RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18239
(97 letters)
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 39.6 bits (92), Expect = 1e-05
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 1 MRIDRCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58
+ + ++ SQ ++ + ++ E E LC R+A++ NG + G+V+ LK ++
Sbjct: 168 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 32.6 bits (74), Expect = 0.004
Identities = 8/59 (13%), Positives = 20/59 (33%)
Query: 1 MRIDRCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAV 59
+ + + +K +Q + L + + V+ G++ G L + V
Sbjct: 174 LVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMV 232
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 31.7 bits (72), Expect = 0.008
Identities = 7/84 (8%), Positives = 29/84 (34%), Gaps = 17/84 (20%)
Query: 7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIK 66
+ ++ ++ + + + + + + + G++ G + +
Sbjct: 190 RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN---------- 239
Query: 67 FPPTTQQNIKWFVAAYLKGNTRRL 90
P + + +LKG+ ++L
Sbjct: 240 --PQSP-----RLQQFLKGSLKKL 256
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 30.5 bits (69), Expect = 0.022
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 26 LEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56
E + R+AVM G+L +GS + +
Sbjct: 197 QVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 29.5 bits (66), Expect = 0.044
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 1 MRIDRCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53
R + SR + + + E L ++ V+ GR++ +G L
Sbjct: 166 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 218
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 29.3 bits (65), Expect = 0.047
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 25 SLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56
E + R+AV+++G+L +G + + K
Sbjct: 187 DQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 29.1 bits (65), Expect = 0.050
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 25 SLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56
E + R+AVM G L +GS + +K
Sbjct: 199 DQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 29.1 bits (65), Expect = 0.062
Identities = 4/31 (12%), Positives = 10/31 (32%)
Query: 26 LEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56
L R ++ G++ G + +
Sbjct: 192 LNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 28.7 bits (64), Expect = 0.071
Identities = 10/53 (18%), Positives = 21/53 (39%)
Query: 1 MRIDRCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL 53
R N + ++ L ++ + +C +AV+ NG L +V +
Sbjct: 176 TRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 28.8 bits (64), Expect = 0.075
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 24 SSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56
L E L +AVM+NGR+ G ++ L +
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 28.9 bits (64), Expect = 0.078
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 25 SLEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56
+ A+ R+ V+V G+L +G + L +
Sbjct: 200 DPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 28.4 bits (63), Expect = 0.11
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 26 LEECEALCTRLAVMVNGRLSCLGSVQHL 53
L+ L VM NG++ G +
Sbjct: 210 LDIVLNYIDHLYVMFNGQIIAEGRGEEE 237
>d1zv9a1 b.2.2.2 (A:3-173) Cellulosomal scaffoldin adaptor protein
B, ScaB {Acetivibrio cellulolyticus [TaxId: 35830]}
Length = 171
Score = 26.3 bits (58), Expect = 0.59
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 55 NKFAVGYQLQIKFPPTTQQ 73
F+ G QL +K+ P Q
Sbjct: 30 TNFS-GCQLNMKYDPAVLQ 47
>d1tyja1 b.2.2.2 (A:2-171) Cellulosomal scaffoldin ScaA
{Bacteroides cellulosolvens [TaxId: 35825]}
Length = 170
Score = 25.9 bits (57), Expect = 0.60
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 55 NKFAVGYQLQIKFPPTTQQ 73
F+ GYQ IK+ T Q
Sbjct: 28 TNFS-GYQFNIKYNTTYLQ 45
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 25.3 bits (55), Expect = 1.2
Identities = 3/26 (11%), Positives = 10/26 (38%)
Query: 31 ALCTRLAVMVNGRLSCLGSVQHLKNK 56
++ ++ G G+ L++
Sbjct: 222 RKADKILILHQGSSYFYGTFSELQSL 247
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A,
SdbA {Clostridium thermocellum [TaxId: 1515]}
Length = 162
Score = 25.2 bits (55), Expect = 1.4
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 55 NKFAVGYQLQIKFPPTTQQNI 75
FA G+Q+ I + P +
Sbjct: 30 KNFA-GFQVNIVYDPKVLMAV 49
>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId:
294]}
Length = 404
Score = 25.1 bits (53), Expect = 1.6
Identities = 5/37 (13%), Positives = 12/37 (32%)
Query: 8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL 44
R+ F Y++ E L +++ +
Sbjct: 366 DYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDRKT 402
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 24.5 bits (53), Expect = 2.8
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 31 ALCTRLAVMVNGRLSCLGSVQHL----KNKFAVGYQLQ 64
R+ VM G++ G + L ++ ++ YQLQ
Sbjct: 202 KNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 23.6 bits (51), Expect = 5.5
Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 31 ALCTRLAVMVNGRLSCLGSVQHLKNK---FAVGYQLQ 64
+ V+ +G + G+ L + +A +++Q
Sbjct: 215 EQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 251
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase
(Pantoate-beta-alanine ligase, PanC) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 286
Score = 23.6 bits (50), Expect = 5.7
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 67 FPPTTQQNIKWFVAAYLKGNTR 88
P + + VAA L G TR
Sbjct: 256 GPMPLNGSGRLLVAARL-GTTR 276
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 23.4 bits (49), Expect = 6.3
Identities = 4/50 (8%), Positives = 10/50 (20%)
Query: 1 MRIDRCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSV 50
R+ + + + L + + L L
Sbjct: 114 FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE 163
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 22.9 bits (49), Expect = 9.4
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 31 ALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQL 63
+ + G + G+ Q L K + +
Sbjct: 216 EQADHILFLEGGAIREGGTHQQLMEKKGCYWAM 248
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.135 0.425
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 350,783
Number of extensions: 12681
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 25
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)