RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18239
(97 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 45.2 bits (108), Expect = 3e-07
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 22 FYSS--LEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57
SS + E E LC R+A++ NG + G+V+ LK ++
Sbjct: 200 LVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 237
>3csk_A Probable dipeptidyl-peptidase 3; Zn-hydrolase, aminodipeptidase,
hexxgh-motif, aminopeptidase hydrolase, metal-binding,
metalloprotease; 1.95A {Saccharomyces cerevisiae}
Length = 711
Score = 34.1 bits (77), Expect = 0.004
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 11 KNSQTWIS-FGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKF 67
K +TW S FG EEC A + ++ N ++ + ++++ V Y ++
Sbjct: 499 KVGETWGSKFGQLAGPFEECRAEVIAMFLLTNKKILDIFGFHDVESQDKVIYAGYLQM 556
>3fvy_A Dipeptidyl-peptidase 3; SGC, DPP3, alternative splicing,
aminopeptidase, cytoplasm, hydrolase, metal-binding,
metalloprotease, phosphoprotein; 1.90A {Homo sapiens}
PDB: 3t6b_A 3t6j_A
Length = 728
Score = 31.4 bits (70), Expect = 0.033
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 11 KNSQTWIS-FGLFYSSLEECEALCTRLAVMVNGRL 44
++ +TW S F SS EEC A L + ++ ++
Sbjct: 492 RSGETWDSKFSTIASSYEECRAESVGLYLCLHPQV 526
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding
nucleotide binding M binding, nucleus; HET: DNA TTD DTP;
3.34A {Homo sapiens}
Length = 517
Score = 27.7 bits (61), Expect = 0.53
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 24 SSLEECEALCTRLAVMVNGRL---SCLGSVQHLKNKFA 58
+ EE +LC L + L G +K K
Sbjct: 415 NKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNV 452
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family
DNA polymerase, translesion DNA synthesis, lesion
bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7
PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Length = 459
Score = 27.2 bits (60), Expect = 0.92
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 24 SSLEECEALCTRLAVMVNGRL---SCLGSVQHLKNKFA 58
+ EE +LC L + L G +K K
Sbjct: 359 NKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNV 396
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 2.1
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 16/77 (20%)
Query: 14 QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQ 73
Q + F +F+ +L+ C + T L ++ Q L + + + +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEML-----------QKLLYQIDPNWTSRSDHSSNIKL 225
Query: 74 NIKWFVAAYLKGNTRRL 90
I ++ RRL
Sbjct: 226 RIHS-----IQAELRRL 237
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 25.6 bits (57), Expect = 2.9
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 26 LEECEALCTRLAVMVNGRLSCLGSVQHL 53
+EE A +++ ++ +G+ G+V+ +
Sbjct: 223 IEEITANFSKILLLKDGQSIQQGAVEDI 250
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 4.2
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 49 SVQHLKNKFAVGY-------QLQIKFPPTTQQNIKWFVAAYLKGN 86
+ L KF +GY +F + F YL+GN
Sbjct: 56 TPAELVGKF-LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
Score = 25.0 bits (54), Expect = 5.8
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 26/59 (44%)
Query: 13 SQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTT 71
+ +W SF + S+ + + V+ F +G + +P T+
Sbjct: 286 TDSWESF---FVSVRKA------ITVL-----------------FFIGVRCYEAYPNTS 318
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 24.6 bits (54), Expect = 6.5
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 30 EALCTRLAVMVNGRLSCLGSVQHL 53
+ +C +AV+ NG L +V +
Sbjct: 228 KRICDCVAVISNGELIEQDTVSEV 251
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase,
DNA-directed D polymerase, DNA replication; HET: DNA;
1.9A {Escherichia coli} SCOP: d.240.1.1
Length = 115
Score = 23.9 bits (52), Expect = 7.9
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 24 SSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQ 73
ECEA+ RL + RL+ + + +++KF Q
Sbjct: 18 HHWSECEAIIERLYPELERRLA-----KVKPDLLIARQGVKLKFDDFQQT 62
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 24.0 bits (53), Expect = 9.3
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 27 EECEALCTRLAVMVNGRLSCLGSVQHL---KNKF 57
E L +AVM+NGR+ G ++ L KN
Sbjct: 188 IEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE 221
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.135 0.425
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,406,542
Number of extensions: 64366
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 15
Length of query: 97
Length of database: 6,701,793
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,942,770
Effective search space: 168054180
Effective search space used: 168054180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.4 bits)