RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18241
(566 letters)
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 37.4 bits (87), Expect = 4e-04
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 464 HLKRHFRVHTGEKPYQCTTCGKR 486
+L+RH R HTGEKPY+C CGK
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKS 23
Score = 36.6 bits (85), Expect = 8e-04
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 131 HLNRHMLVHTGDRPHECSVCGKRFA 155
+L RHM HTG++P++C VCGK F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 28.5 bits (64), Expect = 0.54
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 47 ALLVHVGMHSGIHPFTCHFCNKSFTQ 72
L H+ H+G P+ C C KSF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 28.5 bits (64), Expect = 0.54
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 521 ALLVHVGMHSGIHPFTCHFCNKSFTQ 546
L H+ H+G P+ C C KSF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 28.5 bits (64), Expect = 0.55
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 76 LVKHLNIHNGTKKYQCHLCGKGF 98
L +H+ H G K Y+C +CGK F
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSF 24
Score = 28.1 bits (63), Expect = 0.89
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 294 ALLVHVGMHNGINPFTCSFCNKSFTQ 319
L H+ H G P+ C C KSF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 28.1 bits (63), Expect = 0.89
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 380 ALLVHVGMHNGINPFTCSFCNKSFTQ 405
L H+ H G P+ C C KSF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 27.0 bits (60), Expect = 1.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 409 LQKHLPIHTGSTRFQCDLCGKRF 431
L++H+ HTG ++C +CGK F
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSF 24
Score = 26.6 bits (59), Expect = 3.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 19 ELNAHIQTHSDLRPFVCEICGQGYK 43
L H++TH+ +P+ C +CG+ +
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 26.6 bits (59), Expect = 3.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 266 ELNAHIQTHSDLRPFVCEICGQGYK 290
L H++TH+ +P+ C +CG+ +
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 26.6 bits (59), Expect = 3.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 352 ELNAHIQTHSDLRPFVCEICGQGYK 376
L H++TH+ +P+ C +CG+ +
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 26.6 bits (59), Expect = 3.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 493 ELNAHIQTHSDLRPFVCEICGQGYK 517
L H++TH+ +P+ C +CG+ +
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 38.5 bits (89), Expect = 0.008
Identities = 34/178 (19%), Positives = 55/178 (30%), Gaps = 16/178 (8%)
Query: 306 NPFTCSFCNKSFTQKVGLQKHLP--IHTGSTRFQWEQSHLNYVWR--TVSELNAHIQTHS 361
P CN SF++ L +HL H+G + + + L HI H+
Sbjct: 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT 347
Query: 362 DLRPFVCEICGQGYKMKKAL-------LVHVGMHNGINPFTC--SFCNKSFTQKVGLQKH 412
+ P ++ K L L + C ++F + L H
Sbjct: 348 SISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLH 407
Query: 413 LPIHTGSTR--FQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRH 468
+ H + C K F + HK +H+ P+ CS L H
Sbjct: 408 IITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFR-RDLDLSNH 464
Score = 35.8 bits (82), Expect = 0.051
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 448 KPIKCSACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRR-TVSELNAHIQTHS 502
+P C C + HL RH R HTGEKP QC+ G EL+ H++TH
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHH 87
Score = 35.1 bits (80), Expect = 0.094
Identities = 59/426 (13%), Positives = 126/426 (29%), Gaps = 31/426 (7%)
Query: 115 RNVKCDICGLALTTKSHLNRHMLVHTGDRPHECSVCGKRFAKKWNAQ--VHKKKVHGLDV 172
R C C + + HL RH+ HTG++P +CS G + + H + H
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPS 91
Query: 173 PGTTHRVMPVPPIGGGEKEEDVATTDTEDDVPSIKIKFLSALIYFFVSWTFWPLVSQECF 232
+ + ++ ++++ S + + +
Sbjct: 92 DLNSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSH-SLPPSSRDPQLPDLLSISNLRNNP 150
Query: 233 LTIGFFFFLTG-ERACMPLIHECPTCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKM 291
L + + + + K + L + +
Sbjct: 151 LPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYS 210
Query: 292 KKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVS 351
+ + N + + ++ + + Q + + + +S + + S
Sbjct: 211 IPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASS 270
Query: 352 ELNAHIQTHS-----DLRPFVCEICGQGYKMKKAL------LVHVGMHNGINPFTC--SF 398
+ ++ ++ S P + C + L + H G PF+C S
Sbjct: 271 QSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESL--KPFSCPYSL 328
Query: 399 CNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSF------YIHKMVHSGEKPIKC 452
C K F++ L++H+ +HT + + L + +
Sbjct: 329 CGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSE 388
Query: 453 SA---CGLAVLSSSHLKRHFRVHTGEKPYQC--TTCGKRLRRTVSELNAHIQTHSDLRPF 507
+ C S+L H H +PY C C K R L H + H++ P
Sbjct: 389 TLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRH-YNLIPHKKIHTNHAPL 447
Query: 508 VCEICG 513
+C I
Sbjct: 448 LCSILK 453
Score = 34.3 bits (78), Expect = 0.18
Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 13/148 (8%)
Query: 18 SELNAHIQTHSDLRPFVC--EICGQGYKMKKALLVHVGMHSGIHPFTCHF--CNKSFTQK 73
L + + L+PF C +CG+ + AL H+ +H+ I P + F+
Sbjct: 307 RHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPL 366
Query: 74 IG------LVKHLNIHNGTKKYQCHLCGKGFI---HHTSYKFHQLVHSGERNVKCDICGL 124
+ L ++ ++ N K + S + N K C
Sbjct: 367 LNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSK 426
Query: 125 ALTTKSHLNRHMLVHTGDRPHECSVCGK 152
+ +L H +HT P CS+
Sbjct: 427 SFNRHYNLIPHKKIHTNHAPLLCSILKS 454
Score = 33.5 bits (76), Expect = 0.33
Identities = 34/191 (17%), Positives = 50/191 (26%), Gaps = 20/191 (10%)
Query: 388 HNGINPFTCSFCNKSFTQKVGLQKHLPIHTG-STRFQCDLCGKRFIHQKSFYIHK--MVH 444
+ S S + G S + C F H + H
Sbjct: 255 SSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNH 314
Query: 445 SGE--KPIKC--SACGLAVLSSSHLKRHFRVHTGEKPYQCTTCG---KRLRRTVSELNAH 497
SGE KP C S CG + LKRH +HT P + K +E
Sbjct: 315 SGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQS 374
Query: 498 IQTHSDL---RPFVC------EICGQGYKMKKALLVHVGM-HSGIHPFTCHFCNKSFTQK 547
+Q + DL + + + ++ H+ C
Sbjct: 375 LQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNL 434
Query: 548 IGLVKHLNIHN 558
I K H
Sbjct: 435 IPHKKIHTNHA 445
Score = 31.2 bits (70), Expect = 1.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 60 PFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQC 91
P +C C SF++ L +H+ H G K QC
Sbjct: 33 PDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQC 64
Score = 30.0 bits (67), Expect = 3.7
Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 13/132 (9%)
Query: 5 HECP--TCGKKWRTVSELNAHIQTHSDLRPFVCEICGQGYKMKKAL----LVHVGMHSGI 58
CP CGK + L HI H+ + P ++ K L + + +
Sbjct: 322 FSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDL 381
Query: 59 H---PFTC--HFCNKSFTQKIGLVKHLNIH--NGTKKYQCHLCGKGFIHHTSYKFHQLVH 111
+ C ++F + L H+ H + C K F H + H+ +H
Sbjct: 382 KNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIH 441
Query: 112 SGERNVKCDICG 123
+ + C I
Sbjct: 442 TNHAPLLCSILK 453
Score = 28.9 bits (64), Expect = 7.4
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 86 TKKYQCHLCGKGFIHHTSYKFHQ--LVHSGE--RNVKCDI--CGLALTTKSHLNRHMLVH 139
+ + C F + H + HSGE + C CG + L RH+L+H
Sbjct: 287 SLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLH 346
Query: 140 TGDRPHEC 147
T P +
Sbjct: 347 TSISPAKE 354
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 34.1 bits (78), Expect = 0.054
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 382 LVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIH 440
L + ++P+ C C F+ V L++H+ S C +CGK F + S H
Sbjct: 62 LYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSKV--CPVCGKEFRNTDSTLDH 118
Score = 30.6 bits (69), Expect = 0.78
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 49 LVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGKGF 98
L + + P+ C C F+ + L +H+ +K C +CGK F
Sbjct: 62 LYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSKV--CPVCGKEF 109
Score = 27.5 bits (61), Expect = 9.1
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 32 PFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHL 80
P+VC +C + +L H+ H C C K F + H+
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTE--HSKVCPVCGKEFRNTDSTLDHV 119
Score = 27.5 bits (61), Expect = 9.1
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 506 PFVCEICGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHL 554
P+VC +C + +L H+ H C C K F + H+
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTE--HSKVCPVCGKEFRNTDSTLDHV 119
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 33.5 bits (76), Expect = 0.26
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 13/85 (15%)
Query: 304 GINPFTCSF--CNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHS 361
P+ C CNK + + GL+ H+ H N +
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHM-----------LHGHQNQKLHENPSPEKMNIFSA 394
Query: 362 DLRPFVCEICGQGYKMKKALLVHVG 386
+P+ CE+C + YK L H
Sbjct: 395 KDKPYRCEVCDKRYKNLNGLKYHRK 419
Score = 32.8 bits (74), Expect = 0.52
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 446 GEKPIKCS--ACGLAVLSSSHLKRHFRVHTGEKPYQCTTCGKRLRRTVSELNAHIQTHSD 503
KP KC C + + LK H +H ++L S +I + D
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYH-MLHG--------HQNQKLHENPSPEKMNIFSAKD 396
Query: 504 LRPFVCEICGQGYKMKKALLVHVGMHS 530
+P+ CE+C + YK L H HS
Sbjct: 397 -KPYRCEVCDKRYKNLNGLKYHRK-HS 421
Score = 31.2 bits (70), Expect = 1.4
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 29 DLRPFVCEI--CGQGYKMKKALLVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLNIHNGT 86
D +P+ C + C + YK + L H M G N+ + K
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYH--MLHG-------HQNQKLHENPSPEKMNIFSAKD 396
Query: 87 KKYQCHLCGKGFIHHTSYKFH 107
K Y+C +C K + + K+H
Sbjct: 397 KPYRCEVCDKRYKNLNGLKYH 417
Score = 29.7 bits (66), Expect = 4.5
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 85 GTKKYQCHL--CGKGFIHHTSYKFHQLVHSGERNVKCDICGLALTTKSHLNRHMLVHTGD 142
K Y+C + C K + + K+H L G +N K L + + D
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHML--HGHQNQK-------LHENPSPEKMNIFSAKD 396
Query: 143 RPHECSVCGKRFAKKWNAQVHKKKVH 168
+P+ C VC KR+ + H+K H
Sbjct: 397 KPYRCEVCDKRYKNLNGLKYHRKHSH 422
>gnl|CDD|224119 COG1198, PriA, Primosomal protein N' (replication factor Y) -
superfamily II helicase [DNA replication, recombination,
and repair].
Length = 730
Score = 33.1 bits (76), Expect = 0.42
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 10/38 (26%)
Query: 59 HPFTCHFCNKSFTQKIGLVKHLNIHNGTKKYQCHLCGK 96
+ C C+ T +H T + +CH CG
Sbjct: 443 YIAECPNCDSPLT----------LHKATGQLRCHYCGY 470
Score = 28.8 bits (65), Expect = 9.6
Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 30/73 (41%)
Query: 394 FTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCS 453
C C+ T +H + + +C CG + P C
Sbjct: 445 AECPNCDSPLT----------LHKATGQLRCHYCG---------------YQEPIPQSCP 479
Query: 454 ACGLAVLSSSHLK 466
CG S HL+
Sbjct: 480 ECG-----SEHLR 487
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 32.2 bits (74), Expect = 0.71
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 34/118 (28%)
Query: 417 TGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACGLAVLSSSHLKRHFRVHTGEK 476
G +++C+ C K+ K IH+ A + + HLKR F G K
Sbjct: 178 DGENKYKCERCKKKVKASKQLTIHR------------APNVLTI---HLKR-FSNFRGGK 221
Query: 477 PYQCTTCGKRLRRTVSELNAHIQTHSDLRPFVCEICGQGYKMK-KALLVHVGM--HSG 531
+ + + L DL P++ + K K A+LVH G HSG
Sbjct: 222 INKQISFPETL---------------DLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSG 264
>gnl|CDD|234754 PRK00418, PRK00418, DNA gyrase inhibitor; Reviewed.
Length = 62
Score = 29.2 bits (66), Expect = 0.71
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 12/40 (30%)
Query: 1 MPLIHECPTCGKK--WRTVSELNAHIQTHSDLRPFVCEIC 38
+ CPTCGK W E++ RPF + C
Sbjct: 3 ETITVNCPTCGKPVEW---GEISPF-------RPFCSKRC 32
Score = 29.2 bits (66), Expect = 0.71
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 12/40 (30%)
Query: 248 MPLIHECPTCGKK--WRTVSELNAHIQTHSDLRPFVCEIC 285
+ CPTCGK W E++ RPF + C
Sbjct: 3 ETITVNCPTCGKPVEW---GEISPF-------RPFCSKRC 32
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 27.7 bits (62), Expect = 0.99
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 118 KCDICGLALTTKSHLNRHMLVH 139
KC CG + + KS+L RH+ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 26.9 bits (60), Expect = 2.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 62 TCHFCNKSFTQKIGLVKHLNIH 83
C C KSF++K L +HL H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 26.9 bits (60), Expect = 2.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 536 TCHFCNKSFTQKIGLVKHLNIH 557
C C KSF++K L +HL H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 25.8 bits (57), Expect = 4.9
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 423 QCDLCGKRFIHQKSFYIHKMVH 444
+C CGK F + + H H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 25.4 bits (56), Expect = 7.5
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 90 QCHLCGKGFIHHTSYKFHQLVH 111
+C CGK F ++ K H H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|172627 PRK14138, PRK14138, NAD-dependent deacetylase; Provisional.
Length = 244
Score = 30.9 bits (70), Expect = 1.4
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 405 QKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACG 456
QK G +K + +H + C CGKR+ + + + + + P +C C
Sbjct: 103 QKAGSKKVIELHGNVEEYYCVRCGKRYTVED---VIEKLEKSDVP-RCDDCS 150
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 27.4 bits (61), Expect = 1.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 61 FTCHFCNKSFTQKIGLVKHLNIH 83
+ C C K F K L +H+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.4 bits (61), Expect = 1.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 535 FTCHFCNKSFTQKIGLVKHLNIH 557
+ C C K F K L +H+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 26.7 bits (59), Expect = 2.6
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 118 KCDICGLALTTKSHLNRHMLVH 139
+C CG +KS L HM H
Sbjct: 2 RCPECGKVFKSKSALREHMRTH 23
Score = 26.3 bits (58), Expect = 3.8
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 308 FTCSFCNKSFTQKVGLQKHLPIH 330
+ C C K F K L++H+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 26.3 bits (58), Expect = 3.8
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 394 FTCSFCNKSFTQKVGLQKHLPIH 416
+ C C K F K L++H+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 4.4
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 422 FQCDLCGKRFIHQKSFYIHKMVH 444
++C CGK F + + H H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.1 bits (55), Expect = 9.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 89 YQCHLCGKGFIHHTSYKFHQLVH 111
Y+C CGK F ++ + H H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase
domain and an AraC-type DNA-binding HTH domain
[Transcription].
Length = 328
Score = 29.9 bits (68), Expect = 3.0
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 454 ACGLAVLSSSHLKRHFRVHTGEKP 477
ACG + S+SH R FR G P
Sbjct: 294 ACGFS--SASHFSRAFRRQFGLSP 315
>gnl|CDD|226202 COG3677, COG3677, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 129
Score = 28.9 bits (65), Expect = 3.1
Identities = 10/70 (14%), Positives = 17/70 (24%), Gaps = 11/70 (15%)
Query: 367 VCEICGQGYKMKKALLVHVGMHNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQCDL 426
C C +K + G + C C +FT + G ++ L
Sbjct: 32 NCPRCKSSNVVKIGGIR-----RGHQRYKCKSCGSTFTVETGSP------LSKALYKIKL 80
Query: 427 CGKRFIHQKS 436
Sbjct: 81 QAVTLYMLGL 90
>gnl|CDD|225117 COG2207, AraC, AraC-type DNA-binding domain-containing proteins
[Transcription].
Length = 127
Score = 29.1 bits (65), Expect = 3.3
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 460 LSSSHLKRHFRVHTGEKPYQ 479
+S L R F+ TG P Q
Sbjct: 48 MSRRTLSRLFKKETGTSPSQ 67
>gnl|CDD|227480 COG5151, SSL1, RNA polymerase II transcription
initiation/nucleotide excision repair factor TFIIH,
subunit SSL1 [Transcription / DNA replication,
recombination, and repair].
Length = 421
Score = 30.0 bits (67), Expect = 3.3
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 15/93 (16%)
Query: 449 PIKCSACGLAVLSSSHLKRHFR----------VHTGEKPY--QCTTCGKRLRRTVSELNA 496
PI C C L ++ S+HL R + G P C C +
Sbjct: 322 PISCPICSLQLILSTHLARSYHHLYPLKPFVEKPEGTNPKSTHCFVCQGPFPKPPVSPFD 381
Query: 497 HIQTHSDLRPFVCEICGQGYKMKKALLVHVGMH 529
+ + CE+C + + +H +H
Sbjct: 382 ESTSSGRYQ---CELCKSTFCSDCDVFIHETLH 411
>gnl|CDD|197666 smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control
protein.
Length = 84
Score = 27.9 bits (63), Expect = 3.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 460 LSSSHLKRHFRVHTGEKPYQ 479
+S HL+R F+ TG P Q
Sbjct: 13 VSPRHLQRLFKKETGTTPKQ 32
>gnl|CDD|220291 pfam09561, RE_HpaII, HpaII restriction endonuclease. This family
includes the HpaII (recognises and cleaves C^CGG)
restriction endonuclease.
Length = 355
Score = 29.6 bits (67), Expect = 4.3
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 302 HNGINPFTCSFCNKSFTQKVGLQKHLPIHTGSTRFQWEQSHLNYVWRTVSELNAHIQTHS 361
G P F KS ++G L +T F++E S +N T+ ++NA I T S
Sbjct: 130 RTGQKP-LLGFSIKS---RLGSMPTLLNAGKTTNFKFEISGINLANPTIEKINA-ISTPS 184
Query: 362 DLRPFVCEICGQGYKMK 378
++ + I G +K
Sbjct: 185 KIKDRIKMIERLGGILK 201
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 181 to 207 amino acids in length. This domain
has two conserved sequence motifs: PIP and CEICG. The
domain carries a zinc-finger domain of the C2H2-type.
Length = 187
Score = 28.8 bits (65), Expect = 6.1
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 10/42 (23%)
Query: 33 FVCEICG-QGYKMKKALLVHVG--MHS------GIHPFTCHF 65
F CEICG YK +KA H H+ GI P T HF
Sbjct: 93 FKCEICGNTSYKGRKAFEKHFSEWRHAYGLKCLGI-PNTRHF 133
Score = 28.8 bits (65), Expect = 6.1
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 10/42 (23%)
Query: 507 FVCEICG-QGYKMKKALLVHVG--MHS------GIHPFTCHF 539
F CEICG YK +KA H H+ GI P T HF
Sbjct: 93 FKCEICGNTSYKGRKAFEKHFSEWRHAYGLKCLGI-PNTRHF 133
>gnl|CDD|222366 pfam13764, E3_UbLigase_R4, E3 ubiquitin-protein ligase UBR4. This
is a family of E## ubiquitin ligase enzymes.
Length = 794
Score = 29.2 bits (66), Expect = 7.9
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 24/70 (34%)
Query: 33 FVCEICGQGYKMK--KAL-------LVHVGMHSGIHPFTCHFCNKSFTQKIGLVKHLN-I 82
C +C +GY ++ K L V++G G T + V H N I
Sbjct: 465 LTCCVCREGYSLRPTKVLGIYTFSKRVNLGETEGKSRKTYGYTT---------VSHFNII 515
Query: 83 HNGTKKYQCH 92
H + CH
Sbjct: 516 H-----FDCH 520
>gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 616
Score = 28.9 bits (65), Expect = 7.9
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 14/56 (25%)
Query: 401 KSFTQKVGLQKHLPIHTGSTRFQCDLCGKRFIHQKSFYIHKMVHSGEKPIKCSACG 456
KS Q VGL +H + + C CG + F C CG
Sbjct: 572 KSNAQMVGLPEHPELALAAELIYCSNCGAKNPSTHRF--------------CPECG 613
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.138 0.465
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,484,406
Number of extensions: 2521350
Number of successful extensions: 3848
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3810
Number of HSP's successfully gapped: 141
Length of query: 566
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 464
Effective length of database: 6,413,494
Effective search space: 2975861216
Effective search space used: 2975861216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (27.7 bits)