15-55 129-160 (219)
98 2dr3_A UPF0273 protein PH0284; 82.9 0.96 3.3E-05 28.3 2.9 29 13-41 160-196 (247)
99 3b85_A Phosphate starvation-in 82.9 0.64 2.2E-05 29.4 2.0 23 7-31 141-163 (208)
100 3jvv_A Twitching mobility prot 82.4 0.13 4.6E-06 35.3 -1.4 32 10-42 215-246 (356)
101 2v9p_A Replication protein E1; 76.1 0.15 5.3E-06 34.4 -2.7 30 23-54 236-265 (305)
102 3lda_A DNA repair protein RAD5 72.1 2.5 8.5E-05 29.5 2.6 36 8-43 309-364 (400)
103 2eyu_A Twitching motility prot 70.7 0.57 1.9E-05 30.7 -0.9 27 14-41 121-147 (261)
104 3b9q_A Chloroplast SRP recepto 58.2 7.8 0.00027 25.8 2.8 30 15-44 246-284 (302)
105 1ni3_A YCHF GTPase, YCHF GTP-b 54.0 0.25 8.6E-06 34.5 -5.2 35 13-49 171-207 (392)
106 1pzn_A RAD51, DNA repair and r 50.9 4.7 0.00016 27.4 0.8 33 15-47 275-307 (349)
107 2r6a_A DNAB helicase, replicat 50.8 7.1 0.00024 27.3 1.7 36 9-44 346-401 (454)
108 3ec2_A DNA replication protein 48.9 2.5 8.7E-05 25.3 -0.7 18 11-28 128-145 (180)
109 3thx_B DNA mismatch repair pro 47.7 6.2 0.00021 30.6 1.1 37 9-46 778-816 (918)
110 2og2_A Putative signal recogni 42.4 19 0.00066 24.6 2.8 30 15-44 303-341 (359)
111 1ewq_A DNA mismatch repair pro 39.4 16 0.00056 27.6 2.3 31 14-47 686-716 (765)
112 1nlf_A Regulatory protein REPA 38.3 12 0.00043 24.0 1.3 23 8-30 162-185 (279)
113 2zr9_A Protein RECA, recombina 37.4 25 0.00084 23.8 2.7 36 13-48 185-236 (349)
114 1c9k_A COBU, adenosylcobinamid 35.6 60 0.0021 19.9 4.1 35 9-43 119-175 (180)
115 2xhz_A KDSD, YRBH, arabinose 5 27.9 64 0.0022 19.0 3.3 32 11-42 118-150 (183)
116 1m3s_A Hypothetical protein YC 27.5 70 0.0024 18.9 3.4 35 9-43 99-134 (186)
117 2i3b_A HCR-ntpase, human cance 24.1 4.9 0.00017 24.8 -2.4 23 23-47 146-168 (189)
118 2ewv_A Twitching motility prot 24.1 9.3 0.00032 26.1 -1.2 25 14-39 232-256 (372)
119 1tk9_A Phosphoheptose isomeras 23.6 67 0.0023 18.9 2.8 12 28-39 150-161 (188)
120 1vim_A Hypothetical protein AF 23.3 68 0.0023 19.4 2.8 33 11-43 111-144 (200)
121 3sho_A Transcriptional regulat 20.4 97 0.0033 18.2 3.0 34 10-43 108-142 (187)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.88 E-value=2.2e-09 Score=74.57 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=44.1
Q ss_pred hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
...++++.+ .|.|+|++||+++++..+|||+++|++|+++..|++.+++..
T Consensus 203 ~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 203 LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp HHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred HHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 445566654 489999999999999999999999999999999999998654
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.87 E-value=3.4e-09 Score=73.96 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=43.9
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
..++.+.+ .|.|+|++|||++++..+|||+++|++|++...|++++++..+
T Consensus 174 ~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 174 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp HHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 34555544 4899999999999999999999999999999999999987644
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.82 E-value=9.1e-09 Score=71.33 Aligned_cols=45 Identities=24% Similarity=0.160 Sum_probs=41.2
Q ss_pred ccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 13 SQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 13 ~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
++.|.|+|++|||++++..+|||+++|++|++...|+++++...+
T Consensus 186 ~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 186 RANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp HHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 446899999999999999999999999999999999999987654
No 4
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.80 E-value=1.3e-08 Score=67.71 Aligned_cols=50 Identities=4% Similarity=0.092 Sum_probs=43.0
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
..+.++.++|.|+|++||+++++..+||++++|++|+++..|+++++...
T Consensus 194 ~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 243 (262)
T 1b0u_A 194 RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243 (262)
T ss_dssp HHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 34555555589999999999999999999999999999999999988653
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.79 E-value=1.6e-08 Score=67.38 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=43.0
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
..+.++.++|.|+|++||+++++..+||++++|++|+++..|+++++...
T Consensus 200 ~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 200 SVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 34555555589999999999999999999999999999999999988653
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.78 E-value=4.4e-09 Score=70.48 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=43.4
Q ss_pred hhhhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 6 CQHSRKNS-QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 6 ~~~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+..+.++. ++|.|+|++||+++++..+||++++|++|+++..|+++++...
T Consensus 183 ~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 183 MKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 34455554 4589999999999999999999999999999999999997653
No 7
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.76 E-value=1.5e-08 Score=70.07 Aligned_cols=50 Identities=16% Similarity=0.257 Sum_probs=42.8
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
..++++.+ .|.|+|++|||++++..+||++++|++|++...|++++++..
T Consensus 181 ~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 231 (353)
T 1oxx_K 181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (353)
T ss_dssp HHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 34555543 489999999999999999999999999999999999998654
No 8
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.76 E-value=1.4e-08 Score=70.70 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=42.5
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.++++.+ .|.|+|++|||++++..+||++++|++|++...|++.+++..
T Consensus 181 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 181 ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 3455544 489999999999999999999999999999999999998764
No 9
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.75 E-value=1.5e-08 Score=70.30 Aligned_cols=50 Identities=18% Similarity=0.198 Sum_probs=42.8
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
.++++.+ .|.|+|++|||++++..+||++++|++|++...|++++++..+
T Consensus 175 ~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 175 EIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 3445544 4899999999999999999999999999999999999987643
No 10
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.75 E-value=1.5e-08 Score=70.25 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=42.8
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
..++++.+ .|.|+|++|||++++..+||++++|++|++...|++++++..
T Consensus 174 ~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 174 AELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp HHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 33455544 489999999999999999999999999999999999998654
No 11
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.75 E-value=1.6e-08 Score=69.95 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=42.5
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.++++.+ .|.|+|++|||++++..+||++++|++|++...|+++++...
T Consensus 187 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 187 FVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp HHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 3455544 489999999999999999999999999999999999998654
No 12
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.75 E-value=1.5e-08 Score=70.46 Aligned_cols=49 Identities=22% Similarity=0.199 Sum_probs=42.5
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.++++.+ .|.|+|++|||++++..+||++++|++|++...|++.+++..
T Consensus 183 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 183 EIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 3455544 389999999999999999999999999999999999998754
No 13
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.74 E-value=1.9e-08 Score=67.01 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=41.7
Q ss_pred hhhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 6 CQHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 6 ~~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
...+.++.++ +.|+|++|||++++..+||++++|++|+++..|+++++.
T Consensus 187 ~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 187 LRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred HHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 3445555544 679999999999999999999999999999999998874
No 14
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.73 E-value=2.6e-08 Score=66.05 Aligned_cols=51 Identities=27% Similarity=0.461 Sum_probs=43.5
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
..+.++.++|.|+|++||+++++..+||++++|++|++...|+++++...+
T Consensus 187 ~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 237 (256)
T 1vpl_A 187 KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 237 (256)
T ss_dssp HHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred HHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHhc
Confidence 345555556899999999999999999999999999999999999886543
No 15
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.73 E-value=1.4e-08 Score=70.10 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=42.8
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
..++++.+ .|.|+|++|||++++..+||++++|++|++...|+++++...
T Consensus 168 ~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 218 (348)
T 3d31_A 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (348)
T ss_dssp HHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 34555543 489999999999999999999999999999999999998654
No 16
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.72 E-value=2.6e-08 Score=65.49 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=42.7
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
..+.++.+ .|.|+|++||+++++..+||++++|++|++...|+++++...
T Consensus 167 ~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 167 EELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp HHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 34555544 489999999999999999999999999999999999998654
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.72 E-value=2.3e-08 Score=65.63 Aligned_cols=48 Identities=15% Similarity=0.038 Sum_probs=41.2
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
..+.++.++|.|+|++||+++++..+||++++|++|++...|+++++.
T Consensus 180 ~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 180 EVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 344555446899999999999999999999999999999999988875
No 18
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.63 E-value=6.6e-08 Score=63.86 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=40.9
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
..+.++.++|.|+|++||+++.+..+||++++|++|++...|+++++.
T Consensus 174 ~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 174 KILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 345555545899999999999999999999999999999999887763
No 19
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.62 E-value=2.7e-08 Score=65.88 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=40.0
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQH 52 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 52 (97)
..+.++.++|.|+|++||+++++..+||++++|++|+++..|++++
T Consensus 194 ~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 3455555558999999999999999999999999999999998888
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.62 E-value=3.6e-08 Score=65.59 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=44.0
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
..+.++.++|.|+|++||+++.+..+||++++|++|++...|+++++.....
T Consensus 179 ~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 230 (266)
T 2yz2_A 179 RIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 230 (266)
T ss_dssp HHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHHSC
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCcc
Confidence 3455554458999999999999999999999999999999999999876543
No 21
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.57 E-value=1e-07 Score=63.44 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=41.2
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhh-cCeEEEEeCCEEeEecChHHHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEAL-CTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
..+.++.++|.|+|++||+++.+..+ ||++++|++|++...|+++++..
T Consensus 205 ~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 254 (267)
T 2zu0_C 205 DGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQ 254 (267)
T ss_dssp HHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHHH
T ss_pred HHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHhh
Confidence 34555555689999999999998886 99999999999999999887654
No 22
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.53 E-value=8.6e-08 Score=62.69 Aligned_cols=46 Identities=9% Similarity=0.102 Sum_probs=36.6
Q ss_pred hhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 7 QHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 7 ~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
..+.++.++ |.|+|++||+++. ..+||++++|++|++...+++.++
T Consensus 186 ~~l~~l~~~~g~tvi~vtHd~~~-~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 186 QLLKKLNEEDGKTVVVVTHDINV-ARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHHHHHHHHCCEEEEECSCHHH-HTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHHHHHHcCCEEEEEcCCHHH-HHhCCEEEEEECCEEEEEcChhhh
Confidence 345555544 8999999999995 578999999999999998877664
No 23
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.51 E-value=2.1e-07 Score=61.52 Aligned_cols=46 Identities=7% Similarity=0.058 Sum_probs=39.1
Q ss_pred hhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 7 QHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 7 ~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
..+.++.++ |.|+|++||+++++..+||++++|++|+ ...|+++++
T Consensus 169 ~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 169 SLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 345555544 8999999999999999999999999999 888888775
No 24
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.47 E-value=2.4e-07 Score=60.12 Aligned_cols=42 Identities=17% Similarity=0.015 Sum_probs=35.2
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS 49 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 49 (97)
..+.++.++|.|+|++||+++.+ .+||++++|++|++...|+
T Consensus 181 ~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 181 DIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 34555554589999999999987 8999999999999988775
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.47 E-value=4.8e-07 Score=60.33 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=40.6
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
..+.++.+ .|.|+|++||+++.+.. ||++++|++|+++..|+++++...
T Consensus 197 ~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 197 RLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp HHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 34555543 48999999999998875 999999999999999999988654
No 26
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.45 E-value=4.7e-07 Score=59.36 Aligned_cols=47 Identities=9% Similarity=0.012 Sum_probs=39.4
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
..+.++. +|.|+|++||+++.+. .||++++|++|++...|+++++..
T Consensus 180 ~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 180 KALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHHHhc-CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 3445554 4899999999999886 599999999999999999988754
No 27
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.43 E-value=2.3e-07 Score=61.13 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=38.9
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhh-cCeEEEEeCCEEeEecChHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEAL-CTRLAVMVNGRLSCLGSVQH 52 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 52 (97)
..+.++.++|.|+|++||+++.+..+ ||++++|++|++...|+++.
T Consensus 184 ~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 184 RGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 34555555689999999999999888 59999999999999998873
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.43 E-value=7.5e-07 Score=60.48 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=39.6
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+..+. .++|+|++||+++.+.. ||++++|++|+++..|+++++...
T Consensus 233 l~~l~-~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 233 LAKVC-ANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HHHHH-TTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHc-CCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhc
Confidence 34443 36899999999999987 999999999999999999998764
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.43 E-value=2.5e-07 Score=60.91 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=39.3
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.+.++. +|.|+|++||+++.+.. ||++++|++|+++..|+++++...
T Consensus 187 ~l~~~~-~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 187 NMHKIC-KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp HHHHHH-TTSEEEEECSSGGGGTT-SSEEEEEETTEEEEEECHHHHHTS
T ss_pred HHHHHc-CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 344453 48999999999998864 999999999999999999988643
No 30
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.42 E-value=8e-08 Score=64.41 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=40.5
Q ss_pred hhhhhhccCCcEE--EEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 7 QHSRKNSQTWISF--GLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 7 ~~~~~~~~~~~ti--ii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
..+.++.++|.|+ |++||+++++..+||++++|++|++...|+++++.
T Consensus 202 ~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 202 SILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp HHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred HHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 3455554448899 99999999999999999999999999999887763
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.34 E-value=7.1e-07 Score=59.14 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=39.2
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
.+.++.+ +.|+|++||+++.+. .||++++|++|++...|+++++...
T Consensus 197 ~l~~l~~-~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 197 AVEDLRK-NRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp HHHHHTT-TSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHhcC-CCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhc
Confidence 3445543 789999999999876 5999999999999999999988653
No 32
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.33 E-value=8.9e-07 Score=65.34 Aligned_cols=49 Identities=6% Similarity=0.071 Sum_probs=41.3
Q ss_pred hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHH
Q psy18239 6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKN 55 (97)
Q Consensus 6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 55 (97)
+..+.++.++|.|+|++|||++.+ ..||++++| ++|+++..|+++++..
T Consensus 586 ~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 586 LDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp HHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHH-HhCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 344556666689999999999987 569999999 8999999999999854
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.26 E-value=1e-06 Score=58.60 Aligned_cols=38 Identities=21% Similarity=0.074 Sum_probs=36.0
Q ss_pred EEEEEeCCHHHHHhhcC-eEEEEeCCEEeEecChHHHHH
Q psy18239 18 SFGLFYSSLEECEALCT-RLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 18 tiii~tH~~~~~~~~~d-~i~~l~~G~i~~~g~~~~l~~ 55 (97)
|+|++||+++++..+|| ++++|++|++...|+++++..
T Consensus 177 tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 177 EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999 999999999999999999864
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.25 E-value=8.9e-07 Score=61.96 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=37.0
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 57 (97)
.+.|+|++||+++.+ ..||++++|++|++...|++.+++..+
T Consensus 203 ~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 203 ADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp TTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred CCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 478999999998755 569999999999999999999987754
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.23 E-value=3e-06 Score=55.09 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=35.8
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.|+|++||+++.+. .||++++|++|++...|+++++..
T Consensus 179 ~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 179 ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp TTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHHHT
T ss_pred CCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 3789999999999886 499999999999999999988754
No 36
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.21 E-value=1.8e-06 Score=65.98 Aligned_cols=50 Identities=6% Similarity=0.064 Sum_probs=42.2
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHHhh
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKNKF 57 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~ 57 (97)
..+..+.+.|.|+|++|||++.+.. ||++++| .+|++++.|+++++....
T Consensus 849 ~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~ 904 (916)
T 3pih_A 849 EVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAKNP 904 (916)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHSCT
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHhCC
Confidence 3455566668999999999998865 9999999 899999999999987643
No 37
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.20 E-value=3.9e-06 Score=61.21 Aligned_cols=41 Identities=12% Similarity=0.235 Sum_probs=37.5
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+++|+|++||+++.+. .||++++|++|+++..|+++++.+.
T Consensus 527 ~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 527 KGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp TTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 4799999999999875 7999999999999999999998754
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.18 E-value=3.5e-06 Score=61.33 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=39.2
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.++.+ |+|+|++||+++.+. .||++++|++|++...|+++++...
T Consensus 523 l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 523 LDELQK-NKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred HHHHcC-CCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 444443 899999999999886 6999999999999999999998653
No 39
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.16 E-value=3e-06 Score=62.51 Aligned_cols=49 Identities=8% Similarity=0.019 Sum_probs=40.9
Q ss_pred hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHH
Q psy18239 6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKN 55 (97)
Q Consensus 6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 55 (97)
+..++++.++|.|+|++|||++.+. .||++++| ++|+++..|+++++..
T Consensus 244 ~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 244 IATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp HHHHHHHHHTTCEEEEECCCHHHHH-HCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 3445556666899999999999876 59999999 8999999999998764
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.15 E-value=3e-06 Score=61.82 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=36.5
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.++.+ ++|+|++||+++.+. .||++++|++|++...|+++++...
T Consensus 526 l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 571 (595)
T 2yl4_A 526 LDRLMD-GRTVLVIAHRLSTIK-NANMVAVLDQGKITEYGKHEELLSK 571 (595)
T ss_dssp HHHHHT-TSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECSCC----
T ss_pred HHHHhc-CCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHHhC
Confidence 444444 789999999999886 4999999999999999999988653
No 41
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.14 E-value=3.6e-06 Score=55.02 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=36.5
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
++.|+|++||+++.+. .||++++|++|++...|+++++...
T Consensus 178 ~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 178 KNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp TTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHHhhc
Confidence 4789999999999875 6999999999999999999987653
No 42
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.14 E-value=1.3e-06 Score=64.08 Aligned_cols=50 Identities=8% Similarity=-0.012 Sum_probs=41.8
Q ss_pred hhhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeC--CEEeEecChHHHHHh
Q psy18239 7 QHSRKNS-QTWISFGLFYSSLEECEALCTRLAVMVN--GRLSCLGSVQHLKNK 56 (97)
Q Consensus 7 ~~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~--G~i~~~g~~~~l~~~ 56 (97)
..+.++. +.|.|+|++|||++++..+|||+++|++ |++...|+|+++.+.
T Consensus 508 ~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 508 KVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 3445543 4589999999999999999999999986 889999999887654
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.13 E-value=6.9e-06 Score=55.30 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=35.9
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
.+.|+|++||+++.+. .||++++|++|++...|+++++..
T Consensus 208 ~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 208 ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp TTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHHhh
Confidence 4789999999999886 599999999999999999988754
No 44
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.12 E-value=4e-06 Score=61.26 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=37.6
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+|+|+|++||+++.+.. ||++++|++|+++..|+++++.+.
T Consensus 539 ~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 539 EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp TTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHHHT
T ss_pred CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 47999999999999876 999999999999999999998764
No 45
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.11 E-value=4.5e-06 Score=60.71 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=37.1
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+++|+|++||+++.+.. ||++++|++|++...|+++++...
T Consensus 525 ~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 525 KDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRELIAK 565 (578)
T ss_dssp TTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEECHHHHHHT
T ss_pred CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 46899999999999865 999999999999999999998764
No 46
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.09 E-value=4.8e-06 Score=60.58 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=39.3
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+.++.+ |+|+|++||+++.+. .||++++|++|++...|+++++...
T Consensus 523 l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 523 LDELQK-NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HHHHHT-TSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHhC-CCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHc
Confidence 444443 899999999999875 6999999999999999999998764
No 47
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.06 E-value=4.4e-06 Score=63.35 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=41.6
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHHh
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~ 56 (97)
..+..+.+.|.|||++|||++++ ..||++++| .+|+++..|+++++...
T Consensus 774 ~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 774 RQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred HHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHhC
Confidence 34555666799999999999999 789999999 68999999999998653
No 48
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.05 E-value=1e-05 Score=61.83 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=41.9
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHHh
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~ 56 (97)
..++.+.+.|.|+|++|||++.+.. ||+++.| .+|++++.|+++++...
T Consensus 507 ~~L~~L~~~G~TvivVtHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~~ 561 (916)
T 3pih_A 507 KTLKKLRDLGNTVIVVEHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLKN 561 (916)
T ss_dssp HHHHHTTTTTCEEEEECCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHHS
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhcC
Confidence 3456666679999999999998865 9999999 89999999999998653
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.97 E-value=6e-06 Score=59.79 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=39.8
Q ss_pred hhhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeC--CEEeEecChHHHHH
Q psy18239 7 QHSRKNS-QTWISFGLFYSSLEECEALCTRLAVMVN--GRLSCLGSVQHLKN 55 (97)
Q Consensus 7 ~~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~--G~i~~~g~~~~l~~ 55 (97)
..+.++. +.|.|+|++|||++++..+||++++|.+ |++...|+++++..
T Consensus 442 ~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 442 RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 3344544 3589999999999999999999999986 67778898887765
No 50
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.95 E-value=1.2e-05 Score=61.69 Aligned_cols=50 Identities=6% Similarity=0.058 Sum_probs=41.6
Q ss_pred hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHHh
Q psy18239 6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~ 56 (97)
+..+..+.+.|.|||++|||++++ ..||++++| .+|+++..|+++++...
T Consensus 888 ~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~ 943 (972)
T 2r6f_A 888 LDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 943 (972)
T ss_dssp HHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHHTC
T ss_pred HHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHHhC
Confidence 344555666789999999999987 579999999 68999999999998653
No 51
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.95 E-value=1.7e-05 Score=61.02 Aligned_cols=49 Identities=6% Similarity=-0.014 Sum_probs=41.1
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHHh
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~ 56 (97)
..+..+.+.|.|||++|||++++ ..||++++| .+|+++..|+++++...
T Consensus 907 ~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~~ 961 (993)
T 2ygr_A 907 NVINGLVDKGNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAV 961 (993)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHHC
T ss_pred HHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHhC
Confidence 34555556789999999999987 579999999 68999999999998653
No 52
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.95 E-value=5.5e-06 Score=65.28 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=38.6
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 58 (97)
.++|+|+++|.++.+.. ||+|++|++|++++.|+++++.++.+
T Consensus 1265 ~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~eLl~~~g 1307 (1321)
T 4f4c_A 1265 EGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHTQLMSEKG 1307 (1321)
T ss_dssp SSSEEEEECSSSSTTTT-CSEEEEESSSSEEEEECHHHHHHCC-
T ss_pred CCCEEEEeccCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCCc
Confidence 47999999999998876 99999999999999999999987643
No 53
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.89 E-value=1.1e-05 Score=63.42 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=37.9
Q ss_pred cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 14 QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
..|+|+|++||+++.+.. |||+++|++|++.+.|+++++...
T Consensus 1218 ~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1218 REGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp SSSSCEEEECSCTTGGGS-CSEEEEEETBEEEEEECHHHHHHS
T ss_pred CCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 358999999999999855 999999999999999999998764
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.89 E-value=1.2e-05 Score=59.02 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=40.0
Q ss_pred hhhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeC--CEEeEecChHHHHH
Q psy18239 7 QHSRKNS-QTWISFGLFYSSLEECEALCTRLAVMVN--GRLSCLGSVQHLKN 55 (97)
Q Consensus 7 ~~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~--G~i~~~g~~~~l~~ 55 (97)
..+..+. +.|.|+|++|||++++..+||++++|++ |++...|+++++.+
T Consensus 512 ~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 512 RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 3344543 3589999999999999999999999986 77778899888765
No 55
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.87 E-value=2.5e-05 Score=53.97 Aligned_cols=39 Identities=8% Similarity=-0.071 Sum_probs=31.9
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSC 46 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 46 (97)
..+..+.+.|.|+|++||+++. ...||++++|.+|+++.
T Consensus 326 ~~l~~l~~~g~tvi~itH~~~~-~~~~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 326 SVLKELERLNKVIVFITHDREF-SEAFDRKLRITGGVVVN 364 (365)
T ss_dssp HHHHGGGGSSSEEEEEESCHHH-HTTCSCEEEEETTEEC-
T ss_pred HHHHHHHhCCCEEEEEecchHH-HHhCCEEEEEECCEEEe
Confidence 3455566678999999999998 66799999999999864
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.79 E-value=6e-05 Score=58.08 Aligned_cols=41 Identities=10% Similarity=0.026 Sum_probs=37.1
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHHHH
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHLKN 55 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l~~ 55 (97)
.|.|+|++||+++++..+||++++|++|++. +.|+++++..
T Consensus 594 ~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 594 CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 5899999999999999999999999999986 6799888754
No 57
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.75 E-value=3.5e-05 Score=59.36 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=40.9
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKN 55 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 55 (97)
..++.+++.|.|||+++|+++.+. .||++++| ++|++++.|+++++..
T Consensus 564 ~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 564 ETLTRLRDLGNTLIVVEHDEDTIE-HADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHHH-TCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred HHHHHHHHcCCEEEEECCCHHHHH-hCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 345566667999999999999876 69999999 6899999999998865
No 58
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.72 E-value=3.3e-05 Score=59.39 Aligned_cols=48 Identities=8% Similarity=0.027 Sum_probs=40.4
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHH
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKN 55 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 55 (97)
..++.+++.|.|||+++|+++++. .||++++| ++|++++.|+++++..
T Consensus 547 ~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 547 ATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp HHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred HHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 345666677999999999999876 59999999 7899999999888643
No 59
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.70 E-value=3e-05 Score=61.01 Aligned_cols=41 Identities=12% Similarity=0.042 Sum_probs=37.3
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 56 (97)
+|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 574 ~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 574 EGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp TTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHHHT
T ss_pred CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 58999999999999876 999999999999999999998653
No 60
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.64 E-value=4.3e-05 Score=55.40 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=35.5
Q ss_pred hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeC--CEEeEecChHHH
Q psy18239 7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVN--GRLSCLGSVQHL 53 (97)
Q Consensus 7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~--G~i~~~g~~~~l 53 (97)
..+.++.+ .|.|+|++|||++++..+|||+++|++ |.....+++..+
T Consensus 426 ~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 426 KAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 34555543 589999999999999999999999986 445555655443
No 61
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.64 E-value=4.7e-05 Score=60.12 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=36.3
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
+++|+|++||.+..+. .||+|++|++|++++.|+.+++..
T Consensus 602 ~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 602 KGRTTIIIAHRLSTIR-NADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp TTSEEEEECSCTTTTT-TCSEEEEEETTEEEEEECHHHHHT
T ss_pred CCCEEEEEcccHHHHH-hCCEEEEeeCCeeeccCCHHHHHH
Confidence 4799999999999875 599999999999999999999864
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.54 E-value=8.2e-05 Score=56.55 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=39.4
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHH
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKN 55 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 55 (97)
.+..+.+.|.|||+++|+++.+ ..||+++.| ++|++++.|+++++..
T Consensus 423 ~l~~L~~~G~TVIvVeHdl~~l-~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 423 ALENLKRGGNSLFVVEHDLDVI-RRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHHHHTTTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 3556666799999999999966 469999999 7899999999888644
No 63
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0002 Score=52.62 Aligned_cols=37 Identities=11% Similarity=-0.107 Sum_probs=31.6
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 43 (97)
..++.+.++|.|+|++||+++++..+||++++|.+|.
T Consensus 262 ~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 262 QIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 3455666678999999999999999999999998765
No 64
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.38 E-value=0.00014 Score=52.65 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=29.8
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNG 42 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 42 (97)
..++.+.+.|.|+|++||+++++..+||++++|++|
T Consensus 199 ~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 199 RAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 345555556899999999999999999999999754
No 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.36 E-value=9.6e-05 Score=56.98 Aligned_cols=38 Identities=16% Similarity=0.069 Sum_probs=31.0
Q ss_pred hccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239 12 NSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS 49 (97)
Q Consensus 12 ~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 49 (97)
+.+.+.++|++|||++++..+||++++|.+|++...|+
T Consensus 944 L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 944 LKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred HHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 34446799999999999999999999999999887664
No 66
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.36 E-value=0.00023 Score=52.29 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=30.0
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNG 42 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 42 (97)
..++.+.++|.|+|++|||++.+..+||++++|.++
T Consensus 269 ~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 269 RVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 345555556899999999999999999999999864
No 67
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.21 E-value=0.00067 Score=41.32 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=26.4
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEE--eCCE
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVM--VNGR 43 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l--~~G~ 43 (97)
+..+.+.|.++|++||++ ++..+||++++| .+|.
T Consensus 106 l~~~~~~~~tiiivsH~~-~~~~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 106 MERYLKKIPQVILVSHDE-ELKDAADHVIRISLENGS 141 (148)
T ss_dssp HHHTGGGSSEEEEEESCG-GGGGGCSEEEEEEEETTE
T ss_pred HHHHHccCCEEEEEEChH-HHHHhCCEEEEEEcCCCe
Confidence 444445578999999999 567899999999 4554
No 68
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.16 E-value=0.00038 Score=50.45 Aligned_cols=35 Identities=9% Similarity=-0.067 Sum_probs=29.2
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 43 (97)
.++++.+ |.|+|++||+++++..+||++.+|.+|.
T Consensus 180 ~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 180 AIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 3455554 8999999999999999999999998653
No 69
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.14 E-value=8e-05 Score=47.17 Aligned_cols=32 Identities=19% Similarity=-0.060 Sum_probs=25.4
Q ss_pred hhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEe
Q psy18239 9 SRKNS-QTWISFGLFYSSLEECEALCTRLAVMV 40 (97)
Q Consensus 9 ~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~ 40 (97)
+.++. +.|.+++++|||++++..+||++++|.
T Consensus 170 l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 170 RIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 34444 358999999999999999999999884
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.14 E-value=0.001 Score=45.94 Aligned_cols=38 Identities=8% Similarity=-0.085 Sum_probs=30.2
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE----eCCEEeEe
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVM----VNGRLSCL 47 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l----~~G~i~~~ 47 (97)
.+..+. ++.++|++||++..+ .+||++++| ++|++...
T Consensus 339 ~L~~l~-~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 339 QLSRLA-DTRQVLVVTHLAQIA-ARAHHHYKVEKQVEDGRTVSH 380 (415)
T ss_dssp HHHHHT-TTSEEEEECSCHHHH-TTCSEEEEEEEEEETTEEEEE
T ss_pred HHHHHh-CCCEEEEEeCcHHHH-hhcCeEEEEEEeccCCceEEE
Confidence 344454 479999999999765 579999999 99987654
No 71
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.94 E-value=0.00046 Score=44.20 Aligned_cols=33 Identities=9% Similarity=-0.080 Sum_probs=24.4
Q ss_pred hhhhccCCcEEEEEeCCHHHH---------Hhhc-CeEEEEeC
Q psy18239 9 SRKNSQTWISFGLFYSSLEEC---------EALC-TRLAVMVN 41 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~---------~~~~-d~i~~l~~ 41 (97)
+..+++.|.|+|++||+++++ ..+| |++++|++
T Consensus 165 ~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 165 NTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 444555699999999999998 6788 99999953
No 72
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.00098 Score=47.49 Aligned_cols=38 Identities=8% Similarity=-0.116 Sum_probs=33.4
Q ss_pred CCcEEEEEeCCHH------HHHhhcCe-----EEEEe-CCEEeEecChHHH
Q psy18239 15 TWISFGLFYSSLE------ECEALCTR-----LAVMV-NGRLSCLGSVQHL 53 (97)
Q Consensus 15 ~~~tiii~tH~~~------~~~~~~d~-----i~~l~-~G~i~~~g~~~~l 53 (97)
.+.+++++||+.+ ++..+||+ +++|+ +|+++ .|++.++
T Consensus 287 ~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 287 LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 4788999999987 88899999 99999 99998 8888765
No 73
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.44 E-value=0.00014 Score=46.85 Aligned_cols=37 Identities=3% Similarity=-0.225 Sum_probs=27.6
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 44 (97)
..+.++.++|.|+|++||+++++..+||+++++. |++
T Consensus 174 ~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~-~~~ 210 (214)
T 1sgw_A 174 KSILEILKEKGIVIISSREELSYCDVNENLHKYS-TKI 210 (214)
T ss_dssp HHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGB-C--
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeC-Ccc
Confidence 3445554457899999999999999999988664 454
No 74
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.40 E-value=0.00097 Score=47.91 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=27.7
Q ss_pred hhhhhccCCcEEEEEeCCHHHH---------HhhcCeEEEEeC
Q psy18239 8 HSRKNSQTWISFGLFYSSLEEC---------EALCTRLAVMVN 41 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~---------~~~~d~i~~l~~ 41 (97)
.+..+++.|.|+|++||+++++ ..+||++++|++
T Consensus 167 ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 167 LVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp HHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 3455555689999999999984 566999999988
No 75
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.37 E-value=0.0038 Score=44.74 Aligned_cols=34 Identities=0% Similarity=-0.223 Sum_probs=26.7
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 43 (97)
.+..+.+ +.+||++||+++.+. +||++++|.++.
T Consensus 441 ~l~~~~~-~~~vi~itH~~~~~~-~~d~~~~~~~~~ 474 (517)
T 4ad8_A 441 QLSRLAD-TRQVLVVTHLAQIAA-RAHHHYKVEKQV 474 (517)
T ss_dssp HHHHHHH-HSEEEEECCCHHHHH-HSSEEEEEECCE
T ss_pred HHHHHhC-CCEEEEEecCHHHHH-hCCEEEEEeccc
Confidence 3455555 789999999999776 599999996553
No 76
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.09 E-value=0.00041 Score=43.01 Aligned_cols=44 Identities=11% Similarity=-0.069 Sum_probs=31.4
Q ss_pred hhhhccCCcEEEEEeCC-HHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 9 SRKNSQTWISFGLFYSS-LEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~-~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
+....+.+.++|.+||. ++++..+|++++ ++|++...|+++.+.
T Consensus 139 ~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 139 FESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 44444557889999999 999999999998 999999999887653
No 77
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.71 E-value=0.0025 Score=45.82 Aligned_cols=35 Identities=9% Similarity=-0.057 Sum_probs=29.7
Q ss_pred hhhhccCCcEEEEEeCCH----------HHHHhhcCeEEEEeCCE
Q psy18239 9 SRKNSQTWISFGLFYSSL----------EECEALCTRLAVMVNGR 43 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~----------~~~~~~~d~i~~l~~G~ 43 (97)
+..+++.|.|+|+++|+. ..+..+||++++|.+|+
T Consensus 400 l~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 400 TGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 445556789999999999 77888999999998886
No 78
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.68 E-value=0.0061 Score=40.32 Aligned_cols=37 Identities=5% Similarity=0.054 Sum_probs=27.6
Q ss_pred hhhhhcc-CCcEEEEEeCCH--H--------------------HHHhhcCeEEEEeCCEE
Q psy18239 8 HSRKNSQ-TWISFGLFYSSL--E--------------------ECEALCTRLAVMVNGRL 44 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~--~--------------------~~~~~~d~i~~l~~G~i 44 (97)
.++.+.+ .+++||+++|+. + .+..+||++++|.+|+.
T Consensus 178 ~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 178 KLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 3455544 489999999995 4 67889999999998874
No 79
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.55 E-value=0.00039 Score=47.82 Aligned_cols=35 Identities=6% Similarity=0.153 Sum_probs=31.7
Q ss_pred EEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 18 SFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 18 tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
|++++|||++ ..+||++.+|.+|+++..++.+++.
T Consensus 220 tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 220 TVLLESDNVN--DPIGDEVRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp EEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred EEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHHcC
Confidence 8999999999 6789999999999999998887763
No 80
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.46 E-value=0.0078 Score=37.76 Aligned_cols=36 Identities=3% Similarity=-0.220 Sum_probs=25.4
Q ss_pred hhhhhc-cCCcEEEEEeCCH--------HHHHhhcCeEEEEeCCE
Q psy18239 8 HSRKNS-QTWISFGLFYSSL--------EECEALCTRLAVMVNGR 43 (97)
Q Consensus 8 ~~~~~~-~~~~tiii~tH~~--------~~~~~~~d~i~~l~~G~ 43 (97)
.+..+. +.+.++|+++|+. ..+..+||++++|.+..
T Consensus 149 ~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 149 YLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 344443 4589999999999 45888999999997643
No 81
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.44 E-value=0.014 Score=39.64 Aligned_cols=32 Identities=6% Similarity=-0.079 Sum_probs=24.5
Q ss_pred hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe
Q psy18239 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMV 40 (97)
Q Consensus 8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~ 40 (97)
.+..+.+.+.++|++||+.+ +..+||+++.|.
T Consensus 296 ~l~~~~~~~~~vi~~sH~~~-~~~~~d~~~~l~ 327 (339)
T 3qkt_A 296 IMERYLKKIPQVILVSHDEE-LKDAADHVIRIS 327 (339)
T ss_dssp HHHHTGGGSSEEEEEESCGG-GGGGCSEEEEEE
T ss_pred HHHHHHhcCCEEEEEEChHH-HHHhCCEEEEEE
Confidence 34444555789999999965 677899999885
No 82
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.99 E-value=0.012 Score=36.97 Aligned_cols=36 Identities=8% Similarity=-0.103 Sum_probs=23.5
Q ss_pred hhhhhc-cCCcEEEEEeCCH----HHHHhhcCeEEEEeCCE
Q psy18239 8 HSRKNS-QTWISFGLFYSSL----EECEALCTRLAVMVNGR 43 (97)
Q Consensus 8 ~~~~~~-~~~~tiii~tH~~----~~~~~~~d~i~~l~~G~ 43 (97)
.+..+. +.|.|+|++||.. ..+..+||++++|.+|+
T Consensus 161 ~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 161 DLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 344443 3589999999954 44889999999998753
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.77 E-value=0.02 Score=39.54 Aligned_cols=33 Identities=6% Similarity=-0.149 Sum_probs=28.4
Q ss_pred cEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239 17 ISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53 (97)
Q Consensus 17 ~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l 53 (97)
.++|++||. +. .||++++|++|++...|+++++
T Consensus 322 qt~i~~th~-~~---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 322 QAIVTGTEL-AP---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEESSC-CT---TCSEEEEEETTEEEECCCTTTS
T ss_pred cEEEEEEec-cc---cCCEEEEEECCEEEecCCHHHH
Confidence 689999994 43 7999999999999999988765
No 84
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.73 E-value=0.0095 Score=36.47 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=18.6
Q ss_pred hhhhccCCcEEEEEeCCHHHHHh
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEA 31 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~ 31 (97)
+..+.++|.|+|++||+++++..
T Consensus 142 l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 142 IKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp STTHHHHTCSEEEEECSHHHHHH
T ss_pred hhhHHhcCCcEEEEeCCHHHhhh
Confidence 44455568999999999999876
No 85
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.37 E-value=0.058 Score=42.00 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=30.2
Q ss_pred hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEe--EecChHH
Q psy18239 8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLS--CLGSVQH 52 (97)
Q Consensus 8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~--~~g~~~~ 52 (97)
.+..+.+. |.++|++||+++.+..++|++.+++ |++. ..|++.+
T Consensus 893 il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~-g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 893 VVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRL-GHMACMVENECED 939 (1022)
T ss_dssp HHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEE-EEEEEC-------
T ss_pred HHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeec-CeEEEEEecCccc
Confidence 34555554 8999999999999999999998875 7776 4455444
No 86
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.16 E-value=0.0015 Score=46.24 Aligned_cols=36 Identities=3% Similarity=0.050 Sum_probs=32.2
Q ss_pred EEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 18 SFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 18 tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
|++++|||++ ..+||++++|.+|+++..++++++..
T Consensus 309 tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 309 TVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp EEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred EEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHccC
Confidence 8999999999 67899999999999999998887643
No 87
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.76 E-value=0.063 Score=36.08 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=23.0
Q ss_pred CCcEEEEEeCCHHHHHhhcCeE--EEEeCCEE
Q psy18239 15 TWISFGLFYSSLEECEALCTRL--AVMVNGRL 44 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i--~~l~~G~i 44 (97)
.+.++|++||+.. +..+||++ ++|.+|..
T Consensus 271 ~~~~vi~~tH~~~-~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 271 KHTQFIVITHNKI-VMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp TTSEEEEECCCTT-GGGGCSEEEEEEESSSCE
T ss_pred CCCeEEEEECCHH-HHhhCceEEEEEEeCCEE
Confidence 4789999999965 56789987 77777764
No 88
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.68 E-value=0.0092 Score=45.99 Aligned_cols=43 Identities=14% Similarity=-0.005 Sum_probs=33.0
Q ss_pred hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHH
Q psy18239 9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQH 52 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 52 (97)
+..+.+ .|.++|++||+.+. ..+||++..+.+|++...++.++
T Consensus 767 l~~l~~~~g~~vl~aTH~~el-~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 767 SEYIATKIGAFCMFATHFHEL-TALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHTTCCEEEEEESCGGG-GGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHhcCCCEEEEEcCcHHH-HHHhcccceeEeeEEEEEecCCc
Confidence 344444 48999999999664 57899999999999887765544
No 89
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=91.31 E-value=0.2 Score=34.24 Aligned_cols=25 Identities=8% Similarity=-0.019 Sum_probs=21.2
Q ss_pred CcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239 16 WISFGLFYSSLEECEALCTRLAVMVN 41 (97)
Q Consensus 16 ~~tiii~tH~~~~~~~~~d~i~~l~~ 41 (97)
+.+++++||++. +..+||++++|.+
T Consensus 336 ~~~vi~~th~~~-~~~~~d~~~~l~k 360 (371)
T 3auy_A 336 IPQMIIITHHRE-LEDVADVIINVKK 360 (371)
T ss_dssp CSEEEEEESCGG-GGGGCSEEEEEEE
T ss_pred CCeEEEEEChHH-HHhhCCEEEEEEe
Confidence 468999999987 6788999999973
No 90
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=91.17 E-value=0.35 Score=33.65 Aligned_cols=31 Identities=10% Similarity=-0.037 Sum_probs=23.1
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMV 40 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~ 40 (97)
+....+.+.++|++||+... ...||+++.+.
T Consensus 380 l~~~~~~~~~~ii~th~~~~-~~~~d~~~~~~ 410 (430)
T 1w1w_A 380 IRRHRNPDLQFIVISLKNTM-FEKSDALVGVY 410 (430)
T ss_dssp HHHHCBTTBEEEEECSCHHH-HTTCSEEEEEE
T ss_pred HHHHhcCCCEEEEEECCHHH-HHhCCEEEEEE
Confidence 34444447899999999765 56799998885
No 91
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.33 E-value=0.17 Score=31.81 Aligned_cols=28 Identities=7% Similarity=0.059 Sum_probs=17.6
Q ss_pred CCcEEEEEeCCHHHHHh-------------------hcCeEEEEeCC
Q psy18239 15 TWISFGLFYSSLEECEA-------------------LCTRLAVMVNG 42 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~-------------------~~d~i~~l~~G 42 (97)
.+.++|+++|....... +||.+++|.++
T Consensus 163 ~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 163 FGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 48999999997765443 79999999865
No 92
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.50 E-value=0.22 Score=30.83 Aligned_cols=34 Identities=6% Similarity=-0.161 Sum_probs=26.1
Q ss_pred hhhhcc-CCcEEEEEeCCHH-------------HHHhhcCeEEEEeCC
Q psy18239 9 SRKNSQ-TWISFGLFYSSLE-------------ECEALCTRLAVMVNG 42 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH~~~-------------~~~~~~d~i~~l~~G 42 (97)
+..+.+ .+.++|+++|... .+..+||.+++|.+.
T Consensus 138 L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 138 LLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 444443 4899999999865 577899999999765
No 93
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=86.03 E-value=0.044 Score=37.20 Aligned_cols=58 Identities=12% Similarity=-0.008 Sum_probs=36.1
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec-ChHHHHHhhcCceEEEEEe
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG-SVQHLKNKFAVGYQLQIKF 67 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g-~~~~l~~~~~~~~~~~~~~ 67 (97)
+......+.++++++|+.+ +...|||++.|.+|.....+ +.+.+.........+.+.+
T Consensus 258 l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~~~~~~~~~~i~~~i~~~id~vv~~ 316 (330)
T 2pt7_A 258 YNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSNSAARNIKFESLIEGFKDLIDMIVHI 316 (330)
T ss_dssp HHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTSGGGTTSCHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhcCCCEEEEEEcccH-HHHHhhhheehhcCCcccCCCCHHHHHHHHHHhCCEEEEE
Confidence 3444433457999999999 67789999999888643222 3444444444444444443
No 94
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=85.14 E-value=1.9 Score=26.46 Aligned_cols=33 Identities=12% Similarity=-0.000 Sum_probs=22.8
Q ss_pred hhhhccCCcEEEEEeCCHHHHHhhcCeEEEE--eCCE
Q psy18239 9 SRKNSQTWISFGLFYSSLEECEALCTRLAVM--VNGR 43 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l--~~G~ 43 (97)
+.+..+ +.++|++||+... ..+||+++.+ .+|.
T Consensus 111 l~~~~~-~~~~ivith~~~~-~~~ad~i~~v~~~~g~ 145 (173)
T 3kta_B 111 IKESSK-ESQFIVITLRDVM-MANADKIIGVSMRDGV 145 (173)
T ss_dssp HHHHTT-TSEEEEECSCHHH-HTTCSEEEEEEEETTE
T ss_pred HHHhcc-CCEEEEEEecHHH-HHhCCEEEEEEecCCE
Confidence 334433 4689999999765 5689999855 4564
No 95
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=84.68 E-value=1.2 Score=27.35 Aligned_cols=22 Identities=0% Similarity=-0.182 Sum_probs=17.7
Q ss_pred cCCcEEEEEe---CCHHHHHhhcCe
Q psy18239 14 QTWISFGLFY---SSLEECEALCTR 35 (97)
Q Consensus 14 ~~~~tiii~t---H~~~~~~~~~d~ 35 (97)
+.+.++|+++ |+.+.+..+|++
T Consensus 128 ~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 128 DPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp CTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred cCCCeEEEEEccCCCchHHHHHHhc
Confidence 3567788887 589999999998
No 96
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=84.36 E-value=0.19 Score=38.14 Aligned_cols=40 Identities=13% Similarity=-0.014 Sum_probs=30.3
Q ss_pred hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239 8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 48 (97)
.+..+.+ .|.++|++||+.+.+ .+||++..+.+|++....
T Consensus 711 ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 711 CAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEEEEEE
T ss_pred HHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEEEEEE
Confidence 3445555 489999999999765 589998888888876654
No 97
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=83.00 E-value=1.1 Score=28.56 Aligned_cols=32 Identities=22% Similarity=0.082 Sum_probs=24.0
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN 55 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 55 (97)
++.+|++++|+++++.. |+ +.+| .++++++..
T Consensus 129 ~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 129 HARSIFILPPSKIELDR---RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHHHH
T ss_pred CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHHHH
Confidence 57899999999998876 32 6666 567776654
No 98
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=82.94 E-value=0.96 Score=28.32 Aligned_cols=29 Identities=7% Similarity=-0.220 Sum_probs=22.0
Q ss_pred ccCCcEEEEEeCCHHH--------HHhhcCeEEEEeC
Q psy18239 13 SQTWISFGLFYSSLEE--------CEALCTRLAVMVN 41 (97)
Q Consensus 13 ~~~~~tiii~tH~~~~--------~~~~~d~i~~l~~ 41 (97)
++.+.++++++|.... +.++||.++.|..
T Consensus 160 ~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 160 AGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 3558999999998776 4678899999864
No 99
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=82.92 E-value=0.64 Score=29.39 Aligned_cols=23 Identities=0% Similarity=-0.132 Sum_probs=12.3
Q ss_pred hhhhhhccCCcEEEEEeCCHHHHHh
Q psy18239 7 QHSRKNSQTWISFGLFYSSLEECEA 31 (97)
Q Consensus 7 ~~~~~~~~~~~tiii~tH~~~~~~~ 31 (97)
..+..+ ++|.++| +|||++++..
T Consensus 141 ~~l~~l-~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 141 MFLTRL-GFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp HHHTTB-CTTCEEE-EEEC------
T ss_pred HHHHHh-cCCCEEE-EECCHHHHhC
Confidence 334455 4588999 9999987664
No 100
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=82.39 E-value=0.13 Score=35.30 Aligned_cols=32 Identities=6% Similarity=-0.145 Sum_probs=25.4
Q ss_pred hhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239 10 RKNSQTWISFGLFYSSLEECEALCTRLAVMVNG 42 (97)
Q Consensus 10 ~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 42 (97)
.+..+.|.++++++|+.+.+ ..+||++.|..|
T Consensus 215 ~~~~~~G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 215 LTAAETGHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHhcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 34455689999999999987 679999888554
No 101
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=76.10 E-value=0.15 Score=34.39 Aligned_cols=30 Identities=10% Similarity=-0.073 Sum_probs=23.0
Q ss_pred eCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239 23 YSSLEECEALCTRLAVMVNGRLSCLGSVQHLK 54 (97)
Q Consensus 23 tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 54 (97)
||++..+ .+||++ +|++|+++..|+++++.
T Consensus 236 tH~~~~~-~~aD~i-vl~~G~iv~~g~~~el~ 265 (305)
T 2v9p_A 236 HSRVQTF-RFEQPC-TDESGEQPFNITDADWK 265 (305)
T ss_dssp TTTEEEE-ECCCCC-CCC---CCCCCCHHHHH
T ss_pred hCCHHHH-HhCCEE-EEeCCEEEEeCCHHHHH
Confidence 7887754 579999 99999999999999883
No 102
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=72.12 E-value=2.5 Score=29.48 Aligned_cols=36 Identities=6% Similarity=-0.062 Sum_probs=25.6
Q ss_pred hhhhhcc-CCcEEEEEeCCH-------------------HHHHhhcCeEEEEeCCE
Q psy18239 8 HSRKNSQ-TWISFGLFYSSL-------------------EECEALCTRLAVMVNGR 43 (97)
Q Consensus 8 ~~~~~~~-~~~tiii~tH~~-------------------~~~~~~~d~i~~l~~G~ 43 (97)
.+..+.+ .+.++|+++|.. ..+...+|.+++|.+++
T Consensus 309 ~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 309 ALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 3555544 489999999982 23467789999998764
No 103
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=70.73 E-value=0.57 Score=30.66 Aligned_cols=27 Identities=7% Similarity=-0.199 Sum_probs=21.7
Q ss_pred cCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239 14 QTWISFGLFYSSLEECEALCTRLAVMVN 41 (97)
Q Consensus 14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~ 41 (97)
..|.++++++|+.+ +...||+++.|..
T Consensus 121 ~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 121 ETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp HTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred ccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 45889999999987 5677899877753
No 104
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=58.19 E-value=7.8 Score=25.78 Aligned_cols=30 Identities=13% Similarity=0.029 Sum_probs=24.6
Q ss_pred CCcEEEEEeC---------CHHHHHhhcCeEEEEeCCEE
Q psy18239 15 TWISFGLFYS---------SLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 15 ~~~tiii~tH---------~~~~~~~~~d~i~~l~~G~i 44 (97)
.+.+++++|| .++.+..++..+.++..|+.
T Consensus 246 ~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 246 VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 4889999999 56677777888999999864
No 105
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=53.95 E-value=0.25 Score=34.49 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=27.8
Q ss_pred ccCCcEEEEEeCCHHHHHhhcCeEE-EEeCC-EEeEecC
Q psy18239 13 SQTWISFGLFYSSLEECEALCTRLA-VMVNG-RLSCLGS 49 (97)
Q Consensus 13 ~~~~~tiii~tH~~~~~~~~~d~i~-~l~~G-~i~~~g~ 49 (97)
.+.|.+++ +|.+..+..+|+++. +|.+| +.+..++
T Consensus 171 ~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~ 207 (392)
T 1ni3_A 171 SRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGD 207 (392)
T ss_dssp CCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSC
T ss_pred HhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCC
Confidence 44566653 999999999999998 99999 7776554
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=50.93 E-value=4.7 Score=27.36 Aligned_cols=33 Identities=9% Similarity=-0.050 Sum_probs=13.8
Q ss_pred CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEe
Q psy18239 15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCL 47 (97)
Q Consensus 15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 47 (97)
.+.++|+++|........++.......|++...
T Consensus 275 ~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~ 307 (349)
T 1pzn_A 275 YDIAVFVTNQVQARPDAFFGDPTRPIGGHILAH 307 (349)
T ss_dssp TTCEEEEEEECC---------------CCCCCT
T ss_pred cCcEEEEEcccccccccccCCccccCCcceEee
Confidence 589999999988765543334444555554433
No 107
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=50.75 E-value=7.1 Score=27.30 Aligned_cols=36 Identities=6% Similarity=-0.078 Sum_probs=26.0
Q ss_pred hhhhcc-CCcEEEEEeC---------C--HH--------HHHhhcCeEEEEeCCEE
Q psy18239 9 SRKNSQ-TWISFGLFYS---------S--LE--------ECEALCTRLAVMVNGRL 44 (97)
Q Consensus 9 ~~~~~~-~~~tiii~tH---------~--~~--------~~~~~~d~i~~l~~G~i 44 (97)
++.+.+ .+.++|+++| + +. .+.+.||.+++|.++..
T Consensus 346 Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 346 LKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 455543 4899999999 2 22 56788999999987653
No 108
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=48.89 E-value=2.5 Score=25.29 Aligned_cols=18 Identities=6% Similarity=-0.280 Sum_probs=13.0
Q ss_pred hhccCCcEEEEEeCCHHH
Q psy18239 11 KNSQTWISFGLFYSSLEE 28 (97)
Q Consensus 11 ~~~~~~~tiii~tH~~~~ 28 (97)
...+++.++|++||....
T Consensus 128 ~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 128 YRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHTTCEEEEECCCCSC
T ss_pred HHHHcCCCEEEEcCCChh
Confidence 344468899999997643
No 109
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=47.74 E-value=6.2 Score=30.61 Aligned_cols=37 Identities=8% Similarity=-0.135 Sum_probs=22.7
Q ss_pred hhhhc-cCCcEEEEEeCCHHHHHhhcCeEEE-EeCCEEeE
Q psy18239 9 SRKNS-QTWISFGLFYSSLEECEALCTRLAV-MVNGRLSC 46 (97)
Q Consensus 9 ~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~-l~~G~i~~ 46 (97)
+..+. +.|.++|++||+++.+ .++++..- +.++.+.+
T Consensus 778 l~~L~~~~g~tvl~vTH~~el~-~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 778 LEYFIRDVKSLTLFVTHYPPVC-ELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHTTCCEEEEECSCGGGG-GHHHHTTTTEEEEEEEE
T ss_pred HHHHHHhcCCeEEEEeCcHHHH-HHHhhcccceEEEEEEE
Confidence 34443 3589999999998755 56766531 33444433
No 110
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=42.43 E-value=19 Score=24.63 Aligned_cols=30 Identities=13% Similarity=0.029 Sum_probs=24.2
Q ss_pred CCcEEEEEeC---------CHHHHHhhcCeEEEEeCCEE
Q psy18239 15 TWISFGLFYS---------SLEECEALCTRLAVMVNGRL 44 (97)
Q Consensus 15 ~~~tiii~tH---------~~~~~~~~~d~i~~l~~G~i 44 (97)
.+.++|++|| .++.+..++..+.++..|..
T Consensus 303 ~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 303 VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 4899999999 45667777888999988864
No 111
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=39.45 E-value=16 Score=27.64 Aligned_cols=31 Identities=13% Similarity=-0.049 Sum_probs=19.8
Q ss_pred cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEe
Q psy18239 14 QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCL 47 (97)
Q Consensus 14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 47 (97)
+.|.++|++||+.+.+. ++ ...+.++.+...
T Consensus 686 ~~g~~vl~~TH~~~l~~-~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 686 ERRAYTLFATHYFELTA-LG--LPRLKNLHVAAR 716 (765)
T ss_dssp HHTCEEEEECCCHHHHT-CC--CTTEEEEEEEEE
T ss_pred hCCCEEEEEeCCHHHHH-hh--hhcceEEEEEEE
Confidence 35899999999988754 55 223344444443
No 112
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=38.33 E-value=12 Score=23.99 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=13.4
Q ss_pred hhhhhc-cCCcEEEEEeCCHHHHH
Q psy18239 8 HSRKNS-QTWISFGLFYSSLEECE 30 (97)
Q Consensus 8 ~~~~~~-~~~~tiii~tH~~~~~~ 30 (97)
.+..+. +.|.|+|+++|+.....
T Consensus 162 ~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 162 RMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHHHHHCCEEEEEEEC-----
T ss_pred HHHHHHHHcCCEEEEEecCCCccc
Confidence 345553 45899999999987654
No 113
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=37.42 E-value=25 Score=23.83 Aligned_cols=36 Identities=6% Similarity=-0.204 Sum_probs=25.2
Q ss_pred ccCCcEEEEEeCCHH----------------HHHhhcCeEEEEeCCEEeEec
Q psy18239 13 SQTWISFGLFYSSLE----------------ECEALCTRLAVMVNGRLSCLG 48 (97)
Q Consensus 13 ~~~~~tiii~tH~~~----------------~~~~~~d~i~~l~~G~i~~~g 48 (97)
++.+.++|+++|... .+..+||.++.+.+++....|
T Consensus 185 ~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 185 NNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp HHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred HHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 345899999999643 256789988888876554333
No 114
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=35.64 E-value=60 Score=19.91 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=25.1
Q ss_pred hhhhccCCcEEEEEeCCH----------------------HHHHhhcCeEEEEeCCE
Q psy18239 9 SRKNSQTWISFGLFYSSL----------------------EECEALCTRLAVMVNGR 43 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~~----------------------~~~~~~~d~i~~l~~G~ 43 (97)
+..+.+...++++||.+. ..++..||+++++-.|.
T Consensus 119 l~~l~~~~~~~vlVsNEVG~GiVP~~~~~R~frD~~G~lnq~lA~~ad~V~lvvaGi 175 (180)
T 1c9k_A 119 IAACQRCPAKVVLVTNEVGMGIVPENRLARHFRDIAGRVNQRLAAAADEVWLVVSGI 175 (180)
T ss_dssp HHHHHHCCSEEEEECCCCCSSCCCSSHHHHHHHHHHHHHHHHHHHHCSEEEEEETTE
T ss_pred HHHHHccCCCEEEEEccccCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
Confidence 334555567899999854 44566799999988875
No 115
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=27.89 E-value=64 Score=18.97 Aligned_cols=32 Identities=0% Similarity=-0.177 Sum_probs=19.1
Q ss_pred hhccCCcEEEEEeC-CHHHHHhhcCeEEEEeCC
Q psy18239 11 KNSQTWISFGLFYS-SLEECEALCTRLAVMVNG 42 (97)
Q Consensus 11 ~~~~~~~tiii~tH-~~~~~~~~~d~i~~l~~G 42 (97)
..++.|..++.+|. .-..+.+++|.++.+..+
T Consensus 118 ~ak~~g~~vi~IT~~~~s~la~~ad~~l~~~~~ 150 (183)
T 2xhz_A 118 VLKRLHVPLICITGRPESSMARAADVHLCVKVA 150 (183)
T ss_dssp HHHTTTCCEEEEESCTTSHHHHHSSEEEECCCS
T ss_pred HHHHCCCCEEEEECCCCChhHHhCCEEEEeCCC
Confidence 34445655555544 445677788888777643
No 116
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=27.54 E-value=70 Score=18.88 Aligned_cols=35 Identities=6% Similarity=-0.108 Sum_probs=22.7
Q ss_pred hhhhccCCcEEEEEeCC-HHHHHhhcCeEEEEeCCE
Q psy18239 9 SRKNSQTWISFGLFYSS-LEECEALCTRLAVMVNGR 43 (97)
Q Consensus 9 ~~~~~~~~~tiii~tH~-~~~~~~~~d~i~~l~~G~ 43 (97)
.+..++.|..++.+|.+ -..+.+++|.++.+..+.
T Consensus 99 ~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 134 (186)
T 1m3s_A 99 AAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSP 134 (186)
T ss_dssp HHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCS
T ss_pred HHHHHHCCCEEEEEECCCCCchHHhCCEEEEeCCcc
Confidence 33445567766666664 456778899888776543
No 117
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=24.14 E-value=4.9 Score=24.81 Aligned_cols=23 Identities=9% Similarity=-0.057 Sum_probs=13.3
Q ss_pred eCCHHHHHhhcCeEEEEeCCEEeEe
Q psy18239 23 YSSLEECEALCTRLAVMVNGRLSCL 47 (97)
Q Consensus 23 tH~~~~~~~~~d~i~~l~~G~i~~~ 47 (97)
+|+.+ ..+.|++..+.+|++...
T Consensus 146 sh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 146 PKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred CCCCc--hHHHHHHeecCCcEEEEe
Confidence 38763 245556655667776553
No 118
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=24.10 E-value=9.3 Score=26.13 Aligned_cols=25 Identities=8% Similarity=-0.205 Sum_probs=19.3
Q ss_pred cCCcEEEEEeCCHHHHHhhcCeEEEE
Q psy18239 14 QTWISFGLFYSSLEECEALCTRLAVM 39 (97)
Q Consensus 14 ~~~~tiii~tH~~~~~~~~~d~i~~l 39 (97)
..|.+++.++|+.+ +...++|++.|
T Consensus 232 ~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 232 ETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp TTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred hcCCEEEEEECcch-HHHHHHHHHHh
Confidence 45789999999966 67778887655
No 119
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=23.58 E-value=67 Score=18.94 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=5.1
Q ss_pred HHHhhcCeEEEE
Q psy18239 28 ECEALCTRLAVM 39 (97)
Q Consensus 28 ~~~~~~d~i~~l 39 (97)
.+.+++|.++.+
T Consensus 150 ~L~~~ad~~l~~ 161 (188)
T 1tk9_A 150 MMNKLCDHNLVV 161 (188)
T ss_dssp THHHHCSEEEEE
T ss_pred chHHcCCEEEEe
Confidence 334444444433
No 120
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=23.27 E-value=68 Score=19.44 Aligned_cols=33 Identities=6% Similarity=-0.082 Sum_probs=21.9
Q ss_pred hhccCCcEEEEEeCC-HHHHHhhcCeEEEEeCCE
Q psy18239 11 KNSQTWISFGLFYSS-LEECEALCTRLAVMVNGR 43 (97)
Q Consensus 11 ~~~~~~~tiii~tH~-~~~~~~~~d~i~~l~~G~ 43 (97)
..++.|..+|.+|.+ -..+.++||.++.+..+.
T Consensus 111 ~ak~~g~~vI~IT~~~~s~La~~ad~~l~~~~~~ 144 (200)
T 1vim_A 111 KAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKM 144 (200)
T ss_dssp HHHHHTCEEEEEESCTTSHHHHHCSEEEECCSSC
T ss_pred HHHHCCCeEEEEECCCCChHHHhCCEEEEECCcc
Confidence 344456666666654 466778899988876654
No 121
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.38 E-value=97 Score=18.22 Aligned_cols=34 Identities=6% Similarity=-0.001 Sum_probs=21.7
Q ss_pred hhhccCCcEEEEEeC-CHHHHHhhcCeEEEEeCCE
Q psy18239 10 RKNSQTWISFGLFYS-SLEECEALCTRLAVMVNGR 43 (97)
Q Consensus 10 ~~~~~~~~tiii~tH-~~~~~~~~~d~i~~l~~G~ 43 (97)
+..++.|..++.+|. .-..+.+++|.++.+..+.
T Consensus 108 ~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 142 (187)
T 3sho_A 108 AGAAERGVPTMALTDSSVSPPARIADHVLVAATRG 142 (187)
T ss_dssp HHHHHTTCCEEEEESCTTSHHHHHCSEEEECCCCC
T ss_pred HHHHHCCCCEEEEeCCCCCcchhhCcEEEEecCCC
Confidence 334455666655554 4566778899888876543
Done!