BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1826
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 23/126 (18%)
Query: 3 LAQISWVRHRDIHLLTVSGYTYTS-----DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYE 57
+ +I+W R V G+T+T D R K Q+ +L IK + DSG Y+
Sbjct: 29 IPEITWKR-------AVDGFTFTEGDKSLDGRIEV--KGQHGSSSLHIKDVKLSDSGRYD 79
Query: 58 CQVSTTPPIG---ISMYLSVVEPITQIIGGPDMYIN-KGSTMNLTCVIKHSPEPPPAIYW 113
C+ ++ IG SMYL +E + I +Y + +G+ +N++C +K + PP +I+W
Sbjct: 80 CEAASR--IGGHQKSMYLD-IEYAPKFISNQTIYYSWEGNPINISCDVKSN--PPASIHW 134
Query: 114 LHNTEV 119
+ V
Sbjct: 135 RRDKLV 140
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 23/126 (18%)
Query: 3 LAQISWVRHRDIHLLTVSGYTYTS-----DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYE 57
+ +I+W R V G+T+T D R K Q+ +L IK + DSG Y+
Sbjct: 29 IPEITWKR-------AVDGFTFTEGDKSLDGRIEV--KGQHGSSSLHIKDVKLSDSGRYD 79
Query: 58 CQVSTTPPIG---ISMYLSVVEPITQIIGGPDMYIN-KGSTMNLTCVIKHSPEPPPAIYW 113
C+ ++ IG SMYL +E + I +Y + +G+ +N++C +K + PP +I+W
Sbjct: 80 CEAASR--IGGHQKSMYLD-IEYAPKFISNQTIYYSWEGNPINISCDVKSN--PPASIHW 134
Query: 114 LHNTEV 119
+ V
Sbjct: 135 RRDKLV 140
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 36 PQNE-DWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLS---VVEPITQIIGGPDMYINK 91
P+N D ++ ++ + D G YEC+VST P L +V P+ + GP + +
Sbjct: 73 PRNPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQ 132
Query: 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEV 119
G T+ +C + SP P++ W +TEV
Sbjct: 133 GLTLAASCTAEGSPA--PSVTW--DTEV 156
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 52 DSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMY----INKGSTMNLTCVIKHSPEP 107
D+GIY CQ T G + +VV I Q + ++ +G + C + SP
Sbjct: 69 DAGIYRCQ--ATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSP-- 124
Query: 108 PPAIYWL-HNTEVSQLN 123
PA+ WL HN EV+ ++
Sbjct: 125 APAVSWLYHNEEVTTIS 141
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 52 DSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMY----INKGSTMNLTCVIKHSPEP 107
D+GIY CQ T G + +VV I Q + ++ +G + C + SP
Sbjct: 71 DAGIYRCQ--ATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSP-- 126
Query: 108 PPAIYWL-HNTEVSQLN 123
PA+ WL HN EV+ ++
Sbjct: 127 APAVSWLYHNEEVTTIS 143
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 21/124 (16%)
Query: 6 ISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQ--VSTT 63
+SW+ H + T SD RF+ + LQI K D GIY C+ V
Sbjct: 130 VSWLYHNE-------EVTTISDNRFAMLANN-----NLQILNINKSDEGIYRCEGRVEAR 177
Query: 64 PPIGISMYLSVVEPITQIIGGPDMYIN----KGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119
I + +V + I P N +G M +C SPE PAI W N ++
Sbjct: 178 GEIDFRDIIVIVN-VPPAISMPQKSFNATAERGEEMTFSCRASGSPE--PAISWFRNGKL 234
Query: 120 SQLN 123
+ N
Sbjct: 235 IEEN 238
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 33.1 bits (74), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 21/124 (16%)
Query: 6 ISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQ--VSTT 63
+SW+ H + T SD RF+ + LQI K D GIY C+ V
Sbjct: 34 VSWLYHNE-------EVTTISDNRFAMLAN-----NNLQILNINKSDEGIYRCEGRVEAR 81
Query: 64 PPIGISMYLSVVEPITQIIGGPDMYIN----KGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119
I + +V + I P N +G M +C SPE PAI W N ++
Sbjct: 82 GEIDFRDIIVIVN-VPPAISMPQKSFNATAERGEEMTFSCRASGSPE--PAISWFRNGKL 138
Query: 120 SQLN 123
+ N
Sbjct: 139 IEEN 142
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 32.7 bits (73), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 79 TQIIGG-PDMY-INKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+++GG PD+ I +G +NLTC + +PPP + WL N
Sbjct: 222 ARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKN 259
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 79 TQIIGG-PDMY-INKGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119
+++GG PD+ I +G +NLTC + +PPP + WL N +
Sbjct: 117 ARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKNEKA 157
>pdb|1I85|A Chain A, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1I85|B Chain B, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1NCN|A Chain A, The Receptor-Binding Domain Of Human B7-2
pdb|1NCN|B Chain B, The Receptor-Binding Domain Of Human B7-2
Length = 110
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 23 TYTSDQRFSCIHKP-------QNEDWTLQIKYPQKRDSGIYECQVSTTPPIGI 68
Y ++F +H ++ WTL++ Q +D G+Y+C + P G+
Sbjct: 44 VYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGM 96
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 10/122 (8%)
Query: 2 SLAQISWVRHRDIHLLTVS------GYTYTSDQRFSCIHKPQN-EDWTLQIKYPQKRDSG 54
++ QISW + TV+ G++ + + + K + D T+ + DSG
Sbjct: 28 TITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG 87
Query: 55 IYECQVSTTPPIGISMYLSV---VEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAI 111
Y C+ T P +V VEP +I GPD I+ G+ I + +P I
Sbjct: 88 KYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHI 147
Query: 112 YW 113
W
Sbjct: 148 DW 149
>pdb|3BP6|A Chain A, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
pdb|3RNK|A Chain A, Crystal Structure Of The Complex Between Mouse Pd-1 Mutant
And Pd-L2 Igv Domain
pdb|3SBW|A Chain A, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
pdb|3SBW|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 117
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYEC-QVSTTPPIGI 68
D RF I P D+ + I ++ DSGIY C +S P + I
Sbjct: 59 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKLKI 101
>pdb|2IF7|A Chain A, Crystal Structure Of Ntb-A
pdb|2IF7|B Chain B, Crystal Structure Of Ntb-A
pdb|2IF7|C Chain C, Crystal Structure Of Ntb-A
pdb|2IF7|D Chain D, Crystal Structure Of Ntb-A
Length = 193
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 39 EDWTLQIKYPQKRDSGIYECQVSTTPPIGISMY-LSVVEPI--TQIIGGPDMYINKGSTM 95
+ ++LQ+ + D+G Y Q+ST +S Y L ++ + Q+ ++ N +
Sbjct: 68 QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCEL 127
Query: 96 NLTCVIKHSPEPPPAIYW--LHNTEVSQLNL 124
+LTC ++ + + + W L NT SQ NL
Sbjct: 128 HLTCSVEDA-DDNVSFRWEALGNTLSSQPNL 157
>pdb|2C9A|A Chain A, Crystal Structure Of The Mam-ig Module Of Receptor Protein
Tyrosine Phosphatase Mu
Length = 259
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 8 WVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIG 67
W++ D+ + TS +RF + + KRD+G Y C + T +G
Sbjct: 199 WLQGIDVRDAPLKEIKVTSSRRFIA---------SFNVVNTTKRDAGKYRCXIRTEGGVG 249
Query: 68 ISMYLSVV 75
IS Y +V
Sbjct: 250 ISNYAELV 257
>pdb|1NPU|A Chain A, Crystal Structure Of The Extracellular Domain Of Murine
Pd-1
pdb|3BP5|A Chain A, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
Length = 117
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP 65
D RF I P D+ + I ++ DSGIY C + P
Sbjct: 59 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHP 97
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 8 WVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIG 67
W++ D+ + TS +RF + + KRD+G Y C + T +G
Sbjct: 199 WLQGIDVRDAPLKEIKVTSSRRFIA---------SFNVVNTTKRDAGKYRCMIRTEGGVG 249
Query: 68 ISMYLSVV 75
IS Y +V
Sbjct: 250 ISNYAELV 257
>pdb|3RNQ|A Chain A, Crystal Structure Of The Complex Between The
Extracellular Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 117
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP 65
D RF I P D+ + I ++ DSGIY C + P
Sbjct: 59 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISRHP 97
>pdb|3BIK|B Chain B, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIK|C Chain C, Crystal Structure Of The Pd-1PD-L1 Complex
Length = 134
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYEC 58
D RF I P D+ + I ++ DSGIY C
Sbjct: 69 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLC 100
>pdb|1YPZ|E Chain E, Immune Receptor
pdb|1YPZ|G Chain G, Immune Receptor
Length = 207
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 16/116 (13%)
Query: 2 SLAQISWVRHRD----IHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYE 57
++ + W R I L ++ T + + S + TL I+ Q DSG Y
Sbjct: 28 TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYF 87
Query: 58 CQVST----------TPPIGISMYLSV-VEPITQIIGGPDMYINKGSTMNLTCVIK 102
C T T + V VEP +Q P ++I K T N+ C++K
Sbjct: 88 CAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMKNGT-NVACLVK 142
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 91 KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123
+G ++ L C I S PPP ++W N E+ Q N
Sbjct: 29 EGDSVKLECQI--SAIPPPKLFWKRNNEMVQFN 59
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGIS----MYLSV--VEPITQIIGGPDMY-INKGST 94
LQI+ ++ D G YEC + + + S +Y+ V V P I+ P + I G
Sbjct: 165 ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSIL--PMSHEIMPGGN 222
Query: 95 MNLTCVIKHSPEPPPAIYWLHNTE 118
+N+TCV SP P + W+ E
Sbjct: 223 VNITCVAVGSPM--PYVKWMQGAE 244
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 3 LAQISWVRHRDIHLLTVSGYTYTS-----DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYE 57
+ +I+W R V G+T+T D R K Q+ +L IK + DSG Y+
Sbjct: 123 IPEITWKR-------AVDGFTFTEGDKSLDGRIEV--KGQHGSSSLHIKDVKLSDSGRYD 173
Query: 58 CQVSTTPPIG---ISMYLSV 74
C+ ++ IG SMYL +
Sbjct: 174 CEAASR--IGGHQKSMYLDI 191
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 43 LQIKYPQKRDSGIYECQVSTTPPIGIS--MYLSVVEPITQIIGGPDMYINKGSTMNLTCV 100
L +K ++ D+G Y CQV IS ++L+V + D+ + + L+C
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCE 121
Query: 101 IKHSPEPPPAIYWLHNTEVS 120
PEP ++W T++
Sbjct: 122 AVGPPEPVTIVWWRGTTKIG 141
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 20/94 (21%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYIN----------- 90
LQI Q DSG+Y C + + E +I+ P ++
Sbjct: 178 ALQISRLQPGDSGVYRCSARNP-----ASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVI 232
Query: 91 --KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQL 122
+G L C + S PPP+ WL EV QL
Sbjct: 233 AIEGKDAVLECCV--SGYPPPSFTWLRGEEVIQL 264
>pdb|2FJH|L Chain L, Structure Of The B20-4 Fab, A Phage Derived Fab Fragment,
In Complex With Vegf
pdb|2FJH|A Chain A, Structure Of The B20-4 Fab, A Phage Derived Fab Fragment,
In Complex With Vegf
Length = 214
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 40 DWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYIN-------KG 92
D+TL I Q D Y CQ S T P+ V I + + P ++I K
Sbjct: 70 DFTLTISSLQPEDFATYYCQQSNTSPLTFGQGTKV--EIKRTVAAPSVFIFPPSDEQLKS 127
Query: 93 STMNLTCVIKH 103
T ++ C++ +
Sbjct: 128 GTASVVCLLNN 138
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 87 MYINKGSTMNLTCVIKHSPEPPPAIYWL 114
+++++G T+ C + +PPPAI WL
Sbjct: 395 VFVDEGHTVQFVC--RADGDPPPAILWL 420
>pdb|3SO3|B Chain B, Structures Of Fab-Protease Complexes Reveal A Highly
Specific Non- Canonical Mechanism Of Inhibition
Length = 217
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 40 DWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYIN-------KG 92
D+TL I + D +Y CQ + P G + IT+ + P ++I K
Sbjct: 71 DFTLTINSLEPEDFAVYYCQQRSNWPPGYTFGQGTKVEITRTVAAPSVFIFPPSDEQLKS 130
Query: 93 STMNLTCVIKH 103
T ++ C++ +
Sbjct: 131 GTASVVCLLNN 141
>pdb|2YPL|D Chain D, Structural Features Underlying T-cell Receptor Sensitivity
To Concealed Mhc Class I Micropolymorphisms
Length = 199
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 31/112 (27%)
Query: 14 IHLLT--VSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS---TTPPIGI 68
+ LLT S DQR + + +++ +L+I Q DS IY C VS GI
Sbjct: 42 LQLLTYIFSNMDMKQDQRLTVLLNKKDKHLSLRIADTQTGDSAIYFCAVSGGYQKVTFGI 101
Query: 69 SMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVS 120
L V+ I P PA+Y L +++ S
Sbjct: 102 GTKLQVIPNI--------------------------QNPDPAVYQLRDSKSS 127
>pdb|2M2D|A Chain A, Human Programmed Cell Death 1 Receptor
Length = 118
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYEC-QVSTTPPIGISMYLSVVEPITQ 80
D RF P D+ + + ++ DSG Y C +S P I L +T+
Sbjct: 60 DSRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELRVTE 114
>pdb|2R8S|L Chain L, High Resolution Structure Of A Specific Synthetic Fab
Bound To P4-P6 Rna Ribozyme Domain
Length = 214
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 40 DWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYIN-------KG 92
D+TL I Q D Y CQ S + PI V I + + P ++I K
Sbjct: 70 DFTLTISSLQPEDFATYYCQQSYSSPITFGQGTKV--EIKRTVAAPSVFIFPPSDEQLKS 127
Query: 93 STMNLTCVIKH 103
T ++ C++ +
Sbjct: 128 GTASVVCLLNN 138
>pdb|3UTZ|A Chain A, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
pdb|3UTZ|D Chain D, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
pdb|3UTZ|E Chain E, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
Length = 219
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 40 DWTLQIKYPQKRDSGIYEC-QVSTTPP-IGISMYLSVVEPITQIIGGPDMYIN------- 90
D+TL+I + D G+Y C Q S PP G L I + + P ++I
Sbjct: 75 DFTLKISRVEAEDLGVYYCFQASHVPPTFGSGTKLE----IKRTVAAPSVFIFPPSDEQL 130
Query: 91 KGSTMNLTCVIKH 103
K T ++ C++ +
Sbjct: 131 KSGTASVVCLLNN 143
>pdb|1A4K|L Chain L, Diels Alder Catalytic Antibody With Transition State
Analogue
pdb|1A4K|A Chain A, Diels Alder Catalytic Antibody With Transition State
Analogue
Length = 217
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 40 DWTLQIKYPQKRDSGIYEC-QVSTTPP-IGISMYLSVVEPITQIIGGPDMYIN------- 90
D+TL+I + D G+Y C QV+ PP G L I + + P ++I
Sbjct: 75 DFTLKISRVEAEDLGVYFCSQVTHVPPTFGGGTKLE----IKRTVAAPSVFIFPPSDEQL 130
Query: 91 KGSTMNLTCVIKH 103
K T ++ C++ +
Sbjct: 131 KSGTASVVCLLNN 143
>pdb|3RRQ|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Pd-1
Length = 129
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYEC-QVSTTPPIGISMYLSVVEPITQ 80
D RF P D+ + + ++ DSG Y C +S P + I L +T+
Sbjct: 61 DCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKLQIKESLRAELRVTE 115
>pdb|3QCT|L Chain L, Crystal Structure Of The Humanized Apo Lt3015
Anti-Lysophosphatidic Acid Antibody Fab Fragment
pdb|3QCU|L Chain L, Crystal Structure Of The Lt3015 Antibody Fab Fragment In
Complex With Lysophosphatidic Acid (14:0)
pdb|3QCU|M Chain M, Crystal Structure Of The Lt3015 Antibody Fab Fragment In
Complex With Lysophosphatidic Acid (14:0)
pdb|3QCV|L Chain L, Crystal Structure Of The Lt3015 Antibody Fab Fragment In
Complex With Lysophosphatidic Acid (18:2)
pdb|3QCV|M Chain M, Crystal Structure Of The Lt3015 Antibody Fab Fragment In
Complex With Lysophosphatidic Acid (18:2)
Length = 218
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 40 DWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYIN-------KG 92
D+TL+I + D G+Y C ST P + I + + P ++I K
Sbjct: 75 DFTLKISRVEAEDVGVYFCSQSTHFPFTFGQGTKL--EIKRTVAAPSVFIFPPSDEQLKS 132
Query: 93 STMNLTCVIKH 103
T ++ C++ +
Sbjct: 133 GTASVVCLLNN 143
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 38 NEDWTLQIKYPQKRDSGIYECQV---STTPPIGISMYLSVVEPITQIIGG--PDMYINKG 92
N+ +++K +D G Y C T + L+V+E + I G + + G
Sbjct: 622 NDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIG 681
Query: 93 STMNLTCVIKHSPEPPPAIYWLHNTE 118
++ ++C S PPP I W + E
Sbjct: 682 ESIEVSCT--ASGNPPPQIMWFKDNE 705
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 20 SGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVE-- 76
+G + D R +K + W++ + D G Y C V I + L VVE
Sbjct: 54 NGKEFKPDHRIGG-YKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERS 112
Query: 77 ---PITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVS 120
PI Q + + GS + C + P+P I WL + EV+
Sbjct: 113 PHRPILQAGLPANKTVALGSNVEFMCKVYSDPQP--HIQWLKHIEVN 157
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 37 QNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINK----G 92
+ ++ +L PQ D G Y+C T P G++ + T +I P K G
Sbjct: 58 RKDEGSLVFLRPQASDEGHYQCFAET--PAGVASSRVISFRKTYLIASPAKTHEKTPIEG 115
Query: 93 STMNLTCVIKHSPEPPPAIYW 113
L CV+ ++ P P I W
Sbjct: 116 RPFQLDCVLPNA-YPKPLITW 135
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 20 SGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVE-- 76
+G + D R +K + W++ + D G Y C V I + L VVE
Sbjct: 53 NGKEFKPDHRIGG-YKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERS 111
Query: 77 ---PITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVS 120
PI Q + + GS + C + P+P I WL + EV+
Sbjct: 112 PHRPILQAGLPANKTVALGSNVEFMCKVYSDPQP--HIQWLKHIEVN 156
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 20 SGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVE-- 76
+G + D R +K + W++ + D G Y C V I + L VVE
Sbjct: 53 NGKEFKPDHRIGG-YKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERS 111
Query: 77 ---PITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVS 120
PI Q + + GS + C + P+P I WL + EV+
Sbjct: 112 PHRPILQAGLPANKTVALGSNVEFMCKVYSDPQP--HIQWLKHIEVN 156
>pdb|2GCY|A Chain A, Humanized Antibody C25 Fab Fragment
Length = 216
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 40 DWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYIN-------KG 92
D+TL I + D +Y CQ S P V I + + P ++I K
Sbjct: 74 DFTLTISSLEPEDFAVYYCQQSNEAPFTFGQGTKV--EIKRTVAAPSVFIFPPSDEQLKS 131
Query: 93 STMNLTCVIKH 103
T ++ C++ +
Sbjct: 132 GTASVVCLLNN 142
>pdb|1A4J|L Chain L, Diels Alder Catalytic Antibody Germline Precursor
pdb|1A4J|A Chain A, Diels Alder Catalytic Antibody Germline Precursor
Length = 217
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 13/73 (17%)
Query: 40 DWTLQIKYPQKRDSGIYECQVST--TPPIGISMYLSVVEPITQIIGGPDMYIN------- 90
D+TL+I + D G+Y C ST P G L I + + P ++I
Sbjct: 75 DFTLKISRVEAEDLGVYFCSQSTHVPPTFGGGTKLE----IKRTVAAPSVFIFPPSDEQL 130
Query: 91 KGSTMNLTCVIKH 103
K T ++ C++ +
Sbjct: 131 KSGTASVVCLLNN 143
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 38 NEDWTLQIKYPQKRDSGIYECQVSTTPPIGIS--MYLSVV-EPITQIIGGPDMYINKGST 94
N + TL + + D+ Y C + + S + L V+ P T II PD G+
Sbjct: 517 NGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGAN 576
Query: 95 MNLTCVIKHSPEP 107
+NL+C +P P
Sbjct: 577 LNLSCHSASNPSP 589
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 100 VIKHSPEPPPAIYWLHNTEVS 120
+K +P+ P A+YWL T++
Sbjct: 31 ALKENPQDPEALYWLARTQLK 51
>pdb|4D94|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 26.6 bits (57), Expect = 6.3, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGP 85
D RF C +N+ + + + +K DSG + + P ++ +V++ + ++G P
Sbjct: 781 DTRFFCFDDHKNQTFPINLDINKKADSGSTKIEFRLNP----NLLTTVIKNLDHLLGVP 835
>pdb|2PN5|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 26.6 bits (57), Expect = 6.3, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGP 85
D RF C +N+ + + + +K DSG + + P ++ +V++ + ++G P
Sbjct: 781 DTRFFCFDDHKNQTFPINLDINKKADSGSTKIEFRLNP----NLLTTVIKNLDHLLGVP 835
>pdb|3SOB|L Chain L, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 237
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 40 DWTLQIKYPQKRDSGIYECQVS-TTPP-----IGISMYLSVVEPITQIIGGPDMYINKGS 93
D+TL I Q D Y CQ S TTPP + + +V P I D + G
Sbjct: 93 DFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSG- 151
Query: 94 TMNLTCVIKH 103
T ++ C++ +
Sbjct: 152 TASVVCLLNN 161
>pdb|1JPD|X Chain X, L-Ala-DL-Glu Epimerase
Length = 324
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 59 QVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTM 95
Q S IGI++ +V+ T +IG PD N ST+
Sbjct: 107 QQSLADLIGITLPETVITAQTVVIGTPDQMANSASTL 143
>pdb|3ESV|F Chain F, Crystal Structure Of The Engineered Neutralizing Antibody
M18
pdb|3ESV|G Chain G, Crystal Structure Of The Engineered Neutralizing Antibody
M18
pdb|3ETB|F Chain F, Crystal Structure Of The Engineered Neutralizing Antibody
M18 Complexed With Anthrax Protective Antigen Domain 4
pdb|3ETB|G Chain G, Crystal Structure Of The Engineered Neutralizing Antibody
M18 Complexed With Anthrax Protective Antigen Domain 4
pdb|3ETB|H Chain H, Crystal Structure Of The Engineered Neutralizing Antibody
M18 Complexed With Anthrax Protective Antigen Domain 4
pdb|3ETB|I Chain I, Crystal Structure Of The Engineered Neutralizing Antibody
M18 Complexed With Anthrax Protective Antigen Domain 4
Length = 252
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 29 RFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP 65
RFS D++L I ++ D G Y CQ TPP
Sbjct: 66 RFS--GSGSGTDYSLTINNLEQEDIGTYFCQQGNTPP 100
>pdb|2FJF|L Chain L, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|A Chain A, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|C Chain C, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|E Chain E, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|G Chain G, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|J Chain J, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|M Chain M, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|O Chain O, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|Q Chain Q, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|S Chain S, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|U Chain U, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJF|W Chain W, Structure Of The G6 Fab, A Phage Derived Vegf Binding Fab
pdb|2FJG|L Chain L, Structure Of The G6 Fab, A Phage Derived Fab Fragment, In
Complex With Vegf
pdb|2FJG|A Chain A, Structure Of The G6 Fab, A Phage Derived Fab Fragment, In
Complex With Vegf
pdb|2H9G|A Chain A, Crystal Structure Of Phage Derived Fab Bdf1 With Human
Death Receptor 5 (dr5)
pdb|2H9G|L Chain L, Crystal Structure Of Phage Derived Fab Bdf1 With Human
Death Receptor 5 (dr5)
pdb|2R0K|L Chain L, Protease Domain Of Hgfa With Inhibitor Fab58
pdb|2R0L|L Chain L, Short Form Hgfa With Inhibitory Fab75
pdb|3GRW|L Chain L, Fgfr3 In Complex With A Fab
Length = 214
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 40 DWTLQIKYPQKRDSGIYECQVS-TTPP-----IGISMYLSVVEPITQIIGGPDMYINKGS 93
D+TL I Q D Y CQ S TTPP + + +V P I D + G
Sbjct: 70 DFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSG- 128
Query: 94 TMNLTCVIKH 103
T ++ C++ +
Sbjct: 129 TASVVCLLNN 138
>pdb|1QKZ|L Chain L, Fab Fragment (Mn14c11.6) In Complex With A Peptide Antigen
Derived From Neisseria Meningitidis P1.7 Serosubtype
Antigen And Domain Ii From Streptococcal Protein G
Length = 217
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 24 YTSDQRFSCI-----HKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP 65
YT RFS + D+TL+I + D G+Y C ST P
Sbjct: 54 YTVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHFP 100
>pdb|1HXM|A Chain A, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|C Chain C, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|E Chain E, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|G Chain G, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
Length = 229
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 15/72 (20%)
Query: 43 LQIKYPQKRDSGIYECQVSTTPPIGISMYLS-----------VVEPITQIIGGPDMYINK 91
L+I P +RD G Y C T +G+ + VEP +Q P +++ K
Sbjct: 77 LKILAPSERDEGSYYCACDT---LGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVMK 133
Query: 92 GSTMNLTCVIKH 103
T N+ C++K
Sbjct: 134 NGT-NVACLVKE 144
>pdb|3U30|B Chain B, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
pdb|3U30|E Chain E, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
Length = 214
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 40 DWTLQIKYPQKRDSGIYECQVS-TTPP-----IGISMYLSVVEPITQIIGGPDMYINKGS 93
D+TL I Q D Y CQ S TTPP + + +V P I D + G
Sbjct: 70 DFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSG- 128
Query: 94 TMNLTCVIKH 103
T ++ C++ +
Sbjct: 129 TASVVCLLNN 138
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homo1
Length = 118
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 37 QNEDWTLQIKYPQKRDSGIYECQVST 62
Q E+ LQI+Y + D+G Y C ST
Sbjct: 58 QLENGVLQIRYAKLGDTGRYTCIAST 83
>pdb|3QOS|L Chain L, Crystal Structure Of Human Germline Antibody 3-23B3
pdb|3QOS|A Chain A, Crystal Structure Of Human Germline Antibody 3-23B3
Length = 220
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 40 DWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYIN-------KG 92
D+TL I Q D +Y CQ + P+ V I + + P ++I K
Sbjct: 76 DFTLTISSLQAEDVAVYYCQQYYSTPLTFGQGTKV--EIKRTVAAPSVFIFPPSDEQLKS 133
Query: 93 STMNLTCVIKH 103
T ++ C++ +
Sbjct: 134 GTASVVCLLNN 144
>pdb|3PGF|L Chain L, Crystal Structure Of Maltose Bound Mbp With A
Conformationally Specific Synthetic Antigen Binder (Sab)
Length = 215
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 40 DWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYIN-------KG 92
D+TL I Q D Y CQ S+ P+ V I + + P ++I K
Sbjct: 71 DFTLTISSLQPEDFATYYCQQSSYIPVTFGQGTKV--EIKRTVAAPSVFIFPPSDSQLKS 128
Query: 93 STMNLTCVIKH 103
T ++ C++ +
Sbjct: 129 GTASVVCLLNN 139
>pdb|3QOT|L Chain L, Crystal Structure Of Human Germline Antibody 1-69B3
Length = 221
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 40 DWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYIN-------KG 92
D+TL I Q D +Y CQ + P+ V I + + P ++I K
Sbjct: 77 DFTLTISSLQAEDVAVYYCQQYYSTPLTFGQGTKV--EIKRTVAAPSVFIFPPSDEQLKS 134
Query: 93 STMNLTCVIKH 103
T ++ C++ +
Sbjct: 135 GTASVVCLLNN 145
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 40 DWTLQIKYPQKRDSGIYECQV-----STTPPIGISMYLSVVEPITQIIGGPDMYINKGST 94
D +L ++ QK D GIY C++ S + +++ EP D+ + G T
Sbjct: 83 DGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEP-------RDLRVRVGDT 135
Query: 95 MNLTCVIKHSPEPP-PAIYWLHNT 117
+ C I+ + E + W+ ++
Sbjct: 136 TQMRCSIQSTEEKRVTKVNWMFSS 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,768,371
Number of Sequences: 62578
Number of extensions: 171170
Number of successful extensions: 948
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 917
Number of HSP's gapped (non-prelim): 107
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)