BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18241
(566 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 97/182 (53%), Gaps = 1/182 (0%)
Query: 380 ALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYI 439
+ + + G P+ C C KSF++ L +H HTG ++C CGK F +K
Sbjct: 8 SSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTR 67
Query: 440 HKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQ 499
H+ H+GEKP KC CG + ++L+ H R HTGEKPY C CGK + ++ L AH +
Sbjct: 68 HQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQ-LAHLRAHQR 126
Query: 500 THSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNG 559
TH+ +P+ C CG+ + + L H H+G P+ C C KSF+++ L H H G
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Query: 560 TK 561
K
Sbjct: 187 KK 188
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 91/168 (54%), Gaps = 1/168 (0%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQ 423
+P+ C CG+ + L H H G P+ C C KSF+ K L +H HTG ++
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 424 CDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTC 483
C CGK F + + H+ H+GEKP C CG + +HL+ H R HTGEKPY+C C
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Query: 484 GKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSG 531
GK R + L+ H +TH+ +P+ C CG+ + + AL VH H+G
Sbjct: 140 GKSFSREDN-LHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 87/159 (54%)
Query: 7 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFC 66
CP CGK + L H +TH+ +P+ C CG+ + KK L H H+G P+ C C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 67 NKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLAL 126
KSF+Q+ L H H G K Y C CGK F + HQ H+GE+ KC CG +
Sbjct: 84 GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSF 143
Query: 127 TTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 165
+ + +L+ H HTG++P++C CGK F+++ VH++
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 93/209 (44%), Gaps = 31/209 (14%)
Query: 294 ALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSEL 353
+ + + G P+ C C KSF++ L +H HTG
Sbjct: 8 SSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGE-------------------- 47
Query: 354 NAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHL 413
+P+ C CG+ + KK L H H G P+ C C KSF+Q+ L+ H
Sbjct: 48 ----------KPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ 97
Query: 414 PIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHT 473
HTG + C CGK F H+ H+GEKP KC CG + +L H R HT
Sbjct: 98 RTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHT 157
Query: 474 GEKPYQCTTCGKRLRRTVSELNAHIQTHS 502
GEKPY+C CGK R + LN H +TH+
Sbjct: 158 GEKPYKCPECGKSFSRRDA-LNVHQRTHT 185
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 86/199 (43%), Gaps = 30/199 (15%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQ 337
+P+ C CG+ + L H H G P+ C C KSF+ K L +H HTG
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE---- 75
Query: 338 WEQSHLNYVWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCS 397
+P+ C CG+ + + L H H G P+ C
Sbjct: 76 --------------------------KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109
Query: 398 FCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGL 457
C KSF+Q L+ H HTG ++C CGK F + + + H+ H+GEKP KC CG
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK 169
Query: 458 AVLSSSHLKRHFRVHTGEK 476
+ L H R HTG+K
Sbjct: 170 SFSRRDALNVHQRTHTGKK 188
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 88/195 (45%), Gaps = 30/195 (15%)
Query: 254 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFC 313
CP CGK + L H +TH+ +P+ C CG+ + KK L H H G P+ C C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 314 NKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDLRPFVCEICGQ 373
KSF+Q+ L+ AH +TH+ +P+ C CG+
Sbjct: 84 GKSFSQRANLR------------------------------AHQRTHTGEKPYACPECGK 113
Query: 374 GYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIH 433
+ L H H G P+ C C KSF+++ L H HTG ++C CGK F
Sbjct: 114 SFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSR 173
Query: 434 QKSFYIHKMVHSGEK 448
+ + +H+ H+G+K
Sbjct: 174 RDALNVHQRTHTGKK 188
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
Query: 415 IHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTG 474
+ G + C CGK F H+ H+GEKP KC CG + L RH R HTG
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
EKPY+C CGK + + L AH +TH+ +P+ C CG+ + L H H+G P
Sbjct: 75 EKPYKCPECGKSFSQRAN-LRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP 133
Query: 535 FTCHFCNKSFTQKIGLVKHLNIHNGTKKYQ 564
+ C C KSF+++ L H H G K Y+
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYK 163
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 73/135 (54%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQ 90
+P+ C CG+ + L H H+G P+ C C KSF+ K L +H H G K Y+
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 91 CHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVC 150
C CGK F + + HQ H+GE+ C CG + + +HL H HTG++P++C C
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Query: 151 GKRFAKKWNAQVHKK 165
GK F+++ N H++
Sbjct: 140 GKSFSREDNLHTHQR 154
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 72/139 (51%)
Query: 5 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCH 64
++CP CGK + +L H +TH+ +P+ C CG+ + + L H H+G P+ C
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109
Query: 65 FCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGL 124
C KSF+Q L H H G K Y+C CGK F + HQ H+GE+ KC CG
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK 169
Query: 125 ALTTKSHLNRHMLVHTGDR 143
+ + + LN H HTG +
Sbjct: 170 SFSRRDALNVHQRTHTGKK 188
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 63/119 (52%)
Query: 47 ALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKF 106
+ + + G P+ C C KSF++ L +H H G K Y+C CGK F
Sbjct: 8 SSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTR 67
Query: 107 HQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 165
HQ H+GE+ KC CG + + +++L H HTG++P+ C CGK F++ + + H++
Sbjct: 68 HQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 521 ALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQ 564
+ + + G P+ C C KSF++ L +H H G K Y+
Sbjct: 8 SSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYK 51
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 45/84 (53%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKC 452
P+ C C KSF+Q LQKH HTG ++C CGK F H+ H+GEKP KC
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 453 SACGLAVLSSSHLKRHFRVHTGEK 476
CG + S HL RH R H +K
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNKK 87
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCT 481
++C CGK F + H+ H+GEKP KC CG + SS L++H R HTGEKPY+C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 482 TCGKRLRRTVSELNAHIQTHSDLR 505
CGK R+ L+ H +TH + +
Sbjct: 65 ECGKSFSRS-DHLSRHQRTHQNKK 87
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 44/84 (52%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 119
P+ C C KSF+Q L KH H G K Y+C CGK F + + HQ H+GE+ KC
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 120 DICGLALTTKSHLNRHMLVHTGDR 143
CG + + HL+RH H +
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNKK 87
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
EKP KC CG + SS+L++H R HTGEKPY+C CGK ++ S+L H +TH+ +P
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQS-SDLQKHQRTHTGEKP 60
Query: 507 FVCEICGQGYKMKKALLVHVGMH 529
+ C CG+ + L H H
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTH 83
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHE 146
K Y+C CGK F ++ + HQ H+GE+ KC CG + + S L +H HTG++P++
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 147 CSVCGKRFAKKWNAQVHKK 165
C CGK F++ + H++
Sbjct: 63 CPECGKSFSRSDHLSRHQR 81
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQ 423
+P+ C CG+ + L H H G P+ C C KSF+Q LQKH HTG ++
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 424 CDLCGKRFIHQKSFYIHKMVHSGEK 448
C CGK F H+ H +K
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
EKPY+C CGK ++ S L H +TH+ +P+ C CG+ + L H H+G P
Sbjct: 2 EKPYKCPECGKSFSQS-SNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 535 FTCHFCNKSFTQKIGLVKHLNIHNGTK 561
+ C C KSF++ L +H H K
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQ 90
+P+ C CG+ + L H H+G P+ C C KSF+Q L KH H G K Y+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 91 CHLCGKGFIHHTSYKFHQLVHSGER 115
C CGK F HQ H ++
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 1 MPLIHECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
M ++CP CGK + S L H +TH+ +P+ C CG+ + L H H+G P
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 61 FTCHFCNKSFTQKIGLVKHLNIHNGTK 87
+ C C KSF++ L +H H K
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 248 MPLIHECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINP 307
M ++CP CGK + S L H +TH+ +P+ C CG+ + L H H G P
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 308 FTCSFCNKSFTQKVGLQKHLPIH 330
+ C C KSF++ L +H H
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTH 83
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 41/110 (37%), Gaps = 30/110 (27%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDLRPF 366
P+ C C KSF+Q LQKH HTG +P+
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGE------------------------------KPY 33
Query: 367 VCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIH 416
C CG+ + L H H G P+ C C KSF++ L +H H
Sbjct: 34 KCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQ 337
+P+ C CG+ + L H H G P+ C C KSF+Q LQKH HTG ++
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 338 WEQSHLNYVWRTVSELNAHIQTHSDLR 364
+ + L+ H +TH + +
Sbjct: 63 CPE--CGKSFSRSDHLSRHQRTHQNKK 87
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQ 564
+P+ C CG+ + L H H+G P+ C C KSF+Q L KH H G K Y+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 165
E+ KC CG + + S+L +H HTG++P++C CGK F++ + Q H++
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR 53
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 7/119 (5%)
Query: 445 SGEKPIKCS--ACGLAVLSSSHLKRHFRVHTGEKPYQCT--TCGKRLRRTVSELNAHIQT 500
S ++P C+ C SHL+ H R HTGEKPYQC C +R R+ +L H +
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRS-DQLKRHQRR 60
Query: 501 HSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHF--CNKSFTQKIGLVKHLNIH 557
H+ ++PF C+ C + + L H H+G PF+C + C K F + LV+H N+H
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 392 NPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQCDL--CGKRFIHQKSFYIHKMVHSGE 447
PF C++ CNK + + LQ H HTG +QCD C +RF H+ H+G
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 448 KPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCT--TCGKRLRRTVSELNAHIQTH 501
KP +C C S HLK H R HTGEKP+ C +C K+ R+ EL H H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARS-DELVRHHNMH 119
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 306 NPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDL 363
PF C++ CNK + + LQ H HTG +Q + + +L H + H+ +
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSF--CNKSFTQKVGLQKHLPIH 416
+PF C+ C + + L H H G PF+C + C K F + L +H +H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 56 SGIHPFTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVH 111
S PF C + CNK + + L H H G K YQC C + F K HQ H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 112 SGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS--VCGKRFAK 156
+G + +C C + HL H HTG++P C C K+FA+
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFAR 108
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 28 SDLRPFVCEI--CGQGYKMKKALLVHVGMHSGIHPFTCHF--CNKSFTQKIGLVKHLNIH 83
S+ RPF+C C + Y L +H H+G P+ C F C + F++ L +H H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 84 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCD--ICGLALTTKSHLNRHMLVH 139
G K +QC C + F K H H+GE+ C C L RH +H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 2 PLIHECPTCGKKWRTVSELNAHIQTHSDLRPFVCEI--CGQGYKMKKALLVHVGMHSGIH 59
P + P C K++ +S L H + H+ +P+ C+ C + + L H H+G+
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFI 99
PF C C + F++ L H H G K + C C K F
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 249 PLIHECPTCGKKWRTVSELNAHIQTHSDLRPFVCEI--CGQGYKMKKALLVHVGMHNGIN 306
P + P C K++ +S L H + H+ +P+ C+ C + + L H H G+
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTGSTRF 336
PF C C + F++ L+ H HTG F
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPF 95
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 344 NYVWRTVSELNAHIQTHSDLRPFVCEI--CGQGYKMKKALLVHVGMHNGINPFTCSFCNK 401
N + +S L H + H+ +P+ C+ C + + L H H G+ PF C C +
Sbjct: 15 NKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQR 74
Query: 402 SFTQKVGLQKHLPIHTGSTRFQCDL--CGKRFIHQKSFYIHKMVH 444
F++ L+ H HTG F C C K+F H +H
Sbjct: 75 KFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 10 CGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHF--CN 67
C +++ +L H + H+ ++PF C+ C + + L H H+G PF+C + C
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQ 103
Query: 68 KSFTQKIGLVKHLNIH 83
K F + LV+H N+H
Sbjct: 104 KKFARSDELVRHHNMH 119
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 473 TGEKPYQCTT--CGKRLRRTVSELNAHIQTHSDLRPFVCEI--CGQGYKMKKALLVHVGM 528
+ ++P+ C C KR + +S L H + H+ +P+ C+ C + + L H
Sbjct: 2 SEKRPFMCAYPGCNKRYFK-LSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 529 HSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKY 563
H+G+ PF C C + F++ L H H G K +
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPF 95
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 257 CGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSF--CN 314
C +++ +L H + H+ ++PF C+ C + + L H H G PF+C + C
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQ 103
Query: 315 KSFTQKVGLQKHLPIH 330
K F + L +H +H
Sbjct: 104 KKFARSDELVRHHNMH 119
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 94 CGKGFIHHTSYKFHQLVHSGERNVKCDI--CGLALTTKSHLNRHMLVHTGDRPHECSVCG 151
C K + + + H H+GE+ +CD C + L RH HTG +P +C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 152 KRFAKKWNAQVH 163
++F++ + + H
Sbjct: 74 RKFSRSDHLKTH 85
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 502 SDLRPFVCEI--CGQGYKMKKALLVHVGMHSGIHPFTCHF--CNKSFTQKIGLVKHLNIH 557
S+ RPF+C C + Y L +H H+G P+ C F C + F++ L +H H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 558 NGTKKYQ 564
G K +Q
Sbjct: 62 TGVKPFQ 68
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 6 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCE--ICGQGYKMKKALLVHVGMH 55
+C TC +K+ L H +TH+ +PF C C + + L+ H MH
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 44/81 (54%)
Query: 394 FTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCS 453
F C C KSF + L HL IH+ + + C CGKRF + H +H+GEKP KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 454 ACGLAVLSSSHLKRHFRVHTG 474
CG A SS+L H R HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 89 YQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 148
+ C +CGK F ++ H L+HS R C CG KS + +H +HTG++PH+C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 149 VCGKRFAKKWNAQVHKKK 166
VCGK F++ N H +K
Sbjct: 62 VCGKAFSQSSNLITHSRK 79
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 6 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHF 65
+C CGK ++ S L+ H+ HSD RP+ C+ CG+ + K + H +H+G P C
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 66 CNKSFTQKIGLVKHLNIHNG 85
C K+F+Q L+ H H G
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 366 FVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCD 425
F C+ICG+ +K L H+ +H+ P+ C +C K F QK ++KH IHTG +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 426 LCGKRFIHQKSFYIHKMVHSG 446
+CGK F + H H+G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 33 FVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCH 92
F C+ICG+ +K L H+ +HS P+ C +C K F QK + KH IH G K ++C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 93 LCGKGFIHHTSYKFHQLVHSG 113
+CGK F ++ H H+G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 44/81 (54%)
Query: 61 FTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCD 120
F C C KSF + L HL IH+ T+ Y C CGK F + K H +H+GE+ KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 121 ICGLALTTKSHLNRHMLVHTG 141
+CG A + S+L H HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 253 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSF 312
+C CGK ++ S L+ H+ HSD RP+ C+ CG+ + K + H +H G P C
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 313 CNKSFTQKVGLQKHLPIHTG 332
C K+F+Q L H HTG
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 478 YQCTTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTC 537
+ C CGK +R+ S L+ H+ HSD RP+ C+ CG+ + K + H +H+G P C
Sbjct: 2 FDCKICGKSFKRS-STLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 538 HFCNKSFTQKIGLVKHLNIHNG 559
C K+F+Q L+ H H G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCT 481
F C +CGK F + H ++HS +P C CG S +K+H +HTGEKP++C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 482 TCGKRLRRTVSELNAHIQTHS 502
CGK ++ S L H + H+
Sbjct: 62 VCGKAFSQS-SNLITHSRKHT 81
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 30/111 (27%)
Query: 280 FVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQWE 339
F C+ICG+ +K L H+ +H+ P+ C +C K F QK ++KH IHTG
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE------ 55
Query: 340 QSHLNYVWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNG 390
+P C++CG+ + L+ H H G
Sbjct: 56 ------------------------KPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 347 WRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQK 406
++ S L+ H+ HSD RP+ C+ CG+ + K + H +H G P C C K+F+Q
Sbjct: 11 FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQS 70
Query: 407 VGLQKHLPIHTG 418
L H HTG
Sbjct: 71 SNLITHSRKHTG 82
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 507 FVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQ 564
F C+ICG+ +K L H+ +HS P+ C +C K F QK + KH IH G K ++
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 445 SGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQT--HS 502
SG ++C C LS +LK H R HTGEKP++C CGK R + L + +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 503 DLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHL-NIHNG 559
+ F C +C + ++ + L +H+ H+G P+ C C++ F QK L H+ +H+G
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 6 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVG---MHSGIHPFT 62
ECPTC KK+ + L H + H+ +PF C CG+ Y K+ LL H M+ FT
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 63 CHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQL-VHSG 113
C C ++F +++ L H+ H G Y+C C + F+ + H + +HSG
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 417 TGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFR---VHT 473
+GS+ +C C K+F+ + +H H+GEKP +C CG +L H ++
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 474 GEKPYQCTTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVH-VGMHSG 531
E+ + C+ C + RR + EL H+ +H+ P+ C C Q + KK L H + +HSG
Sbjct: 63 SEQVFTCSVCQETFRRRM-ELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 56 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQL---VHS 112
SG C C+K F K L H H G K ++C CGK + + H+ ++
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 113 GERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDV 172
E+ C +C + L HM+ HTG+ P++CS C ++F +K + Q H K+H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Query: 173 PG 174
G
Sbjct: 123 SG 124
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 353 LNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVG---MHNGINPFTCSFCNKSFTQKVGL 409
L H + H+ +PF C CG+ Y K+ LL H M+ FTCS C ++F +++ L
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL 82
Query: 410 QKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKM-VHSG 446
+ H+ HTG ++C C ++F+ +K H + +HSG
Sbjct: 83 RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 34/142 (23%)
Query: 253 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVG---MHNGINPFT 309
ECPTC KK+ + L H + H+ +PF C CG+ Y K+ LL H M+ FT
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 310 CSFCNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDLRPFVCE 369
CS C ++F +++ L+ H+ HTG P+ C
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEM------------------------------PYKCS 98
Query: 370 ICGQGYKMKKALLVH-VGMHNG 390
C Q + KK L H + +H+G
Sbjct: 99 SCSQQFMQKKDLQSHMIKLHSG 120
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 389 NGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKM---VHS 445
+G + C C+K F K L+ H HTG F+C CGK + +++ H+ ++
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 446 GEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHS 502
E+ CS C L+ H HTGE PY+C++C ++ + + I+ HS
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 303 NGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWR-TVSELNAHIQTHS 361
+G + C C+K F K L+ H HTG F+ + Y + + E A +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 362 DLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHL-PIHTGST 420
+ F C +C + ++ + L +H+ H G P+ CS C++ F QK LQ H+ +H+G +
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 66 CNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDI--CG 123
C K F + KHL+ H G + + C CGK F+ + K HQLVH+GE+ +C CG
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 124 LALTTKSHLNRHMLVHTGDRPHECSV--CGKRFAKKWNAQVH 163
+ +L H+ +HTGDRP+ C C K+FA+ N + H
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 399 CNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCS--ACG 456
C K F ++KHL H G C CGK F+ H++VH+GEKP +C+ CG
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 457 LAVLSSSHLKRHFRVHTGEKPYQC--TTCGKRLRRTVSELNAHIQTHSDLR 505
+L+ H R+HTG++PY C C K+ ++ + L +HI TH+ +
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTN-LKSHILTHAKAK 121
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 427 CGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKR 486
C K F + H H G + C+ CG A + SS LKRH VHTGEKP+QCT
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF---- 67
Query: 487 LRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHF--CNKSF 544
E CG+ + + L HV +H+G P+ C F CNK F
Sbjct: 68 -----------------------EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKF 104
Query: 545 TQKIGLVKHLNIHNGTKKYQ 564
Q L H+ H K Q
Sbjct: 105 AQSTNLKSHILTHAKAKNNQ 124
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 2 PLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIH 59
P CP C K +R S + H+ TH R VC CG+ + L H +H+G
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 60 PFTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVHSGER 115
PF C F C K F+ L H+ IH G + Y C C K F T+ K H L H+ +
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Query: 116 N 116
N
Sbjct: 122 N 122
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 249 PLIHECPTCGKKWRTVSELNAHIQTHSDLRPFVC--EICGQGYKMKKALLVHVGMHNGIN 306
P +H C CGK + S+L H H+ +PF C E CG+ + + L HV +H G
Sbjct: 32 PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 91
Query: 307 PFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQ 337
P+ C F CNK F Q L+ H+ H + Q
Sbjct: 92 PYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 2 PLIHECPTCGKKWRTVSELNAHIQTHSDLRPFVC--EICGQGYKMKKALLVHVGMHSGIH 59
P +H C CGK + S+L H H+ +PF C E CG+ + + L HV +H+G
Sbjct: 32 PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 91
Query: 60 PFTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQ 90
P+ C F CNK F Q L H+ H K Q
Sbjct: 92 PYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 346 VWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSF--CNKSF 403
++R S + H+ TH R VC CG+ + L H +H G PF C+F C K F
Sbjct: 16 MFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRF 74
Query: 404 TQKVGLQKHLPIHTGSTRFQC--DLCGKRFIHQKSFYIHKMVHSGEK 448
+ L+ H+ IHTG + C D C K+F + H + H+ K
Sbjct: 75 SLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 249 PLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGIN 306
P CP C K +R S + H+ TH R VC CG+ + L H +H G
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 307 PFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDLR 364
PF C+F C K F+ L+ H+ IHTG + N + + L +HI TH+ +
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 371 CGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDL--CG 428
C + ++ A+ H+ H G C+ C K+F + L++H +HTG FQC CG
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 429 KRFIHQKSFYIHKMVHSGEKPIKC--SACGLAVLSSSHLKRHFRVHTGEKPYQ 479
KRF + H +H+G++P C C S++LK H H K Q
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 94 CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSV--CG 151
C K F +++ + H H G R C CG A S L RH LVHTG++P +C+ CG
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 152 KRFAKKWNAQVHKKKVHGLDVP 173
KRF+ +N + H ++H D P
Sbjct: 72 KRFSLDFNLRTH-VRIHTGDRP 92
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 38 CGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHL--CG 95
C + ++ A+ H+ H G C C K+F + L +H +H G K +QC CG
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 96 KGFIHHTSYKFHQLVHSGERNVKC--DICGLALTTKSHLNRHMLVHT 140
K F + + H +H+G+R C D C ++L H+L H
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 449 PIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHSDLRPFV 508
P KC CG LK H R HTG KPY+C TC + S LN H++ HSD RPF
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADS-SSLNKHLRIHSDERPFK 66
Query: 509 CEICGQGYKMKKALLVHVGMHSG 531
C+IC + L VH+ H+G
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTG 89
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 423 QCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTT 482
+C++CGK F + H H+G KP KC C A SS L +H R+H+ E+P++C
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 483 CGKRLRRTVSELNAHIQTHS 502
C R S+L H+++H+
Sbjct: 70 C-PYASRNSSQLTVHLRSHT 88
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 39/83 (46%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKC 119
P C C K F++K L H+ H G K Y+C C +S H +HS ER KC
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 120 DICGLALTTKSHLNRHMLVHTGD 142
IC A S L H+ HTGD
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGD 90
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 42/90 (46%)
Query: 386 GMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHS 445
G P C C K F++K L+ H+ HTG ++C C S H +HS
Sbjct: 1 GSSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 446 GEKPIKCSACGLAVLSSSHLKRHFRVHTGE 475
E+P KC C A +SS L H R HTG+
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 300 GMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQT 359
G P C C K F++K L+ H+ HTG ++ + +Y S LN H++
Sbjct: 1 GSSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKT--CDYAAADSSSLNKHLRI 58
Query: 360 HSDLRPFVCEICGQGYKMKKALLVHVGMHNG 390
HSD RPF C+IC + L VH+ H G
Sbjct: 59 HSDERPFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 279 PFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQW 338
P CE+CG+ + K L H+ H G+ P+ C C+ + L KHL IH+ F+
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 339 EQSHLNYVWRTVSELNAHIQTHS 361
+ Y R S+L H+++H+
Sbjct: 68 QI--CPYASRNSSQLTVHLRSHT 88
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 89 YQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECS 148
++C +CGK F K H H+G + KC C A S LN+H+ +H+ +RP +C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 149 VCGKRFAKKWNAQV 162
+C +A + ++Q+
Sbjct: 69 IC--PYASRNSSQL 80
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%)
Query: 5 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCH 64
H+C CGK + +L H++ H+ ++P+ C+ C +L H+ +HS PF C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 65 FCNKSFTQKIGLVKHLNIHNG 85
C + L HL H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 252 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCS 311
H+C CGK + +L H++ H+ ++P+ C+ C +L H+ +H+ PF C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 312 FCNKSFTQKVGLQKHLPIHTGST 334
C + L HL HTG +
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGDS 91
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 477 PYQCTTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFT 536
P++C CGK R +L H++ H+ ++P+ C+ C +L H+ +HS PF
Sbjct: 8 PHKCEVCGKCFSRK-DKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 537 CHFCNKSFTQKIGLVKHLNIHNG 559
C C + L HL H G
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTG 89
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 506 PFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQ 564
P CE+CG+ + K L H+ H+G+ P+ C C+ + L KHL IH+ + ++
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 352 ELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQK 411
+L H++ H+ ++P+ C+ C +L H+ +H+ PF C C + L
Sbjct: 23 KLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV 82
Query: 412 HLPIHTGST 420
HL HTG +
Sbjct: 83 HLRSHTGDS 91
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 364 RPFVC--EICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTR 421
RP+ C E C + + K L H+ +H G PF C C ++F+Q GL +H+ HTG
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEK 448
F CD+CG++F + H +H +K
Sbjct: 63 FACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 60 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 117
P+ C C++ F+QK L H+ IH G K +QC +C + F HT H H+GE+
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Query: 118 KCDICGLALTTKSHLNRHMLVH 139
CDICG T +RH +H
Sbjct: 64 ACDICGRKFATLHTRDRHTKIH 85
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 31 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 88
RP+ C E C + + K L H+ +H+G PF C C ++F+Q GL +H+ H G K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 89 YQCHLCGKGFIHHTSYKFHQLVHSGERN 116
+ C +CG+ F + H +H +++
Sbjct: 63 FACDICGRKFATLHTRDRHTKIHLRQKD 90
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 393 PFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPI 450
P+ C C++ F+QK L H+ IHTG FQC +C + F H H+GEKP
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Query: 451 KCSACGLAVLSSSHLKRHFRVHTGEK 476
C CG + RH ++H +K
Sbjct: 64 ACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 447 EKPIKC--SACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHSDL 504
E+P C +C ++L H R+HTG+KP+QC C + + LN HI+TH+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTG-LNQHIRTHTGE 60
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIH 533
+PF C+ICG+ + A L H+ IH
Sbjct: 61 KPFACDICGRKF----ATLHTRDRHTKIH 85
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 307 PFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDLR 364
P+ C C++ F+QK L H+ IHTG FQ N+ T LN HI+TH+ +
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHT--GLNQHIRTHTGEK 61
Query: 365 PFVCEICGQGYKMKKALLVHVGMH 388
PF C+ICG+ + H +H
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIH 85
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 248 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGI 305
M + CP +C +++ + L+ HI+ H+ +PF C IC + + L H+ H G
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 306 NPFTCSFCNKSFTQKVGLQKHLPIH 330
PF C C + F +H IH
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIH 85
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 427 CGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKR 486
C +RF + + H +H+G+KP +C C + L +H R HTGEKP+ C CG++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 487 LRRTVSELNAHIQTH 501
T+ + H + H
Sbjct: 72 F-ATLHTRDRHTKIH 85
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 475 EKPYQC--TTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 532
E+PY C +C +R + + L+ HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 2 ERPYACPVESCDRRFSQKTN-LDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 533 HPFTCHFCNKSFTQKIGLVKHLNIH 557
PF C C + F +H IH
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIH 85
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 1 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 58
M + CP +C +++ + L+ HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 59 HPFTCHFCNKSFTQKIGLVKHLNIH 83
PF C C + F +H IH
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIH 85
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 94 CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKR 153
C + F T+ H +H+G++ +C IC + + LN+H+ HTG++P C +CG++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 154 FAKKWNAQVHKK 165
FA H K
Sbjct: 72 FATLHTRDRHTK 83
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 505 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 562
RP+ C E C + + K L H+ +H+G PF C C ++F+Q GL +H+ H G K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 563 Y 563
+
Sbjct: 63 F 63
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 351 SELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQ 410
+ L+ HI+ H+ +PF C IC + + L H+ H G PF C C + F
Sbjct: 20 TNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRD 79
Query: 411 KHLPIH 416
+H IH
Sbjct: 80 RHTKIH 85
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 534 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQ 564
P+ C C++ F+QK L H+ IH G K +Q
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQ 36
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 447 EKPIKC--SACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHSDL 504
E+P C +C SS+L RH R+HTG+KP+QC C + R+ L HI+TH+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRS-DHLTTHIRTHTGE 60
Query: 505 RPFVCEICGQGYKMKKALLVHVGMH 529
+PF C+ICG+ + H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 393 PFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPI 450
P+ C C++ F+ L +H+ IHTG FQC +C + F H H+GEKP
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 451 KCSACGLAVLSSSHLKRHFRVHTGEK 476
C CG S KRH ++H +K
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 364 RPFVC--EICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTR 421
RP+ C E C + + L H+ +H G PF C C ++F++ L H+ HTG
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEK 448
F CD+CG++F H +H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 31 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 88
RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 89 YQCHLCGKGFIHHTSYKFHQLVHSGERN 116
+ C +CG+ F K H +H +++
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 427 CGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKR 486
C +RF + H +H+G+KP +C C S HL H R HTGEKP+ C CG++
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 487 LRRTVSELNAHIQTH 501
R+ E H + H
Sbjct: 72 FARS-DERKRHTKIH 85
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 248 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGI 305
M + CP +C +++ S L HI+ H+ +PF C IC + + L H+ H G
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 306 NPFTCSFCNKSFTQKVGLQKHLPIH 330
PF C C + F + ++H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 60 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 117
P+ C C++ F+ L +H+ IH G K +QC +C + F H H+GE+
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 118 KCDICGLALTTKSHLNRHMLVH 139
CDICG RH +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 475 EKPYQC--TTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 532
E+PY C +C +R + S L HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 2 ERPYACPVESCDRRFSDS-SNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 533 HPFTCHFCNKSFTQKIGLVKHLNIH 557
PF C C + F + +H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 1 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 58
M + CP +C +++ S L HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 59 HPFTCHFCNKSFTQKIGLVKHLNIH 83
PF C C + F + +H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 87 KKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
+ Y C + C + F ++ H +H+G++ +C IC + HL H+ HTG++P
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 145 HECSVCGKRFAKKWNAQVHKK 165
C +CG++FA+ + H K
Sbjct: 63 FACDICGRKFARSDERKRHTK 83
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 351 SELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQ 410
S L HI+ H+ +PF C IC + + L H+ H G PF C C + F + +
Sbjct: 20 SNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 411 KHLPIH 416
+H IH
Sbjct: 80 RHTKIH 85
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 307 PFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDLR 364
P+ C C++ F+ L +H+ IHTG FQ N+ L HI+TH+ +
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSR--SDHLTTHIRTHTGEK 61
Query: 365 PFVCEICGQGYKMKKALLVHVGMH 388
PF C+ICG+ + H +H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 505 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 562
RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 563 Y 563
+
Sbjct: 63 F 63
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 534 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQ 564
P+ C C++ F+ L +H+ IH G K +Q
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQ 36
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 364 RPFVC--EICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTR 421
RP+ C E C + + K L H+ +H G PF C C ++F+Q+ L H+ HTG
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEK 448
F CD+CG++F + H +H +K
Sbjct: 63 FACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 393 PFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPI 450
P+ C C++ F+QK L H+ IHTG FQC +C + F Q S H H+GEKP
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 451 KCSACGLAVLSSSHLKRHFRVHTGEK 476
C CG + RH ++H +K
Sbjct: 64 ACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 447 EKPIKC--SACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHSDL 504
E+P C +C ++L H R+HTG+KP+QC C + + S LNAHI+TH+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQAS-LNAHIRTHTGE 60
Query: 505 RPFVCEICGQGYKMKKALLVHVGMH 529
+PF C+ICG+ + H +H
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIH 85
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 60 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 117
P+ C C++ F+QK L H+ IH G K +QC +C + F S H H+GE+
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 118 KCDICGLALTTKSHLNRHMLVH 139
CDICG T RH +H
Sbjct: 64 ACDICGRKFATLHTRTRHTKIH 85
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 31 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 88
RP+ C E C + + K L H+ +H+G PF C C ++F+Q+ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 89 YQCHLCGKGFIHHTSYKFHQLVHSGERN 116
+ C +CG+ F + H +H +++
Sbjct: 63 FACDICGRKFATLHTRTRHTKIHLRQKD 90
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 307 PFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDLR 364
P+ C C++ F+QK L H+ IHTG FQ N+ + + LNAHI+TH+ +
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQ--ASLNAHIRTHTGEK 61
Query: 365 PFVCEICGQGYKMKKALLVHVGMH 388
PF C+ICG+ + H +H
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIH 85
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 475 EKPYQC--TTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 532
E+PY C +C +R + + L+ HI+ H+ +PF C IC + + + +L H+ H+G
Sbjct: 2 ERPYACPVESCDRRFSQKTN-LDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 533 HPFTCHFCNKSFTQKIGLVKHLNIH 557
PF C C + F +H IH
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIH 85
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 1 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 58
M + CP +C +++ + L+ HI+ H+ +PF C IC + + + +L H+ H+G
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 59 HPFTCHFCNKSFTQKIGLVKHLNIH 83
PF C C + F +H IH
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIH 85
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 248 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGI 305
M + CP +C +++ + L+ HI+ H+ +PF C IC + + + +L H+ H G
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 306 NPFTCSFCNKSFTQKVGLQKHLPIH 330
PF C C + F +H IH
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIH 85
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 425 DLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCG 484
+ C +RF + + H +H+G+KP +C C + L H R HTGEKP+ C CG
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICG 69
Query: 485 KRL 487
++
Sbjct: 70 RKF 72
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 94 CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKR 153
C + F T+ H +H+G++ +C IC + ++ LN H+ HTG++P C +CG++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 154 FA 155
FA
Sbjct: 72 FA 73
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 505 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 562
RP+ C E C + + K L H+ +H+G PF C C ++F+Q+ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 563 Y 563
+
Sbjct: 63 F 63
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 534 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQ 564
P+ C C++ F+QK L H+ IH G K +Q
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQ 36
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 447 EKPIKC--SACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHSDL 504
E+P C +C S+ L RH R+HTG+KP+QC C + R+ L HI+TH+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRS-DHLTTHIRTHTGE 60
Query: 505 RPFVCEICGQGYKMKKALLVHVGMH 529
+PF C+ICG+ + H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 392 NPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
P+ C C++ F++ L +H+ IHTG FQC +C + F H H+GEKP
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 450 IKCSACGLAVLSSSHLKRHFRVHTGEK 476
C CG S KRH ++H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 475 EKPYQC--TTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 532
E+PY C +C +R R+ +EL HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 2 ERPYACPVESCDRRFSRS-AELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 533 HPFTCHFCNKSFTQKIGLVKHLNIH 557
PF C C + F + +H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 364 RPFVC--EICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTR 421
RP+ C E C + + L H+ +H G PF C C ++F++ L H+ HTG
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEK 448
F CD+CG++F H +H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 31 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 88
RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 89 YQCHLCGKGFIHHTSYKFHQLVHSGERN 116
+ C +CG+ F K H +H +++
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 248 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGI 305
M + CP +C +++ +EL HI+ H+ +PF C IC + + L H+ H G
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 306 NPFTCSFCNKSFTQKVGLQKHLPIH 330
PF C C + F + ++H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 60 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 117
P+ C C++ F++ L +H+ IH G K +QC +C + F H H+GE+
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 118 KCDICGLALTTKSHLNRHMLVH 139
CDICG RH +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 1 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 58
M + CP +C +++ +EL HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 59 HPFTCHFCNKSFTQKIGLVKHLNIH 83
PF C C + F + +H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 427 CGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKR 486
C +RF H +H+G+KP +C C S HL H R HTGEKP+ C CG++
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 487 LRRTVSELNAHIQTH 501
R+ E H + H
Sbjct: 72 FARS-DERKRHTKIH 85
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 351 SELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQ 410
+EL HI+ H+ +PF C IC + + L H+ H G PF C C + F + +
Sbjct: 20 AELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 411 KHLPIH 416
+H IH
Sbjct: 80 RHTKIH 85
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 94 CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKR 153
C + F H +H+G++ +C IC + HL H+ HTG++P C +CG++
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 154 FAKKWNAQVHKK 165
FA+ + H K
Sbjct: 72 FARSDERKRHTK 83
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 306 NPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDL 363
P+ C C++ F++ L +H+ IHTG FQ N+ L HI+TH+
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSR--SDHLTTHIRTHTGE 60
Query: 364 RPFVCEICGQGYKMKKALLVHVGMH 388
+PF C+ICG+ + H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 505 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 562
RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 563 Y 563
+
Sbjct: 63 F 63
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 534 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQ 564
P+ C C++ F++ L +H+ IH G K +Q
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKPFQ 36
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 447 EKPIKC--SACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHSDL 504
E+P C +C S+ L RH R+HTG+KP+QC C + R+ L HI+TH+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRS-DHLTTHIRTHTGE 60
Query: 505 RPFVCEICGQGYKMKKALLVHVGMH 529
+PF C+ICG+ + H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 392 NPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
P+ C C++ F++ L +H+ IHTG FQC +C + F H H+GEKP
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 450 IKCSACGLAVLSSSHLKRHFRVHTGEK 476
C CG S KRH ++H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 364 RPFVC--EICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTR 421
RP+ C E C + + L H+ +H G PF C C ++F++ L H+ HTG
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEK 448
F CD+CG++F H +H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 475 EKPYQC--TTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 532
E+PY C +C +R R+ ++L HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 2 ERPYACPVESCDRRFSRS-ADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 533 HPFTCHFCNKSFTQKIGLVKHLNIH 557
PF C C + F + +H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 31 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 88
RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 89 YQCHLCGKGFIHHTSYKFHQLVHSGERN 116
+ C +CG+ F K H +H +++
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 60 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 117
P+ C C++ F++ L +H+ IH G K +QC +C + F H H+GE+
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 118 KCDICGLALTTKSHLNRHMLVH 139
CDICG RH +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 427 CGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKR 486
C +RF H +H+G+KP +C C S HL H R HTGEKP+ C CG++
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 487 LRRTVSELNAHIQTH 501
R+ E H + H
Sbjct: 72 FARS-DERKRHTKIH 85
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 248 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGI 305
M + CP +C +++ ++L HI+ H+ +PF C IC + + L H+ H G
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 306 NPFTCSFCNKSFTQKVGLQKHLPIH 330
PF C C + F + ++H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 1 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 58
M + CP +C +++ ++L HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 59 HPFTCHFCNKSFTQKIGLVKHLNIH 83
PF C C + F + +H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 351 SELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQ 410
++L HI+ H+ +PF C IC + + L H+ H G PF C C + F + +
Sbjct: 20 ADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 411 KHLPIH 416
+H IH
Sbjct: 80 RHTKIH 85
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 94 CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKR 153
C + F H +H+G++ +C IC + HL H+ HTG++P C +CG++
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 154 FAKKWNAQVHKK 165
FA+ + H K
Sbjct: 72 FARSDERKRHTK 83
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 306 NPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDL 363
P+ C C++ F++ L +H+ IHTG FQ N+ L HI+TH+
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSR--SDHLTTHIRTHTGE 60
Query: 364 RPFVCEICGQGYKMKKALLVHVGMH 388
+PF C+ICG+ + H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 505 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 562
RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 563 Y 563
+
Sbjct: 63 F 63
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 534 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQ 564
P+ C C++ F++ L +H+ IH G K +Q
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKPFQ 36
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 447 EKPIKC--SACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHSDL 504
E+P C +C S L RH R+HTG+KP+QC C + R+ L HI+TH+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRS-DHLTTHIRTHTGE 60
Query: 505 RPFVCEICGQGYKMKKALLVHVGMH 529
+PF C+ICG+ + H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 392 NPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
P+ C C++ F++ L +H+ IHTG FQC +C + F H H+GEKP
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 450 IKCSACGLAVLSSSHLKRHFRVHTGEK 476
C CG S KRH ++H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 364 RPFVC--EICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTR 421
RP+ C E C + + L H+ +H G PF C C ++F++ L H+ HTG
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEK 448
F CD+CG++F H +H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 475 EKPYQC--TTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 532
E+PY C +C +R R+ EL HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 2 ERPYACPVESCDRRFSRS-DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 533 HPFTCHFCNKSFTQKIGLVKHLNIH 557
PF C C + F + +H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 31 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 88
RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 89 YQCHLCGKGFIHHTSYKFHQLVHSGERN 116
+ C +CG+ F K H +H +++
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 248 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGI 305
M + CP +C +++ EL HI+ H+ +PF C IC + + L H+ H G
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 306 NPFTCSFCNKSFTQKVGLQKHLPIH 330
PF C C + F + ++H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 427 CGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKR 486
C +RF H +H+G+KP +C C S HL H R HTGEKP+ C CG++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 487 LRRTVSELNAHIQTH 501
R+ E H + H
Sbjct: 72 FARS-DERKRHTKIH 85
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 1 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 58
M + CP +C +++ EL HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 59 HPFTCHFCNKSFTQKIGLVKHLNIH 83
PF C C + F + +H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 60 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 117
P+ C C++ F++ L +H+ IH G K +QC +C + F H H+GE+
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 118 KCDICGLALTTKSHLNRHMLVH 139
CDICG RH +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 351 SELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQ 410
EL HI+ H+ +PF C IC + + L H+ H G PF C C + F + +
Sbjct: 20 DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 411 KHLPIH 416
+H IH
Sbjct: 80 RHTKIH 85
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 94 CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKR 153
C + F H +H+G++ +C IC + HL H+ HTG++P C +CG++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 154 FAKKWNAQVHKK 165
FA+ + H K
Sbjct: 72 FARSDERKRHTK 83
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 306 NPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDL 363
P+ C C++ F++ L +H+ IHTG FQ N+ L HI+TH+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR--SDHLTTHIRTHTGE 60
Query: 364 RPFVCEICGQGYKMKKALLVHVGMH 388
+PF C+ICG+ + H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 505 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 562
RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 563 Y 563
+
Sbjct: 63 F 63
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 534 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQ 564
P+ C C++ F++ L +H+ IH G K +Q
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ 36
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 392 NPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
P+ C C++ F+Q L +H+ IHTG FQC +C + F H H+GEKP
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 450 IKCSACGLAVLSSSHLKRHFRVHTGEK 476
C CG S KRH ++H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 447 EKPIKC--SACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHSDL 504
E+P C +C S L RH R+HTG+KP+QC C + R+ L HI+TH+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRS-DHLTTHIRTHTGE 60
Query: 505 RPFVCEICGQGYKMKKALLVHVGMH 529
+PF C+ICG+ + H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 364 RPFVC--EICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTR 421
RP+ C E C + + +L H+ +H G PF C C ++F++ L H+ HTG
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEK 448
F CD+CG++F H +H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 31 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 88
RP+ C E C + + +L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 89 YQCHLCGKGFIHHTSYKFHQLVHSGERN 116
+ C +CG+ F K H +H +++
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 425 DLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCG 484
+ C +RF S H +H+G+KP +C C S HL H R HTGEKP+ C CG
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 485 KRLRRTVSELNAHIQTH 501
++ R+ E H + H
Sbjct: 70 RKFARS-DERKRHTKIH 85
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 60 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 117
P+ C C++ F+Q L +H+ IH G K +QC +C + F H H+GE+
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 118 KCDICGLALTTKSHLNRHMLVH 139
CDICG RH +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 475 EKPYQC--TTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 532
E+PY C +C +R ++ S L HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 2 ERPYACPVESCDRRFSQSGS-LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 533 HPFTCHFCNKSFTQKIGLVKHLNIH 557
PF C C + F + +H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 248 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGI 305
M + CP +C +++ L HI+ H+ +PF C IC + + L H+ H G
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 306 NPFTCSFCNKSFTQKVGLQKHLPIH 330
PF C C + F + ++H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 1 MPLIHECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 58
M + CP +C +++ L HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 59 HPFTCHFCNKSFTQKIGLVKHLNIH 83
PF C C + F + +H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 94 CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKR 153
C + F S H +H+G++ +C IC + HL H+ HTG++P C +CG++
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 154 FAKKWNAQVHKK 165
FA+ + H K
Sbjct: 72 FARSDERKRHTK 83
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 306 NPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDL 363
P+ C C++ F+Q L +H+ IHTG FQ N+ L HI+TH+
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSR--SDHLTTHIRTHTGE 60
Query: 364 RPFVCEICGQGYKMKKALLVHVGMH 388
+PF C+ICG+ + H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 353 LNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKH 412
L HI+ H+ +PF C IC + + L H+ H G PF C C + F + ++H
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 413 LPIH 416
IH
Sbjct: 82 TKIH 85
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 505 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 562
RP+ C E C + + +L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 563 Y 563
+
Sbjct: 63 F 63
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 534 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQ 564
P+ C C++ F+Q L +H+ IH G K +Q
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQ 36
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 447 EKPIKC--SACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHSDL 504
E+P C +C S L RH R+HTG+KP+QC C + R+ L HI+TH+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRS-DHLTTHIRTHTGE 59
Query: 505 RPFVCEICGQGYKMKKALLVHVGMH 529
+PF C+ICG+ + H +H
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIH 84
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 392 NPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
P+ C C++ F++ L +H+ IHTG FQC +C + F H H+GEKP
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 450 IKCSACGLAVLSSSHLKRHFRVH 472
C CG S KRH ++H
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 475 EKPYQC--TTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 532
E+PY C +C +R R+ EL HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 1 ERPYACPVESCDRRFSRS-DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 533 HPFTCHFCNKSFTQKIGLVKHLNIH 557
PF C C + F + +H IH
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIH 84
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 364 RPFVC--EICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTR 421
RP+ C E C + + L H+ +H G PF C C ++F++ L H+ HTG
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 422 FQCDLCGKRFIHQKSFYIHKMVH 444
F CD+CG++F H +H
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 31 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 88
RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 89 YQCHLCGKGFIHHTSYKFHQLVH 111
+ C +CG+ F K H +H
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 254 CP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCS 311
CP +C +++ EL HI+ H+ +PF C IC + + L H+ H G PF C
Sbjct: 6 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 65
Query: 312 FCNKSFTQKVGLQKHLPIH 330
C + F + ++H IH
Sbjct: 66 ICGRKFARSDERKRHTKIH 84
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 427 CGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKR 486
C +RF H +H+G+KP +C C S HL H R HTGEKP+ C CG++
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 487 LRRTVSELNAHIQTH 501
R+ E H + H
Sbjct: 71 FARS-DERKRHTKIH 84
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 60 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 117
P+ C C++ F++ L +H+ IH G K +QC +C + F H H+GE+
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 118 KCDICGLALTTKSHLNRHMLVH 139
CDICG RH +H
Sbjct: 63 ACDICGRKFARSDERKRHTKIH 84
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 7 CP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCH 64
CP +C +++ EL HI+ H+ +PF C IC + + L H+ H+G PF C
Sbjct: 6 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 65
Query: 65 FCNKSFTQKIGLVKHLNIH 83
C + F + +H IH
Sbjct: 66 ICGRKFARSDERKRHTKIH 84
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 351 SELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQ 410
EL HI+ H+ +PF C IC + + L H+ H G PF C C + F + +
Sbjct: 19 DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 78
Query: 411 KHLPIH 416
+H IH
Sbjct: 79 RHTKIH 84
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 94 CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKR 153
C + F H +H+G++ +C IC + HL H+ HTG++P C +CG++
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 154 FAKKWNAQVHKK 165
FA+ + H K
Sbjct: 71 FARSDERKRHTK 82
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 306 NPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDL 363
P+ C C++ F++ L +H+ IHTG FQ N+ L HI+TH+
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR--SDHLTTHIRTHTGE 59
Query: 364 RPFVCEICGQGYKMKKALLVHVGMH 388
+PF C+ICG+ + H +H
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIH 84
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 505 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 562
RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 563 Y 563
+
Sbjct: 62 F 62
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 534 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQ 564
P+ C C++ F++ L +H+ IH G K +Q
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ 35
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 447 EKPIKC--SACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHSDL 504
E+P C +C S L RH R+HTG+KP+QC C + R+ L HI+TH+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRS-DHLTTHIRTHTGE 60
Query: 505 RPFVCEICGQGYKMKKALLVHVGMH 529
+PF C+ICG+ + H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 392 NPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
P+ C C++ F++ L +H+ IHTG FQC +C + F H H+GEKP
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 450 IKCSACGLAVLSSSHLKRHFRVH 472
C CG S KRH ++H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 475 EKPYQC--TTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 532
E+PY C +C +R R+ EL HI+ H+ +PF C IC + + L H+ H+G
Sbjct: 2 ERPYACPVESCDRRFSRS-DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 533 HPFTCHFCNKSFTQKIGLVKHLNIH 557
PF C C + F + +H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 364 RPFVC--EICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTR 421
RP+ C E C + + L H+ +H G PF C C ++F++ L H+ HTG
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 422 FQCDLCGKRFIHQKSFYIHKMVH 444
F CD+CG++F H +H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 31 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 88
RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 89 YQCHLCGKGFIHHTSYKFHQLVH 111
+ C +CG+ F K H +H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 254 CP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCS 311
CP +C +++ EL HI+ H+ +PF C IC + + L H+ H G PF C
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 312 FCNKSFTQKVGLQKHLPIH 330
C + F + ++H IH
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 427 CGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKR 486
C +RF H +H+G+KP +C C S HL H R HTGEKP+ C CG++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 487 LRRTVSELNAHIQTH 501
R+ E H + H
Sbjct: 72 FARS-DERKRHTKIH 85
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 60 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNV 117
P+ C C++ F++ L +H+ IH G K +QC +C + F H H+GE+
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 118 KCDICGLALTTKSHLNRHMLVH 139
CDICG RH +H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 7 CP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCH 64
CP +C +++ EL HI+ H+ +PF C IC + + L H+ H+G PF C
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 65 FCNKSFTQKIGLVKHLNIH 83
C + F + +H IH
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 351 SELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQ 410
EL HI+ H+ +PF C IC + + L H+ H G PF C C + F + +
Sbjct: 20 DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 411 KHLPIH 416
+H IH
Sbjct: 80 RHTKIH 85
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 94 CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKR 153
C + F H +H+G++ +C IC + HL H+ HTG++P C +CG++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 154 FAKKWNAQVHKK 165
FA+ + H K
Sbjct: 72 FARSDERKRHTK 83
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 306 NPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDL 363
P+ C C++ F++ L +H+ IHTG FQ N+ L HI+TH+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR--SDHLTTHIRTHTGE 60
Query: 364 RPFVCEICGQGYKMKKALLVHVGMH 388
+PF C+ICG+ + H +H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 505 RPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 562
RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H G K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 563 Y 563
+
Sbjct: 63 F 63
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 534 PFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQ 564
P+ C C++ F++ L +H+ IH G K +Q
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ 36
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 9 TCGKKWRTVSELNAHIQTHSDLRPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHF- 65
CG + +L AH+ H+ +PF C E C +G+ L H H+G FTC
Sbjct: 19 DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 66 -CNKSFTQKIGLVKHLNIHNGTK--KYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKC- 119
C+ FT K + KH N + K Y CH CGK F H K HQ H+ + +C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 120 -DICGLALTTKSHLNRHMLVHTG---DRPHECSVCGK 152
+ C + S L RH VH G + CS GK
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGK 175
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 13/161 (8%)
Query: 410 QKHLPIHTGSTRFQCDL--CGKRFIHQKSFYIHKMVHSGEKPIKC--SACGLAVLSSSHL 465
+K LP+ R+ C CG + H H+GEKP C C S HL
Sbjct: 3 EKALPV--VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL 60
Query: 466 KRHFRVHTGEKPYQCTTCGKRLRRTV-SELNAHIQTHSDLR--PFVC--EICGQGYKMKK 520
RH HTGEK + C + G LR T + + H +++ +VC E CG+ +K
Sbjct: 61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHN 120
Query: 521 ALLVHVGMHSGIHPFTC--HFCNKSFTQKIGLVKHLNIHNG 559
L VH H+ P+ C C+K F+ L +H +H G
Sbjct: 121 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 10/161 (6%)
Query: 278 RPFVCEI--CGQGYKMKKALLVHVGMHNGINPFTC--SFCNKSFTQKVGLQKHLPIHTGS 333
+ ++C CG Y L H+ H G PF C C K FT L +H HTG
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 334 TRFQWEQSHLNYVWRTVSELNAHIQTHSDLR--PFVC--EICGQGYKMKKALLVHVGMHN 389
F + + + T + + H +++ +VC E CG+ +K L VH H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT 130
Query: 390 GINPFTC--SFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCG 428
P+ C C+K F+ L++H +H G + D C
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 171
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 71/193 (36%), Gaps = 45/193 (23%)
Query: 308 FTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDLRP 365
+ CSF C ++ + LQ HL HTG +P
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGE------------------------------KP 42
Query: 366 FVC--EICGQGYKMKKALLVHVGMHNGINPFTCSF--CNKSFTQKVGLQKHL----PIHT 417
F C E C +G+ L H H G FTC C+ FT K ++KH I
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKI 102
Query: 418 GSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKC--SACGLAVLSSSHLKRHFRVHTG- 474
+ CGK F +H+ H+ + P +C C S LKRH +VH G
Sbjct: 103 CVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 162
Query: 475 --EKPYQCTTCGK 485
+K C+ GK
Sbjct: 163 PCKKDDSCSFVGK 175
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 24/121 (19%)
Query: 61 FTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGF--IHHTSYKFHQLVHSGE 114
+ C F C ++ + L HL H G K + C C KGF +HH + H L H+GE
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR--HSLTHTGE 70
Query: 115 RNVKCDI--CGLALTTKSHLNRHMLVHTGDRPHECSV---------CGKRFAKKWNAQVH 163
+N CD C L TTK+++ +H +R H + CGK F K +VH
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHF-----NRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125
Query: 164 K 164
+
Sbjct: 126 Q 126
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 505 RPFVCEI--CGQGYKMKKALLVHVGMHSGIHPFTC--HFCNKSFTQKIGLVKHLNIHNGT 560
+ ++C CG Y L H+ H+G PF C C K FT L +H H G
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 561 KKY 563
K +
Sbjct: 71 KNF 73
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 34/57 (59%)
Query: 421 RFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
R++CD CGK F H H+ H+GEKP KC CG A + SHL H RVHTG P
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
++Y+C CGK F H + H+ H+GE+ KCD CG A +SHL H VHTG P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%)
Query: 394 FTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+ C C KSF+ L KH HTG ++CD CGK FI + H VH+G P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%)
Query: 61 FTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSG 113
+ C C KSF+ L KH H G K Y+C CGK FI + H VH+G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 448 KPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGK 485
+ KC CG + SS L +H R HTGEKPY+C CGK
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGK 54
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 115 RNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKK 157
R KCD CG + + S L++H HTG++P++C CGK F ++
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQR 59
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 276 DLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGS 333
+ R + C+ CG+ + L H H G P+ C C K+F Q+ L H +HTGS
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 362 DLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGS 419
+ R + C+ CG+ + L H H G P+ C C K+F Q+ L H +HTGS
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 29 DLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT 86
+ R + C+ CG+ + L H H+G P+ C C K+F Q+ L+ H +H G+
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 503 DLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT 560
+ R + C+ CG+ + L H H+G P+ C C K+F Q+ L+ H +H G+
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 252 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFT 309
++C CGK + S+L+ H +TH+ +P+ C+ CG+ + + L+ H +H G P +
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 5 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFT 62
++C CGK + S+L+ H +TH+ +P+ C+ CG+ + + L+ H +H+G P +
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 476 KPYQCTTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPF 535
+ Y+C CGK + S+L+ H +TH+ +P+ C+ CG+ + + L+ H +H+G P
Sbjct: 17 RRYKCDECGKSFSHS-SDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Query: 536 T 536
+
Sbjct: 76 S 76
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 351 SELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFT 395
S+L+ H +TH+ +P+ C+ CG+ + + L+ H +H G P +
Sbjct: 32 SDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 535 FTCHFCNKSFTQKIGLVKHLNIHNGTKKYQ 564
+ C C KSF+ L KH H G K Y+
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYK 48
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQ 423
+ F+C+ CG+ + LL+H H P+TC C+K+F ++ L+ H IH+ F+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 424 CDLCGKRFIHQKSFYIHKMVH 444
C CGK F ++ +HK +H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQ 90
+ F+C+ CG+ + LL+H H+ P+TC C+K+F ++ L H IH+ K ++
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 91 CHLCGKGFIHHTSYKFHQLVH 111
C CGKGF + H+ +H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRPHE 146
K++ C CG+ F + H+ H+ ER CDIC A + HL H +H+ ++P +
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 147 CSVCGKRFAKKWNAQVHK 164
C CGK F + VHK
Sbjct: 76 CQECGKGFCQSRTLAVHK 93
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 37/79 (46%)
Query: 394 FTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCS 453
F C FC + FT+ L H HT + CD+C K F Q H+ +HS EKP KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 454 ACGLAVLSSSHLKRHFRVH 472
CG S L H +H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
+K C CG S +L H R HT E+PY C C K RR L H HS +P
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQ-DHLRDHRYIHSKEKP 73
Query: 507 FVCEICGQGYKMKKALLVHVGMH 529
F C+ CG+G+ + L VH +H
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLH 96
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 7 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFC 66
C CG+ + L H +TH+D RP+ C+IC + ++ + L H +HS PF C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 67 NKSFTQKIGLVKHLNIHNGT 86
K F Q L H +H T
Sbjct: 80 GKGFCQSRTLAVHKTLHMQT 99
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCT 481
F C CG+ F + IH+ H+ E+P C C A HL+ H +H+ EKP++C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 482 TCGK 485
CGK
Sbjct: 78 ECGK 81
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
+K + C CG+ ++ + L H +TH+D RP+ C+IC + ++ + L H +HS P
Sbjct: 15 KKEFICKFCGRHFTKSYN-LLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 535 FTCHFCNKSFTQKIGLVKHLNIHNGT 560
F C C K F Q L H +H T
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 254 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFC 313
C CG+ + L H +TH+D RP+ C+IC + ++ + L H +H+ PF C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 314 NKSFTQKVGLQKHLPIHTGST 334
K F Q L H +H ++
Sbjct: 80 GKGFCQSRTLAVHKTLHMQTS 100
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 30/111 (27%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQ 337
+ F+C+ CG+ + LL+H H P+TC C+K+F ++ L+ H IH
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH------- 68
Query: 338 WEQSHLNYVWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMH 388
S +PF C+ CG+G+ + L VH +H
Sbjct: 69 -----------------------SKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%)
Query: 61 FTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCD 120
F C FC + FT+ L+ H H + Y C +C K F + H+ +HS E+ KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 121 ICGLALTTKSHLNRHMLVH 139
CG L H +H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 353 LNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKH 412
L H +TH+D RP+ C+IC + ++ + L H +H+ PF C C K F Q L H
Sbjct: 33 LLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Query: 413 LPIHTGST 420
+H ++
Sbjct: 93 KTLHMQTS 100
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQ 564
+ F+C+ CG+ + LL+H H+ P+TC C+K+F ++ L H IH+ K ++
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 417 TGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGE- 475
+GS+ C++CGK F HK+ HSGEKP C CGL + H R H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 476 -KPYQCTTCGKRLRRTVSELNAHI-QTHS 502
KPY C +CGK R LN HI Q HS
Sbjct: 63 GKPYICQSCGKGFSRP-DHLNGHIKQVHS 90
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 254 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGI--NPFTCS 311
C CGK +R V LN H +HS +P+ C +CG +K K + HV H+G P+ C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 312 FCNKSFTQKVGLQKHLP-IHTGST 334
C K F++ L H+ +H+G +
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 7 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI--HPFTCH 64
C CGK +R V LN H +HS +P+ C +CG +K K + HV H G P+ C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 65 FCNKSFTQKIGLVKHL-NIHNG 85
C K F++ L H+ +H+G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 84 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGD- 142
+G+ C +CGK F H+L HSGE+ C +CGL K ++ H+ H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 143 -RPHECSVCGKRFAKKWNAQVHKKKVH 168
+P+ C CGK F++ + H K+VH
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 473 TGEKPYQCTTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 532
+G C CGK + R V LN H +HS +P+ C +CG +K K + HV H G
Sbjct: 3 SGSSGVACEICGK-IFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 533 --HPFTCHFCNKSFTQKIGLVKHL-NIHNG 559
P+ C C K F++ L H+ +H+G
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 346 VWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGI--NPFTCSFCNKSF 403
++R V LN H +HS +P+ C +CG +K K + HV H+G P+ C C K F
Sbjct: 16 IFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGF 75
Query: 404 TQKVGLQKHLP-IHTGST 420
++ L H+ +H+G +
Sbjct: 76 SRPDHLNGHIKQVHSGPS 93
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 34 VCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT--KKYQC 91
CEICG+ ++ L H HSG P++C C F +K + H+ H+G+ K Y C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 92 HLCGKGFIHHTSYKFH-QLVHSG 113
CGKGF H + VHSG
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSG 91
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 389 NGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGE- 447
+G + C C K F L +H H+G + C +CG RF + H H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 448 -KPIKCSACGLAVLSSSHLKRHFR-VHTG 474
KP C +CG HL H + VH+G
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 56 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGE- 114
SG C C K F L +H H+G K Y C +CG F +H H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 115 -RNVKCDICGLALTTKSHLNRHM-LVHTG 141
+ C CG + HLN H+ VH+G
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 367 VCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTR--FQC 424
CEICG+ ++ L H H+G P++C C F +K + H+ H GS + C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 425 DLCGKRFIHQKSFYIH-KMVHSG 446
CGK F H K VHSG
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSG 91
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 28/105 (26%)
Query: 281 VCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQWEQ 340
CEICG+ ++ L H H+G P++C C F +K + H+ H GS
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG----- 63
Query: 341 SHLNYVWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHV 385
+P++C+ CG+G+ L H+
Sbjct: 64 -----------------------KPYICQSCGKGFSRPDHLNGHI 85
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 5 HECPTCGKKWRTVSELNAHIQTH--SDLRPFVCEICGQGYKMKKALLVHVG-MHSG 57
+ CP CG +++ ++ H+++H S +P++C+ CG+G+ L H+ +HSG
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 252 HECPTCGKKWRTVSELNAHIQTH--SDLRPFVCEICGQGYKMKKALLVHV 299
+ CP CG +++ ++ H+++H S +P++C+ CG+G+ L H+
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI 85
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 508 VCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT 560
CEICG+ ++ L H HSG P++C C F +K + H+ H+G+
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 84 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDR 143
+G K Y C CGK F H + H +H G R C +CG K HL HM +HTG +
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 144 PHECSVCGKRFAKKWNAQVHK 164
P+EC++C KRF W H+
Sbjct: 65 PYECNICAKRFM--WRDSFHR 83
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 473 TGEKPYQCTTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 532
+G+K Y C CGK S+ + H+ H LRP+ C +CG+ +KMK L+ H+ +H+GI
Sbjct: 6 SGDKLYPCQ-CGKSFTHK-SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 533 HPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQA 565
P+ C+ C K F + +H+ + TK Y+A
Sbjct: 64 KPYECNICAKRFMWRDSFHRHVT--SCTKSYEA 94
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 257 CGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKS 316
CGK + S+ + H+ H LRP+ C +CG+ +KMK L+ H+ +H GI P+ C+ C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 317 FTQKVGLQKHL 327
F + +H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 10 CGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKS 69
CGK + S+ + H+ H LRP+ C +CG+ +KMK L+ H+ +H+GI P+ C+ C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 70 FTQKIGLVKHLNIHNGTKKYQ 90
F + +H+ + TK Y+
Sbjct: 75 FMWRDSFHRHVT--SCTKSYE 93
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 371 CGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKR 430
CG+ + K H+ MH G+ P+ C C K F K L H+ IHTG ++C++C KR
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 431 FIHQKSFYIH 440
F+ + SF+ H
Sbjct: 75 FMWRDSFHRH 84
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 351 SELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQ 410
S+ + H+ H LRP+ C +CG+ +KMK L+ H+ +H GI P+ C+ C K F +
Sbjct: 23 SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFH 82
Query: 411 KHL 413
+H+
Sbjct: 83 RHV 85
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 38 CGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKG 97
CG+ + K H+ MH G+ P+ C C K F K LV H+ IH G K Y+C++C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 98 FIHHTSYKFH 107
F+ S+ H
Sbjct: 75 FMWRDSFHRH 84
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 417 TGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEK 476
+G + C CGK F H+ H +H G +P C CG HL H ++HTG K
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 477 PYQCTTCGKRL 487
PY+C C KR
Sbjct: 65 PYECNICAKRF 75
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 445 SGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHSDL 504
SG+K C CG + S RH +H G +PY C CGK+ + L H++ H+ +
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF-KMKHHLVGHMKIHTGI 63
Query: 505 RPFVCEICGQGYKMKKALLVHV 526
+P+ C IC + + + + HV
Sbjct: 64 KPYECNICAKRFMWRDSFHRHV 85
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 399 CNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLA 458
C KSFT K +H+ +H G + C +CGK+F + H +H+G KP +C+ C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 459 VLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELN 495
+ RH T+C K +E N
Sbjct: 75 FMWRDSFHRHV-----------TSCTKSYEAAKAEQN 100
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 56 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
SG + C C KSFT K +H+++H G + Y C +CGK F H +H+G +
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 116 NVKCDICGLALTTKSHLNRHM 136
+C+IC + +RH+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 285 CGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLN 344
CG+ + K H+ MH G+ P+ C C K F K L H+ IHTG ++
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 345 YVWR 348
++WR
Sbjct: 75 FMWR 78
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 7 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHV 52
C CGKK++ L H++ H+ ++P+ C IC + + + + HV
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 254 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHV 299
C CGKK++ L H++ H+ ++P+ C IC + + + + HV
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 453 SACGLAVLSSSHLKRHFRVHTGEKPYQC--TTCGKRLRRTVSELNAHIQTHSDLRPFVCE 510
+ CG SSHLK H R HTGEKPY C CG + R+ EL H + H+ RPF C+
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARS-DELTRHYRKHTGHRPFQCQ 69
Query: 511 ICGQGYKMKKALLVHVGMH 529
C + + L +H+ H
Sbjct: 70 KCDRAFSRSDHLALHMKRH 88
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 10 CGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKA--LLVHVGMHSGIHPFTCHFCN 67
CGK + S L AH++TH+ +P+ C+ G G+K ++ L H H+G PF C C+
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 68 KSFTQKIGLVKHLNIH 83
++F++ L H+ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 257 CGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKA--LLVHVGMHNGINPFTCSFCN 314
CGK + S L AH++TH+ +P+ C+ G G+K ++ L H H G PF C C+
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 315 KSFTQKVGLQKHLPIH 330
++F++ L H+ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 395 TCSF--CNKSFTQKVGLQKHLPIHTGSTRFQCDL--CGKRFIHQKSFYIHKMVHSGEKPI 450
TC + C K++T+ L+ HL HTG + CD CG +F H H+G +P
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 451 KCSACGLAVLSSSHLKRHFRVH 472
+C C A S HL H + H
Sbjct: 67 QCQKCDRAFSRSDHLALHMKRH 88
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 483 CGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKA--LLVHVGMHSGIHPFTCHFC 540
CGK ++ S L AH++TH+ +P+ C+ G G+K ++ L H H+G PF C C
Sbjct: 13 CGKTYTKS-SHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 541 NKSFTQKIGLVKHLNIH 557
+++F++ L H+ H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 351 SELNAHIQTHSDLRPFVCEICGQGYKMKKA--LLVHVGMHNGINPFTCSFCNKSFTQKVG 408
S L AH++TH+ +P+ C+ G G+K ++ L H H G PF C C+++F++
Sbjct: 21 SHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDH 80
Query: 409 LQKHLPIH 416
L H+ H
Sbjct: 81 LALHMKRH 88
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 94 CGKGFIHHTSYKFHQLVHSGERNVKCDI--CGLALTTKSHLNRHMLVHTGDRPHECSVCG 151
CGK + + K H H+GE+ CD CG L RH HTG RP +C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 152 KRFAKKWNAQVHKKK 166
+ F++ + +H K+
Sbjct: 73 RAFSRSDHLALHMKR 87
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 309 TCSF--CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDLRPF 366
TC + C K++T+ L+ HL HTG + + + + EL H + H+ RPF
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 367 VCEICGQGYKMKKALLVHVGMH 388
C+ C + + L +H+ H
Sbjct: 67 QCQKCDRAFSRSDHLALHMKRH 88
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 62 TCHF--CNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVHSGERNV 117
TC + C K++T+ L HL H G K Y C CG F H H+G R
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 118 KCDICGLALTTKSHLNRHMLVH 139
+C C A + HL HM H
Sbjct: 67 QCQKCDRAFSRSDHLALHMKRH 88
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 371 CGQGYKMKKALLVHVGMHNGINPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQCDLCG 428
CG+ Y L H+ H G P+ C + C F + L +H HTG FQC C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 429 KRFIHQKSFYIHKMVH 444
+ F +H H
Sbjct: 73 RAFSRSDHLALHMKRH 88
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 453 SACGLAVLSSSHLKRHFRVHTGEKPYQC--TTCGKRLRRTVSELNAHIQTHSDLRPFVCE 510
+ CG SSHLK H R HTGEKPY C CG + R+ EL H + H+ RPF C+
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARS-DELTRHYRKHTGHRPFQCQ 70
Query: 511 ICGQGYKMKKALLVHVGMH 529
C + + L +H+ H
Sbjct: 71 KCDRAFSRSDHLALHMKRH 89
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 10 CGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKA--LLVHVGMHSGIHPFTCHFCN 67
CGK + S L AH++TH+ +P+ C+ G G+K ++ L H H+G PF C C+
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 68 KSFTQKIGLVKHLNIH 83
++F++ L H+ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 257 CGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKA--LLVHVGMHNGINPFTCSFCN 314
CGK + S L AH++TH+ +P+ C+ G G+K ++ L H H G PF C C+
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 315 KSFTQKVGLQKHLPIH 330
++F++ L H+ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 395 TCSF--CNKSFTQKVGLQKHLPIHTGSTRFQCDL--CGKRFIHQKSFYIHKMVHSGEKPI 450
TC + C K++T+ L+ HL HTG + CD CG +F H H+G +P
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 67
Query: 451 KCSACGLAVLSSSHLKRHFRVH 472
+C C A S HL H + H
Sbjct: 68 QCQKCDRAFSRSDHLALHMKRH 89
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 483 CGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKA--LLVHVGMHSGIHPFTCHFC 540
CGK ++ S L AH++TH+ +P+ C+ G G+K ++ L H H+G PF C C
Sbjct: 14 CGKTYTKS-SHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 541 NKSFTQKIGLVKHLNIH 557
+++F++ L H+ H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 351 SELNAHIQTHSDLRPFVCEICGQGYKMKKA--LLVHVGMHNGINPFTCSFCNKSFTQKVG 408
S L AH++TH+ +P+ C+ G G+K ++ L H H G PF C C+++F++
Sbjct: 22 SHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDH 81
Query: 409 LQKHLPIH 416
L H+ H
Sbjct: 82 LALHMKRH 89
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 94 CGKGFIHHTSYKFHQLVHSGERNVKCDI--CGLALTTKSHLNRHMLVHTGDRPHECSVCG 151
CGK + + K H H+GE+ CD CG L RH HTG RP +C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 152 KRFAKKWNAQVHKKK 166
+ F++ + +H K+
Sbjct: 74 RAFSRSDHLALHMKR 88
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 309 TCSF--CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDLRPF 366
TC + C K++T+ L+ HL HTG + + + + EL H + H+ RPF
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 67
Query: 367 VCEICGQGYKMKKALLVHVGMH 388
C+ C + + L +H+ H
Sbjct: 68 QCQKCDRAFSRSDHLALHMKRH 89
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 62 TCHF--CNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVHSGERNV 117
TC + C K++T+ L HL H G K Y C CG F H H+G R
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 67
Query: 118 KCDICGLALTTKSHLNRHMLVH 139
+C C A + HL HM H
Sbjct: 68 QCQKCDRAFSRSDHLALHMKRH 89
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 371 CGQGYKMKKALLVHVGMHNGINPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQCDLCG 428
CG+ Y L H+ H G P+ C + C F + L +H HTG FQC C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 429 KRFIHQKSFYIHKMVH 444
+ F +H H
Sbjct: 74 RAFSRSDHLALHMKRH 89
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 53/119 (44%), Gaps = 13/119 (10%)
Query: 371 CGQGYKMKKALLVHVGMHNGINPF---------TCSFCNKSFTQKVGLQKHLPIHTGSTR 421
C + + L+ HV M + P C KSF K L H+ +HTG
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 422 FQCDL--CGKRFIHQKSFYIHKMVHSGEKPIKC--SACGLAVLSSSHLKRHFRVHTGEK 476
F C CGK F ++ IHK H+GEKP KC C +SS K+H VHT +K
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 38 CGQGYKMKKALLVHVGM-HSGIHPFTCHFC--------NKSFTQKIGLVKHLNIHNGTKK 88
C + + L+ HV M H G H C KSF K LV H+ +H G K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 89 YQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDI--CGLALTTKSHLNRHMLVHTGDR 143
+ C CGK F + K H+ H+GE+ KC+ C S +HM VHT D+
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 253 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCEI--CGQGYKMKKALLVHVGMHNGINPFTC 310
ECP GK ++ +L HI+ H+ +PF C CG+ + + L +H H G PF C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 311 SF--CNKSFTQKVGLQKHLPIHTGS 333
F C++ F +KH+ +HT
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSD 148
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 6 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCEI--CGQGYKMKKALLVHVGMHSGIHPFTC 63
ECP GK ++ +L HI+ H+ +PF C CG+ + + L +H H+G PF C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 64 HF--CNKSFTQKIGLVKHLNIHNGTK 87
F C++ F KH+++H K
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 423 QCDLCGKRFIHQKSFYIHKMVHSGEKPIKCS--ACGLAVLSSSHLKRHFRVHTGEKPYQC 480
+C GK F + H VH+GEKP C CG S +LK H R HTGEKP++C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 481 --TTCGKRLRRTVSELNAHIQTHSDLR 505
C +R + S+ H+ H+ +
Sbjct: 124 EFEGCDRRFANS-SDRKKHMHVHTSDK 149
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 479 QCTTCGKRLRRTVSELNAHIQTHSDLRPFVCEI--CGQGYKMKKALLVHVGMHSGIHPFT 536
+C GK + +N HI+ H+ +PF C CG+ + + L +H H+G PF
Sbjct: 64 ECPREGKSFKAKYKLVN-HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 537 CHF--CNKSFTQKIGLVKHLNIHNGTK 561
C F C++ F KH+++H K
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Query: 66 CNKSFTQKIGLVKHLNI-HNGTKKYQCHLC--------GKGFIHHTSYKFHQLVHSGERN 116
C+++F+ LV H+ + H G + H+C GK F H VH+GE+
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 117 VKCDI--CGLALTTKSHLNRHMLVHTGDRPHECSV--CGKRFAKKWNAQVHKKKVHGLDV 172
C CG +L H HTG++P +C C +RFA + + H VH D
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH-MHVHTSDK 149
Query: 173 PGTT 176
G +
Sbjct: 150 SGPS 153
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 509 CEICGQGYKMKKALLVHVGMHSGIHPFTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQ 564
C G+ +K K L+ H+ +H+G PF C F C K F + L H H G K ++
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 48/144 (33%), Gaps = 35/144 (24%)
Query: 285 CGQGYKMKKALLVHVGMHNGINPF---------TCSFCNKSFTQKVGLQKHLPIHTGSTR 335
C + + L+ HV M + P C KSF K L H+ +HTG
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 336 FQWEQSHLNYVWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFT 395
F ++ L H +TH+ +PF CE G
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG----------------------- 127
Query: 396 CSFCNKSFTQKVGLQKHLPIHTGS 419
C++ F +KH+ +HT
Sbjct: 128 ---CDRRFANSSDRKKHMHVHTSD 148
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 454 ACGLAVLSSSHLKRHFRVHTGEKPYQCT--TCGKRLRRTVSELNAHIQTHSDLRPFVCEI 511
C SSHLK H R HTGEKPY+CT C R R+ EL H + H+ +PF C +
Sbjct: 22 GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARS-DELTRHYRKHTGAKPFQCGV 80
Query: 512 CGQGYKMKKALLVHVGMH 529
C + + L +H+ H
Sbjct: 81 CNRSFSRSDHLALHMKRH 98
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 251 IHEC--PTCGKKWRTVSELNAHIQTHSDLRPFVC--EICGQGYKMKKALLVHVGMHNGIN 306
IH C P C K + S L AH++TH+ +P+ C E C + L H H G
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIH 330
PF C CN+SF++ L H+ H
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMKRH 98
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 4 IHEC--PTCGKKWRTVSELNAHIQTHSDLRPFVC--EICGQGYKMKKALLVHVGMHSGIH 59
IH C P C K + S L AH++TH+ +P+ C E C + L H H+G
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHN 84
PF C CN+SF++ L H+ H
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 346 VWRTVSELNAHIQTHSDLRPFVC--EICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSF 403
V+ S L AH++TH+ +P+ C E C + L H H G PF C CN+SF
Sbjct: 26 VYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSF 85
Query: 404 TQKVGLQKHLPIH 416
++ L H+ H
Sbjct: 86 SRSDHLALHMKRH 98
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 492 SELNAHIQTHSDLRPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIG 549
S L AH++TH+ +P+ C E C + L H H+G PF C CN+SF++
Sbjct: 31 SHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDH 90
Query: 550 LVKHLNIHN 558
L H+ H
Sbjct: 91 LALHMKRHQ 99
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 399 CNKSFTQKVGLQKHLPIHTGSTRFQC--DLCGKRFIHQKSFYIHKMVHSGEKPIKCSACG 456
C K +T+ L+ HL HTG ++C + C RF H H+G KP +C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 457 LAVLSSSHLKRHFRVH 472
+ S HL H + H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 313 CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDLRPFVCEICG 372
C K +T+ L+ HL HTG ++ ++ + EL H + H+ +PF C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 373 QGYKMKKALLVHVGMHN 389
+ + L +H+ H
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 371 CGQGYKMKKALLVHVGMHNGINPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQCDLCG 428
C + Y L H+ H G P+ C++ C+ F + L +H HTG+ FQC +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 429 KRFIHQKSFYIHKMVH 444
+ F +H H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 94 CGKGFIHHTSYKFHQLVHSGERNVKC--DICGLALTTKSHLNRHMLVHTGDRPHECSVCG 151
C K + + K H H+GE+ KC + C L RH HTG +P +C VC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 152 KRFAKKWNAQVHKKK 166
+ F++ + +H K+
Sbjct: 83 RSFSRSDHLALHMKR 97
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 66 CNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDICG 123
C K +T+ L HL H G K Y+C C F H H+G + +C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 124 LALTTKSHLNRHMLVH 139
+ + HL HM H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 38 CGQGYKMKKALLVHVGMHSGIHPFTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQCHLCG 95
C + Y L H+ H+G P+ C + C+ F + L +H H G K +QC +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 96 KGFIHHTSYKFHQLVH 111
+ F H H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 512 CGQGYKMKKALLVHVGMHSGIHPFTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQ 564
C + Y L H+ H+G P+ C + C+ F + L +H H G K +Q
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 63/142 (44%), Gaps = 14/142 (9%)
Query: 399 CNKSFTQKVGLQKHLP---IHTGSTRFQCDLCG-----KRFIHQKSFYIHKMVHSGEKPI 450
C++ F + L H+ IH F C G + F Q +H H+GEKP
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 451 KCS--ACGLAVLSSSHLKRHFRVHTGEKPYQC--TTCGKRLRRTVSELNAHIQTHSDLRP 506
KC+ C + +LK H R HTGEKPY C C K +THS+ +P
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 507 FVCEI--CGQGYKMKKALLVHV 526
+VC++ C + Y +L HV
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHV 150
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 13/142 (9%)
Query: 257 CGKKWRTVSELNAHIQT---HSDLRPFVCEICG-----QGYKMKKALLVHVGMHNGINPF 308
C +++ + +L HI + H + + FVC G + +K + L+VH+ H G P
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 309 TCSF--CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHI-QTHSDLRP 365
C+F C KS+++ L+ HL HTG + E + + S+ H +THS+ +P
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 366 FVCEI--CGQGYKMKKALLVHV 385
+VC++ C + Y +L HV
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHV 150
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 10 CGKKWRTVSELNAHIQT---HSDLRPFVCEICG-----QGYKMKKALLVHVGMHSGIHPF 61
C +++ + +L HI + H + + FVC G + +K + L+VH+ H+G P
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 62 TCHF--CNKSFTQKIGLVKHLNIHNGTKKYQC--HLCGKGFIHHTSYKFHQ-LVHSGERN 116
C F C KS+++ L HL H G K Y C C K F + + HQ HS E+
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 117 VKCDI--CGLALTTKSHLNRHM 136
C + C T S L +H+
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHV 150
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 360 HSDLRPFVCEICG-----QGYKMKKALLVHVGMHNGINPFTCSF--CNKSFTQKVGLQKH 412
H + + FVC G + +K + L+VH+ H G P C+F C KS+++ L+ H
Sbjct: 29 HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH 88
Query: 413 LPIHTGSTRFQC--DLCGKRFIHQKSFYIHK-MVHSGEKPIKCS--ACGLAVLSSSHLKR 467
L HTG + C + C K F + H+ HS EKP C C S L++
Sbjct: 89 LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRK 148
Query: 468 HFRV 471
H +
Sbjct: 149 HVKT 152
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 66 CNKSFTQKIGLVKHLN---IHNGTKKYQCHLCG-----KGFIHHTSYKFHQLVHSGERNV 117
C++ F + LV H+N IH K++ CH G + F H H+GE+
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 118 KC--DICGLALTTKSHLNRHMLVHTGDRPHEC--SVCGKRFAKKWNAQVHKKKVHGLDVP 173
KC + C + + +L H+ HTG++P+ C C K F+ + H+ + H + P
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 501 HSDLRPFVCEICG-----QGYKMKKALLVHVGMHSGIHPFTCHF--CNKSFTQKIGLVKH 553
H + + FVC G + +K + L+VH+ H+G P C F C KS+++ L H
Sbjct: 29 HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH 88
Query: 554 LNIHNGTKKY 563
L H G K Y
Sbjct: 89 LRSHTGEKPY 98
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 12/129 (9%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFR---VHTGEKPYQC--TTCGKRLRRTVSE--LNAHIQ 499
E + C S L H +H K + C C + LR ++ L H++
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 500 THSDLRPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHF--CNKSFTQKIGLVKHLN 555
H+ +P C E C + Y + L H+ H+G P+ C C+K+F+ KH N
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 556 -IHNGTKKY 563
H+ K Y
Sbjct: 121 RTHSNEKPY 129
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
++CD C F ++ + HK VH+GEKP +C+ CG ++LK H R+H+GEKP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
P+ C C SF K L H +HTG ++C++CG +F + H +HSGEKP
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
P+ C C SF K L H +H G K Y+C++CG F + K H +HSGE+
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
+KP KC C + +L H VHTGEKPY+C CG + R + L H + HS +P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPAN-LKTHTRIHSGEKP 73
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
K Y+C C F + + H+ VH+GE+ +C+ICG ++L H +H+G++P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDVP 173
++ KCD C + K +L H VHTG++P+ C++CG +F + N + H ++H + P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH-TRIHSGEKP 73
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
+P+ C+ C ++ K L H +H+G P+ C+ C F + L H IH+G K
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
+P+ C+ C ++ K L H +H+G P+ C+ C F + L H IH+G K
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGS 333
+P+ C+ C ++ K L H +H G P+ C+ C F + L+ H IH+G
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGS 419
+P+ C+ C ++ K L H +H G P+ C+ C F + L+ H IH+G
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
+KPY+C C R L +H H+ +P+ C ICG + L H +HSG P
Sbjct: 15 DKPYKCDRCQASFRYK-GNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 5 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
++C C +R L +H H+ +P+ C ICG + L H +HSG P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 252 HECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINP 307
++C C +R L +H H+ +P+ C ICG + L H +H+G P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 28/87 (32%), Gaps = 30/87 (34%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDLRPF 366
P+ C C SF K L H +HTG +P+
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGE------------------------------KPY 46
Query: 367 VCEICGQGYKMKKALLVHVGMHNGINP 393
C ICG + L H +H+G P
Sbjct: 47 RCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQ 564
P+ C C SF K L H +H G K Y+
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYR 47
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 82 IHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTG 141
I +G Y C +C + ++ TS + H +HS E+ C C + +H + HTG
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 142 DRPHECSVCGKRFAKKWNAQVHKKKVHGLDVPGTT--HRVMP 181
+R ++C CGK F H K VH D G + +R+ P
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHP 117
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 366 FVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCD 425
++C +C + Y +L H +H+ + C +C K F KH HTG R+QC
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 426 LCGKRFIHQKSFYIH-KMVHSGE 447
CGK FI+ + H K VHS +
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQD 105
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 33 FVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCH 92
++C +C + Y +L H +HS + C +C K F KH H G ++YQC
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 93 LCGKGFIHHTSYKFH-QLVHSGE 114
CGK FI++ H + VHS +
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQD 105
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 389 NGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEK 448
+G + C C +S+ L++H IH+ ++ C C K F + H++ H+GE+
Sbjct: 18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 449 PIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
+C ACG + ++ + H + + P
Sbjct: 78 RYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%)
Query: 415 IHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTG 474
I G + C +C + ++ S H +HS EK C C + + +H HTG
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 475 EKPYQCTTCGK 485
E+ YQC CGK
Sbjct: 76 ERRYQCLACGK 86
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 507 FVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQAL 566
++C +C + Y +L H +HS + C +C K F KH H G ++YQ L
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 280 FVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQ 337
++C +C + Y +L H +H+ + C +C K F KH HTG R+Q
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 440 HKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRL----RRTVSELN 495
++++ G C C + + + L+RHF +H+ EK Y C C K RT E++
Sbjct: 13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH 72
Query: 496 AHIQTHSDLRPFVCEICGQGYKMKKALLVHV 526
H+ R + C CG+ + + + H+
Sbjct: 73 -----HTGERRYQCLACGKSFINYQFMSSHI 98
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 7 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFC 66
C C + + ++ L H HS + + C C + + + + H H+G + C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 67 NKSFTQKIGLVKHL-NIHN-----GTKKYQCHLCGKGFIHHTSY 104
KSF + H+ ++H+ +K Y+ H C I +Y
Sbjct: 85 GKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYAY 128
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 30/74 (40%)
Query: 254 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFC 313
C C + + ++ L H HS + + C C + + + + H H G + C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 314 NKSFTQKVGLQKHL 327
KSF + H+
Sbjct: 85 GKSFINYQFMSSHI 98
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 473 TGEKPYQCTTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGI 532
G Y C C KR ++ L H HS + + C C + + + + H H+G
Sbjct: 18 DGRVYYICIVC-KRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGE 76
Query: 533 HPFTCHFCNKSFTQKIGLVKHL 554
+ C C KSF + H+
Sbjct: 77 RRYQCLACGKSFINYQFMSSHI 98
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 26/64 (40%)
Query: 350 VSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGL 409
++ L H HS + + C C + + + + H H G + C C KSF +
Sbjct: 35 LTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFM 94
Query: 410 QKHL 413
H+
Sbjct: 95 SSHI 98
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELN 495
EKP C CG A SS L +H RVHTGEKPY+C CGK + +N
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIH 83
+P+ C CG+ + L+ H +H+G P+ C C K+F+Q GL+ H IH
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIH 557
+P+ C CG+ + L+ H +H+G P+ C C K+F+Q GL+ H IH
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 28/52 (53%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHT 473
+ C CGK F H+ VH+GEKP KC CG A +S L H R+HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 59 HPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHS 112
P+ C C K+F++ LV+H +H G K Y+C CGK F ++ HQ +H+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHT 331
+P+ C CG+ + L+ H +H G P+ C C K+F+Q GL H IHT
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHT 417
+P+ C CG+ + L+ H +H G P+ C C K+F+Q GL H IHT
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHT 140
K Y C CGK F + HQ VH+GE+ KC CG A + S L H +HT
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHS 530
EKPY C CGK R+ S L H + H+ +P+ C CG+ + L+ H +H+
Sbjct: 12 EKPYGCVECGKAFSRS-SILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 165
E+ C CG A + S L +H VHTG++P++C CGK F++ H++
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 392 NPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHS 445
P+ C C K+F++ L +H +HTG ++C CGK F H+ +H+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 7 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHS 56
C CGK + S L H + H+ +P+ C CG+ + L+ H +H+
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 254 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMH 302
C CGK + S L H + H+ +P+ C CG+ + L+ H +H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 533 HPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQAL 566
P+ C C K+F++ LV+H +H G K Y+ L
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCL 46
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHSD 503
E+P C+ CG +S L RH R H G +P C CGK R SE+N H++ H +
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCF-RDQSEVNRHLKVHQN 57
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIH 330
RPF C CG+ Y+ L H H G P +C C K F + + +HL +H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIH 416
RPF C CG+ Y+ L H H G P +C C K F + + +HL +H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIH 83
RPF C CG+ Y+ L H H G P +C C K F + + +HL +H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIH 557
RPF C CG+ Y+ L H H G P +C C K F + + +HL +H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVHSGE 114
PF C+FC K++ GL +H H G + C CGK F + H VH +
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGE 447
PF C+FC K++ GL +H H G C CGK F Q H VH +
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGE 475
F C+ CGK + H+ H G +P C CG S + RH +VH +
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 23/52 (44%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKK 165
ER C+ CG S L+RH H G RP C CGK F + H K
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVH 139
+ + C+ CGK + + H+ H G R C CG +S +NRH+ VH
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 7 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMH 55
C CGK +R S L+ H + H RP C CG+ ++ + + H+ +H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 254 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMH 302
C CGK +R S L+ H + H RP C CG+ ++ + + H+ +H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMH 529
E+P+ C CGK R S L+ H + H RP C CG+ ++ + + H+ +H
Sbjct: 2 ERPFFCNFCGKTYR-DASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSD 362
PF C+FC K++ GL +H H G + +R SE+N H++ H +
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPE--CGKCFRDQSEVNRHLKVHQN 57
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 7 CPTCGKKWRTVSELNAHIQTHSD 29
CP CGK +R SE+N H++ H +
Sbjct: 35 CPECGKCFRDQSEVNRHLKVHQN 57
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 254 CPTCGKKWRTVSELNAHIQTHSD 276
CP CGK +R SE+N H++ H +
Sbjct: 35 CPECGKCFRDQSEVNRHLKVHQN 57
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
PF C+FC K++ GL +H H G +
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAHLGYR 31
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 448 KPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRT 490
KP +C C S HL H R HTGEKP+ C CG++ R+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 44
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 391 INPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMV 443
+ PF C C ++F++ L H+ HTG F CD+CG++F H+ +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 118 KCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDV 172
+C IC + HL H+ HTG++P C +CG++FA+ + H+ H L +
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPI 59
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 277 LRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPI 329
++PF C IC + + L H+ H G PF C C + F + ++H I
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 363 LRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPI 415
++PF C IC + + L H+ H G PF C C + F + ++H I
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 30 LRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNI 82
++PF C IC + + L H+ H+G PF C C + F + +H +I
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 504 LRPFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNI 556
++PF C IC + + L H+ H+G PF C C + F + +H +I
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 58 IHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLV 110
+ PF C C ++F++ L H+ H G K + C +CG+ F K H+ +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 476 KPYQCTTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGY 516
KP+QC C + R+ L HI+TH+ +PF C+ICG+ +
Sbjct: 2 KPFQCRICMRNFSRS-DHLTTHIRTHTGEKPFACDICGRKF 41
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRH 468
FQC +C + F H H+GEKP C CG S KRH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 6 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGY 42
+C C + + L HI+TH+ +PF C+ICG+ +
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 253 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGY 289
+C C + + L HI+TH+ +PF C+ICG+ +
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRH 135
K +QC +C + F H H+GE+ CDICG RH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 353 LNAHIQTHSDLRPFVCEICGQGY 375
L HI+TH+ +PF C+ICG+ +
Sbjct: 19 LTTHIRTHTGEKPFACDICGRKF 41
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 448 KPIKC--SACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHS 502
+P C +C S L RH R+HTG+KP+QC C + R+ L HI+TH+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRS-DHLTTHIRTHT 73
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 277 LRPFVC--EICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHT 331
+RP+ C E C + + L H+ +H G PF C C ++F++ L H+ HT
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 363 LRPFVC--EICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHT 417
+RP+ C E C + + L H+ +H G PF C C ++F++ L H+ HT
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 30 LRPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIH 83
+RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 504 LRPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIH 557
+RP+ C E C + + L H+ +H+G PF C C ++F++ L H+ H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 476 KPYQC--TTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHS 530
+PY C +C +R R+ EL HI+ H+ +PF C IC + + L H+ H+
Sbjct: 18 RPYACPVESCDRRFSRS-DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 427 CGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHT 473
C +RF H +H+G+KP +C C S HL H R HT
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 5 HECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMHS 56
+ CP +C +++ EL HI+ H+ +PF C IC + + L H+ H+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 58 IHPFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGF 98
+ P+ C C++ F++ L +H+ IH G K +QC +C + F
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 391 INPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHS 445
+ P+ C C++ F++ L +H+ IHTG FQC +C + F H H+
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 252 HECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMH 302
+ CP +C +++ EL HI+ H+ +PF C IC + + L H+ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 122 CGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVH 163
C + L RH+ +HTG +P +C +C + F++ + H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 351 SELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMH 388
EL HI+ H+ +PF C IC + + L H+ H
Sbjct: 35 DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 305 INPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHS 361
+ P+ C C++ F++ L +H+ IHTG FQ N+ L HI+TH+
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR--SDHLTTHIRTHT 73
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 87 KKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHT 140
+ Y C + C + F H +H+G++ +C IC + HL H+ HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 532 IHPFTC--HFCNKSFTQKIGLVKHLNIHNGTKKYQ 564
+ P+ C C++ F++ L +H+ IH G K +Q
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ 51
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 33 FVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLN-IHNGT 86
FVCE+C + + ++ L H H+ P+ C CN++FT++ L++H IH+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 507 FVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLN-IHNGT 560
FVCE+C + + ++ L H H+ P+ C CN++FT++ L++H IH+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 280 FVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHL-PIHTGS 333
FVCE+C + + ++ L H H P+ C CN++FT++ L +H IH+G+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 366 FVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHL-PIHTGS 419
FVCE+C + + ++ L H H P+ C CN++FT++ L +H IH+G+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 119 CDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVHG 169
C++C A + HL RH HT ++P+ C +C + F ++ H +K+H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 452 CSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRR 489
C C A HLKRH+R HT EKPY C C + R
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTR 42
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 61 FTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFH-QLVHSG 113
F C C ++F ++ L +H H K Y C LC + F H Q +HSG
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 394 FTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIH-KMVHSG 446
F C C ++F ++ L++H HT + C LC + F + H + +HSG
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHF-RVHTG 474
F C++C + F Q+ H H+ EKP C C A L RH ++H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 7 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHV-GMHSG 57
C C + + L H ++H++ +P+ C +C + + + L+ H +HSG
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 89 YQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHML-VHTGD 142
+ C +C + F K H H+ E+ C +C A T + L RH +H+G+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 254 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHV-GMHNG 304
C C + + L H ++H++ +P+ C +C + + + L+ H +H+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 61 FTCHF--CNKSFTQKIGLVKHLNIHNGTKKYQCHL--CGKGF--IHHTSYKFHQLVHSGE 114
+ C F C ++ + L HL+ H G K + C C KGF +HH + H L H+GE
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTR--HSLTHTGE 61
Query: 115 RNVKCDI--CGLALTTKSHLNRHM 136
+N CD C L TTK+++ +H
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHF 85
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 10 CGKKWRTVSELNAHIQTHSDLRPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHF-- 65
CG + +L AH+ H+ +PF C E C +G+ L H H+G FTC
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 66 CNKSFTQKIGLVKHLN-IHN 84
C+ FT K + KH N HN
Sbjct: 71 CDLRFTTKANMKKHFNRFHN 90
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 421 RFQCDL--CGKRFIHQKSFYIHKMVHSGEKPIKC--SACGLAVLSSSHLKRHFRVHTGEK 476
R+ C CG + H H+GEKP C C S HL RH HTGEK
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 477 PYQCTTCGKRLRRTV 491
+ C + G LR T
Sbjct: 63 NFTCDSDGCDLRFTT 77
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 257 CGKKWRTVSELNAHIQTHSDLRPFVC--EICGQGYKMKKALLVHVGMHNGINPFTCSF-- 312
CG + +L AH+ H+ +PF C E C +G+ L H H G FTC
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 313 CNKSFTQKVGLQKHL 327
C+ FT K ++KH
Sbjct: 71 CDLRFTTKANMKKHF 85
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 364 RPFVCEI--CGQGYKMKKALLVHVGMHNGINPFTC--SFCNKSFTQKVGLQKHLPIHTGS 419
+ ++C CG Y L H+ H G PF C C K FT L +H HTG
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 420 TRFQCDL--CGKRFIHQKSFYIH 440
F CD C RF + + H
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKH 84
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 87 KKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKC--DICGLALTTKSHLNRHMLVHTGD 142
K+Y C CG + + + H H+GE+ C + C T+ HL RH L HTG+
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 143 RPHECSV--CGKRFAKKWNAQVHKKKVHGL 170
+ C C RF K N + H + H +
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNRFHNI 91
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 476 KPYQCT--TCGKRLRRTVSELNAHIQTHSDLRPFVC--EICGQGYKMKKALLVHVGMHSG 531
K Y C+ CG + +L AH+ H+ +PF C E C +G+ L H H+G
Sbjct: 2 KRYICSFADCGAAYNKNW-KLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 60
Query: 532 IHPFTCHF--CNKSFTQKIGLVKHLN-IHN 558
FTC C+ FT K + KH N HN
Sbjct: 61 EKNFTCDSDGCDLRFTTKANMKKHFNRFHN 90
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 278 RPFVCEI--CGQGYKMKKALLVHVGMHNGINPFTC--SFCNKSFTQKVGLQKHLPIHTGS 333
+ ++C CG Y L H+ H G PF C C K FT L +H HTG
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 334 TRFQWEQSHLNYVWRTVSELNAHIQTHSDLR 364
F + + + T + + H +++
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 505 RPFVCEI--CGQGYKMKKALLVHVGMHSGIHPFTC--HFCNKSFTQKIGLVKHLNIHNGT 560
+ ++C CG Y L H+ H+G PF C C K FT L +H H G
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 561 KKY 563
K +
Sbjct: 62 KNF 64
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 40/112 (35%), Gaps = 36/112 (32%)
Query: 308 FTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHSDLRP 365
+ CSF C ++ + LQ HL HTG +P
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGE------------------------------KP 33
Query: 366 FVC--EICGQGYKMKKALLVHVGMHNGINPFTCSF--CNKSFTQKVGLQKHL 413
F C E C +G+ L H H G FTC C+ FT K ++KH
Sbjct: 34 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 85
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 454 ACGLAVLSSSHLKRHFRVHTGEKPYQCT--TCGKRLRRTVSELNAHIQTH 501
CG SSHLK H R HTGEKP+ C+ C +R R+ EL+ H +TH
Sbjct: 24 GCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS-DELSRHRRTH 72
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 275 SDLRPFVCE--ICGQGYKMKKALLVHVGMHNGINPFTCSF--CNKSFTQKVGLQKHLPIH 330
S +R +C CG+ Y L H H G PF+CS+ C + F + L +H H
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 361 SDLRPFVCE--ICGQGYKMKKALLVHVGMHNGINPFTCSF--CNKSFTQKVGLQKHLPIH 416
S +R +C CG+ Y L H H G PF+CS+ C + F + L +H H
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 427 CGKRFIHQKSFYIHKMVHSGEKPIKCS--ACGLAVLSSSHLKRHFRVH 472
CGK + H H+GEKP CS C S L RH R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 122 CGLALTTKSHLNRHMLVHTGDRPHECS--VCGKRFAKKWNAQVHKK 165
CG SHL H HTG++P CS C +RFA+ H++
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 28 SDLRPFVCE--ICGQGYKMKKALLVHVGMHSGIHPFTCHF--CNKSFTQKIGLVKHLNIH 83
S +R +C CG+ Y L H H+G PF+C + C + F + L +H H
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 502 SDLRPFVCE--ICGQGYKMKKALLVHVGMHSGIHPFTCHF--CNKSFTQKIGLVKHLNIH 557
S +R +C CG+ Y L H H+G PF+C + C + F + L +H H
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 8 PTCGKKWRTVSELNAHIQTHSDLRPFVCEI--CGQGYKMKKALLVHVGMH 55
P CGK + S L AH +TH+ +PF C C + + L H H
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 255 PTCGKKWRTVSELNAHIQTHSDLRPFVCEI--CGQGYKMKKALLVHVGMH 302
P CGK + S L AH +TH+ +PF C C + + L H H
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 6 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMH 55
EC CGK +R+ LN H++TH+ +P+ CE C K +L H+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 253 ECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMH 302
EC CGK +R+ LN H++TH+ +P+ CE C K +L H+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%)
Query: 418 GSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVH 472
GS+ +C CGK F IH H+GEKP KC C A + L+ H H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 282 CEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIH 330
C CG+ ++ L +H+ H G P+ C FC + QK L+ HL H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 368 CEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIH 416
C CG+ ++ L +H+ H G P+ C FC + QK L+ HL H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 446 GEKPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTH 501
G +CS CG S+ +L H R HTGEKPY+C C + S L H++ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTS-LRYHLERH 55
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 35 CEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIH 83
C CG+ ++ L +H+ H+G P+ C FC + QK L HL H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 509 CEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIH 557
C CG+ ++ L +H+ H+G P+ C FC + QK L HL H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 113 GERNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVH 168
G + +C CG + +LN H+ HTG++P++C C A+K + + H ++ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 474 GEKPYQCTTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMH 529
G +C+ CGK R LN H++TH+ +P+ CE C K +L H+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYY-LNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 85 GTKKYQCHLCGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVH 139
G+ +C CGK F + H H+GE+ KC+ C A K+ L H+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 339 EQSHLNYVWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHVGMH 388
E S+ +R+ LN H++TH+ +P+ CE C K +L H+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 21/49 (42%)
Query: 63 CHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGFIHHTSYKFHQLVH 111
C +C K F L HL H G K Y+C C TS ++H H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 390 GINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLC 427
G + CS+C K F L HL HTG ++C+ C
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFC 38
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC+ CG +SHL H+R+HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC+ CG T SHL H +HTG++P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C+ C K FTQ L H IH G K
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C+ C K FTQ L H IH G K
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSA 454
++C+ CGK F H +H+GEKP S+
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
P+ C+ C K FTQ L H IHTG
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
P+ C+ C K FTQ L H IHTG
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIHTG 37
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC+ CG A +S L RH R+HTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC+ CG A + S L RH +HTG++P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C+ C K+F+Q L +H IH G K
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C+ C K+F+Q L +H IH G K
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C+ CGK F + HQ +H+GE+
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C+ CGK F H+ +H+GEKP
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
P+ C+ C K+F+Q L +H IHTG
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTG 37
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
P+ C+ C K+F+Q L +H IHTG
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTG 37
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
EKPY+C CGK +T S+L H + H+ +P
Sbjct: 10 EKPYKCNECGKAFSQT-SKLARHQRIHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP C+ CG + + SHL RH R+HTGEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ C+ CG + KSHLNRH +HTG++P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
P+ C+ C KSF QK L +H IHTG
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTG 37
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
P+ C+ C KSF QK L +H IHTG
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTG 37
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+ C+ CGK FI + H+ +H+GEKP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C+ C KSF QK L +H IH G K
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C+ C KSF QK L +H IH G K
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEK 39
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 280 FVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHL 327
++CE CG K L H+ H + P+ C++CN SF K L KH+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 366 FVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHL 413
++CE CG K L H+ H + P+ C++CN SF K L KH+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 33 FVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 88
++CE CG K L H+ H+ + P+ C +CN SF K L KH+ +KK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 507 FVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKK 562
++CE CG K L H+ H+ + P+ C +CN SF K L KH+ +KK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 7 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHV 52
C CG + + S L HI+TH+D+RP+ C C +K K L H+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 254 CPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHV 299
C CG + + S L HI+TH+D+RP+ C C +K K L H+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 478 YQCTTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHV 526
Y C CG R ++ S L HI+TH+D+RP+ C C +K K L H+
Sbjct: 2 YICEECGIRXKKP-SMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 452 CSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQT 500
C CG+ S LK+H R HT +PY CT C +T L H+++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSF-KTKGNLTKHMKS 51
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 119 CDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVH-KKKVHG 169
C+ CG+ S L +H+ HT RP+ C+ C F K N H K K H
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 351 SELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHV 385
S L HI+TH+D+RP+ C C +K K L H+
Sbjct: 15 SMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC+ CG +SHL RH RVHTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC+ CG T SHL RH VHTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C+ C K FTQ L +H +H G K
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C+ C K FTQ L +H +H G K
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
P+ C+ C K FTQ L +H +HTG
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTG 37
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
P+ C+ C K FTQ L +H +HTG
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTG 37
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSA 454
++C+ CGK F H+ VH+G KP S+
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC CG A + HL H R+HTGEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
PF C C K+F Q I L HL IH G K
Sbjct: 12 PFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
PF C C K+F Q I L HL IH G K
Sbjct: 12 PFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC CG A HL H+ +HTG++P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
PF C C K+F Q + L HL IHTG
Sbjct: 12 PFKCKECGKAFRQNIHLASHLRIHTG 37
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
PF C C K+F Q + L HL IHTG
Sbjct: 12 PFKCKECGKAFRQNIHLASHLRIHTG 37
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
EKP++C CGK R+ + L +H++ H+ +P
Sbjct: 10 EKPFKCKECGKAFRQNI-HLASHLRIHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC+ CG +S+L RH R+HTGEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC+ CG S+L+RH +HTG++P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSA 454
++C+ CGK F H H+ +H+GEKP S+
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C+ CGK F H++ HQ +H+GE+
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC+ CG +SHL RH +HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC+ CG T SHL RH +HTG++P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C+ C K FTQ L +H IH G K
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C+ C K FTQ L +H IH G K
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSA 454
++C+ CGK F H+ +H+GEKP S+
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
P+ C+ C K FTQ L +H IHTG
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTG 37
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
P+ C+ C K FTQ L +H IHTG
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTG 37
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
E+P KC+ CG + + S+HL +H R+HTGEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
ER KC+ CG + +HL +H +HTG++P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 423 QCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+C+ CGK FI H+ +H+GEKP
Sbjct: 14 KCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P C+ C KSF Q L++H IH G K
Sbjct: 12 PHKCNECGKSFIQSAHLIQHQRIHTGEK 39
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P C+ C KSF Q L++H IH G K
Sbjct: 12 PHKCNECGKSFIQSAHLIQHQRIHTGEK 39
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KCDICG + +S LNRH +VHT ++P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC CG + S L RH VHT EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
F+CD+CGK F + H MVH+ EKP
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP C CG A + S L+ H R+HTGEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y C CGK FIH + + HQ +H+GE+
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+ C+ CGK FIH H+ +H+GEKP
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ C+ CG A S L H +HTG++P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTGS 333
P+ C C K+F LQ+H IHTG
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTGE 38
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTGS 419
P+ C C K+F LQ+H IHTG
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTGE 38
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP +C CG A ++HL +H RVHTGEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ +C CG A + +HL +H VHTG++P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C C K+F+Q L++H +H G K
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C C K+F+Q L++H +H G K
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C CGK F T HQ VH+GE+
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C CGK F H+ VH+GEKP
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC+ CG +SHL RH +HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC+ CG T SHL RH +HTG++P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C+ C K FTQ LV+H IH G K
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C+ C K FTQ LV+H IH G K
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSA 454
++C+ CGK F H+ +H+GEKP S+
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
P+ C+ C K FTQ L +H IHTG
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIHTG 37
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
P+ C+ C K FTQ L +H IHTG
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIHTG 37
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 448 KPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
KP +C+ CG A +S L RH RVHTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 118 KCDICGLALTTKSHLNRHMLVHTGDRP 144
+C+ CG A + S L RH VHTG++P
Sbjct: 14 QCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K YQC+ CGK F + HQ VH+GE+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+QC+ CGK F H+ VH+GEKP
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C+ C K+F+Q L +H +H G K
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C+ C K+F+Q L +H +H G K
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
P+ C+ C K+F+Q L +H +HTG
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTG 37
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
P+ C+ C K+F+Q L +H +HTG
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTG 37
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 476 KPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
KPYQC CGK +T S+L H + H+ +P
Sbjct: 11 KPYQCNECGKAFSQT-SKLARHQRVHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP +C CG +SHL H RVHTGEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSA 454
FQC+ CGKRF + H+ VH+GEKP S+
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ +C+ CG T SHL+ H VHTG++P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
EKP+QC CGKR + S L++H + H+ +P
Sbjct: 10 EKPFQCEECGKRFTQN-SHLHSHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K +QC CGK F ++ HQ VH+GE+
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
PF C C K FTQ L H +HTG
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVHTG 37
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
PF C C K FTQ L H +HTG
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVHTG 37
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
PF C C K FTQ L H +H G K
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
PF C C K FTQ L H +H G K
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVHTGEK 39
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC CG + HL +H RVHTGEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC CG + + HL +H VHTG++P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
PF C C KS+ Q++ L +H +H G K
Sbjct: 12 PFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
PF C C KS+ Q++ L +H +H G K
Sbjct: 12 PFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
PF C C KS+ Q+V L +H +HTG
Sbjct: 12 PFKCGECGKSYNQRVHLTQHQRVHTG 37
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
PF C C KS+ Q+V L +H +HTG
Sbjct: 12 PFKCGECGKSYNQRVHLTQHQRVHTG 37
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSA 454
F+C CGK + + H+ VH+GEKP S+
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 21/33 (63%)
Query: 445 SGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
SG KP CS CG A S S+L H R HTGEKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 112 SGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
SG + C CG A +KS+L HM HTG++P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 56 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
SG+ P+ C C K+F K L+ H+ H G K
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 530 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
SG+ P+ C C K+F K L+ H+ H G K
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 275 SDLRPFVCEICGQGYKMKKALLVHVGMHNGINP 307
S ++P+ C CG+ ++ K L++H+ H G P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 361 SDLRPFVCEICGQGYKMKKALLVHVGMHNGINP 393
S ++P+ C CG+ ++ K L++H+ H G P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 28 SDLRPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
S ++P+ C CG+ ++ K L++H+ H+G P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 502 SDLRPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
S ++P+ C CG+ ++ K L++H+ H+G P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 473 TGEKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
+G KPY C+ CGK R+ S L H++TH+ +P
Sbjct: 6 SGVKPYGCSECGKAF-RSKSYLIIHMRTHTGEKP 38
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 303 NGINPFTCSFCNKSFTQKVGLQKHLPIHTG 332
+G+ P+ CS C K+F K L H+ HTG
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTG 35
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 389 NGINPFTCSFCNKSFTQKVGLQKHLPIHTG 418
+G+ P+ CS C K+F K L H+ HTG
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTG 35
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 417 TGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+G + C CGK F + IH H+GEKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP +C CG A ++L +H R+HTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ +C CG A K++L +H +HTG++P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C C K+F QK L +H IH G K
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C C K+F QK L +H IH G K
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
P+ C C K+F QK L +H IHTG
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTG 37
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
P+ C C K+F QK L +H IHTG
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTG 37
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C CGK F + + H+ +H+GEKP
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C CGK F + HQ +H+GE+
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 470 RVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHSDLR----PFVCEICGQGYKMKKALLVH 525
R HTGEKPY C+ C K R+ L+ H + + D FVC CG+ + + + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQK-QLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Query: 526 V 526
Sbjct: 67 A 67
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 272 QTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGIN----PFTCSFCNKSFTQKVGLQKHL 327
+TH+ +P+ C C + ++ K+ L +H ++ N F CS C K+FT++ + +H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 328 PIHTGSTRFQWEQS 341
G + E S
Sbjct: 68 DNCAGPDGVEGENS 81
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 358 QTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGIN----PFTCSFCNKSFTQKVGLQKHL 413
+TH+ +P+ C C + ++ K+ L +H ++ N F CS C K+FT++ + +H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 388 HNGINPFTCSFCNKSFTQKVGLQKHLPIHTG----STRFQCDLCGKRFIHQKSFYIH 440
H G P+ CS C+K+F QK L H + F C CGK F + + H
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 25 QTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIH----PFTCHFCNKSFTQKIGLVKHL 80
+TH+ +P+ C C + ++ K+ L +H + + F C C K+FT++ + +H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 81 N 81
+
Sbjct: 68 D 68
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 499 QTHSDLRPFVCEICGQGYKMKKALLVHVGMHSGIH----PFTCHFCNKSFTQKIGLVKHL 554
+TH+ +P+ C C + ++ K+ L +H + + F C C K+FT++ + +H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 555 N 555
+
Sbjct: 68 D 68
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 55 HSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK----KYQCHLCGKGFIHHTSYKFHQLV 110
H+G P+ C C+K+F QK L H ++ + C CGK F + H
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Query: 111 HSGERNVKCDICG 123
+G V+ + G
Sbjct: 70 CAGPDGVEGENSG 82
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 138 VHTGDRPHECSVCGKRFAKKWNAQVHKKKVH 168
HTG++P+ CS C K F +K +H K+ H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYH 39
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
+KP KC+ CG +SHL RH +HTGEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 118 KCDICGLALTTKSHLNRHMLVHTGDRP 144
KC+ CG T SHL RH +HTG++P
Sbjct: 14 KCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C+ C K FTQ L +H IH G K
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C+ C K FTQ L +H IH G K
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C+ CGK F H+ +H+GEKP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
P+ C+ C K FTQ L +H IHTG
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTG 37
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
P+ C+ C K FTQ L +H IHTG
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTG 37
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC CG A SSHL +H VH+GE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC +CG A SHL +H VH+G+RP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
EKPY+C CGK R + S L H HS RP
Sbjct: 10 EKPYKCQVCGKAFRVS-SHLVQHHSVHSGERP 40
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
+P+ C++CG+ +++ L+ H +HSG P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
+P+ C++CG+ +++ L+ H +HSG P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINP 307
+P+ C++CG+ +++ L+ H +H+G P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINP 393
+P+ C++CG+ +++ L+ H +H+G P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C +CGK F + H VHSGER
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 19/31 (61%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC CG +S L H RVHTGEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSA 454
F+C+ CGKRF + H+ VH+GEKP S+
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC+ CG T S L+ H VHTG++P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
EKP++C CGKR + S+L++H + H+ +P
Sbjct: 10 EKPFKCEECGKRFTQN-SQLHSHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
PF C C K FTQ L H +HTG
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVHTG 37
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
PF C C K FTQ L H +HTG
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVHTG 37
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K ++C CGK F ++ HQ VH+GE+
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
PF C C K FTQ L H +H G K
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
PF C C K FTQ L H +H G K
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVHTGEK 39
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC CG +SHL RH +HTGEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC CG SHL RH L+HTG++P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+CH CGK F ++ HQL+H+GE+
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C CGK F H+++H+GEKP
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC+ CG +SHL H R+HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC+ CG T SHL H +HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C+ C K FTQ L H IH G K
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C+ C K FTQ L H IH G K
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
P+ C+ C K FTQ L H IHTG
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIHTG 37
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
P+ C+ C K FTQ L H IHTG
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIHTG 37
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EK KC CG SSHL+ H RVHTGEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KCD+CG + SHL H VHTG++P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++CD+CGK F H+ VH+GEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 89 YQCHLCGKGFIHHTSYKFHQLVHSGER 115
Y+C +CGK F + + HQ VH+GE+
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP +C+ CG + SS L H R+HTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
F+C CGK F H+ +H+GEKP
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ +C CG + + S L H +HTG++P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
PF C C KSF+ L H IH G K
Sbjct: 12 PFECAECGKSFSISSQLATHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
PF C C KSF+ L H IH G K
Sbjct: 12 PFECAECGKSFSISSQLATHQRIHTGEK 39
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 112 SGERNVKCDICGLALTTKSHLNRHMLVHT---GDRPHECSVCGKRFAKKWNAQVHKKKVH 168
SG ++C+ICG K+ LN H H C CGKRF K + H+ K H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 389 NGINPFTCSFCNKSFTQKVGLQKHLPIHT---GSTRFQCDLCGKRFIHQKSFYIHK 441
+G + C C + QK L H H + RF C+ CGKRF S H+
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 473 TGEKPYQCTTCGKRLRRTVSELNAHIQTHSD----LRPFVCEICGQGYKMKKALLVH 525
+G QC CG R+ S LN H + H++ LR F CE CG+ ++ ++ H
Sbjct: 3 SGSSGLQCEICGFTCRQKAS-LNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAH 57
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C+ CGK FI ++ Y H MVH+GEKP
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC CG + L H VHTGEKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C CGKGFI H +VH+GE+
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEK 39
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC+ CG + L H +VHTG++P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINP 307
+P+ CE CG+G+ ++ L H +H G P
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINP 393
+P+ CE CG+G+ ++ L H +H G P
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
+P+ CE CG+G+ ++ L H +H+G P
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
+P+ CE CG+G+ ++ L H +H+G P
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KCS CG A +HL H R+HTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC CG A +HLN H +HTG RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
EKPY+C+ CGK R + LN H + H+ RP
Sbjct: 10 EKPYKCSECGKAFHRH-THLNEHRRIHTGYRP 40
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C CGK F HT H+ +H+G R
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYR 39
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C +CGK F H++S +H+ +HSG+KP
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C +CGK F H S HQ +HSG++
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP +CS CG A L H R+H+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
+P+ C +CG+ + +++L VH +HSG P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
+P+ C +CG+ + +++L VH +HSG P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINP 307
+P+ C +CG+ + +++L VH +H+G P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINP 393
+P+ C +CG+ + +++L VH +H+G P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 142 DRPHECSVCGKRFAKKWNAQVHKK 165
++P+ECSVCGK F+ + + VH++
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQR 33
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ +C +CG A + + L+ H +H+G +P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
EKPY+C+ CGK S L+ H + HS +P
Sbjct: 10 EKPYECSVCGKAFSHRQS-LSVHQRIHSGKKP 40
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C C K+F+ + L H IH+G K
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C C K+F+ + L H IH+G K
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
P+ CS C K+F+ + L H IH+G
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
P+ CS C K+F+ + L H IH+G
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSG 37
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP CS CG A S S+L H R H+GEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ C CG A ++KS+L HM H+G++P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+ C CGK F + IH HSGEKP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
EKPY C+ CGK + S L H++THS +P
Sbjct: 10 EKPYGCSECGKAF-SSKSYLIIHMRTHSGEKP 40
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
+P+ C CG+ + K L++H+ HSG P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
+P+ C CG+ + K L++H+ HSG P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINP 307
+P+ C CG+ + K L++H+ H+G P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINP 393
+P+ C CG+ + K L++H+ H+G P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C C K+F+ K L+ H+ H+G K
Sbjct: 12 PYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C C K+F+ K L+ H+ H+G K
Sbjct: 12 PYGCSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 449 PIKCSACGLAVLSSSHLKRHFRVHTGEK 476
P+KC CG +S +LKRH R+H+GEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 117 VKCDICGLALTTKSHLNRHMLVHTGDR 143
+KC CG TT +L RH+ +H+G++
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P C C K FT L +HL IH+G K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P C C K FT L +HL IH+G K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTGS 333
P C C K FT L++HL IH+G
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGE 28
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTGS 419
P C C K FT L++HL IH+G
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGE 28
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP C CG A S+ L RH R+HTGEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ CD CG A + L RH +HTG++P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C +C K+F LV+H IH G K
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C +C K+F LV+H IH G K
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+ CD CGK F H+ +H+GEKP
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINP 307
+P+VC+ CG+ + + L+ H +H G P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINP 393
+P+VC+ CG+ + + L+ H +H G P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
+P+VC+ CG+ + + L+ H +H+G P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
+P+VC+ CG+ + + L+ H +H+G P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
P+ C +C K+F L +H IHTG
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTG 37
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
P+ C +C K+F L +H IHTG
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTG 37
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP +C+ CG A S+L H ++HTGEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C CGK F + + + H+ +H+GEKP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ +C CG A T +S+L H +HTG++P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C CGK F ++ HQ +H+GE+
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C C K+FT + L H IH G K
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C C K+FT + L H IH G K
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
P+ C+ C K+FT + L H IHTG
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
P+ C+ C K+FT + L H IHTG
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTG 37
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 445 SGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
SG+KP+ C+ CG SS L +H R+H+GEKP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 56 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
SG P C+ C K+F Q L KH IH+G K
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 530 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
SG P C+ C K+F Q L KH IH+G K
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 417 TGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+G C+ CGK F H+ +HSGEKP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 112 SGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
SG++ + C+ CG S L++H +H+G++P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 303 NGINPFTCSFCNKSFTQKVGLQKHLPIHTG 332
+G P C+ C K+F Q L KH IH+G
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSG 35
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 389 NGINPFTCSFCNKSFTQKVGLQKHLPIHTG 418
+G P C+ C K+F Q L KH IH+G
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSG 35
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
F+CD C K F + + H+M+H+GEKP
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ +CD C + +S LN H ++HTG++P
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
PF C C+KSF Q+ L H IHTG
Sbjct: 12 PFRCDTCDKSFRQRSALNSHRMIHTG 37
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
PF C C+KSF Q+ L H IHTG
Sbjct: 12 PFRCDTCDKSFRQRSALNSHRMIHTG 37
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
PF C C+KSF Q+ L H IH G K
Sbjct: 12 PFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
PF C C+KSF Q+ L H IH G K
Sbjct: 12 PFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP +C C + S L H +HTGEKP
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 473 TGEKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
T EKP++C TC K R+ S LN+H H+ +P
Sbjct: 8 TAEKPFRCDTCDKSFRQ-RSALNSHRMIHTGEKP 40
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K ++C C K F ++ H+++H+GE+
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGE 475
EKP C+ CG A + S+HL +H RVHT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGD 142
E+ C++CG A +HLN+H+ VHT +
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTGST 334
P++C+ C K+F L +HL +HT T
Sbjct: 12 PYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTGST 420
P++C+ C K+F L +HL +HT T
Sbjct: 12 PYSCNVCGKAFVLSAHLNQHLRVHTQET 39
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 445 SGEKPIKCSACGLAVLSSSHLKRHFRVHTGE 475
SGEKP C+ CG A + SH H R+HTGE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 84 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGE 114
+G K Y C CGK FI + + H+ +H+GE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 417 TGSTRFQCDLCGKRFIHQKSFYIHKMVHSGE 447
+G + C CGK FI + F H+ +H+GE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 112 SGERNVKCDICGLALTTKSHLNRHMLVHTGD 142
SGE+ C CG A KSH H +HTG+
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP +CS CG + + S L H R+HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C CGK FI + ++H+ +H+GE P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGE 114
K Y+C CGK FI + HQ +H+GE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGE 38
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ +C CG + KS L+ H +HTG+ P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 142 DRPHECSVCGKRFAKKWNAQVHKK 165
++P+ECS CGK F KK VH++
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQR 33
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTGST 334
P+ CS C KSF +K L H IHTG
Sbjct: 12 PYECSDCGKSFIKKSQLHVHQRIHTGEN 39
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTGST 420
P+ CS C KSF +K L H IHTG
Sbjct: 12 PYECSDCGKSFIKKSQLHVHQRIHTGEN 39
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINP 307
+P+ C CG+ + K L VH +H G NP
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINP 393
+P+ C CG+ + K L VH +H G NP
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++CD+C K F H S H+ VHSGEKP
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C +C K F HH S HQ VHSGE+
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP +C C A + L +H RVH+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ +CD+C A + + L +H VH+G++P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C C K+F+ L +H +H+G K
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C C K+F+ L +H +H+G K
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVHSGEK 39
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 445 SGEKPIKCSACGLAVLSSSHLKRHFRVHTGEK 476
SGEKP C+ CG S S+L H R+HTGEK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 112 SGERNVKCDICGLALTTKSHLNRHMLVHTGDR 143
SGE+ C+ CG ++KS+L H +HTG++
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 56 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
SG P+ C+ C K F+ K L+ H IH G K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 530 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
SG P+ C+ C K F+ K L+ H IH G K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 84 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
+G K Y C+ CGK F + HQ +H+GE+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 417 TGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEK 448
+G + C+ CGK F + +H+ +H+GEK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC+ CG A + S+L H +HTGEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C+ CGK F H++ HQ++H+GE+
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC+ CG A S+L H ++HTG++P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C+ CGK F + H+++H+GEKP
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ +C ICG + T KS L+ H +HTG++P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C +CGK F + ++H+ +H+GEKP
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP +CS CG + S L H ++HTGEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 306 NPFTCSFCNKSFTQKVGLQKHLPIHTG 332
P+ CS C KSFT+K L H IHTG
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTG 37
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 392 NPFTCSFCNKSFTQKVGLQKHLPIHTG 418
P+ CS C KSFT+K L H IHTG
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTG 37
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 142 DRPHECSVCGKRFAKKWNAQVHKKKVHGLDVP 173
++P+ECS+CGK F KK VH +++H + P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVH-QQIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C +CGK F + HQ +H+GE+
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
EKPY+C+ CGK + S+L+ H Q H+ +P
Sbjct: 10 EKPYECSICGKSFTKK-SQLHVHQQIHTGEKP 40
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C C KSFT+K L H IH G K
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C C KSFT+K L H IH G K
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINP 307
+P+ C ICG+ + K L VH +H G P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINP 393
+P+ C ICG+ + K L VH +H G P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
+P+ C ICG+ + K L VH +H+G P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
+P+ C ICG+ + K L VH +H+G P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 118 KCDICGLALTTKSHLNRHMLVHTGDRP 144
+C CG T KSHLN+H +HTG++P
Sbjct: 14 QCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 448 KPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
K +C CG SHL +H R+HTGEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ +C +C A T K+HL +H HTG++P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP +C C A +HL +H + HTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C C+K+FTQK L +H H G K
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C C+K+FTQK L +H H G K
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 306 NPFTCSFCNKSFTQKVGLQKHLPIHTG 332
P+ C C+K+FTQK L +H HTG
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 392 NPFTCSFCNKSFTQKVGLQKHLPIHTG 418
P+ C C+K+FTQK L +H HTG
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C +C K F + H+ H+GEKP
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
E+P C+ CG A S+L +H ++HTGEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
ER C +CG A T +S+L +H +HTG++P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C C K+FT + L+KH IH G K
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C C K+FT + L+KH IH G K
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
P+ C+ C K+FT + L KH IHTG
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
P+ C+ C K+FT + L KH IHTG
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
RP++C +CG+ + + L+ H +H+G P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
RP++C +CG+ + + L+ H +H+G P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINP 307
RP++C +CG+ + + L+ H +H G P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINP 393
RP++C +CG+ + + L+ H +H G P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+ C +CGK F + + H+ +H+GEKP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
+ Y C +CGK F ++ HQ +H+GE+
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 275 SDLRPFVCEICGQGYKMKKALLVHVGMHNGIN 306
S +P+VC CG+ + K L+VH G+H G++
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVS 37
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 361 SDLRPFVCEICGQGYKMKKALLVHVGMHNGIN 392
S +P+VC CG+ + K L+VH G+H G++
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVS 37
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 28 SDLRPFVCEICGQGYKMKKALLVHVGMHSGI 58
S +P+VC CG+ + K L+VH G+H+G+
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 502 SDLRPFVCEICGQGYKMKKALLVHVGMHSGI 532
S +P+VC CG+ + K L+VH G+H+G+
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 56 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNG 85
SG P+ C C K+FT K L+ H IH G
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 530 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNG 559
SG P+ C C K+FT K L+ H IH G
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 112 SGERNVKCDICGLALTTKSHLNRHMLVHTG 141
SGE+ C CG A T KS L H +HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 445 SGEKPIKCSACGLAVLSSSHLKRHFRVHTG 474
SGEKP CS CG A S L H +HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 303 NGINPFTCSFCNKSFTQKVGLQKHLPIHTG 332
+G P+ CS C K+FT K L H IHTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 389 NGINPFTCSFCNKSFTQKVGLQKHLPIHTG 418
+G P+ CS C K+FT K L H IHTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C+ CGK F + S IH+ HSGEKP
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C+ CGK F +S HQ HSGE+
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC+ CG A + S L H H+GEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
EKPY+C CGK R S L H THS +P
Sbjct: 10 EKPYKCNECGKAF-RARSSLAIHQATHSGEKP 40
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
+P+ C CG+ ++ + +L +H HSG P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
+P+ C CG+ ++ + +L +H HSG P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC+ CG A +S L H H+G++P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINP 307
+P+ C CG+ ++ + +L +H H+G P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINP 393
+P+ C CG+ ++ + +L +H H+G P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 28 SDLRPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
S +P+ C CG+ + K L+VH G+H+G+ P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 502 SDLRPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
S +P+ C CG+ + K L+VH G+H+G+ P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 275 SDLRPFVCEICGQGYKMKKALLVHVGMHNGINP 307
S +P+ C CG+ + K L+VH G+H G+ P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 361 SDLRPFVCEICGQGYKMKKALLVHVGMHNGINP 393
S +P+ C CG+ + K L+VH G+H G+ P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 112 SGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
SGE+ C+ CG A T KS L H VHTG +P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 19/33 (57%)
Query: 445 SGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
SGEKP C+ CG A S L H VHTG KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 417 TGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+G + C+ CGK F + +HK VH+G KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 56 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
SG P++C+ C K+FT K L+ H +H G K
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 530 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
SG P++C+ C K+FT K L+ H +H G K
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 473 TGEKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
+GEKPY C CGK S+L H H+ ++P
Sbjct: 6 SGEKPYSCNECGKAFTFK-SQLIVHKGVHTGVKP 38
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 115 RNVKCDICGLALTTKSHLNRHMLVHTGDRPH 145
+ V C+ICG HLNRH L H+G++P+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 417 TGSTRFQ--CDLCGKRFIHQKSFYIHKMVHSGEKP 449
+G TR Q C++CGK F HK+ HSGEKP
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKP 40
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 448 KPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQ 479
K + C CG HL RH H+GEKPY
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 89 YQCHL--CGKGFIHHTSYKFHQLVHSGERNVKC--DICGLALTTKSHLNRHMLVHTG--- 141
Y CH CGK F H K HQ H+ + +C + C + S L RH VH G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 142 DRPHECSVCGK 152
+ CS GK
Sbjct: 62 KKDDSCSFVGK 72
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 427 CGKRFIHQKSFYIHKMVHSGEKPIKC--SACGLAVLSSSHLKRHFRVHTG---EKPYQCT 481
CGK F +H+ H+ + P +C C S LKRH +VH G +K C+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 482 TCGK 485
GK
Sbjct: 69 FVGK 72
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 366 FVC--EICGQGYKMKKALLVHVGMHNGINPFTCSF--CNKSFTQKVGLQKHLPIHTGSTR 421
+VC E CG+ +K L VH H P+ C C+K F+ L++H +H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 422 FQCDLCG 428
+ D C
Sbjct: 62 KKDDSCS 68
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 280 FVC--EICGQGYKMKKALLVHVGMHNGINPFTCSF--CNKSFTQKVGLQKHLPIHTG 332
+VC E CG+ +K L VH H P+ C C+K F+ L++H +H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 33 FVC--EICGQGYKMKKALLVHVGMHSGIHPFTC--HFCNKSFTQKIGLVKHLNIHNG--- 85
+VC E CG+ +K L VH H+ P+ C C+K F+ L +H +H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 86 TKKYQCHLCGKGFI 99
K C GK +
Sbjct: 62 KKDDSCSFVGKTWT 75
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 507 FVC--EICGQGYKMKKALLVHVGMHSGIHPFTC--HFCNKSFTQKIGLVKHLNIHNG 559
+VC E CG+ +K L VH H+ P+ C C+K F+ L +H +H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 89 YQCHL--CGKGFIHHTSYKFHQLVHSGERNVKC--DICGLALTTKSHLNRHMLVHTG--- 141
Y CH CGK F H K HQ H+ + +C + C + S L RH VH G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 142 DRPHECSVCGKRFA 155
+ CS GK +
Sbjct: 62 KKDDSCSFVGKTWT 75
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 366 FVC--EICGQGYKMKKALLVHVGMHNGINPFTCSF--CNKSFTQKVGLQKHLPIHTGSTR 421
+VC E CG+ +K L VH H P+ C C+K F+ L++H +H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 422 FQCDLCG 428
+ D C
Sbjct: 62 KKDDSCS 68
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 427 CGKRFIHQKSFYIHKMVHSGEKPIKC--SACGLAVLSSSHLKRHFRVHTG---EKPYQCT 481
CGK F +H+ H+ + P +C C S LKRH +VH G +K C+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 482 TCGK 485
GK
Sbjct: 69 FVGK 72
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 280 FVC--EICGQGYKMKKALLVHVGMHNGINPFTCSF--CNKSFTQKVGLQKHLPIHTG 332
+VC E CG+ +K L VH H P+ C C+K F+ L++H +H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 33 FVC--EICGQGYKMKKALLVHVGMHSGIHPFTC--HFCNKSFTQKIGLVKHLNIHNG--- 85
+VC E CG+ +K L VH H+ P+ C C+K F+ L +H +H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 86 TKKYQCHLCGKGFI 99
K C GK +
Sbjct: 62 KKDDSCSFVGKTWT 75
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 507 FVC--EICGQGYKMKKALLVHVGMHSGIHPFTC--HFCNKSFTQKIGLVKHLNIHNG 559
+VC E CG+ +K L VH H+ P+ C C+K F+ L +H +H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC CG S +L H +VHTGE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC+ CG +K +L+ H VHTG+RP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C CGKG+ + HQ VH+GER
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
+P+ CE CG+GY K L +H +H+G P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
+P+ CE CG+GY K L +H +H+G P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINP 307
+P+ CE CG+GY K L +H +H G P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINP 393
+P+ CE CG+GY K L +H +H G P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSA 454
++C+ CGK + + + +H+ VH+GE+P S+
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 19/31 (61%)
Query: 445 SGEKPIKCSACGLAVLSSSHLKRHFRVHTGE 475
SGEKP C CG A SS L H RVHTGE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 84 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGE 114
+G K Y C CGK F + H+ VH+GE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 303 NGINPFTCSFCNKSFTQKVGLQKHLPIHTGST 334
+G P+ C C K+FTQ L H +HTG +
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 389 NGINPFTCSFCNKSFTQKVGLQKHLPIHTGST 420
+G P+ C C K+FTQ L H +HTG +
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 56 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNG 85
SG P+ C C K+FTQ L H +H G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 530 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNG 559
SG P+ C C K+FTQ L H +H G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 112 SGERNVKCDICGLALTTKSHLNRHMLVHTGD 142
SGE+ C CG A T S L+ H VHTG+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 417 TGSTRFQCDLCGKRFIHQKSFYIHKMVHSGE 447
+G + C CGK F IH+ VH+GE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP +CS C A + S+L H R HTGEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
F+C C K F + + +H+ H+GEKP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ +C C A TKS+L H HTG++P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
+PF C C + + K L+VH H+G P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
+PF C C + + K L+VH H+G P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC CG ++S H R H+GEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
F+C+ CGK F Y H+ HSGEKP
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K ++C CGKGF ++ HQ HSGE+
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEK 39
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC+ CG T S H H+G++P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
+PF CE CG+G+ H HSG P
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
+PF CE CG+G+ H HSG P
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C CGK FI + + +H+ +H GEKP
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
E+ +CS CG A + S L H R+H GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 89 YQCHLCGKGFIHHTSYKFHQLVHSGER 115
Y+C CGK FI ++ HQ +H GE+
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
ER+ +C CG A KS L+ H +H G++P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
F C CGK F H+ + IH+ +H+GE+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 16/27 (59%)
Query: 306 NPFTCSFCNKSFTQKVGLQKHLPIHTG 332
NPF CS C K FT K L H IHTG
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTG 37
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 16/27 (59%)
Query: 392 NPFTCSFCNKSFTQKVGLQKHLPIHTG 418
NPF CS C K FT K L H IHTG
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTG 37
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 89 YQCHLCGKGFIHHTSYKFHQLVHSGER 115
+ C CGK F H T+ HQ +H+GER
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
E P CS CG ++L H ++HTGE+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 59 HPFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
+PF C C K FT K L+ H IH G +
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 533 HPFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
+PF C C K FT K L+ H IH G +
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
PF+C CG+ + K L++H +H+G P
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
PF+C CG+ + K L++H +H+G P
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINP 307
PF+C CG+ + K L++H +H G P
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINP 393
PF+C CG+ + K L++H +H G P
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP C CG A L +H R+HTGEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
PF C C K+F+ +GL +H IHTG
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIHTG 37
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
PF C C K+F+ +GL +H IHTG
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIHTG 37
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
PF C C K+F+ IGL +H IH G K
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
PF C C K+F+ IGL +H IH G K
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ C CG A + LN+H +HTG++P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC CG + +HL+ H +HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC+ CG +HL H+L+HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
EKPY+C TCG R + V+ L AH+ H+ P
Sbjct: 9 EKPYKCETCGARFVQ-VAHLRAHVLIHTGSGP 39
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C+ CG RF+ H ++H+G P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 306 NPFTCSFCNKSFTQKVGLQKHLPIHTGS 333
P+ C C F Q L+ H+ IHTGS
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGS 37
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 392 NPFTCSFCNKSFTQKVGLQKHLPIHTGS 419
P+ C C F Q L+ H+ IHTGS
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGS 37
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 8 PTCGKKWRTVSELNAHIQTHSDLRPFVCEICG 39
P CGK + L H++ HSD R ++CE G
Sbjct: 44 PACGKSFNFKKHLKEHMKLHSDTRDYICEFSG 75
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 255 PTCGKKWRTVSELNAHIQTHSDLRPFVCEICG 286
P CGK + L H++ HSD R ++CE G
Sbjct: 44 PACGKSFNFKKHLKEHMKLHSDTRDYICEFSG 75
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 417 TGSTRFQCDL--CGKRFIHQKSFYIHKMV-HSGEKPIKCS--ACGLAVLSSSHLKRHFRV 471
+GS+ CD CG+ F +++ HK H +K C ACG + HLK H ++
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 472 HTGEKPYQCTTCG 484
H+ + Y C G
Sbjct: 63 HSDTRDYICEFSG 75
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 8 PTCGKKWRTVSELNAHIQ-THSDLRPFVCE--ICGQGYKMKKALLVHVGMHSGIHPFTCH 64
P CG+ + LN H + H + F C CG+ + KK L H+ +HS + C
Sbjct: 13 PGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 72
Query: 65 FCNKS 69
F S
Sbjct: 73 FSGPS 77
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 255 PTCGKKWRTVSELNAHIQ-THSDLRPFVCE--ICGQGYKMKKALLVHVGMHNGINPFTCS 311
P CG+ + LN H + H + F C CG+ + KK L H+ +H+ + C
Sbjct: 13 PGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 72
Query: 312 FCNKS 316
F S
Sbjct: 73 FSGPS 77
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 34 VCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLN 81
+C +CG+ + K A H+ + F C +C +F GL +H+N
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN 77
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 508 VCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLN 555
+C +CG+ + K A H+ + F C +C +F GL +H+N
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN 77
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 281 VCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHL 327
+C +CG+ + K A H+ + + F C +C +F GL +H+
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 367 VCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHL 413
+C +CG+ + K A H+ + + F C +C +F GL +H+
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
F+C CGK F + + +H+ +H+GEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 115 RNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
++ +C CG A T KS L+ H +HTG++P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 450 IKCSACGLAVLSSSHLKRHFRVHTGEKP 477
+C+ CG A S L H ++HTGEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K ++C CGK F ++ HQ +H+GE+
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 308 FTCSFCNKSFTQKVGLQKHLPIHTG 332
F C+ C K+FT+K L H IHTG
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTG 37
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 394 FTCSFCNKSFTQKVGLQKHLPIHTG 418
F C+ C K+FT+K L H IHTG
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTG 37
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC CG A +S +H R+HTG++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C CGK F ++S HQ +H+G+R
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQR 39
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC CG A S +H +HTG RP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EK KC+ CG +S L +H ++HTGEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC+ CG + S L++H +HTG++P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 421 RFQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
R++C+ CGK F H+ +H+GEKP
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K+Y+C+ CGK F ++ HQ +H+GE+
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP C CG + +S L +H RVH+GEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+ C CGK F H+ VHSGEKP
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C C KSF L+KH +H+G K
Sbjct: 12 PYNCKECGKSFRWASCLLKHQRVHSGEK 39
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C C KSF L+KH +H+G K
Sbjct: 12 PYNCKECGKSFRWASCLLKHQRVHSGEK 39
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++CD+C K F + S +H+ +H+GEKP
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC C + S L H R+HTGEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KCD+C + S L H +HTG++P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C +C K F + +S HQ +H+GE+
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
E+ +CS CG L +S+ +H R+HTGEKP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 423 QCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+C CGK F+ +F H+ +H+GEKP
Sbjct: 14 RCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C CGK F + + +H+ +H+GEKP
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
ER+ +C CG A KS L H +HTG++P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
E+ +CS CG A S L H R+HTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 89 YQCHLCGKGFIHHTSYKFHQLVHSGER 115
Y+C CGK F ++ HQ +H+GE+
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
F+C+ C K F S +H+ +H+GEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
+K KC+ C SS L H R+HTGEKP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 61 FTCHFCNKSFTQKIGLVKHLNIHNGTK 87
F C+ C K+FTQ L H IH G K
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 535 FTCHFCNKSFTQKIGLVKHLNIHNGTK 561
F C+ C K+FTQ L H IH G K
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEK 39
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSA 454
F+C+ CGK F H H+++H+GE P S+
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENPSGPSS 45
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E KC+ CG + +HL++H L+H G+ P
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
E P KC+ CG S+HL +H +H GE P
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 84 NGTKK--YQCHLCGKGFIHHTSYKFHQLVHSGER 115
+GTK+ ++C+ CGK F H HQL+H+GE
Sbjct: 6 SGTKEHPFKCNECGKTFSHSAHLSKHQLIHAGEN 39
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 59 HPFTCHFCNKSFTQKIGLVKHLNIHNG 85
HPF C+ C K+F+ L KH IH G
Sbjct: 11 HPFKCNECGKTFSHSAHLSKHQLIHAG 37
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 533 HPFTCHFCNKSFTQKIGLVKHLNIHNG 559
HPF C+ C K+F+ L KH IH G
Sbjct: 11 HPFKCNECGKTFSHSAHLSKHQLIHAG 37
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y C+ CGK F ++S HQ++H+GE+
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+ C+ CGK F S H+++H+GEKP
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 119 CDICGLALTTKSHLNRHMLVHTGDRP 144
C+ CG A + S L H ++HTG++P
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 448 KPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
KP C+ CG A S L H +HTGEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP KC CG S L H ++HTGEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
+PF C CG+G+ + AL VH +H+G P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
+PF C CG+G+ + AL VH +H+G P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINP 307
+PF C CG+G+ + AL VH +H G P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINP 393
+PF C CG+G+ + AL VH +H G P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ KC CG + +S LN H +HTG++P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
F+C CGK F + + +H +H+GEKP
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
EKP++C CGK R S LN H + H+ +P
Sbjct: 10 EKPFKCVECGKGFSRR-SALNVHHKLHTGEKP 40
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFR-VHTGEKP 477
+KP +C CG A + ++ L RH+R HTGEKP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP C+ CG S L H R HTGEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ C+ CG + KS L+ H HTG++P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
EKPY C CGK + S L+AH +TH+ +P
Sbjct: 10 EKPYGCNECGKTFSQK-SILSAHQRTHTGEKP 40
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+ C+ CGK F + H+ H+GEKP
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C+ C K+F+QK L H H G K
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C+ C K+F+QK L H H G K
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 448 KPIKCSACGLAVLSSSHLKRHFRVHTGEK 476
KP +C C S HLK H R HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINP 307
+P+ C+ CG+ + K +L+VH+ +H G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINP 393
+P+ C+ CG+ + K +L+VH+ +H G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
+P+ C+ CG+ + K +L+VH+ +H+G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
+P+ C+ CG+ + K +L+VH+ +H+G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP +C CG A L H RVHTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGT 86
P+ C C K+F+QK L+ H+ +H G+
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGT 560
P+ C C K+F+QK L+ H+ +H G+
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ +CD CG A + K L H+ VHTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTGS 333
P+ C C K+F+QK L H+ +HTGS
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTGS 419
P+ C C K+F+QK L H+ +HTGS
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++CD CGK F + S +H VH+G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C CGKG+ FHQ VH+GE+
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 16/30 (53%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEK 476
EKP KC CG L H RVHTGEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGE 114
K Y+C CGK FI ++ HQ HSGE
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGE 475
EKP +CS CG A + +S L H R H+GE
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGE 447
++C CGK FI +H+ HSGE
Sbjct: 13 YECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 473 TGEKPYQCTTCGKRLRRTVSELNAHIQTHS 502
T EKPY+C+ CGK R S+L H +THS
Sbjct: 8 TREKPYECSECGKAFIRN-SQLIVHQRTHS 36
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 140 TGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDVP 173
T ++P+ECS CGK F + VH++ G P
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGESGP 41
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEK 476
EKP KC CG A + S+L H +HTGEK
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDR 143
E+ KC CG A T+S+L H ++HTG++
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C+ CGK F ++ HQ++H+GE+
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 119 CDICGLALTTKSHLNRHM-LVHTGDRPHECSV 149
C CG + HLN H+ VHT +RPH+C V
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 476 KPYQCTTCGKRLRRTVSELNAHI-QTHSDLRPFVCEI 511
KPY C +CGK R LN HI Q H+ RP C++
Sbjct: 11 KPYICQSCGKGFSRP-DHLNGHIKQVHTSERPHKCQV 46
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 448 KPIKCSACGLAVLSSSHLKRHFR-VHTGEKPYQC 480
KP C +CG HL H + VHT E+P++C
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 445 SGEKPIKCSACGLAVLSSSHLKRHFRVHTGE 475
SGEKP +C+ CG A S L H R HTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 140 TGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDVP 173
+G++P+EC+ CGK F K +H++ G P
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESGP 39
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 473 TGEKPYQCTTCGKRLRRTVSELNAHIQTHS 502
+GEKPY+CT CGK S+L H +TH+
Sbjct: 6 SGEKPYECTDCGKAF-GLKSQLIIHQRTHT 34
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 84 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSGERN 116
+G K Y+C CGK F + HQ H+GE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESG 38
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
E+ +C+ CG A + +S L H +HTG +P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP +C+ CG A S L H +HTG+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C+ CGK F + S H+ +H+G+KP
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C+ CGK F +S HQ +H+G++
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
+P+ C CG+ + ++ +L H +H+G P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
+P+ C CG+ + ++ +L H +H+G P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINP 307
+P+ C CG+ + ++ +L H +H G P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINP 393
+P+ C CG+ + ++ +L H +H G P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 59 HPFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
+P+ CH C K+F++K L+ H H G K
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEK 39
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 533 HPFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
+P+ CH C K+F++K L+ H H G K
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEK 39
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
E P +C CG A L H R H GEKP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 89 YQCHLCGKGFIHHTSYKFHQLVHSGER 115
Y+CH CGK F HQ H+GE+
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEK 39
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C CGK F + H+ H+GEKP
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 417 TGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+G +QC CGK F + S +H+ +H+G P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 56 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT 86
SG P+ C C KSF+Q+ L H +H G+
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGS 36
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 303 NGINPFTCSFCNKSFTQKVGLQKHLPIHTGS 333
+G P+ C C KSF+Q+ L H +HTGS
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGS 36
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 389 NGINPFTCSFCNKSFTQKVGLQKHLPIHTGS 419
+G P+ C C KSF+Q+ L H +HTGS
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGS 36
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 530 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT 560
SG P+ C C KSF+Q+ L H +H G+
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGS 36
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 445 SGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
SGEKP +C CG + L H R+HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 275 SDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFT 309
S +P+ C+ CG+ + + +L VH +H G P +
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 361 SDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFT 395
S +P+ C+ CG+ + + +L VH +H G P +
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 84 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSG 113
+G K YQC CGK F S H+ +H+G
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 28 SDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFT 62
S +P+ C+ CG+ + + +L VH +H+G P +
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 502 SDLRPFVCEICGQGYKMKKALLVHVGMHSGIHPFT 536
S +P+ C+ CG+ + + +L VH +H+G P +
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 473 TGEKPYQCTTCGKRLRRTVSELNAHIQTHSDLRP 506
+GEKPYQC CGK + S L H + H+ P
Sbjct: 6 SGEKPYQCKECGKSFSQRGS-LAVHERLHTGSGP 38
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 140 TGDRPHECSVCGKRFAKKWNAQVHKK 165
+G++P++C CGK F+++ + VH++
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHER 31
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEK 476
EKP KCS CG + S L+ H + HTGE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C CGK F + + HQ H+GER
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDR 143
E+ KC CG + T KS L H HTG+R
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
P+ CS C KSFT K L+ H HTG
Sbjct: 12 PYKCSDCGKSFTWKSRLRIHQKCHTG 37
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
P+ CS C KSFT K L+ H HTG
Sbjct: 12 PYKCSDCGKSFTWKSRLRIHQKCHTG 37
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 308 FTCSFCNKSFTQKVGLQKHLPIHT 331
FTC +CNK F K LQ HL IHT
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHT 33
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 394 FTCSFCNKSFTQKVGLQKHLPIHT 417
FTC +CNK F K LQ HL IHT
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHT 33
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 61 FTCHFCNKSFTQKIGLVKHLNIHNGTK 87
FTC +CNK F K L HL IH K
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 535 FTCHFCNKSFTQKIGLVKHLNIHNGTK 561
FTC +CNK F K L HL IH K
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEK 476
E+P KC+ CG SHL H R+H+ EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 56 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT 86
SG PF C C +FT K +HL +H T
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 530 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT 560
SG PF C C +FT K +HL +H T
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 303 NGINPFTCSFCNKSFTQKVGLQKHLPIHTGS 333
+G PF C C +FT K +HL +HT +
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 389 NGINPFTCSFCNKSFTQKVGLQKHLPIHTGS 419
+G PF C C +FT K +HL +HT +
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 112 SGERNVKCDICGLALTTKSHLNRHMLVHT 140
SG+R C IC A TTK++ RH+ VHT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
P+ CS C K+FT+K GL H HTG
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
P+ CS C K+FT+K GL H HTG
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEK 476
EKP KCS CG A S L H + HTGE+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDR 143
E+ KC CG A T KS L+ H HTG+R
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 475 EKPYQCTTCGKRLRRTVSELNAHIQTHSDLR 505
EKPY+C+ CGK R S L+ H Q+H+ R
Sbjct: 10 EKPYKCSDCGKAFTRK-SGLHIHQQSHTGER 39
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C CGK F + HQ H+GER
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEK 448
++C CGK F + +IH+ H+GE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C C K+FT+K GL H H G +
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C C K+FT+K GL H H G +
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 30 LRPFVCEICGQGYKMKKALLVHVGMHSG 57
++P+VC CG+ ++ K L++H H+G
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 504 LRPFVCEICGQGYKMKKALLVHVGMHSG 531
++P+VC CG+ ++ K L++H H+G
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 277 LRPFVCEICGQGYKMKKALLVHVGMHNG 304
++P+VC CG+ ++ K L++H H G
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 363 LRPFVCEICGQGYKMKKALLVHVGMHNG 390
++P+VC CG+ ++ K L++H H G
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 448 KPIKCSACGLAVLSSSHLKRHFRVHTGE 475
KP C+ CG A S S+L H R HTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K Y+C CGKG+ + HQ VH GE+
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEK 476
EKP KC CG +L H RVH GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 445 SGEKPIKCSACGLAVLSSSHLKRHFRVHTGE 475
SGE P +CS CG A L H R H GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 473 TGEKPYQCTTCGKRLRRTVSELNAHIQTHS 502
+GE PY+C+ CGK R +L +H +TH+
Sbjct: 6 SGENPYECSECGKAFNRK-DQLISHQRTHA 34
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 303 NGINPFTCSFCNKSFTQKVGLQKHLPIHTGST 334
+G NP+ CS C K+F +K L H H G +
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 389 NGINPFTCSFCNKSFTQKVGLQKHLPIHTGST 420
+G NP+ CS C K+F +K L H H G +
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 140 TGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDVPGT 175
+G+ P+ECS CGK F +K H++ G P +
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 28.5 bits (62), Expect = 9.5, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 56 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNG 85
SG +P+ C C K+F +K L+ H H G
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 28.5 bits (62), Expect = 9.5, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 530 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNG 559
SG +P+ C C K+F +K L+ H H G
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAG 35
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 108 QLVHSGERNVKCDICGLALTTKSHLNRHMLV--HTGDRPHECSVCGKRFAKKWNAQVHKK 165
+ GE +C +C T S+ RH + + + C C K F +K N H K
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 166 KVHGL 170
+H +
Sbjct: 62 IIHKI 66
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 470 RVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHSD-LRPFVCEICGQGYKMKKALLVHV 526
R H+GEKPY+C C R ++ + +Q H++ + F C C K L VH+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 138 VHTGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDV 172
H+G++P+EC +C RF + ++H + H +V
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENV 43
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 110 VHSGERNVKCDICGLALTTKSHLNRHMLV-HTGD-RPHECSVCGKRFAKKWNAQVHKKKV 167
HSGE+ +C IC T + H+L HT + C C A+K + VH +K
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ 68
Query: 168 HGLDVPGT 175
H P +
Sbjct: 69 HSYSGPSS 76
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP +C CG + +S L H R+HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINP 307
+P C CG+ + L+VH +H G NP
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINP 393
+P C CG+ + L+VH +H G NP
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 423 QCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+C CGK F +H+ +H+GE P
Sbjct: 14 ECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2P4S|A Chain A, Structure Of Purine Nucleoside Phosphorylase From
Anopheles Gambiae In Complex With Dadme-immh
pdb|2P4S|B Chain B, Structure Of Purine Nucleoside Phosphorylase From
Anopheles Gambiae In Complex With Dadme-immh
pdb|2P4S|C Chain C, Structure Of Purine Nucleoside Phosphorylase From
Anopheles Gambiae In Complex With Dadme-immh
Length = 373
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 341 SHLNYVWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKALLVHV 385
H+ Y + T+ E+ ++ ++LRP V ICG G L V
Sbjct: 86 EHVGYTYDTLQEIATYLLERTELRPKVGIICGSGLGTLAEQLTDV 130
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 445 SGEKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
SGEKP CS C A S S+L H + H EKP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 473 TGEKPYQCTTCGKRLRRTVSELNAHIQTH 501
+GEKPY C CG R +R ++ H+++H
Sbjct: 6 SGEKPYSCPVCGLRFKRK-DRMSYHVRSH 33
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 445 SGEKPIKCSACGLAVLSSSHLKRHFRVHTG 474
SGEKP C CGL + H R H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 445 SGEKPIKCSACGLAVLSSSHLKRHFRVHTGE 475
SG+KP C+ CG A S L H R+HTGE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 28 SDLRPFVCEICGQGYKMKKALLVHVGMHSG 57
S +P+VC CG+ + +K L++H +H+G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 502 SDLRPFVCEICGQGYKMKKALLVHVGMHSG 531
S +P+VC CG+ + +K L++H +H+G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 275 SDLRPFVCEICGQGYKMKKALLVHVGMHNG 304
S +P+VC CG+ + +K L++H +H G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 361 SDLRPFVCEICGQGYKMKKALLVHVGMHNG 390
S +P+VC CG+ + +K L++H +H G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 56 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNG 85
SG P+ C+ C K+F K L+ H IH G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 530 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNG 559
SG P+ C+ C K+F K L+ H IH G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP C+ CG A S+L +H ++HT +KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P+ C C K+FT + L+KH IH K
Sbjct: 12 PYICAECGKAFTIRSNLIKHQKIHTKQK 39
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P+ C C K+FT + L+KH IH K
Sbjct: 12 PYICAECGKAFTIRSNLIKHQKIHTKQK 39
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 448 KPIKCSACGLAVLSSSHLKRHFRVHTGEK 476
KP +C CG A +S L H R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
P C C K+FTQ L+ H+ H G K
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
P C C K+FTQ L+ H+ H G K
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEK 476
+KP +C+ CG + + +L H R+HTGEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
PF C C KSF K LV H IH G K
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 534 PFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
PF C C KSF K LV H IH G K
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 307 PFTCSFCNKSFTQKVGLQKHLPIHTG 332
PF C+ C KSF K L H IHTG
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 393 PFTCSFCNKSFTQKVGLQKHLPIHTG 418
PF C+ C KSF K L H IHTG
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTG 37
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 452 CSACGLAVLSSSHLKRHFRVHTGEK 476
C C A HLKRH+R HT EK
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 305 INPFTCSFCNKSFTQKVGLQKHLPIHTGS 333
+ P+ C C + F LQ+H+ IHTG
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 391 INPFTCSFCNKSFTQKVGLQKHLPIHTGS 419
+ P+ C C + F LQ+H+ IHTG
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 448 KPIKCSACGLAVLSSSHLKRHFRVHTGEK 476
KP C C L+RH R+HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 445 SGEKPIKCSACGLAVLSSSHLKRHFRVHTGEK 476
S KP KCS C A S S+LK H H+ EK
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 448 KPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
KP +CS CG + S L +H+ HT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 143 RPHECSVCGKRFAKKWNAQVHKK 165
RP+ CSVCGKRF+ K + H +
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYR 24
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 305 INPFTCSFCNKSFTQKVGLQKHLPIHTG 332
+ P++CS C K F+ K ++ H +HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 391 INPFTCSFCNKSFTQKVGLQKHLPIHTG 418
+ P++CS C K F+ K ++ H +HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 30 LRPFVCEICGQGYKMKKALLVHVGMHSG 57
+RP+ C +CG+ + +K + H +H+G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 504 LRPFVCEICGQGYKMKKALLVHVGMHSG 531
+RP+ C +CG+ + +K + H +H+G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 277 LRPFVCEICGQGYKMKKALLVHVGMHNG 304
+RP+ C +CG+ + +K + H +H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 363 LRPFVCEICGQGYKMKKALLVHVGMHNG 390
+RP+ C +CG+ + +K + H +H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
++P +C CG A + S L H R HTGEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINP 307
RP+ C CG+ +K K +L+ H H G P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINP 393
RP+ C CG+ +K K +L+ H H G P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
RP+ C CG+ +K K +L+ H H+G P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
RP+ C CG+ +K K +L+ H H+G P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
++C CGK F + S H+ H+GEKP
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 114 ERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
+R +C CG A TKS L H HTG++P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEK 476
+KP +C C + HL +H RVHTGE+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EKP C CG LK H R+HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 278 RPFVCEICGQGYKMKKALLVHVGMHNGINP 307
+P+ CEICG ++ + L H+ +H G P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 364 RPFVCEICGQGYKMKKALLVHVGMHNGINP 393
+P+ CEICG ++ + L H+ +H G P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+ C++CG RF H ++ H +H+G P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 31 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
+P+ CEICG ++ + L H+ +H+G P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 505 RPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
+P+ CEICG ++ + L H+ +H+G P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 417 TGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+G ++C CGK F + S +H+ +H+G P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 56 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT 86
SG + C C KSF QK L H IH G+
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGS 36
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 530 SGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT 560
SG + C C KSF QK L H IH G+
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGS 36
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 303 NGINPFTCSFCNKSFTQKVGLQKHLPIHTGS 333
+G + C C KSF QK L H IHTGS
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGS 36
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 389 NGINPFTCSFCNKSFTQKVGLQKHLPIHTGS 419
+G + C C KSF QK L H IHTGS
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGS 36
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 112 SGERNVKCDICGLALTTKSHLNRHMLVHTGDRP 144
SG+R +C CG + K L H +HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 275 SDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFT 309
S R + C+ CG+ ++ K +L +H +H G P +
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 361 SDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFT 395
S R + C+ CG+ ++ K +L +H +H G P +
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 84 NGTKKYQCHLCGKGFIHHTSYKFHQLVHSG 113
+G + Y+C CGK F S H+ +H+G
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTG 35
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 424 CDLCGKRFIHQKSFYIHKMVHSGEK 448
CD CGK F + + IH+ VH GEK
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEK 39
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGER 115
K + C CGK F + ++ + HQ VH GE+
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|1TXZ|A Chain A, Crystal Structure Of Yeast Ymx7, An
Adp-ribose-1''-monophosphatase, Complexed With
Adp-ribose
pdb|1TY8|A Chain A, Crystal Structure Of Yeast Ymx7, An
Adp-Ribose-1''-Monophosphatase, Complexed With Adp
Length = 284
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 154 FAKKWNAQVHK-KKVHGLDVPGTTHRVMPVPPIGGGXXXXXXXXXXXXXXVPSIKIKFLS 212
F WNA +H K + GL +PG VPPI S ++K +
Sbjct: 171 FNAMWNALMHSPKDIDGLIIPGLCTGYAGVPPIISCKSMAFALRLYMAGDHISKELK--N 228
Query: 213 ALIYFFVSWTFWPLVSQEC 231
LI +++ + F P + C
Sbjct: 229 VLIMYYLQYPFEPFFPESC 247
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 445 SGEKPIKCSACGLAVLSSSHLKRHFRVHTGEK 476
S KP KC C A ++L H R HTGEK
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGE 475
EKP +C+ C A + S+L H R HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 305 INPFTCSFCNKSFTQKVGLQKHLPIHT 331
+NP+ CS C KSF+ K+ L H +HT
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHT 36
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 391 INPFTCSFCNKSFTQKVGLQKHLPIHT 417
+NP+ CS C KSF+ K+ L H +HT
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHT 36
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 58 IHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 87
+ P+ C +C +SF+ ++HL H+ K
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 532 IHPFTCHFCNKSFTQKIGLVKHLNIHNGTK 561
+ P+ C +C +SF+ ++HL H+ K
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
>pdb|2LVH|A Chain A, Solution Structure Of The Zinc Finger Afv1p06 Protein From
The Hyperthermophilic Archaeal Virus Afv1
Length = 59
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 271 IQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFT 318
I+ S R + C CG ++ KK L+ H+ +NP + + +SF+
Sbjct: 2 IEVSSMERVYQCLRCGLTFRTKKQLIRHLVNTEKVNPLSIDYYYQSFS 49
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 357 IQTHSDLRPFVCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFT 404
I+ S R + C CG ++ KK L+ H+ +NP + + +SF+
Sbjct: 2 IEVSSMERVYQCLRCGLTFRTKKQLIRHLVNTEKVNPLSIDYYYQSFS 49
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 277 LRPFVCEICGQGYKMKKALLVHVGMHNGINP 307
++P+ C C + + +K L+VH H G+ P
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 363 LRPFVCEICGQGYKMKKALLVHVGMHNGINP 393
++P+ C C + + +K L+VH H G+ P
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 30 LRPFVCEICGQGYKMKKALLVHVGMHSGIHP 60
++P+ C C + + +K L+VH H+G+ P
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 504 LRPFVCEICGQGYKMKKALLVHVGMHSGIHP 534
++P+ C C + + +K L+VH H+G+ P
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEKP 477
EK KC C + +S L+ H VH GEKP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 306 NPFTC--SFCNKSFTQKVGLQKHLPIHTGS 333
PF C S+C K FT+ LQ+H HTG
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 392 NPFTC--SFCNKSFTQKVGLQKHLPIHTGS 419
PF C S+C K FT+ LQ+H HTG
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 448 KPIKC--SACGLAVLSSSHLKRHFRVHTGEK 476
+P C S CG S L+RH R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 378 KKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCG 428
K AL +H +H PF C++C+ Q L KH+ +F D+ G
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM------KKFHGDMSG 66
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 102 TSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGD 142
+ + H+ +H +R KC+ C S+L++HM GD
Sbjct: 23 AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 129 KSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQVHKKKVHGLDVPGTT 176
K+ L H +H DRP +C+ C + N H KK HG D+ G +
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG-DMSGPS 68
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 45 KKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT 86
K AL +H +H PF C++C+ Q L KH+ +G
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 519 KKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT 560
K AL +H +H PF C++C+ Q L KH+ +G
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 292 KKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHL 327
K AL +H +H PF C++C+ Q L KH+
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 447 EKPIKCS--ACGLAVLSSSHLKRHFRVHTGEKP 477
EKP C+ CG S L RH R H+G KP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 475 EKPYQCT--TCGKRLRRTVSELNAHIQTHSDLRP 506
EKP+ CT CG R R+ EL+ H ++HS ++P
Sbjct: 10 EKPFACTWPGCGWRFSRS-DELSRHRRSHSGVKP 42
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVHSGEKP 449
+ C CGK F H+ +HSGEKP
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 112 SGERNVKCDICGLALTTKSHLNRHMLVHTGD 142
SGE+ +C+ CG A + KS L H +HTG+
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 447 EKPIKCSACGLAVLSSSHLKRHFRVHTGEK 476
EKP KC+ CG A S L H R H +K
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2YSO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
656- 688) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 87 KKYQCHLCGKGFIHHTSYKFHQLVHSGERN 116
K +QC CG+ F + S HQ++H G++N
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 5 HECPTCGKKWRTVSELNAHIQTH 27
H+CP C KK+ V L AH++ H
Sbjct: 3 HKCPHCDKKFNQVGNLKAHLKIH 25
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 252 HECPTCGKKWRTVSELNAHIQTH 274
H+CP C KK+ V L AH++ H
Sbjct: 3 HKCPHCDKKFNQVGNLKAHLKIH 25
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,197,072
Number of Sequences: 62578
Number of extensions: 683532
Number of successful extensions: 4877
Number of sequences better than 100.0: 185
Number of HSP's better than 100.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1910
Number of HSP's gapped (non-prelim): 2592
length of query: 566
length of database: 14,973,337
effective HSP length: 104
effective length of query: 462
effective length of database: 8,465,225
effective search space: 3910933950
effective search space used: 3910933950
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)