Query psy1826
Match_columns 169
No_of_seqs 112 out of 1403
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 17:22:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.6 3E-14 6.5E-19 118.6 14.7 105 5-125 272-377 (1051)
2 PHA02826 IL-1 receptor-like pr 99.6 3E-13 6.4E-18 97.6 15.3 108 42-164 99-210 (227)
3 KOG3513|consensus 99.5 2.3E-13 5.1E-18 113.4 14.7 110 4-127 456-566 (1051)
4 cd05771 IgC_Tapasin_R Tapasin- 99.5 6E-13 1.3E-17 89.3 12.3 78 42-119 2-80 (139)
5 PHA02785 IL-beta-binding prote 99.4 2.4E-11 5.3E-16 92.4 16.4 82 42-123 178-267 (326)
6 KOG4194|consensus 99.4 1.8E-12 4E-17 102.5 10.0 113 5-128 643-756 (873)
7 KOG4221|consensus 99.3 5.9E-12 1.3E-16 105.6 10.0 108 4-126 267-375 (1381)
8 KOG4221|consensus 99.3 4.5E-11 9.8E-16 100.5 13.9 136 5-165 171-314 (1381)
9 KOG4194|consensus 99.2 6.1E-11 1.3E-15 94.1 9.5 112 42-162 575-689 (873)
10 cd05853 Ig6_Contactin-4 Sixth 99.0 1.1E-09 2.4E-14 67.1 7.0 69 3-78 16-85 (85)
11 PHA02785 IL-beta-binding prote 99.0 1.1E-08 2.4E-13 77.9 13.5 76 42-117 83-164 (326)
12 cd05892 Ig_Myotilin_C C-termin 99.0 2.5E-09 5.4E-14 64.0 7.1 61 5-74 14-75 (75)
13 KOG4222|consensus 99.0 1.3E-09 2.9E-14 91.4 6.7 103 5-121 163-267 (1281)
14 cd05854 Ig6_Contactin-2 Sixth 99.0 1E-08 2.3E-13 62.9 8.9 68 4-78 17-85 (85)
15 cd05852 Ig5_Contactin-1 Fifth 98.9 7.9E-09 1.7E-13 61.5 7.0 57 4-74 16-73 (73)
16 cd05893 Ig_Palladin_C C-termin 98.9 6.9E-09 1.5E-13 62.1 6.6 61 5-74 14-75 (75)
17 KOG4222|consensus 98.9 6.2E-09 1.3E-13 87.5 7.8 98 5-118 256-354 (1281)
18 cd05744 Ig_Myotilin_C_like Imm 98.9 1.9E-08 4.1E-13 60.2 7.5 62 4-74 13-75 (75)
19 cd04970 Ig6_Contactin_like Six 98.9 1.4E-08 3E-13 62.2 7.1 37 42-78 48-85 (85)
20 cd05881 Ig1_Necl-2 First (N-te 98.9 6.9E-08 1.5E-12 60.3 10.1 69 3-73 26-94 (95)
21 cd05763 Ig_1 Subgroup of the i 98.9 2E-08 4.2E-13 60.0 7.2 60 5-74 14-74 (75)
22 cd05762 Ig8_MLCK Eighth immuno 98.8 2.5E-08 5.4E-13 62.9 7.8 64 4-78 30-94 (98)
23 cd05882 Ig1_Necl-1 First (N-te 98.8 6E-08 1.3E-12 60.7 9.3 68 4-73 27-94 (95)
24 cd05726 Ig4_Robo Fhird immunog 98.8 4E-08 8.6E-13 60.9 8.3 68 4-77 16-84 (90)
25 cd07693 Ig1_Robo First immunog 98.8 4E-08 8.8E-13 61.6 8.3 44 77-122 1-44 (100)
26 cd05863 Ig2_VEGFR-3 Second imm 98.8 3.2E-08 7E-13 57.8 6.9 34 42-75 32-66 (67)
27 cd05735 Ig8_DSCAM Eight immuno 98.8 4.4E-08 9.5E-13 60.5 7.6 67 4-78 16-85 (88)
28 PHA03376 BARF1; Provisional 98.8 2.9E-07 6.2E-12 63.5 11.7 110 2-117 42-162 (221)
29 cd05723 Ig4_Neogenin Fourth im 98.8 4E-08 8.7E-13 58.1 6.5 57 4-74 14-71 (71)
30 cd05745 Ig3_Peroxidasin Third 98.8 3.7E-08 8.1E-13 58.7 6.3 56 5-74 18-74 (74)
31 cd05876 Ig3_L1-CAM Third immun 98.7 8.8E-08 1.9E-12 56.6 7.2 56 5-74 14-70 (71)
32 cd05725 Ig3_Robo Third immunog 98.7 7.3E-08 1.6E-12 56.6 6.8 54 5-73 14-68 (69)
33 cd04969 Ig5_Contactin_like Fif 98.7 6.9E-08 1.5E-12 57.3 6.7 57 4-74 16-73 (73)
34 cd05746 Ig4_Peroxidasin Fourth 98.7 7.9E-08 1.7E-12 56.5 6.6 55 4-72 13-68 (69)
35 cd05762 Ig8_MLCK Eighth immuno 98.7 1.4E-07 3E-12 59.5 8.0 74 78-160 1-74 (98)
36 cd05748 Ig_Titin_like Immunogl 98.7 1.2E-07 2.6E-12 56.4 7.4 59 4-73 14-73 (74)
37 cd05894 Ig_C5_MyBP-C C5 immuno 98.7 1.1E-07 2.5E-12 58.4 7.4 61 4-74 25-86 (86)
38 cd05867 Ig4_L1-CAM_like Fourth 98.7 1.4E-07 3E-12 56.5 7.4 59 4-74 16-75 (76)
39 cd04976 Ig2_VEGFR Second immun 98.7 1.5E-07 3.2E-12 55.7 7.2 57 4-75 13-70 (71)
40 cd05760 Ig2_PTK7 Second immuno 98.7 1.1E-07 2.3E-12 57.2 6.5 59 4-74 13-74 (77)
41 cd04975 Ig4_SCFR_like Fourth i 98.7 3.2E-07 6.8E-12 58.1 8.8 38 85-123 11-48 (101)
42 cd05737 Ig_Myomesin_like_C C-t 98.7 2.2E-07 4.7E-12 57.8 7.9 60 4-73 31-91 (92)
43 cd05737 Ig_Myomesin_like_C C-t 98.7 3.2E-07 6.8E-12 57.0 8.5 39 84-124 8-46 (92)
44 cd07701 Ig1_Necl-3 First (N-te 98.7 3.8E-07 8.3E-12 57.1 8.8 69 4-74 27-95 (95)
45 cd05851 Ig3_Contactin-1 Third 98.6 2.5E-07 5.5E-12 57.0 7.6 33 42-74 54-87 (88)
46 cd04975 Ig4_SCFR_like Fourth i 98.6 1.7E-07 3.7E-12 59.3 6.7 34 42-75 66-100 (101)
47 cd05747 Ig5_Titin_like M5, fif 98.6 4.9E-07 1.1E-11 56.1 8.7 76 77-161 3-78 (92)
48 cd05734 Ig7_DSCAM Seventh immu 98.6 3.9E-07 8.5E-12 54.9 8.0 64 4-73 13-78 (79)
49 cd05864 Ig2_VEGFR-2 Second imm 98.6 2.8E-07 6.2E-12 54.3 7.0 33 42-74 35-68 (70)
50 cd05730 Ig3_NCAM-1_like Third 98.6 2.9E-07 6.3E-12 57.5 7.5 60 4-75 33-93 (95)
51 cd05868 Ig4_NrCAM Fourth immun 98.6 2.8E-07 6.2E-12 55.2 7.2 33 42-74 42-75 (76)
52 cd05870 Ig5_NCAM-2 Fifth immun 98.6 4.5E-07 9.8E-12 57.0 8.3 66 5-74 32-98 (98)
53 cd05731 Ig3_L1-CAM_like Third 98.6 2.4E-07 5.1E-12 54.5 6.4 33 42-74 37-70 (71)
54 cd04971 Ig_TrKABC_d5 Fifth dom 98.6 1.7E-07 3.7E-12 56.9 5.8 33 41-73 46-79 (81)
55 cd05894 Ig_C5_MyBP-C C5 immuno 98.6 5.7E-07 1.2E-11 55.2 8.2 68 86-161 4-71 (86)
56 cd05738 Ig2_RPTP_IIa_LAR_like 98.6 3.6E-07 7.7E-12 54.4 7.1 58 5-74 14-73 (74)
57 cd05859 Ig4_PDGFR-alpha Fourth 98.6 2.3E-07 4.9E-12 58.8 6.5 34 42-75 66-100 (101)
58 cd05740 Ig_CEACAM_D4 Fourth im 98.6 3.4E-07 7.3E-12 56.9 7.2 57 4-74 32-90 (91)
59 cd05855 Ig_TrkB_d5 Fifth domai 98.6 2E-07 4.3E-12 56.3 5.8 33 41-73 44-77 (79)
60 PF07679 I-set: Immunoglobulin 98.6 8.9E-07 1.9E-11 54.4 9.0 76 78-162 1-76 (90)
61 cd04968 Ig3_Contactin_like Thi 98.6 3.9E-07 8.5E-12 56.1 7.2 33 42-74 54-87 (88)
62 cd05851 Ig3_Contactin-1 Third 98.6 3.4E-07 7.3E-12 56.5 6.9 44 77-122 1-44 (88)
63 cd05749 Ig2_Tyro3_like Second 98.6 6.4E-07 1.4E-11 54.4 7.8 39 82-122 3-42 (81)
64 cd05888 Ig1_Nectin-4_like Frst 98.6 1.3E-06 2.7E-11 55.2 9.5 47 28-74 51-99 (100)
65 cd05756 Ig1_IL1R_like First im 98.6 4.4E-07 9.4E-12 56.7 7.1 60 3-73 33-93 (94)
66 cd05764 Ig_2 Subgroup of the i 98.6 4.4E-07 9.5E-12 53.9 6.8 57 4-73 16-73 (74)
67 cd04978 Ig4_L1-NrCAM_like Four 98.6 4.9E-07 1.1E-11 53.9 7.0 33 42-74 42-75 (76)
68 cd05866 Ig1_NCAM-2 First immun 98.5 6.5E-07 1.4E-11 55.7 7.7 59 5-73 30-90 (92)
69 cd05713 Ig_MOG_like Immunoglob 98.5 1.1E-06 2.4E-11 55.3 8.9 47 28-74 51-99 (100)
70 cd05717 Ig1_Necl-1-3_like Firs 98.5 1.2E-06 2.7E-11 54.6 8.9 69 4-74 27-95 (95)
71 cd05736 Ig2_Follistatin_like S 98.5 1.1E-06 2.3E-11 52.5 8.2 61 4-75 13-74 (76)
72 cd05857 Ig2_FGFR Second immuno 98.5 5.9E-07 1.3E-11 54.8 7.1 34 41-74 51-85 (85)
73 cd05865 Ig1_NCAM-1 First immun 98.5 7.6E-07 1.6E-11 55.8 7.6 62 4-74 31-95 (96)
74 cd05765 Ig_3 Subgroup of the i 98.5 5.6E-07 1.2E-11 54.3 6.9 33 42-74 48-81 (81)
75 cd04977 Ig1_NCAM-1_like First 98.5 1.1E-06 2.4E-11 54.6 8.1 35 39-73 55-91 (92)
76 cd05865 Ig1_NCAM-1 First immun 98.5 1.1E-06 2.4E-11 55.1 8.2 73 83-162 6-80 (96)
77 cd04972 Ig_TrkABC_d4 Fourth do 98.5 2.1E-06 4.5E-11 53.0 9.3 38 84-123 7-44 (90)
78 cd04973 Ig1_FGFR First immunog 98.5 6.8E-07 1.5E-11 53.9 7.0 53 5-72 24-77 (79)
79 cd05732 Ig5_NCAM-1_like Fifth 98.5 1.1E-06 2.3E-11 54.9 7.9 64 5-74 32-96 (96)
80 PF07679 I-set: Immunoglobulin 98.5 1.1E-06 2.4E-11 54.0 7.9 61 3-74 29-90 (90)
81 cd05856 Ig2_FGFRL1-like Second 98.5 4.1E-07 8.9E-12 54.9 5.8 33 41-73 48-81 (82)
82 cd05891 Ig_M-protein_C C-termi 98.5 1.4E-06 3E-11 54.2 7.7 60 4-73 31-91 (92)
83 cd05887 Ig1_Nectin-3_like Firs 98.5 3.1E-06 6.7E-11 53.0 9.1 46 28-74 48-95 (96)
84 cd05775 Ig_SLAM-CD84_like_N N- 98.5 2.1E-06 4.6E-11 53.9 8.4 57 3-63 19-83 (97)
85 cd05869 Ig5_NCAM-1 Fifth immun 98.5 1.6E-06 3.4E-11 54.4 7.9 65 4-74 32-97 (97)
86 cd05895 Ig_Pro_neuregulin-1 Im 98.5 1.7E-06 3.6E-11 51.7 7.6 59 4-69 14-73 (76)
87 cd05848 Ig1_Contactin-5 First 98.4 2.8E-06 6E-11 53.0 8.6 44 78-123 2-48 (94)
88 cd05891 Ig_M-protein_C C-termi 98.4 2.3E-06 5.1E-11 53.1 8.1 39 84-124 8-46 (92)
89 cd05724 Ig2_Robo Second immuno 98.4 9.5E-07 2.1E-11 53.9 6.2 56 4-72 27-84 (86)
90 cd05722 Ig1_Neogenin First imm 98.4 3E-06 6.5E-11 52.9 8.4 42 81-124 3-44 (95)
91 cd05877 Ig_LP_like Immunoglobu 98.4 4.3E-06 9.3E-11 53.2 9.2 47 28-75 56-103 (106)
92 cd05773 Ig8_hNephrin_like Eigh 98.4 1.2E-06 2.6E-11 56.3 6.6 37 42-78 70-108 (109)
93 cd04974 Ig3_FGFR Third immunog 98.4 5.3E-07 1.2E-11 55.8 4.7 33 42-74 56-89 (90)
94 cd05886 Ig1_Nectin-1_like Firs 98.4 5.2E-06 1.1E-10 52.3 9.1 46 28-74 51-98 (99)
95 cd07702 Ig2_VEGFR-1 Second imm 98.4 2.4E-06 5.3E-11 50.6 7.2 46 4-63 13-58 (72)
96 cd05718 Ig1_PVR_like First imm 98.4 5.2E-06 1.1E-10 52.0 9.0 36 39-74 60-97 (98)
97 cd05714 Ig_CSPGs_LP Immunoglob 98.4 6.6E-06 1.4E-10 52.4 9.6 38 38-75 65-103 (106)
98 cd05750 Ig_Pro_neuregulin Immu 98.4 2.5E-06 5.4E-11 50.6 7.1 30 40-69 42-72 (75)
99 cd05728 Ig4_Contactin-2-like F 98.4 1.4E-06 2.9E-11 53.3 6.1 55 4-73 29-84 (85)
100 cd05857 Ig2_FGFR Second immuno 98.4 2.9E-06 6.3E-11 51.7 7.5 36 87-124 4-39 (85)
101 cd05743 Ig_Perlecan_D2_like Im 98.4 2.5E-06 5.5E-11 51.2 7.0 54 4-68 16-70 (78)
102 cd04972 Ig_TrkABC_d4 Fourth do 98.4 2.9E-06 6.2E-11 52.4 7.3 34 40-73 55-89 (90)
103 cd05850 Ig1_Contactin-2 First 98.4 3.4E-06 7.3E-11 52.6 7.6 44 78-123 2-48 (94)
104 cd05879 Ig_P0 Immunoglobulin ( 98.4 5E-06 1.1E-10 53.9 8.4 36 28-63 67-102 (116)
105 cd05747 Ig5_Titin_like M5, fif 98.3 3.1E-06 6.7E-11 52.5 7.0 58 4-72 33-91 (92)
106 cd05878 Ig_Aggrecan_like Immun 98.3 1E-05 2.2E-10 52.0 9.5 73 3-75 26-107 (110)
107 cd04968 Ig3_Contactin_like Thi 98.3 3.7E-06 7.9E-11 51.7 7.1 42 78-121 2-43 (88)
108 cd05757 Ig2_IL1R_like Second i 98.3 5E-06 1.1E-10 51.7 7.7 45 4-63 30-74 (92)
109 cd05728 Ig4_Contactin-2-like F 98.3 5.7E-06 1.2E-10 50.6 7.7 41 81-123 3-43 (85)
110 cd05752 Ig1_FcgammaR_like Frst 98.3 7.6E-06 1.6E-10 49.2 8.1 42 79-121 2-43 (78)
111 cd05846 Ig1_MRC-OX-2_like Firs 98.3 6.5E-06 1.4E-10 51.6 8.0 37 38-74 58-96 (97)
112 cd05854 Ig6_Contactin-2 Sixth 98.3 5.8E-06 1.3E-10 50.6 7.5 31 93-123 1-31 (85)
113 cd05724 Ig2_Robo Second immuno 98.3 6.2E-06 1.3E-10 50.2 7.7 38 84-123 3-41 (86)
114 cd05858 Ig3_FGFR-2 Third immun 98.3 3.2E-06 7E-11 52.2 6.4 34 41-74 55-89 (90)
115 cd05892 Ig_Myotilin_C C-termin 98.3 3.7E-06 8E-11 50.2 6.3 59 95-161 1-60 (75)
116 cd05745 Ig3_Peroxidasin Third 98.3 3.8E-06 8.3E-11 49.9 6.4 31 91-123 1-31 (74)
117 cd05869 Ig5_NCAM-1 Fifth immun 98.3 1.3E-05 2.9E-10 50.2 9.2 43 78-122 3-45 (97)
118 cd05730 Ig3_NCAM-1_like Third 98.3 5.6E-06 1.2E-10 51.6 7.3 36 86-123 12-47 (95)
119 cd05897 Ig2_IL1R2_like Second 98.3 2.3E-06 4.9E-11 53.5 5.3 48 4-63 30-77 (95)
120 cd05859 Ig4_PDGFR-alpha Fourth 98.3 8.1E-06 1.8E-10 51.6 7.7 37 86-124 12-48 (101)
121 cd05870 Ig5_NCAM-2 Fifth immun 98.2 2.2E-05 4.7E-10 49.3 9.3 37 77-116 2-38 (98)
122 cd05758 Ig5_KIRREL3-like Fifth 98.2 1.8E-05 3.8E-10 49.7 8.7 42 81-124 5-47 (98)
123 cd05849 Ig1_Contactin-1 First 98.2 9.1E-06 2E-10 50.6 7.2 43 78-122 2-47 (93)
124 cd05742 Ig1_VEGFR_like First i 98.2 1E-05 2.2E-10 49.3 7.2 34 41-74 49-83 (84)
125 cd05868 Ig4_NrCAM Fourth immun 98.2 7.4E-06 1.6E-10 49.0 6.5 30 92-123 1-30 (76)
126 cd05889 Ig1_DNAM-1_like First 98.2 3.1E-05 6.6E-10 48.5 9.4 43 28-71 48-92 (96)
127 cd04979 Ig_Semaphorin_C Immuno 98.2 8.4E-06 1.8E-10 50.2 6.9 60 4-74 25-86 (89)
128 cd04977 Ig1_NCAM-1_like First 98.2 2.3E-05 5E-10 48.6 8.6 71 83-162 6-77 (92)
129 cd05733 Ig6_L1-CAM_like Sixth 98.2 8.8E-06 1.9E-10 48.8 6.5 49 4-63 13-65 (77)
130 cd05732 Ig5_NCAM-1_like Fifth 98.2 1.8E-05 3.9E-10 49.3 7.9 38 83-122 7-44 (96)
131 cd04983 IgV_TCR_alpha_like Imm 98.2 1.5E-05 3.2E-10 50.9 7.6 61 3-63 27-92 (109)
132 cd05774 Ig_CEACAM_D1 First imm 98.2 3.3E-05 7.2E-10 49.2 9.1 41 27-72 61-101 (105)
133 cd05871 Ig_Semaphorin_classIII 98.2 1.3E-05 2.9E-10 49.7 6.9 63 4-75 25-89 (91)
134 cd05715 Ig_P0-like Immunoglobu 98.2 2.7E-05 5.8E-10 50.4 8.6 36 28-63 67-102 (116)
135 cd05867 Ig4_L1-CAM_like Fourth 98.2 1.2E-05 2.6E-10 48.0 6.4 30 92-123 1-30 (76)
136 cd05893 Ig_Palladin_C C-termin 98.1 1.1E-05 2.3E-10 48.2 6.1 59 95-161 1-60 (75)
137 cd05744 Ig_Myotilin_C_like Imm 98.1 1.5E-05 3.2E-10 47.5 6.7 59 95-161 1-60 (75)
138 smart00406 IGv Immunoglobulin 98.1 1.1E-05 2.3E-10 48.4 5.9 57 4-60 16-81 (81)
139 cd05896 Ig1_IL1RAPL-1_like Fir 98.1 1.6E-05 3.4E-10 50.2 6.6 52 4-63 41-92 (104)
140 cd05875 Ig6_hNeurofascin_like 98.1 3.8E-05 8.3E-10 46.0 8.1 49 4-63 13-65 (77)
141 cd05848 Ig1_Contactin-5 First 98.1 1.6E-05 3.4E-10 49.6 6.6 47 4-63 34-81 (94)
142 cd05754 Ig3_Perlecan_like Thir 98.1 1E-05 2.2E-10 49.4 5.4 30 42-71 53-83 (85)
143 cd04973 Ig1_FGFR First immunog 98.1 2.3E-05 4.9E-10 47.2 6.6 63 85-161 2-64 (79)
144 cd05862 Ig1_VEGFR First immuno 98.1 3.1E-05 6.7E-10 47.4 7.2 35 41-75 50-85 (86)
145 cd05874 Ig6_NrCAM Sixth immuno 98.1 5.8E-05 1.2E-09 45.2 8.1 51 4-65 13-68 (77)
146 cd05885 Ig2_Necl-4 Second immu 98.1 6.1E-05 1.3E-09 45.4 8.1 52 95-153 2-53 (80)
147 cd05739 Ig3_RPTP_IIa_LAR_like 98.1 2.5E-05 5.4E-10 45.8 6.3 29 42-72 39-68 (69)
148 cd05740 Ig_CEACAM_D4 Fourth im 98.1 2.7E-05 5.9E-10 48.2 6.8 35 85-122 11-45 (91)
149 cd05866 Ig1_NCAM-2 First immun 98.0 6E-05 1.3E-09 46.8 8.3 70 83-162 6-76 (92)
150 cd05741 Ig_CEACAM_D1_like Firs 98.0 8.9E-05 1.9E-09 45.7 9.1 56 3-63 15-79 (92)
151 cd05849 Ig1_Contactin-1 First 98.0 2.4E-05 5.2E-10 48.7 6.4 48 4-65 34-83 (93)
152 cd05880 Ig_EVA1 Immunoglobulin 98.0 5.6E-05 1.2E-09 48.9 8.3 35 29-63 67-101 (115)
153 cd05852 Ig5_Contactin-1 Fifth 98.0 1.7E-05 3.7E-10 47.0 5.5 29 92-122 1-29 (73)
154 cd05873 Ig_Sema4D_like Immunog 98.0 4.9E-05 1.1E-09 46.7 7.4 68 84-164 3-70 (87)
155 cd05850 Ig1_Contactin-2 First 98.0 4.3E-05 9.2E-10 47.6 7.2 49 4-65 34-84 (94)
156 cd07702 Ig2_VEGFR-1 Second imm 98.0 2.1E-05 4.5E-10 46.6 5.5 58 95-164 1-58 (72)
157 cd05902 Ig_Neurocan Immunoglob 98.0 7.7E-05 1.7E-09 47.9 8.5 48 28-75 58-107 (110)
158 cd05760 Ig2_PTK7 Second immuno 98.0 4.1E-05 8.9E-10 45.8 6.9 27 95-123 1-27 (77)
159 cd05900 Ig_Aggrecan Immunoglob 98.0 0.00012 2.6E-09 47.1 9.4 73 3-75 28-109 (112)
160 cd05901 Ig_Versican Immunoglob 98.0 0.00021 4.6E-09 46.2 10.5 48 28-75 65-114 (117)
161 cd05727 Ig2_Contactin-2-like S 98.0 1.3E-05 2.9E-10 50.0 4.8 49 4-63 34-82 (96)
162 PF07686 V-set: Immunoglobulin 98.0 5.6E-05 1.2E-09 48.1 7.9 37 27-63 65-101 (114)
163 cd04970 Ig6_Contactin_like Six 98.0 4.2E-05 9.2E-10 46.6 7.0 32 93-124 1-32 (85)
164 cd07693 Ig1_Robo First immunog 98.0 4.8E-05 1E-09 47.4 7.3 28 47-74 70-99 (100)
165 cd05873 Ig_Sema4D_like Immunog 98.0 2.2E-05 4.9E-10 48.2 5.6 46 4-63 25-70 (87)
166 cd05729 Ig2_FGFR_like Second i 98.0 4.2E-05 9.1E-10 46.2 6.8 34 40-73 50-84 (85)
167 cd05753 Ig2_FcgammaR_like Seco 98.0 1.8E-05 3.8E-10 48.2 5.1 22 42-63 49-70 (83)
168 cd05748 Ig_Titin_like Immunogl 98.0 5.2E-05 1.1E-09 44.9 7.0 28 94-123 1-28 (74)
169 cd04978 Ig4_L1-NrCAM_like Four 98.0 2.8E-05 6E-10 46.2 5.7 31 92-124 1-31 (76)
170 cd05874 Ig6_NrCAM Sixth immuno 98.0 2.2E-05 4.8E-10 47.0 5.3 28 95-124 1-28 (77)
171 cd05758 Ig5_KIRREL3-like Fifth 98.0 5.3E-05 1.1E-09 47.5 7.2 61 5-72 33-97 (98)
172 PF00047 ig: Immunoglobulin do 98.0 3.3E-05 7.1E-10 44.2 5.8 49 3-60 16-64 (64)
173 cd05898 Ig5_KIRREL3 Fifth immu 98.0 7.7E-05 1.7E-09 46.9 7.8 43 80-123 4-46 (98)
174 cd00099 IgV Immunoglobulin var 98.0 4.8E-05 1E-09 48.0 6.8 37 27-63 53-89 (105)
175 cd05863 Ig2_VEGFR-3 Second imm 98.0 2.7E-05 5.8E-10 45.4 5.1 51 95-162 1-51 (67)
176 cd05729 Ig2_FGFR_like Second i 98.0 0.00015 3.3E-09 43.7 8.8 35 87-123 4-38 (85)
177 cd05743 Ig_Perlecan_D2_like Im 97.9 6.6E-05 1.4E-09 45.0 6.9 30 92-123 1-30 (78)
178 cd05723 Ig4_Neogenin Fourth im 97.9 7.1E-05 1.5E-09 44.0 7.0 27 95-123 2-28 (71)
179 cd05773 Ig8_hNephrin_like Eigh 97.9 8.8E-05 1.9E-09 47.5 7.8 31 91-123 22-52 (109)
180 cd05856 Ig2_FGFRL1-like Second 97.9 5.6E-05 1.2E-09 45.4 6.3 35 87-123 4-38 (82)
181 cd05882 Ig1_Necl-1 First (N-te 97.9 0.00013 2.8E-09 45.6 8.0 34 85-120 5-38 (95)
182 cd05712 Ig_Siglec_N Immunoglob 97.9 6.7E-05 1.5E-09 48.8 6.9 61 3-63 34-102 (119)
183 cd07690 Ig1_CD4 First immunogl 97.9 4.6E-05 9.9E-10 47.5 5.8 37 27-63 50-87 (94)
184 cd05716 Ig_pIgR Immunoglobulin 97.9 9.9E-05 2.1E-09 46.2 7.4 62 3-64 22-87 (98)
185 cd05739 Ig3_RPTP_IIa_LAR_like 97.9 7.5E-05 1.6E-09 43.7 6.4 29 92-122 1-29 (69)
186 cd05735 Ig8_DSCAM Eight immuno 97.9 9.5E-05 2.1E-09 45.4 7.1 30 92-123 1-30 (88)
187 cd04984 IgV_L_lambda Immunoglo 97.9 7.6E-05 1.6E-09 46.7 6.8 57 4-62 23-84 (98)
188 cd04967 Ig1_Contactin First Ig 97.9 0.00017 3.7E-09 44.5 8.3 44 78-123 2-48 (91)
189 cd05733 Ig6_L1-CAM_like Sixth 97.9 3.8E-05 8.3E-10 45.9 4.8 27 95-123 1-27 (77)
190 cd05763 Ig_1 Subgroup of the i 97.9 6E-05 1.3E-09 44.7 5.5 23 95-119 1-23 (75)
191 cd05753 Ig2_FcgammaR_like Seco 97.8 0.00013 2.9E-09 44.3 7.1 68 82-165 4-71 (83)
192 cd05756 Ig1_IL1R_like First im 97.8 5.8E-05 1.3E-09 47.1 5.5 37 85-121 7-46 (94)
193 cd07706 IgV_TCR_delta Immunogl 97.8 8.6E-05 1.9E-09 48.0 6.6 61 3-63 29-94 (116)
194 cd05861 Ig1_PDGFR-alphabeta Fr 97.8 9.2E-05 2E-09 45.1 6.2 34 41-74 46-82 (84)
195 cd04976 Ig2_VEGFR Second immun 97.8 5.1E-05 1.1E-09 44.7 4.9 27 95-123 1-27 (71)
196 cd05752 Ig1_FcgammaR_like Frst 97.8 4.3E-05 9.3E-10 45.9 4.6 21 42-63 48-68 (78)
197 cd07700 IgV_CD8_beta Immunoglo 97.8 0.00015 3.2E-09 46.3 7.3 36 27-62 58-93 (107)
198 cd04969 Ig5_Contactin_like Fif 97.8 0.0001 2.2E-09 43.5 6.2 30 92-123 1-30 (73)
199 PHA02826 IL-1 receptor-like pr 97.8 6.7E-05 1.4E-09 54.4 6.3 48 3-63 163-210 (227)
200 cd05755 Ig2_ICAM-1_like Second 97.8 0.0003 6.4E-09 44.3 8.4 74 81-161 5-81 (100)
201 cd04982 IgV_TCR_gamma Immunogl 97.8 0.00013 2.7E-09 47.2 7.0 36 27-62 63-98 (116)
202 cd05883 Ig2_Necl-2 Second immu 97.8 0.00016 3.5E-09 43.8 6.8 53 95-153 2-54 (82)
203 cd05899 IgV_TCR_beta Immunoglo 97.8 0.00015 3.2E-09 46.4 6.8 36 27-63 59-94 (110)
204 cd04971 Ig_TrKABC_d5 Fifth dom 97.8 0.00014 3.1E-09 44.0 6.2 27 96-124 2-28 (81)
205 cd04967 Ig1_Contactin First Ig 97.8 0.00011 2.4E-09 45.4 5.8 47 4-63 34-81 (91)
206 cd05853 Ig6_Contactin-4 Sixth 97.8 0.00017 3.7E-09 44.1 6.5 31 93-123 1-31 (85)
207 cd05761 Ig2_Necl-1-4_like Seco 97.8 0.00029 6.3E-09 42.6 7.5 61 95-160 2-63 (82)
208 cd05875 Ig6_hNeurofascin_like 97.7 0.00012 2.6E-09 43.8 5.7 27 95-123 1-27 (77)
209 cd05746 Ig4_Peroxidasin Fourth 97.7 8E-05 1.7E-09 43.5 4.8 27 95-123 1-27 (69)
210 cd05738 Ig2_RPTP_IIa_LAR_like 97.7 5.8E-05 1.3E-09 44.7 4.2 26 95-122 1-26 (74)
211 cd04974 Ig3_FGFR Third immunog 97.7 0.00024 5.1E-09 43.8 7.1 24 92-117 1-24 (90)
212 smart00409 IG Immunoglobulin. 97.7 0.00048 1E-08 40.8 8.3 61 3-73 23-84 (86)
213 smart00410 IG_like Immunoglobu 97.7 0.00048 1E-08 40.8 8.3 61 3-73 23-84 (86)
214 cd05750 Ig_Pro_neuregulin Immu 97.7 0.00018 3.9E-09 42.4 6.3 28 95-124 1-29 (75)
215 cd04980 IgV_L_kappa Immunoglob 97.7 0.00013 2.9E-09 46.3 6.0 59 3-63 30-93 (106)
216 cd05884 Ig2_Necl-3 Second immu 97.7 0.00047 1E-08 41.9 8.0 63 95-161 2-65 (83)
217 cd05864 Ig2_VEGFR-2 Second imm 97.7 9.5E-05 2.1E-09 43.5 4.7 26 96-123 2-27 (70)
218 cd05722 Ig1_Neogenin First imm 97.7 0.00042 9.2E-09 43.0 7.8 48 4-63 29-81 (95)
219 cd04979 Ig_Semaphorin_C Immuno 97.7 0.00019 4.1E-09 44.0 5.9 66 85-162 4-71 (89)
220 cd05757 Ig2_IL1R_like Second i 97.7 0.00015 3.3E-09 45.0 5.4 66 87-163 5-73 (92)
221 cd05765 Ig_3 Subgroup of the i 97.7 0.00023 4.9E-09 42.7 6.1 24 92-117 1-24 (81)
222 cd05759 Ig2_KIRREL3-like Secon 97.7 0.00078 1.7E-08 40.6 8.4 27 95-122 2-28 (82)
223 smart00408 IGc2 Immunoglobulin 97.6 0.00025 5.4E-09 39.6 5.8 22 42-63 40-61 (63)
224 PHA02987 Ig domain OX-2-like p 97.6 0.0008 1.7E-08 46.8 9.1 73 3-77 45-124 (189)
225 cd05855 Ig_TrkB_d5 Fifth domai 97.6 0.00032 6.9E-09 42.2 6.4 26 97-124 3-28 (79)
226 cd05895 Ig_Pro_neuregulin-1 Im 97.6 0.00032 6.9E-09 41.7 6.2 28 95-123 1-28 (76)
227 cd07701 Ig1_Necl-3 First (N-te 97.6 0.00039 8.5E-09 43.3 6.9 32 84-117 4-35 (95)
228 cd05759 Ig2_KIRREL3-like Secon 97.6 0.00057 1.2E-08 41.2 7.3 22 42-63 47-68 (82)
229 cd07705 Ig2_Necl-1 Second immu 97.6 0.0011 2.5E-08 40.2 8.6 63 95-161 2-65 (83)
230 cd05858 Ig3_FGFR-2 Third immun 97.6 0.00046 1E-08 42.4 6.9 23 92-116 1-23 (90)
231 cd05754 Ig3_Perlecan_like Thir 97.6 0.00042 9E-09 42.1 6.5 66 83-162 7-72 (85)
232 cd05727 Ig2_Contactin-2-like S 97.6 0.00044 9.4E-09 43.2 6.4 69 86-162 12-80 (96)
233 cd05885 Ig2_Necl-4 Second immu 97.5 0.00065 1.4E-08 41.0 6.7 51 4-63 15-65 (80)
234 cd05772 IgC_SIRP Signal-regula 97.5 0.0014 3E-08 42.1 8.6 65 86-153 15-79 (111)
235 cd05720 Ig_CD8_alpha Immunoglo 97.5 0.00042 9.2E-09 43.9 6.2 34 27-62 57-90 (104)
236 cd00098 IgC Immunoglobulin Con 97.5 0.00035 7.6E-09 43.2 5.8 70 90-161 11-81 (95)
237 cd05876 Ig3_L1-CAM Third immun 97.5 0.00024 5.1E-09 41.7 4.6 26 95-122 1-26 (71)
238 cd05845 Ig2_L1-CAM_like Second 97.5 0.00013 2.8E-09 45.5 3.5 47 4-63 34-81 (95)
239 cd05872 Ig_Sema4B_like Immunog 97.5 0.00069 1.5E-08 41.4 6.5 47 3-64 24-70 (85)
240 cd04981 IgV_H Immunoglobulin ( 97.5 0.00071 1.5E-08 43.9 6.9 36 27-62 62-97 (117)
241 cd07698 IgC_MHC_I_alpha3 Class 97.5 0.001 2.2E-08 41.3 7.4 66 92-160 14-80 (93)
242 cd05764 Ig_2 Subgroup of the i 97.5 0.001 2.2E-08 39.2 7.0 29 92-122 1-30 (74)
243 cd05749 Ig2_Tyro3_like Second 97.4 0.00036 7.7E-09 42.2 4.8 20 42-63 50-69 (81)
244 cd05736 Ig2_Follistatin_like S 97.4 0.00064 1.4E-08 40.3 5.8 27 95-123 1-27 (76)
245 cd05725 Ig3_Robo Third immunog 97.4 0.00037 7.9E-09 40.5 4.6 25 95-121 1-25 (69)
246 PF08205 C2-set_2: CD80-like C 97.4 0.00036 7.9E-09 42.7 4.7 58 92-153 14-71 (89)
247 cd05768 IgC_CH4 CH4 domain (fo 97.4 0.00085 1.8E-08 42.5 6.4 35 88-122 12-46 (102)
248 cd05898 Ig5_KIRREL3 Fifth immu 97.4 0.0012 2.6E-08 41.4 7.0 45 28-72 49-97 (98)
249 KOG3515|consensus 97.4 0.0015 3.2E-08 54.5 8.9 125 42-166 60-187 (741)
250 cd05726 Ig4_Robo Fhird immunog 97.4 0.00082 1.8E-08 41.3 5.9 27 92-120 1-27 (90)
251 cd05766 IgC_MHC_II_beta Class 97.4 0.0017 3.7E-08 40.4 7.3 34 90-123 12-45 (94)
252 cd07697 IgC_TCR_gamma T cell r 97.4 0.0019 4.1E-08 40.4 7.5 68 89-159 13-81 (96)
253 cd05767 IgC_MHC_II_alpha Class 97.3 0.0032 7E-08 39.2 8.0 33 91-123 14-46 (94)
254 smart00408 IGc2 Immunoglobulin 97.3 0.0019 4E-08 35.9 6.5 29 91-121 1-29 (63)
255 cd05731 Ig3_L1-CAM_like Third 97.3 0.0007 1.5E-08 39.4 4.8 26 95-122 1-26 (71)
256 cd07699 IgC_L Immunoglobulin C 97.3 0.00086 1.9E-08 42.3 5.4 35 88-122 13-47 (100)
257 cd05742 Ig1_VEGFR_like First i 97.3 0.00095 2.1E-08 40.4 5.5 29 92-120 1-29 (84)
258 PHA03269 envelope glycoprotein 97.3 0.0063 1.4E-07 48.1 10.8 93 28-122 276-373 (566)
259 cd05897 Ig2_IL1R2_like Second 97.2 0.0015 3.2E-08 40.8 5.9 70 87-164 5-77 (95)
260 PF00047 ig: Immunoglobulin do 97.2 0.00062 1.3E-08 38.8 3.9 62 92-160 1-63 (64)
261 cd05769 IgC_TCR_beta T cell re 97.2 0.0019 4.2E-08 41.7 6.5 62 88-151 14-76 (115)
262 smart00407 IGc1 Immunoglobulin 97.2 0.003 6.4E-08 37.5 6.8 27 95-121 2-28 (75)
263 cd05770 IgC_beta2m Class I maj 97.2 0.0032 6.8E-08 39.1 7.1 32 90-121 13-44 (93)
264 cd07690 Ig1_CD4 First immunogl 97.2 0.0029 6.2E-08 39.4 6.9 31 87-119 2-32 (94)
265 cd05872 Ig_Sema4B_like Immunog 97.2 0.0023 4.9E-08 39.1 6.1 68 85-167 4-71 (85)
266 cd05847 IgC_CH2_IgE CH2 domain 97.1 0.0037 8.1E-08 38.9 7.1 32 91-122 13-44 (94)
267 PF13895 Ig_2: Immunoglobulin 97.1 0.006 1.3E-07 35.9 7.6 33 87-121 9-41 (80)
268 smart00410 IG_like Immunoglobu 97.1 0.016 3.5E-07 34.0 9.6 34 86-121 3-37 (86)
269 smart00409 IG Immunoglobulin. 97.1 0.016 3.5E-07 34.0 9.6 34 86-121 3-37 (86)
270 PF13895 Ig_2: Immunoglobulin 97.1 0.0013 2.8E-08 38.9 4.6 21 43-63 47-67 (80)
271 cd04985 IgC_CH1 CH1 domain (fi 97.1 0.005 1.1E-07 38.4 7.1 29 91-119 15-43 (95)
272 PHA02633 hypothetical protein; 97.0 0.0019 4.2E-08 36.5 4.3 34 42-75 19-53 (63)
273 PHA03273 envelope glycoprotein 97.0 0.015 3.2E-07 45.8 10.4 110 41-153 198-311 (486)
274 cd05845 Ig2_L1-CAM_like Second 97.0 0.0058 1.3E-07 38.1 6.8 33 85-119 11-44 (95)
275 cd05711 Ig_FcalphaRI Immunoglo 97.0 0.0052 1.1E-07 38.2 6.5 76 81-166 4-79 (94)
276 cd05717 Ig1_Necl-1-3_like Firs 96.9 0.0084 1.8E-07 37.1 7.4 31 84-116 4-34 (95)
277 PF07654 C1-set: Immunoglobuli 96.9 0.0041 8.9E-08 37.6 5.8 68 91-160 7-74 (83)
278 cd05871 Ig_Semaphorin_classIII 96.9 0.0043 9.2E-08 38.3 5.9 64 87-162 6-73 (91)
279 cd05861 Ig1_PDGFR-alphabeta Fr 96.9 0.0085 1.8E-07 36.3 7.1 26 92-119 1-26 (84)
280 cd05860 Ig4_SCFR Fourth immuno 96.9 0.0078 1.7E-07 37.9 6.8 34 42-75 66-100 (101)
281 PF13927 Ig_3: Immunoglobulin 96.9 0.0036 7.8E-08 36.3 5.1 21 42-62 55-75 (75)
282 PHA03271 envelope glycoprotein 96.9 0.033 7.1E-07 43.4 11.1 93 29-124 195-293 (490)
283 cd00098 IgC Immunoglobulin Con 96.8 0.0032 7E-08 38.8 5.0 54 3-63 29-84 (95)
284 cd07696 IgC_CH3 CH3 domain (th 96.8 0.0044 9.6E-08 38.7 5.5 32 87-118 9-41 (96)
285 cd05734 Ig7_DSCAM Seventh immu 96.8 0.0033 7.2E-08 37.5 4.4 21 95-117 1-21 (79)
286 PHA03270 envelope glycoprotein 96.7 0.031 6.6E-07 43.8 10.2 108 42-153 183-294 (466)
287 KOG3515|consensus 96.7 0.0027 5.9E-08 53.0 4.6 81 42-123 164-251 (741)
288 PF13927 Ig_3: Immunoglobulin 96.7 0.024 5.1E-07 32.7 7.5 35 78-114 2-36 (75)
289 cd05751 Ig1_LILRB1_like First 96.6 0.0099 2.2E-07 36.6 6.0 67 84-163 8-74 (91)
290 cd05721 IgV_CTLA-4 Immunoglobu 96.6 0.012 2.6E-07 37.9 6.4 59 4-62 31-95 (115)
291 cd00096 Ig Immunoglobulin doma 96.4 0.019 4E-07 31.9 5.8 25 39-63 41-65 (74)
292 cd05899 IgV_TCR_beta Immunoglo 96.4 0.028 6E-07 35.8 7.0 31 83-116 4-34 (110)
293 cd04983 IgV_TCR_alpha_like Imm 96.3 0.024 5.3E-07 35.8 6.6 32 83-116 4-35 (109)
294 cd05751 Ig1_LILRB1_like First 96.3 0.017 3.6E-07 35.6 5.5 23 41-63 53-75 (91)
295 cd05715 Ig_P0-like Immunoglobu 96.3 0.074 1.6E-06 34.2 8.7 33 83-115 4-38 (116)
296 cd05883 Ig2_Necl-2 Second immu 96.2 0.068 1.5E-06 32.4 7.7 22 42-63 45-66 (82)
297 cd05881 Ig1_Necl-2 First (N-te 96.2 0.066 1.4E-06 33.3 7.9 33 85-119 5-37 (95)
298 cd05860 Ig4_SCFR Fourth immuno 96.2 0.079 1.7E-06 33.4 8.1 39 85-125 11-50 (101)
299 cd04986 IgC_CH2 CH2 domain (se 96.2 0.027 5.8E-07 35.4 5.9 32 88-119 15-47 (99)
300 cd05878 Ig_Aggrecan_like Immun 96.2 0.069 1.5E-06 34.1 8.0 76 91-166 1-96 (110)
301 cd05761 Ig2_Necl-1-4_like Seco 96.1 0.058 1.3E-06 32.4 7.1 22 42-63 46-67 (82)
302 cd05880 Ig_EVA1 Immunoglobulin 96.0 0.16 3.5E-06 32.6 9.3 80 83-162 4-99 (115)
303 cd05862 Ig1_VEGFR First immuno 95.9 0.066 1.4E-06 32.5 6.9 28 92-119 1-28 (86)
304 cd04982 IgV_TCR_gamma Immunogl 95.9 0.075 1.6E-06 34.0 7.5 33 84-116 5-37 (116)
305 cd07704 Ig2_Nectin-3-4_like Se 95.9 0.054 1.2E-06 33.9 6.4 32 85-117 9-41 (97)
306 cd05877 Ig_LP_like Immunoglobu 95.8 0.1 2.2E-06 32.8 7.5 73 91-163 1-89 (106)
307 cd05719 Ig2_PVR_like Second im 95.8 0.072 1.6E-06 33.2 6.6 24 92-116 15-38 (95)
308 PHA02987 Ig domain OX-2-like p 95.6 0.074 1.6E-06 37.2 6.7 76 86-162 24-105 (189)
309 cd07694 Ig2_CD4 Second immunog 95.6 0.072 1.6E-06 32.6 5.8 33 42-74 52-85 (88)
310 cd05879 Ig_P0 Immunoglobulin ( 95.6 0.097 2.1E-06 33.9 6.9 32 83-114 4-37 (116)
311 cd00099 IgV Immunoglobulin var 95.6 0.083 1.8E-06 32.9 6.5 28 88-116 2-29 (105)
312 smart00407 IGc1 Immunoglobulin 95.6 0.094 2E-06 30.9 6.3 55 2-63 14-70 (75)
313 cd07705 Ig2_Necl-1 Second immu 95.5 0.13 2.9E-06 31.0 7.0 22 42-63 47-68 (83)
314 cd04980 IgV_L_kappa Immunoglob 95.5 0.15 3.3E-06 32.1 7.6 33 83-116 6-38 (106)
315 cd05711 Ig_FcalphaRI Immunoglo 95.5 0.071 1.5E-06 33.0 5.9 21 42-62 56-76 (94)
316 cd05900 Ig_Aggrecan Immunoglob 95.5 0.21 4.5E-06 32.1 8.1 72 91-163 1-95 (112)
317 PHA02982 hypothetical protein; 95.4 0.55 1.2E-05 33.5 10.5 72 42-120 101-174 (251)
318 cd05714 Ig_CSPGs_LP Immunoglob 95.4 0.18 3.8E-06 31.7 7.7 73 91-163 1-89 (106)
319 cd07703 Ig2_Nectin-2_like Seco 95.1 0.14 2.9E-06 31.9 6.2 22 94-116 17-38 (95)
320 cd05884 Ig2_Necl-3 Second immu 94.9 0.17 3.7E-06 30.5 6.1 52 4-63 15-68 (83)
321 cd07706 IgV_TCR_delta Immunogl 94.8 0.25 5.4E-06 31.6 7.1 33 83-116 5-37 (116)
322 PHA02914 Immunoglobulin-like d 94.7 0.25 5.3E-06 38.6 7.7 76 42-124 347-425 (500)
323 PHA03052 Hypothetical protein; 94.6 0.39 8.4E-06 27.7 6.6 40 85-124 5-45 (69)
324 cd05847 IgC_CH2_IgE CH2 domain 94.6 0.28 6.1E-06 30.4 6.7 55 2-63 29-85 (94)
325 cd07691 Ig_CD3_gamma_delta Imm 94.6 0.1 2.2E-06 30.3 4.2 21 42-62 34-54 (69)
326 PF11465 Receptor_2B4: Natural 94.2 0.62 1.3E-05 29.5 7.5 34 28-65 62-96 (108)
327 cd07699 IgC_L Immunoglobulin C 94.1 0.3 6.6E-06 30.6 6.1 55 2-63 32-88 (100)
328 cd05896 Ig1_IL1RAPL-1_like Fir 93.9 0.31 6.8E-06 30.8 5.7 36 87-122 10-54 (104)
329 cd07698 IgC_MHC_I_alpha3 Class 93.7 0.67 1.4E-05 28.5 7.1 13 51-63 70-82 (93)
330 cd05712 Ig_Siglec_N Immunoglob 93.7 0.61 1.3E-05 30.1 7.2 34 83-116 5-42 (119)
331 cd05901 Ig_Versican Immunoglob 93.4 1.4 2.9E-05 28.6 8.4 73 92-164 2-101 (117)
332 cd05771 IgC_Tapasin_R Tapasin- 93.4 0.77 1.7E-05 30.4 7.5 22 42-63 109-130 (139)
333 cd05902 Ig_Neurocan Immunoglob 93.3 1.1 2.4E-05 28.7 7.7 74 91-164 1-94 (110)
334 cd05772 IgC_SIRP Signal-regula 93.2 1.3 2.7E-05 28.4 7.9 52 3-63 37-91 (111)
335 cd05767 IgC_MHC_II_alpha Class 93.2 0.88 1.9E-05 28.2 7.0 52 2-63 30-83 (94)
336 PF07654 C1-set: Immunoglobuli 93.2 0.26 5.6E-06 29.5 4.5 52 2-63 23-76 (83)
337 cd05846 Ig1_MRC-OX-2_like Firs 93.2 1.1 2.3E-05 27.7 7.4 24 92-116 1-24 (97)
338 cd05716 Ig_pIgR Immunoglobulin 93.0 0.46 1E-05 29.3 5.6 30 87-117 2-31 (98)
339 cd05713 Ig_MOG_like Immunoglob 93.0 1.2 2.7E-05 27.4 7.6 26 92-117 1-27 (100)
340 PF08204 V-set_CD47: CD47 immu 92.9 0.1 2.2E-06 34.4 2.5 72 2-76 45-121 (130)
341 cd07696 IgC_CH3 CH3 domain (th 92.9 1.1 2.3E-05 27.9 7.0 54 2-63 30-85 (96)
342 PF07686 V-set: Immunoglobulin 92.8 0.59 1.3E-05 29.1 6.0 31 84-115 8-38 (114)
343 cd05775 Ig_SLAM-CD84_like_N N- 92.6 0.35 7.7E-06 30.0 4.7 73 91-164 3-83 (97)
344 cd05770 IgC_beta2m Class I maj 92.6 0.45 9.7E-06 29.5 5.0 51 2-63 30-82 (93)
345 cd05741 Ig_CEACAM_D1_like Firs 92.6 0.44 9.6E-06 28.8 5.0 71 92-164 1-79 (92)
346 cd05766 IgC_MHC_II_beta Class 92.3 1.4 3E-05 27.2 7.0 52 2-63 29-82 (94)
347 cd05889 Ig1_DNAM-1_like First 91.4 1.3 2.8E-05 27.6 6.1 67 93-160 1-78 (96)
348 PF07354 Sp38: Zona-pellucida- 91.4 0.29 6.3E-06 36.1 3.6 33 26-63 27-59 (271)
349 cd05774 Ig_CEACAM_D1 First imm 91.4 1.3 2.8E-05 28.1 6.2 74 87-162 8-90 (105)
350 cd04985 IgC_CH1 CH1 domain (fi 91.4 0.84 1.8E-05 28.3 5.3 54 2-63 31-86 (95)
351 cd07694 Ig2_CD4 Second immunog 91.1 0.58 1.2E-05 28.7 4.2 32 85-116 7-38 (88)
352 cd00096 Ig Immunoglobulin doma 90.8 1.6 3.4E-05 23.6 6.2 27 95-123 1-27 (74)
353 cd04984 IgV_L_lambda Immunoglo 90.8 0.41 8.9E-06 29.6 3.5 29 88-116 2-30 (98)
354 cd07700 IgV_CD8_beta Immunoglo 90.8 0.59 1.3E-05 29.5 4.3 28 88-116 2-29 (107)
355 cd04981 IgV_H Immunoglobulin ( 90.4 0.89 1.9E-05 29.3 4.9 34 83-116 3-36 (117)
356 PHA02914 Immunoglobulin-like d 90.2 7.9 0.00017 30.6 10.8 81 38-121 78-159 (500)
357 cd07697 IgC_TCR_gamma T cell r 90.1 1.2 2.5E-05 27.8 5.1 53 2-63 31-84 (96)
358 cd05718 Ig1_PVR_like First imm 89.6 1.9 4.1E-05 26.3 5.9 25 93-117 1-26 (98)
359 cd05755 Ig2_ICAM-1_like Second 89.4 2.3 4.9E-05 26.7 6.0 22 42-63 63-84 (100)
360 cd05721 IgV_CTLA-4 Immunoglobu 89.0 1.2 2.6E-05 28.8 4.5 33 84-116 5-38 (115)
361 cd04986 IgC_CH2 CH2 domain (se 88.8 1.9 4.1E-05 27.1 5.3 54 2-63 35-88 (99)
362 cd05768 IgC_CH4 CH4 domain (fo 88.6 1.2 2.7E-05 27.9 4.5 22 42-63 69-90 (102)
363 cd05888 Ig1_Nectin-4_like Frst 88.0 3.7 8.1E-05 25.4 6.4 23 94-116 2-25 (100)
364 cd05769 IgC_TCR_beta T cell re 87.6 3.2 6.9E-05 26.8 5.9 22 42-63 69-91 (115)
365 cd07703 Ig2_Nectin-2_like Seco 87.0 5.4 0.00012 24.7 7.3 22 42-63 60-81 (95)
366 cd05887 Ig1_Nectin-3_like Firs 86.7 4.1 8.8E-05 25.3 5.9 23 93-116 1-23 (96)
367 cd05886 Ig1_Nectin-1_like Firs 84.6 7.6 0.00016 24.2 7.2 67 94-160 2-81 (99)
368 cd05720 Ig_CD8_alpha Immunoglo 84.3 1.9 4.1E-05 27.0 3.6 27 88-116 2-28 (104)
369 KOG1480|consensus 81.1 0.62 1.3E-05 39.4 0.6 22 42-63 184-205 (909)
370 cd07689 Ig2_VCAM-1 Second immu 81.0 3.4 7.3E-05 25.9 3.7 33 89-121 12-45 (99)
371 cd05719 Ig2_PVR_like Second im 80.8 11 0.00023 23.3 7.6 22 42-63 60-81 (95)
372 PHA03042 CD47-like protein; Pr 76.8 21 0.00045 26.8 7.2 32 42-74 72-104 (286)
373 PHA02865 MHC-like TNF binding 76.8 15 0.00033 28.4 6.8 23 94-116 216-238 (338)
374 PF06328 Lep_receptor_Ig: Ig-l 75.7 8.2 0.00018 23.6 4.3 41 83-123 9-52 (89)
375 cd07692 Ig_CD3_epsilon Immunog 74.7 2.3 5.1E-05 24.4 1.6 26 91-121 6-31 (65)
376 PHA03376 BARF1; Provisional 74.4 29 0.00062 24.8 7.8 31 86-116 20-51 (221)
377 PHA03282 envelope glycoprotein 74.3 8.7 0.00019 31.0 5.1 34 39-72 331-364 (540)
378 PF05790 C2-set: Immunoglobuli 73.5 17 0.00037 21.8 5.5 22 42-63 44-66 (80)
379 PF08205 C2-set_2: CD80-like C 70.9 19 0.00042 21.3 7.9 53 4-63 30-83 (89)
380 cd05890 Ig2_Nectin-1_like Seco 67.0 20 0.00044 22.4 4.5 20 95-115 23-42 (98)
381 PHA03286 envelope glycoprotein 62.4 21 0.00045 28.8 4.9 33 42-74 308-340 (492)
382 PHA03283 envelope glycoprotein 58.8 26 0.00057 28.8 5.0 33 39-71 313-345 (542)
383 PF02480 Herpes_gE: Alphaherpe 56.9 15 0.00032 29.7 3.4 33 39-71 267-299 (439)
384 PHA03281 envelope glycoprotein 47.6 50 0.0011 27.4 5.0 33 40-72 474-506 (642)
385 PHA03282 envelope glycoprotein 47.3 59 0.0013 26.5 5.3 31 27-63 116-146 (540)
386 PF01688 Herpes_gI: Alphaherpe 38.5 1.3E+02 0.0029 20.7 5.4 25 39-63 122-146 (161)
387 PF06214 SLAM: Signaling lymph 35.0 49 0.0011 21.3 2.6 30 27-60 93-122 (126)
388 PHA03269 envelope glycoprotein 34.9 2.7E+02 0.0057 23.2 10.9 22 98-119 449-470 (566)
389 KOG3611|consensus 32.8 77 0.0017 27.6 4.2 22 42-63 613-634 (737)
390 PHA03290 envelope glycoprotein 29.6 2E+02 0.0044 22.4 5.5 25 39-63 127-151 (357)
391 PHA03240 envelope glycoprotein 27.3 1.2E+02 0.0027 22.0 3.8 19 42-60 106-124 (258)
392 KOG4597|consensus 26.7 67 0.0015 26.3 2.7 34 40-73 256-290 (560)
393 COG5475 Uncharacterized small 26.6 1.3E+02 0.0027 16.8 3.5 20 42-63 19-38 (60)
394 COG2904 Uncharacterized protei 25.0 40 0.00087 22.1 1.0 23 146-168 78-100 (137)
395 PHA03112 IL-18 binding protein 24.3 1.2E+02 0.0027 20.3 3.2 29 89-117 35-63 (141)
396 PF03921 ICAM_N: Intercellular 23.9 95 0.0021 19.1 2.5 21 82-102 8-28 (91)
397 PHA03292 envelope glycoprotein 21.8 3.1E+02 0.0067 21.9 5.3 24 40-63 127-150 (413)
No 1
>KOG3513|consensus
Probab=99.60 E-value=3e-14 Score=118.65 Aligned_cols=105 Identities=25% Similarity=0.343 Sum_probs=85.8
Q ss_pred EEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEeccceeeec
Q psy1826 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVEPITQIIG 83 (169)
Q Consensus 5 ~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~ 83 (169)
+|.|.|.++. .+. .|.....-.+ .|.|.+++.+|+|.|+|.+.|. +...+.+++.|..+|.++..
T Consensus 272 ~i~W~k~~g~-~~~---------~r~~~~~~~~----vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~ 337 (1051)
T KOG3513|consen 272 QIKWRKVDGK-PPP---------RRATYSNYGK----VLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQK 337 (1051)
T ss_pred cEEEEeCCCC-CCC---------cceeeecccc----EEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcc
Confidence 6899998752 211 2333122223 8999999999999999999999 88888999999999998888
Q ss_pred CCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccc
Q psy1826 84 GPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLM 125 (169)
Q Consensus 84 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~ 125 (169)
+.+..+..|+++.|.|.+.|. |.|.++|++||.++.....
T Consensus 338 ~~d~~~~~gs~v~~eC~a~g~--P~p~v~WlkNg~pl~~~~r 377 (1051)
T KOG3513|consen 338 PQDTEADTGSNVTLECKASGK--PNPTVKWLKNGEPLEPAER 377 (1051)
T ss_pred cceeEecCCCCeEEEEEecCC--CCCceEEeeCCeecCccCC
Confidence 889999999999999999996 4569999999999985443
No 2
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.57 E-value=3e-13 Score=97.60 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=77.0
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEeccceeeecCCcEEEcCCCcEEEEEEeecCC---CCCCeeEEEECC
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSP---EPPPAIYWLHNT 117 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p---~p~~~i~W~~~~ 117 (169)
.|.|.+++.+|+|.|.|.+.|. +.....+.|.|..++ ....+.+|+.+.|.|.+.+.+ .|.|.++|++++
T Consensus 99 ~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng 172 (227)
T PHA02826 99 NLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNG 172 (227)
T ss_pred eEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECC
Confidence 8999999999999999999997 555556666664321 245677899999999986432 256899999999
Q ss_pred EEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEeeeee
Q psy1826 118 EVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAGTYT 164 (169)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (169)
.++..+...... ...+.+. +..+.++|.+.|.+...+.
T Consensus 173 ~~l~~~~r~~~~---~~~~~L~------I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 173 NIVLYTDRIQLR---NNNSTLV------IKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred EECCCCCCEEEe---CCCCEEE------ECcCCHHhCEEEEEEEEEe
Confidence 998754321111 0111222 5667788888888888875
No 3
>KOG3513|consensus
Probab=99.54 E-value=2.3e-13 Score=113.42 Aligned_cols=110 Identities=22% Similarity=0.384 Sum_probs=94.3
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEeccceeee
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVEPITQII 82 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~ 82 (169)
..+.|.|.+. ..+ .++|+. +..++ +|.|.+++.+|+|.|+|.|.|. +.....+.|.|..++.+..
T Consensus 456 p~~~W~k~~~-~~~--------~~~r~~-i~edG----tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~ 521 (1051)
T KOG3513|consen 456 PKVSWLKGGE-KLL--------QSGRIR-ILEDG----TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITL 521 (1051)
T ss_pred ceEEEEcCCc-ccc--------cCceEE-ECCCC----cEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEe
Confidence 4688998774 333 336777 56677 9999999999999999999999 9999999999999999888
Q ss_pred cCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccc
Q psy1826 83 GGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQR 127 (169)
Q Consensus 83 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~ 127 (169)
.+....+..|..+.|.|.+...+.....+.|.+||.++.+.....
T Consensus 522 ~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~ 566 (1051)
T KOG3513|consen 522 APSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGD 566 (1051)
T ss_pred ccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCC
Confidence 888888999999999999998877888999999999998875543
No 4
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.51 E-value=6e-13 Score=89.29 Aligned_cols=78 Identities=22% Similarity=0.226 Sum_probs=64.0
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEeccceeeecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~ 119 (169)
+|.|.+++.+|+|.|.|.+.+. +.....+.|.|..+|.+...+......+|+.+.|.|.+.+...+++.+.|+++|..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 7999999999999999999887 66777889999988876655555555578999999999997323369999998854
No 5
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.42 E-value=2.4e-11 Score=92.40 Aligned_cols=82 Identities=17% Similarity=0.324 Sum_probs=61.6
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCce----EEEEEEEec--cceeeecCCcEEEcCCCcEEEEEEeecCCCC-CCeeEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIG----ISMYLSVVE--PITQIIGGPDMYINKGSTMNLTCVIKHSPEP-PPAIYW 113 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~----~~~~l~v~~--~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~p-~~~i~W 113 (169)
.|.|.+++.+|+|.|.|.+.+. +... ..+.|.|.. .|+.+..+....+..|+.+.|.|.+.+.|.| .+.+.|
T Consensus 178 ~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W 257 (326)
T PHA02785 178 IITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFW 257 (326)
T ss_pred eEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEE
Confidence 8999999999999999999986 4322 234455542 2333445567788899999999999997642 268999
Q ss_pred EECCEEeecc
Q psy1826 114 LHNTEVSQLN 123 (169)
Q Consensus 114 ~~~~~~~~~~ 123 (169)
++||.++...
T Consensus 258 ~kng~~i~~~ 267 (326)
T PHA02785 258 ISNGMYYEED 267 (326)
T ss_pred EECCEECCCc
Confidence 9999988643
No 6
>KOG4194|consensus
Probab=99.41 E-value=1.8e-12 Score=102.48 Aligned_cols=113 Identities=19% Similarity=0.389 Sum_probs=88.6
Q ss_pred EEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEeccceeeec
Q psy1826 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVEPITQIIG 83 (169)
Q Consensus 5 ~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~ 83 (169)
+|.|.|+|+...+.. ...|.....+.. .+.|.+|+.+|+|.|.|.|.|. +..+..+.|.|...|.+..+
T Consensus 643 eIawqkdggtdFPAA------~eRRl~Vmpedd----~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~P 712 (873)
T KOG4194|consen 643 EIAWQKDGGTDFPAA------RERRLHVMPEDD----VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIP 712 (873)
T ss_pred ceeehhcCCCCCchh------hhheeeecCCCC----EEEEecccccccceeEEeeeccccceeeceEEEEecCCccccc
Confidence 688988875322222 113444334333 7889999999999999999998 88999999999999887776
Q ss_pred CCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccce
Q psy1826 84 GPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRE 128 (169)
Q Consensus 84 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~ 128 (169)
-....|..|+++.|+|.+.+.| +.|.+.|+++.+|+........
T Consensus 713 L~~~~V~~get~vlqC~a~~~~-a~pr~~W~k~d~pil~t~rh~f 756 (873)
T KOG4194|consen 713 LEDQLVVVGETLVLQCLAEGAP-ADPRLEWFKEDKPILITERHTF 756 (873)
T ss_pred ccceEEEecceEEEEEecCCCC-CCccccccCCCCceEEeecccC
Confidence 6778889999999999999975 4589999999999887664443
No 7
>KOG4221|consensus
Probab=99.35 E-value=5.9e-12 Score=105.59 Aligned_cols=108 Identities=19% Similarity=0.393 Sum_probs=85.8
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEeccceeee
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVEPITQII 82 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~ 82 (169)
-+|.|.|++. .+.... .|+. +...+ +|.|.+++..|+|.|+|+|.|. -...+.+.|+|..+|.++.
T Consensus 267 p~v~Wlrng~--~i~~ds------~riv-l~g~~----slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~ 333 (1381)
T KOG4221|consen 267 PSVKWLRNGE--KISVDS------YRIV-LVGGS----SLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTK 333 (1381)
T ss_pred CceEEeeCCe--eeeecc------eEEE-Eeccc----ceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCC
Confidence 4789999763 333321 3555 33344 8999999999999999999996 4566677889999999898
Q ss_pred cCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeeccccc
Q psy1826 83 GGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQ 126 (169)
Q Consensus 83 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~ 126 (169)
.+..+...++..+.|.|.+.|. |.|.+.|++||..+..++.+
T Consensus 334 ~p~~l~A~e~~die~ec~~~g~--p~p~v~w~kNgd~~ipsdy~ 375 (1381)
T KOG4221|consen 334 APTTLVAHESMDIEFECPVSGK--PIPTVRWYKNGDRIIPSDYF 375 (1381)
T ss_pred CCcceeeeeccceeEeCCCCCC--CcceEEEEecCcccCcccce
Confidence 8999999999999999999996 55699999999887764433
No 8
>KOG4221|consensus
Probab=99.33 E-value=4.5e-11 Score=100.46 Aligned_cols=136 Identities=24% Similarity=0.327 Sum_probs=94.6
Q ss_pred EEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC--CCceEEEEEEEeccc----
Q psy1826 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT--PPIGISMYLSVVEPI---- 78 (169)
Q Consensus 5 ~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~l~v~~~p---- 78 (169)
.|+|.|+.... ..++|+. ...++ .|.|.+++..|.|.|.|.+.+. ...+..+.|+|...|
T Consensus 171 ~i~w~kn~~pl---------~~~~r~i-~lpsG----~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~ 236 (1381)
T KOG4221|consen 171 TIMWLKNDQPL---------PLDSRVI-VLPSG----ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALN 236 (1381)
T ss_pred eeEEecccccc---------cCCCcEE-EcCCC----cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCccccc
Confidence 47898776311 1335666 45566 8999999999999999999987 345667788877433
Q ss_pred --eeeecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceee
Q psy1826 79 --TQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEAT 156 (169)
Q Consensus 79 --~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (169)
.++..+....+.+|+.+.|.|.+.+.| .|.++|.+||..+..++.+. . +.-..+-++-..+..|.+.
T Consensus 237 ~~~fl~~p~~~~v~~g~~v~leCvvs~~p--~p~v~Wlrng~~i~~ds~ri-v--------l~g~~slliS~a~~~dSg~ 305 (1381)
T KOG4221|consen 237 KLVFLDEPSNAVVVEGDDVVLECVVSGVP--KPSVKWLRNGEKISVDSYRI-V--------LVGGSSLLISNATDDDSGK 305 (1381)
T ss_pred ceeeecCCCccccccCCcEEEEEEecCCC--CCceEEeeCCeeeeecceEE-E--------EecccceEEeccccccCce
Confidence 234456677889999999999999975 45999999999999886211 1 1111222344555556777
Q ss_pred EEEeeeeec
Q psy1826 157 YILAGTYTN 165 (169)
Q Consensus 157 ~~~~~~~~~ 165 (169)
|.+..++.|
T Consensus 306 YtC~Atn~~ 314 (1381)
T KOG4221|consen 306 YTCRATNTN 314 (1381)
T ss_pred EEEEecCCC
Confidence 777666644
No 9
>KOG4194|consensus
Probab=99.24 E-value=6.1e-11 Score=94.07 Aligned_cols=112 Identities=17% Similarity=0.266 Sum_probs=86.8
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC--CCceEEEEEEEeccceeeecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT--PPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~ 119 (169)
.|++.+|...|+|.|.|.+.|. ...++.+.++|...|.+...|.+..+..|+.+.|.|.+.|.| .|.|.|.++|..
T Consensus 575 ~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P--~PeIawqkdggt 652 (873)
T KOG4194|consen 575 ILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHP--RPEIAWQKDGGT 652 (873)
T ss_pred eeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCC--CcceeehhcCCC
Confidence 6899999999999999999987 456677889999999999999999999999999999999965 559999987654
Q ss_pred -eecccccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEeee
Q psy1826 120 -SQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAGT 162 (169)
Q Consensus 120 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
+.....++..+... ...+ .+..++++|.+.|.++..
T Consensus 653 dFPAA~eRRl~Vmpe--dd~f-----~Itnvk~eD~GiYtC~A~ 689 (873)
T KOG4194|consen 653 DFPAARERRLHVMPE--DDVF-----FITNVKIEDQGIYTCTAQ 689 (873)
T ss_pred CCchhhhheeeecCC--CCEE-----EEecccccccceeEEeee
Confidence 55554454442211 1122 367778888777777643
No 10
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.05 E-value=1.1e-09 Score=67.10 Aligned_cols=69 Identities=22% Similarity=0.328 Sum_probs=48.6
Q ss_pred CcEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEeccc
Q psy1826 3 LAQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVEPI 78 (169)
Q Consensus 3 ~~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~~~p 78 (169)
...|.|++++. .+... ....|+..... ......|.|.+++.+|+|.|+|.|.|. ......+.|.|..||
T Consensus 16 ~~~~~W~~dg~--~i~~~----~~~~~~~~~~~-~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP 85 (85)
T cd05853 16 DIVFTWSFNGH--LIDFQ----KDGDHFERVGG-QDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP 85 (85)
T ss_pred CcEEEEEECCE--ECccc----CCCccEEEecc-CCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence 46789999874 33211 11235543211 011228999999999999999999999 888889999999886
No 11
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.03 E-value=1.1e-08 Score=77.92 Aligned_cols=76 Identities=22% Similarity=0.281 Sum_probs=53.1
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEecc--ceeeecCCcEEEcCCCcEEEEEEee-c--CCCCCCeeEEEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVEP--ITQIIGGPDMYINKGSTMNLTCVIK-H--SPEPPPAIYWLH 115 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~~~--p~~~~~~~~~~v~~g~~~~l~C~~~-~--~p~p~~~i~W~~ 115 (169)
.|.|.++..+|+|.|.|.+.|. +.....+.|+|... +.+........+.+|..+.+.|... . ...|+|.+.|++
T Consensus 83 ~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k 162 (326)
T PHA02785 83 NMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSG 162 (326)
T ss_pred eEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEcc
Confidence 5889999999999999999998 55556677777543 2222222234567899999999722 1 113678999987
Q ss_pred CC
Q psy1826 116 NT 117 (169)
Q Consensus 116 ~~ 117 (169)
+.
T Consensus 163 ~~ 164 (326)
T PHA02785 163 HR 164 (326)
T ss_pred CC
Confidence 54
No 12
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.00 E-value=2.5e-09 Score=64.04 Aligned_cols=61 Identities=25% Similarity=0.359 Sum_probs=42.9
Q ss_pred EEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 5 ~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
.|.|+|++. .+.. ...|+.+.... .+...|.|.+++.+|+|.|.|.+.|. +.....+.|.|
T Consensus 14 ~i~W~k~~~--~i~~------~~~r~~~~~~~-~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 14 KIFWKRNNE--MVQY------NTDRISLYQDN-SGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred eEEEEECCE--ECcC------CCCeEEEEEcC-CCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 689999873 2211 12466643322 24457999999999999999999998 77777666653
No 13
>KOG4222|consensus
Probab=98.97 E-value=1.3e-09 Score=91.37 Aligned_cols=103 Identities=22% Similarity=0.365 Sum_probs=79.7
Q ss_pred EEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CC-ceEEEEEEEeccceeee
Q psy1826 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PP-IGISMYLSVVEPITQII 82 (169)
Q Consensus 5 ~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~-~~~~~~l~v~~~p~~~~ 82 (169)
.|.|.|++. .+.. + ..+++. +...+ .|+|.+++..|+|.|.|.+.|. +. .+..+.|+|++.|.+..
T Consensus 163 tvSw~Kdg~--pl~~--~---~~~~~~-lisgG----~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~ 230 (1281)
T KOG4222|consen 163 TVSWVKDGK--PLDH--Y---DVPIIA-LISGG----NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWK 230 (1281)
T ss_pred cceeecCCC--cccc--c---cceeEE-EecCC----cEEEeccccCCCceeeeeecccccccccccceeeeccCCcccc
Confidence 578988875 2221 0 112333 34455 8999999999999999999998 43 44567889999999998
Q ss_pred cCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEee
Q psy1826 83 GGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQ 121 (169)
Q Consensus 83 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~ 121 (169)
.+.++.+..|..+.+.|.+.|. |.|.+.|.+++..+.
T Consensus 231 rp~~~~v~~g~~~~f~c~v~Gd--P~P~Vrwkk~~~~~P 267 (1281)
T KOG4222|consen 231 RPKDLAVLVGAAAEFDCRVGGD--PQPTVRWKKDDPSLP 267 (1281)
T ss_pred ccccceeecccccccccccCCC--CCCceeeeccCCCCC
Confidence 8899999999999999999995 567999998765544
No 14
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.96 E-value=1e-08 Score=62.87 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=46.4
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEeccc
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVEPI 78 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~~~p 78 (169)
++|.|+|++. .+.... .+.++...... .....|.|.+++..|+|.|.|.|.|. +...+.+.|.|..+|
T Consensus 17 ~~v~W~~~g~--~i~~~~----~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P 85 (85)
T cd05854 17 LTFTWSLDDF--PIDLDK----PNGHYRRMEVK-ETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP 85 (85)
T ss_pred eEEEEEECCe--EccccC----CCCcEEEEEec-ceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence 5789999873 221110 12333211111 12238999999999999999999999 888888999988765
No 15
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.91 E-value=7.9e-09 Score=61.54 Aligned_cols=57 Identities=26% Similarity=0.409 Sum_probs=42.6
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
-+|.|+|++. .+. .+.|+.+ ..++ .|.|.+++.+|+|.|.|.|.|. +.....+.|+|
T Consensus 16 p~v~W~k~~~-~l~--------~~~r~~~-~~~g----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 16 PKFSWSKGTE-LLV--------NNSRISI-WDDG----SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CEEEEEeCCE-ecc--------cCCCEEE-cCCC----EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 4789999763 221 2356663 3445 8999999999999999999998 77777776653
No 16
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.91 E-value=6.9e-09 Score=62.13 Aligned_cols=61 Identities=25% Similarity=0.306 Sum_probs=41.9
Q ss_pred EEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 5 ~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
+|.|+|++. .+.. ...|+...... .+...|.|.+++.+|+|.|.|.|.|. +.....+.|.|
T Consensus 14 ~v~W~k~~~--~l~~------~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 14 QIFWKKENE--SLTH------NTDRVSMHQDN-CGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred EEEEEECCE--ECCC------CCCeEEEEEcC-CCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 789999874 2211 12455532222 23336999999999999999999998 77777666653
No 17
>KOG4222|consensus
Probab=98.89 E-value=6.2e-09 Score=87.53 Aligned_cols=98 Identities=27% Similarity=0.491 Sum_probs=81.5
Q ss_pred EEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEeccceeeec
Q psy1826 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVEPITQIIG 83 (169)
Q Consensus 5 ~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~ 83 (169)
+|.|.|.+. .+.. .|+.++..+. +|.|.+++..|+|.|.|.+.|. +.......++|+++|.+...
T Consensus 256 ~Vrwkk~~~--~~P~--------~ry~i~~d~q----tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kk 321 (1281)
T KOG4222|consen 256 TVRWKKDDP--SLPR--------SRYSILDDTQ----TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKK 321 (1281)
T ss_pred ceeeeccCC--CCCc--------cceeeeeccc----cccccccCCCcccceeeeccccccccccccceEEecCcccccc
Confidence 467777543 2222 5777666555 8999999999999999999998 88888999999999998888
Q ss_pred CCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCE
Q psy1826 84 GPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTE 118 (169)
Q Consensus 84 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~ 118 (169)
+.+..+-.|..+.|.|.+.|+ |+|.+.|.+.|.
T Consensus 322 p~dq~v~lg~~vt~pc~~~gn--P~PavfW~keg~ 354 (1281)
T KOG4222|consen 322 PRDQKVALGGTVTFPCETLGN--PPPAVFWLKEGS 354 (1281)
T ss_pred cCccccccCceEEeeeecCCC--CCcceEEeccCc
Confidence 888888899999999999997 567999998654
No 18
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.86 E-value=1.9e-08 Score=60.19 Aligned_cols=62 Identities=24% Similarity=0.376 Sum_probs=42.4
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
-.|.|+|++. .+.. ...|+.+.. ...+...|.|.+++.+|+|.|.|.+.|. +.....+.|.|
T Consensus 13 P~v~W~k~~~--~i~~------~~~r~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 13 PQIFWKKNNE--MLTY------NTDRISLYQ-DNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CeEEEEECCE--ECCC------CCCcEEEEE-cCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 3689999873 2211 123555332 2224457999999999999999999998 77766666543
No 19
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.86 E-value=1.4e-08 Score=62.20 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=33.6
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEeccc
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVEPI 78 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~~~p 78 (169)
.|.|.+++..|+|.|.|.+.|. +.....+.|.|..||
T Consensus 48 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP 85 (85)
T cd04970 48 DLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP 85 (85)
T ss_pred eEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence 8999999999999999999998 778888888888765
No 20
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.86 E-value=6.9e-08 Score=60.33 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=50.2
Q ss_pred CcEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy1826 3 LAQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLS 73 (169)
Q Consensus 3 ~~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 73 (169)
+..+.|++.+. ..+-........++|+.+.... ...+.|.|.+++.+|+|.|.|++...........++
T Consensus 26 ~~~v~w~~~~~-~~i~~~~~~~~~d~Rf~~~~~~-~~~~tL~I~~vq~~D~G~Y~Cqv~t~p~~~~~~~~~ 94 (95)
T cd05881 26 DSVIQLLNPNR-QTIYFRDVRPLKDSRFQLVNFS-SNELRVSLSNVSLSDEGRYFCQLYTDPPQEAYTTIT 94 (95)
T ss_pred ccEEEEEecCC-cEEEecCccccCCcCEEEEeCC-CCEEEEEECcCCcccCEEEEEEEEcccCeEEEEEEE
Confidence 45789998764 3333334455688999966533 478899999999999999999998876555555543
No 21
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.85 E-value=2e-08 Score=60.04 Aligned_cols=60 Identities=22% Similarity=0.454 Sum_probs=41.5
Q ss_pred EEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 5 ~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
+|.|+|++...... ....|+......+ .|.|.+++.+|+|.|.|.+.|. +.....+.|.|
T Consensus 14 ~v~W~k~~~~~~~~------~~~~~~~~~~~~~----~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 14 QIAWQKDGGTDFPA------ARERRMHVMPEDD----VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred EEEEEeCCCccCCc------ccccceEEecCCC----EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 68999987421111 1123454323333 7999999999999999999998 77777777765
No 22
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.84 E-value=2.5e-08 Score=62.86 Aligned_cols=64 Identities=17% Similarity=0.295 Sum_probs=47.0
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEeccc
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVEPI 78 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~~~p 78 (169)
..|.|+|++. .+. .+.|+..... .....|.|.++..+|+|.|.|.+.|. +...+.+.|.|...|
T Consensus 30 p~v~W~kdg~--~l~-------~~~~~~~~~~--~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P 94 (98)
T cd05762 30 ITCTWMKFRK--QIQ-------EGEGIKIENT--ENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKP 94 (98)
T ss_pred CceEEEECCE--Eec-------CCCcEEEEec--CCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCC
Confidence 4689999873 222 1234443221 12348999999999999999999999 888888999988665
No 23
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.84 E-value=6e-08 Score=60.74 Aligned_cols=68 Identities=18% Similarity=0.318 Sum_probs=46.9
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLS 73 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~ 73 (169)
-.|.|+|.+. ..+..+......+.|+.+.... ...+.|.|.+++.+|+|.|.|.+.......+.+.|.
T Consensus 27 ~~v~W~k~~~-~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~nV~~~D~G~YtC~~~t~~~~~~~~~~~ 94 (95)
T cd05882 27 SSLQWSNTAQ-QTLYFGEKRALRDNRIQLVKST-PTELIISISNVQLSDEGEYTCSIFTMPVRTAKATVT 94 (95)
T ss_pred CeEEEeccCc-cEEEeCCeEEEeCCeEEEEeCC-CceEEEEECCCCcccCEEEEEEEEeeccccEEEEEE
Confidence 4689998764 3333444444566788744332 356799999999999999999998864444444543
No 24
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.83 E-value=4e-08 Score=60.86 Aligned_cols=68 Identities=29% Similarity=0.394 Sum_probs=46.9
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEecc
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVEP 77 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~~~ 77 (169)
-.|.|+|++....+.. ........|+.. ...+ .|.|.+++.+|+|.|.|.+.|. +.....+.|.|...
T Consensus 16 p~v~W~k~g~~~~~~~-~~~~~~~~r~~v-~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 84 (90)
T cd05726 16 PAIFWQKEGSQNLLFS-YQPPQSSSRFSV-SQTG----DLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDV 84 (90)
T ss_pred CEEEEEeCCCcceeec-ccCCCCCCeEEE-CCCC----eEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEeec
Confidence 3689999874222111 111123456663 3344 7999999999999999999998 87778888888754
No 25
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.82 E-value=4e-08 Score=61.59 Aligned_cols=44 Identities=27% Similarity=0.551 Sum_probs=37.1
Q ss_pred cceeeecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeec
Q psy1826 77 PITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQL 122 (169)
Q Consensus 77 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 122 (169)
+|.+...+.+..+.+|+.+.|.|.+.|.| .|.+.|+++|..+..
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P--~p~i~W~k~g~~l~~ 44 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRP--TPTIQWLKNGQPLET 44 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCC--CCEEEEEECCEECcc
Confidence 45666667788999999999999999974 569999999998876
No 26
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.80 E-value=3.2e-08 Score=57.84 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEe
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVV 75 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~ 75 (169)
.|.|.++..+|+|.|.|.+.|. +...+.+.+++.
T Consensus 32 ~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 32 SLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred EEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 8999999999999999999998 766666666654
No 27
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.79 E-value=4.4e-08 Score=60.47 Aligned_cols=67 Identities=22% Similarity=0.313 Sum_probs=46.3
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEec-C-CCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEeccc
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHK-P-QNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVEPI 78 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~-~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~~~p 78 (169)
..|.|+|++. .+.. ...|+..... . ......|.|.++..+|+|.|.|.|.|. +.....+.|.|..+|
T Consensus 16 ~~i~W~k~~~--~i~~------~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P 85 (88)
T cd05735 16 IIVRWEKEDR--IINP------EMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPP 85 (88)
T ss_pred CEEEEeeCCE--ECCC------CCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCC
Confidence 5799999873 2211 1134442211 1 111237999999999999999999999 888888899888765
No 28
>PHA03376 BARF1; Provisional
Probab=98.78 E-value=2.9e-07 Score=63.54 Aligned_cols=110 Identities=19% Similarity=0.314 Sum_probs=62.3
Q ss_pred CCcEEEEEEcCc---eeEEEE-----cceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEE
Q psy1826 2 SLAQISWVRHRD---IHLLTV-----SGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYL 72 (169)
Q Consensus 2 ~~~~V~W~k~~~---~~~~~~-----~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l 72 (169)
..+.|.|+|.+. ...+.. ...++....|+.+... .++++|.|.+++.+|.|.|.|.+... ...-..-.|
T Consensus 42 ~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~--~gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehL 119 (221)
T PHA03376 42 PEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS--ANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHL 119 (221)
T ss_pred CceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEec--CCeEEEEEEeeeecCCceEEEEEEcCCCceeeeeee
Confidence 467899999532 122211 1223334456664333 37889999999999999999998765 222222233
Q ss_pred EEeccceeeecC--CcEEEcCCCcEEEEEEeecCCCCCCeeEEEECC
Q psy1826 73 SVVEPITQIIGG--PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNT 117 (169)
Q Consensus 73 ~v~~~p~~~~~~--~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~ 117 (169)
++..|-...... .+..+ ....++.|.+-|+|+ |.+.|.-+.
T Consensus 120 t~V~~~~Lsv~a~~~dFp~--~~~~~i~C~sggfP~--P~~~Wle~~ 162 (221)
T PHA03376 120 SVVKPLTLSVHSERSQFPD--FSVLTVTCTVNAFPH--PHVQWLMPE 162 (221)
T ss_pred eeeecceEEEEeccccCCC--CCeeEEEEecCCcCC--chheecccc
Confidence 322221111100 01111 445688999777654 599998653
No 29
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.76 E-value=4e-08 Score=58.09 Aligned_cols=57 Identities=25% Similarity=0.466 Sum_probs=40.3
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
-.|+|+|++. .+. ...++.. ...+ .|.|.+++.+|+|.|.|.|.|. +.....+.|.|
T Consensus 14 p~v~W~k~g~-~~~--------~~~~~~~-~~~~----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 14 PTVKWVKNGD-MVI--------PSDYFKI-VKEH----NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEECCe-ECC--------CCCCEEE-EecC----CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 4789999874 221 1234443 3334 6888999999999999999998 77766666643
No 30
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.76 E-value=3.7e-08 Score=58.69 Aligned_cols=56 Identities=29% Similarity=0.434 Sum_probs=40.4
Q ss_pred EEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 5 ~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
.|.|+|++. .+. .+.++. ....+ .|.|.+++.+|+|.|.|.+.|. +.....++|.|
T Consensus 18 ~i~W~k~g~--~~~-------~~~~~~-~~~~~----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 18 VIAWTKGGS--QLS-------VDRRHL-VLSSG----TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred EEEEEECCE--ECC-------CCCCeE-EccCC----eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 689999864 221 123443 33344 8999999999999999999998 77777666653
No 31
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.73 E-value=8.8e-08 Score=56.62 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=39.8
Q ss_pred EEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 5 ~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
.|.|+|++.. ... .+.......+ .|.|.+++.+|+|.|.|.|.|. +.....+.|.|
T Consensus 14 ~v~W~k~~~~-~~~---------~~~~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 14 EVHWDRIDGP-LSP---------NRTKKLNNNK----TLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred eEEEEECCcC-CCC---------CceeEEcCCC----EEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 6899998742 111 1222123334 8999999999999999999998 77777666665
No 32
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.73 E-value=7.3e-08 Score=56.57 Aligned_cols=54 Identities=22% Similarity=0.393 Sum_probs=39.3
Q ss_pred EEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEE
Q psy1826 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLS 73 (169)
Q Consensus 5 ~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~ 73 (169)
.|.|+|++.. . ...|+.. .... .|.|.+++.+|+|.|.|.+.|. +.....+.|.
T Consensus 14 ~v~W~k~~~~-~---------~~~~~~~-~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 68 (69)
T cd05725 14 TVLWRKEDGE-L---------PKGRAEI-LDDK----SLKIRNVTAGDEGSYTCEAENMVGKIEASASLT 68 (69)
T ss_pred EEEEEECCcc-C---------CCCcEEE-eeCC----EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence 6899998631 1 1135553 3344 8999999999999999999998 7666666554
No 33
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.73 E-value=6.9e-08 Score=57.35 Aligned_cols=57 Identities=28% Similarity=0.395 Sum_probs=41.5
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
..|.|+|++. .+. .+.|+. ...++ .|.|.+++.+|+|.|.|.+.|. +.....+.|.|
T Consensus 16 p~v~W~k~~~-~~~--------~~~~~~-~~~~~----~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 16 PTISWSKGTE-LLT--------NSSRIC-IWPDG----SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CEEEEEECCE-Ecc--------cCCCEE-ECCCC----eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 4789999874 221 234555 33344 7999999999999999999998 77766666653
No 34
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.71 E-value=7.9e-08 Score=56.47 Aligned_cols=55 Identities=27% Similarity=0.432 Sum_probs=39.1
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYL 72 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l 72 (169)
-.|.|+|++. .+. ...|+. ....+ .|.|.++..+|+|.|.|.+.|. +.....+.|
T Consensus 13 p~i~W~k~g~-~~~--------~~~~~~-~~~~~----~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 13 PTITWNKDGV-QVT--------ESGKFH-ISPEG----YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEEEEEECCE-ECC--------CCCCEE-ECCCC----EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 3689999863 121 124554 33344 8999999999999999999998 766665554
No 35
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.71 E-value=1.4e-07 Score=59.47 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=48.7
Q ss_pred ceeeecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeE
Q psy1826 78 ITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATY 157 (169)
Q Consensus 78 p~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (169)
|.++..+.++.+..|+.+.|.|.+.|. |+|.+.|++++.++..+.... .......+.+. +.+.+.+|.+.|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~--p~p~v~W~kdg~~l~~~~~~~-~~~~~~~s~L~------I~~~~~~D~G~Y 71 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGT--QPITCTWMKFRKQIQEGEGIK-IENTENSSKLT------ITEGQQEHCGCY 71 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEccc--CCCceEEEECCEEecCCCcEE-EEecCCeeEEE------ECCCChhhCEEE
Confidence 345556678889999999999999995 567999999999986543222 11111122222 555566666655
Q ss_pred EEe
Q psy1826 158 ILA 160 (169)
Q Consensus 158 ~~~ 160 (169)
.+.
T Consensus 72 tc~ 74 (98)
T cd05762 72 TLE 74 (98)
T ss_pred EEE
Confidence 554
No 36
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.71 E-value=1.2e-07 Score=56.43 Aligned_cols=59 Identities=17% Similarity=0.296 Sum_probs=40.8
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLS 73 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~ 73 (169)
-.|.|+|++. .+. .+.|+.+... .....|.|.++..+|+|.|.|.+.|. +.....+.|.
T Consensus 14 p~v~W~k~g~--~l~-------~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05748 14 PTVTWSKDGK--PLK-------LSGRVQIETT--ASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK 73 (74)
T ss_pred CeEEEEECCE--EcC-------CCCeEEEEEC--CCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence 4689999874 221 1234443222 23448999999999999999999998 7666666554
No 37
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.71 E-value=1.1e-07 Score=58.35 Aligned_cols=61 Identities=18% Similarity=0.347 Sum_probs=41.4
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
-.|.|+|++. .+.. .+.|+.... . .....|.|.++..+|+|.|.|.+.|. +.....+.|.|
T Consensus 25 P~v~W~k~~~--~i~~------~~~r~~~~~-~-~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V 86 (86)
T cd05894 25 PTVTWSRGDK--AFTE------TEGRVRVES-Y-KDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86 (86)
T ss_pred CeEEEEECCE--ECcc------CCCeEEEEE-c-CCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence 3689999874 2211 123554322 1 13448999999999999999999998 77666666553
No 38
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.69 E-value=1.4e-07 Score=56.51 Aligned_cols=59 Identities=17% Similarity=0.298 Sum_probs=40.5
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
-+|+|+|++. .+... . ...|+. ...+ .|.|.+++.+|+|.|.|.+.|. +.....+.|.|
T Consensus 16 p~i~W~k~g~-~i~~~-~----~~~~~~--~~~~----~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 16 PNITWSINGA-PIEGT-D----PDPRRH--VSSG----ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CeEEEEECCE-ECCCC-C----CCceEE--eeCC----EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 3689999874 22111 0 112333 2234 8999999999999999999998 77777777665
No 39
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.68 E-value=1.5e-07 Score=55.67 Aligned_cols=57 Identities=19% Similarity=0.420 Sum_probs=39.3
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEe
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVV 75 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~ 75 (169)
..+.|+|++. .+.. +.++. .... .|.|.++..+|+|.|.|.+.|. +.....+.++|.
T Consensus 13 p~v~W~k~g~--~l~~-------~~~~~--~~~~----~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 13 PEIQWYKNGK--LISE-------KNRTK--KSGH----SLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEEEECCE--ECCC-------CCEEE--cCCC----EEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4689999874 2211 12222 2223 8999999999999999999998 666666666553
No 40
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.67 E-value=1.1e-07 Score=57.17 Aligned_cols=59 Identities=24% Similarity=0.433 Sum_probs=38.0
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCce--EEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIG--ISMYLSV 74 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~--~~~~l~v 74 (169)
-+|.|+|++. .+.. ...++......+ .|.|.+++.+|+|.|.|.+.|. +... ..+.|.|
T Consensus 13 p~v~W~k~g~--~l~~------~~~~~~~~~~~~----~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 13 PTYQWFRDGT--PLSD------GQGNYSVSSKER----TLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CcEEEEECCE--ECCC------CCccEEEeCCCC----EEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 3689999874 2211 112333222223 8999999999999999999997 5432 3444444
No 41
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.67 E-value=3.2e-07 Score=58.11 Aligned_cols=38 Identities=26% Similarity=0.630 Sum_probs=32.5
Q ss_pred CcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 85 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
..+.+.+|+.+.|.|.+.|++ |+|.+.|++||.++..+
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~-P~p~v~W~Kdg~~i~~~ 48 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYP-PPPHINWTYDNRTLTNK 48 (101)
T ss_pred ceEEEECCCCEEEEEEEEecC-CCCccEEEeCCeeCCCC
Confidence 467889999999999999953 56799999999998743
No 42
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.67 E-value=2.2e-07 Score=57.76 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=40.3
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLS 73 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~ 73 (169)
-.|.|+|++. .+. ...++.+....+ ....|.|.+++.+|+|.|.|.+.|. +.....+.|.
T Consensus 31 p~v~W~k~g~--~l~-------~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05737 31 PEVSWLKNDQ--ALA-------LSDHYNVKVEQG-KYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVS 91 (92)
T ss_pred CeEEEEECCE--ECc-------cCCCEEEEEcCC-CEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEe
Confidence 3689999864 221 123444332211 2347999999999999999999998 7666655554
No 43
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.66 E-value=3.2e-07 Score=57.03 Aligned_cols=39 Identities=33% Similarity=0.589 Sum_probs=32.6
Q ss_pred CCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeeccc
Q psy1826 84 GPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNL 124 (169)
Q Consensus 84 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~ 124 (169)
+..+.+.+|+.+.|.|.+.|. |.|.+.|++++.++....
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~--P~p~v~W~k~g~~l~~~~ 46 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGD--PDPEVSWLKNDQALALSD 46 (92)
T ss_pred CceEEEeCCCcEEEEEEEEec--CCCeEEEEECCEECccCC
Confidence 345788999999999999996 456999999999887554
No 44
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.65 E-value=3.8e-07 Score=57.08 Aligned_cols=69 Identities=20% Similarity=0.360 Sum_probs=44.9
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSV 74 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~v 74 (169)
..|.|++.+. ..+.........++|+..... ..+.+.|.|.+++.+|+|.|.|.+.+.......+.|.|
T Consensus 27 ~~v~W~~~~~-~~l~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~~~~~~l~v 95 (95)
T cd07701 27 TSLQWSNPAQ-QTLYFDDKKALRDNRIELVRA-SWHELSISISDVSLSDEGQYTCSLFTMPVKTSKAYLTV 95 (95)
T ss_pred eEEEEeCCCC-eEEEEcCcccccCCCEEEEEC-CCCcEEEEECcCCcccCEEEEEEeEeecCccEEEEEEC
Confidence 4689997543 233222222334678875332 23556899999999999999999988644455556543
No 45
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.64 E-value=2.5e-07 Score=57.03 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
.|.|.+++.+|+|.|.|.|.|. +.....+.|.|
T Consensus 54 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 54 VLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV 87 (88)
T ss_pred EEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 7999999999999999999998 77777777765
No 46
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.63 E-value=1.7e-07 Score=59.34 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=30.1
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEe
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVV 75 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~ 75 (169)
.|.|..+..+|+|.|+|.|.|. +.....+.|.|.
T Consensus 66 ~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 66 ELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN 100 (101)
T ss_pred EEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence 7999999999999999999998 777777777765
No 47
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.63 E-value=4.9e-07 Score=56.15 Aligned_cols=76 Identities=14% Similarity=0.383 Sum_probs=49.7
Q ss_pred cceeeecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceee
Q psy1826 77 PITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEAT 156 (169)
Q Consensus 77 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (169)
||.++..+.+..+.+|+.+.|.|.+.|.| .|.+.|++++.++..+...... .....+.+. +.....+|.+.
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P--~p~v~W~k~g~~l~~~~~~~~~-~~~~~~~L~------i~~~~~~D~G~ 73 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEP--APTVTWMREGQIIVSSQRHQIT-STEYKSTFE------ISKVQMSDEGN 73 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecC--CCEEEEEECCEECCCCCcEEEE-EcCCeeEEE------ECCCCcccCEe
Confidence 56666677789999999999999999964 5699999999887543322111 111111222 44555566776
Q ss_pred EEEee
Q psy1826 157 YILAG 161 (169)
Q Consensus 157 ~~~~~ 161 (169)
|.+..
T Consensus 74 Y~C~a 78 (92)
T cd05747 74 YTVVV 78 (92)
T ss_pred EEEEE
Confidence 66653
No 48
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.62 E-value=3.9e-07 Score=54.91 Aligned_cols=64 Identities=27% Similarity=0.300 Sum_probs=40.3
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CC-ceEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PP-IGISMYLS 73 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~-~~~~~~l~ 73 (169)
-.|.|+|++...... .......+.|+.. ..++ .|.|.+++.+|+|.|.|.+.|. +. .+..+.|+
T Consensus 13 P~v~W~~~~~~~~~~-~~~~~~~~~r~~~-~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 13 PTIVWKHSKGRGHPQ-HTHTCCLAGRIQL-LSNG----SLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CEEEEEECCCccccc-cccccccCCCEEE-ecCC----eEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 368999875321111 0001113456663 3445 8999999999999999999998 43 34555554
No 49
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.62 E-value=2.8e-07 Score=54.32 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=27.5
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
.|.|.++..+|+|.|.|.+.|. +......++++
T Consensus 35 ~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 35 HLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred EEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 7999999999999999999998 66555555554
No 50
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.62 E-value=2.9e-07 Score=57.47 Aligned_cols=60 Identities=15% Similarity=0.328 Sum_probs=42.0
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEe
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVV 75 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~ 75 (169)
-.|.|+|++. .+... ..++....... .|.|.+++.+|+|.|.|.+.|. +.....+.|.|.
T Consensus 33 p~v~W~k~g~--~~~~~------~~~~~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 33 PTMTWTKDGE--PIESG------EEKYSFNEDGS----EMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred CEEEEEECCE--ECcCC------CCEEEEeCCCC----EEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence 4689999863 22111 13444222222 7999999999999999999998 777777777765
No 51
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.62 E-value=2.8e-07 Score=55.19 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
.|.|.+++..|+|.|.|.+.|. +.....+.|.|
T Consensus 42 ~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 42 TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 7899999999999999999998 77777777766
No 52
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.61 E-value=4.5e-07 Score=57.00 Aligned_cols=66 Identities=29% Similarity=0.489 Sum_probs=42.4
Q ss_pred EEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 5 ~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
.|.|+|+..+..+... ....+.|+..... .+...|.|.+++.+|+|.|.|.|.|. +.....+.|.|
T Consensus 32 ~i~W~k~~~g~~~~~~--~~~~~~r~~v~~~--~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 32 EITWKRASDGHTFSEG--DKSPDGRIEVKGQ--HGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred eEEEEECCCCceeccC--CcCcCceEEEeec--CCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence 6899986432222110 0112346664321 13348999999999999999999998 77666666653
No 53
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.60 E-value=2.4e-07 Score=54.50 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
.|.|.+++.+|+|.|.|.+.|. +.....+.|.|
T Consensus 37 ~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 37 TLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred EEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 8999999999999999999998 76666666654
No 54
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.60 E-value=1.7e-07 Score=56.92 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=27.6
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEE
Q psy1826 41 WTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLS 73 (169)
Q Consensus 41 ~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~ 73 (169)
..|.|.++..+|+|.|.|.|.|. +.....+.+.
T Consensus 46 ~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 46 GCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 37999999999999999999998 7666655543
No 55
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.59 E-value=5.7e-07 Score=55.21 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=43.6
Q ss_pred cEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEee
Q psy1826 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAG 161 (169)
Q Consensus 86 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (169)
.+.+..|+.+.|.|.+.|. |+|.+.|++++.++.....+.........+.+. +-..+.+|.+.|.+..
T Consensus 4 ~~~v~~G~~v~l~c~~~G~--P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~------I~~~~~~D~G~Y~c~a 71 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGE--PAPTVTWSRGDKAFTETEGRVRVESYKDLSSFV------IEGAEREDEGVYTITV 71 (86)
T ss_pred EEEEEcCCEEEEEeeEeec--CCCeEEEEECCEECccCCCeEEEEEcCCeEEEE------ECCCccCcCEEEEEEE
Confidence 4678899999999999996 567999999999887542221111111122232 4455666666666543
No 56
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.59 E-value=3.6e-07 Score=54.43 Aligned_cols=58 Identities=26% Similarity=0.439 Sum_probs=39.4
Q ss_pred EEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CC-ceEEEEEEE
Q psy1826 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PP-IGISMYLSV 74 (169)
Q Consensus 5 ~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~-~~~~~~l~v 74 (169)
.|.|+|++. .+.. ..+.|+.. ..++ .|.|.+++.+|+|.|.|.+.|. +. .+..+.|.|
T Consensus 14 ~v~W~k~~~--~~~~-----~~~~~~~~-~~~g----~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 14 EITWFKDFL--PVDT-----TSNGRIKQ-LRSG----ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred EEEEEECCE--ECcc-----CCCCCEEE-cCCc----EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 689999863 2211 02346553 3344 7999999999999999999998 44 345555544
No 57
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.59 E-value=2.3e-07 Score=58.77 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=29.8
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEe
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVV 75 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~ 75 (169)
.|.|.++..+|+|.|+|.|.|. +.....+.|.|.
T Consensus 66 ~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 66 KLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred EEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence 7999999999999999999998 777777777664
No 58
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.59 E-value=3.4e-07 Score=56.86 Aligned_cols=57 Identities=26% Similarity=0.458 Sum_probs=38.8
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CC-ceEEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PP-IGISMYLSV 74 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~-~~~~~~l~v 74 (169)
-.|.|+|++. .+. ..|+.+..... .|.|.+++.+|+|.|.|.+.|. +. .+..+.|.|
T Consensus 32 p~i~W~kng~--~l~--------~~~~~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 32 TYIWWVNNGS--LLV--------PPRLQLSNDNR----TLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred CEEEEEECCE--ECC--------CCCEEEeCCCC----EEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 3689999863 211 13444333334 8999999999999999999998 43 444555554
No 59
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.58 E-value=2e-07 Score=56.27 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=27.5
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEE
Q psy1826 41 WTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLS 73 (169)
Q Consensus 41 ~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~ 73 (169)
..|.|.++..+|+|.|.|.|.|. +.....+.+.
T Consensus 44 ~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 44 GCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 37999999999999999999998 7666655543
No 60
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.58 E-value=8.9e-07 Score=54.43 Aligned_cols=76 Identities=18% Similarity=0.304 Sum_probs=52.8
Q ss_pred ceeeecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeE
Q psy1826 78 ITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATY 157 (169)
Q Consensus 78 p~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (169)
|.+...+.++.+.+|+.+.|.|.+.+. |.|.+.|++++.++..+......... ....+. +.....+|.+.|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~--p~~~v~W~~~~~~l~~~~~~~~~~~~-~~~~L~------I~~v~~~D~G~Y 71 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGN--PPPTVTWYKNGRPLTSSQRYQIESDG-GSSSLT------IKNVTREDAGTY 71 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEES--SSSEEEEEETTEEEESSSSEEEEEET-TEEEEE------ESSESGGGSEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeC--CCCcccccccccceeeeeeeeeeccc-ceeEEc------cCCCChhhCEEE
Confidence 445556678899999999999999996 56799999999999875443333222 233333 445566677777
Q ss_pred EEeee
Q psy1826 158 ILAGT 162 (169)
Q Consensus 158 ~~~~~ 162 (169)
.+...
T Consensus 72 ~C~~~ 76 (90)
T PF07679_consen 72 TCVAS 76 (90)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76554
No 61
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.58 E-value=3.9e-07 Score=56.05 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
.|.|.+++.+|+|.|.|.+.|. +.....+.|.|
T Consensus 54 ~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 54 VLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred EEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence 8999999999999999999998 77766667665
No 62
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.58 E-value=3.4e-07 Score=56.46 Aligned_cols=44 Identities=27% Similarity=0.412 Sum_probs=35.9
Q ss_pred cceeeecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeec
Q psy1826 77 PITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQL 122 (169)
Q Consensus 77 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 122 (169)
+|.+...+.+..+.+|+.+.|.|.+.|.| .|.++|++++.++..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P--~P~v~W~k~~~~~~~ 44 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNP--VPVIRWRKILEPMPA 44 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccC--CCEEEEEECCcCCCC
Confidence 35566667788899999999999999964 569999999877643
No 63
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.57 E-value=6.4e-07 Score=54.37 Aligned_cols=39 Identities=23% Similarity=0.457 Sum_probs=33.1
Q ss_pred ecCCcEEEcCCCcEEEEEEeecCCCCCC-eeEEEECCEEeec
Q psy1826 82 IGGPDMYINKGSTMNLTCVIKHSPEPPP-AIYWLHNTEVSQL 122 (169)
Q Consensus 82 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~-~i~W~~~~~~~~~ 122 (169)
..+.++.+.+|+.+.|.|.+.|. |.| .|+|.++|.++..
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~G~--P~P~~I~W~k~g~~l~~ 42 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAVGP--PEPVEILWWQGGSPLGD 42 (81)
T ss_pred CCCCceEEcCCCCEEEEEEeeee--cCCeEEEEEECCEECCC
Confidence 34667889999999999999996 567 7999999998864
No 64
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.57 E-value=1.3e-06 Score=55.23 Aligned_cols=47 Identities=23% Similarity=0.310 Sum_probs=34.8
Q ss_pred CCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC--CCceEEEEEEE
Q psy1826 28 QRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT--PPIGISMYLSV 74 (169)
Q Consensus 28 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~l~v 74 (169)
.|..+.......+.+|.|.+++.+|+|.|.|.+.+. +.....+.|.|
T Consensus 51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 466654433346679999999999999999999885 55555566655
No 65
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.56 E-value=4.4e-07 Score=56.71 Aligned_cols=60 Identities=18% Similarity=0.346 Sum_probs=40.0
Q ss_pred CcEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEE
Q psy1826 3 LAQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLS 73 (169)
Q Consensus 3 ~~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~ 73 (169)
...|.|+|++....... ..+.|+. ...+ .|.|.++..+|+|.|.|.+.|. +.....+.|.
T Consensus 33 ~~~v~Wyk~~~~~~~~~-----~~~~r~~--~~~~----~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~ 93 (94)
T cd05756 33 GLNLTWYKSDGKTPIPT-----EERSRMH--QQKD----LLWFLPAALEDSGLYTCVVRNSTYCMKVSISLT 93 (94)
T ss_pred CceEEEEEcCCCCcccc-----cccceee--ecCC----eEEEccCCcccCeEEEEEEcCCCccEEEEEEEE
Confidence 45799999874222111 0123443 2234 8999999999999999999997 6655555554
No 66
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.56 E-value=4.4e-07 Score=53.92 Aligned_cols=57 Identities=21% Similarity=0.384 Sum_probs=38.5
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLS 73 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~ 73 (169)
..|.|++.+.. .+. ...++. ....+ .|.|.++..+|+|.|.|.+.|. +.....+.|.
T Consensus 16 p~v~W~~~~~~-~~~-------~~~~~~-~~~~~----~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05764 16 PAIHWISPDGK-LIS-------NSSRTL-VYDNG----TLDILITTVKDTGSFTCIASNAAGEATATVELH 73 (74)
T ss_pred CEEEEEeCCCE-Eec-------CCCeEE-EecCC----EEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 47899975432 221 112333 33344 8999999999999999999998 6665555554
No 67
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.55 E-value=4.9e-07 Score=53.89 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
.|.|.+++.+|+|.|.|.+.|. +.....+.|.|
T Consensus 42 ~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 42 TLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred EEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 8999999999999999999998 77777777665
No 68
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.55 E-value=6.5e-07 Score=55.68 Aligned_cols=59 Identities=24% Similarity=0.401 Sum_probs=38.3
Q ss_pred EEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCc-eEEEEEE
Q psy1826 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPI-GISMYLS 73 (169)
Q Consensus 5 ~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~-~~~~~l~ 73 (169)
.|.|++.++..+.. ..|+... .++ ....|.|.++..+|+|.|.|.|.|. +.. ...+.|.
T Consensus 30 ~v~W~k~~g~~~~~--------~~r~~~~-~~g-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~ 90 (92)
T cd05866 30 SIDWYNPQGEKIVS--------SQRVVVQ-KEG-VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 90 (92)
T ss_pred eEEEEeCCCeEecC--------CCCEEEE-eCC-CeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEE
Confidence 68999854322221 2456532 222 2347999999999999999999998 543 3444443
No 69
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.55 E-value=1.1e-06 Score=55.30 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=32.7
Q ss_pred CCeEEEec-CCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 28 QRFSCIHK-PQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 28 ~r~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
.|+.+... ...+.++|.|.+++.+|+|.|.|.+.+. ......+.|+|
T Consensus 51 ~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 51 GRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred ceEEeecccccCCcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 46664322 1235679999999999999999999986 44444455544
No 70
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.54 E-value=1.2e-06 Score=54.64 Aligned_cols=69 Identities=17% Similarity=0.332 Sum_probs=44.2
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSV 74 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~v 74 (169)
..|.|++.+. ..+.........+.|+..... ....+.|.|.+++.+|+|.|.|.+.+.......+.|+|
T Consensus 27 ~~v~W~~p~~-~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~v 95 (95)
T cd05717 27 SSLQWSNPNQ-QTLYFNDKRALRDNRIQLVNF-SANELSISISNVSLSDEGRYTCSLYTMPVQTAKATVTV 95 (95)
T ss_pred ceEEEeCCCC-cEEEeccccccccCcEEEEcC-CCCeeEEEEccCCcccCEEEEEEEecCCCceEEEEEEC
Confidence 4789986442 222222222224568875332 23456899999999999999999988644556556543
No 71
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.53 E-value=1.1e-06 Score=52.52 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=42.2
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEe
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVV 75 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~ 75 (169)
..|.|+|++. .+... ...++....... .|.|.++..+|.|.|.|.+.|. +.....+.|.|.
T Consensus 13 p~v~W~k~~~-~l~~~------~~~~~~~~~~~~----~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 13 PRLTWLKNGM-DITPK------LSKQLTLIANGS----ELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEEEEEECCE-ECCCC------CCccEEEeCCCC----EEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 4789999874 22111 113444322222 7999999999999999999998 777777777664
No 72
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.53 E-value=5.9e-07 Score=54.76 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=28.5
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 41 WTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 41 ~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
+.|.|.++..+|+|.|.|.+.|. +.....+.|.|
T Consensus 51 ~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 85 (85)
T cd05857 51 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 85 (85)
T ss_pred eEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence 47999999999999999999998 76666666543
No 73
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.53 E-value=7.6e-07 Score=55.84 Aligned_cols=62 Identities=27% Similarity=0.475 Sum_probs=38.9
Q ss_pred cEEEEEE-cCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC--CCceEEEEEEE
Q psy1826 4 AQISWVR-HRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT--PPIGISMYLSV 74 (169)
Q Consensus 4 ~~V~W~k-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~l~v 74 (169)
..|.|++ ++. .+.. .+.|+...... .....|.|.+++.+|+|.|.|.|.|. +....++.|.|
T Consensus 31 p~i~W~~~~g~-~l~~-------~~~r~~v~~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 31 KDISWFSPNGE-KLTP-------NQQRISVVRND-DYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred CEEEEECCCCc-Cccc-------cCCeEEEEeCC-CCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 3789997 442 2221 12344422221 12347999999999999999999997 45555555543
No 74
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.53 E-value=5.6e-07 Score=54.31 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
.|.|.+++.+|+|.|.|.+.|. +.....++|.|
T Consensus 48 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 81 (81)
T cd05765 48 QLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81 (81)
T ss_pred EEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence 8999999999999999999998 76666666543
No 75
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.52 E-value=1.1e-06 Score=54.65 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCCCCCeEEEEEEEcC-C-CceEEEEEE
Q psy1826 39 EDWTLQIKYPQKRDSGIYECQVSTT-P-PIGISMYLS 73 (169)
Q Consensus 39 ~~~~L~I~~v~~~D~G~Y~C~~~~~-~-~~~~~~~l~ 73 (169)
....|.|.+++.+|+|.|.|.+.|. + ....++.|.
T Consensus 55 ~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 55 VRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK 91 (92)
T ss_pred CEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence 4458999999999999999999997 3 344444443
No 76
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.52 E-value=1.1e-06 Score=55.08 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=45.5
Q ss_pred cCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEE-CCEEeecccccce-eecceeeEEEEEEEEeeEEEEeeeceeeEEEe
Q psy1826 83 GGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLH-NTEVSQLNLMQRE-SESSSFVKRLVVLLSVSIVELTWKLEATYILA 160 (169)
Q Consensus 83 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (169)
.+....+..|+.+.|.|.+.|.|. +|.+.|++ ++.++.....+.. .......+.+. +...+.+|.+.|.+.
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~-~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~------I~~v~~~D~G~YtC~ 78 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAK-DKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLT------IYNANIDDAGIYKCV 78 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCC-CCEEEEECCCCcCccccCCeEEEEeCCCCceEEE------EeccChhhCEEEEEE
Confidence 455567889999999999999753 47999997 7766544222111 11111122233 556677777777765
Q ss_pred ee
Q psy1826 161 GT 162 (169)
Q Consensus 161 ~~ 162 (169)
..
T Consensus 79 A~ 80 (96)
T cd05865 79 VS 80 (96)
T ss_pred EE
Confidence 54
No 77
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.52 E-value=2.1e-06 Score=53.05 Aligned_cols=38 Identities=18% Similarity=0.401 Sum_probs=31.7
Q ss_pred CCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 84 GPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 84 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
+.+..+.+|+.+.|.|.+.|. |.|.+.|++++..+...
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~--P~p~v~W~~~g~~~~~~ 44 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGS--PLPKVEWIIAGLIVIQT 44 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEc--CCCeEEEEECCEEccCC
Confidence 445668999999999999996 56799999999887543
No 78
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.51 E-value=6.8e-07 Score=53.91 Aligned_cols=53 Identities=26% Similarity=0.436 Sum_probs=36.6
Q ss_pred EEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEE
Q psy1826 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYL 72 (169)
Q Consensus 5 ~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l 72 (169)
.|.|+|++. .+ . .+.|+.. . .. .|.|.+++.+|+|.|.|.+.|. +.....+.|
T Consensus 24 ~v~W~k~g~-~l-~-------~~~~~~~-~-~~----~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v 77 (79)
T cd04973 24 SINWTKDGV-QL-G-------ENNRTRI-T-GE----EVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV 77 (79)
T ss_pred eEEEeeCCc-CC-C-------CCceEEE-e-CC----EEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence 689999874 22 1 1234542 2 23 7999999999999999999887 554444443
No 79
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.50 E-value=1.1e-06 Score=54.92 Aligned_cols=64 Identities=28% Similarity=0.379 Sum_probs=41.0
Q ss_pred EEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 5 ~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
.|.|++++. .+.... ...+.|+... .. .....|.|.+++.+|+|.|.|.+.|. +.....+.|.|
T Consensus 32 ~v~W~~~~~--~~~~~~--~~~~~~~~~~-~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 32 EITWRRATR--NFSEGD--KSLDGRIVVR-GH-ARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred cEEEEECCc--ccCCCC--ccccceEEEe-CC-ccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence 689999762 111100 0112344422 11 23458999999999999999999998 77777666653
No 80
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.50 E-value=1.1e-06 Score=53.98 Aligned_cols=61 Identities=28% Similarity=0.450 Sum_probs=43.0
Q ss_pred CcEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 3 LAQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 3 ~~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
...|.|++++. .+. .+.++...... ....|.|.++..+|+|.|.|.+.+. +.....+.|.|
T Consensus 29 ~~~v~W~~~~~--~l~-------~~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 29 PPTVTWYKNGR--PLT-------SSQRYQIESDG--GSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV 90 (90)
T ss_dssp SSEEEEEETTE--EEE-------SSSSEEEEEET--TEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCccccccccc--cee-------eeeeeeeeccc--ceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence 35799999863 222 13455543322 5668999999999999999999998 55555555543
No 81
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.50 E-value=4.1e-07 Score=54.92 Aligned_cols=33 Identities=36% Similarity=0.659 Sum_probs=27.1
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEE
Q psy1826 41 WTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLS 73 (169)
Q Consensus 41 ~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~ 73 (169)
..|.|.+++.+|+|.|.|.+.|. +.....+.|.
T Consensus 48 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 48 WTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred EEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 48999999999999999999997 6655555443
No 82
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.47 E-value=1.4e-06 Score=54.17 Aligned_cols=60 Identities=18% Similarity=0.291 Sum_probs=39.4
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLS 73 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~ 73 (169)
-.+.|+|++. .+. .+.++....... ....|.|.+++.+|+|.|.|.+.|. +.....+.|.
T Consensus 31 p~i~W~k~~~-~~~--------~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05891 31 PEVIWFKNDQ-DIE--------LSEHYSVKLEQG-KYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVS 91 (92)
T ss_pred CeEEEEECCE-ECC--------CCCCEEEEEcCC-CEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEE
Confidence 4689999864 221 123444322221 2347999999999999999999997 6665555443
No 83
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.47 E-value=3.1e-06 Score=52.97 Aligned_cols=46 Identities=24% Similarity=0.201 Sum_probs=35.1
Q ss_pred CCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC--CCceEEEEEEE
Q psy1826 28 QRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT--PPIGISMYLSV 74 (169)
Q Consensus 28 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~l~v 74 (169)
.|+.+. .....+.+|.|.+++.+|+|.|.|.+.+. +.......|.|
T Consensus 48 ~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 48 GRVSFK-NYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred CcEEEc-CCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 476643 23345669999999999999999999887 66666666665
No 84
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.46 E-value=2.1e-06 Score=53.90 Aligned_cols=57 Identities=23% Similarity=0.487 Sum_probs=36.1
Q ss_pred CcEEEEEEcCceeEEEEc----ceeecCC----CCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 3 LAQISWVRHRDIHLLTVS----GYTYTSD----QRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 3 ~~~V~W~k~~~~~~~~~~----~~~~~~~----~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
...|.|+|.....+.... ......+ .|+.+ ..++++|.|.+++.+|+|.|.|.+...
T Consensus 19 ~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~----~~~~~sL~I~~~~~~DsG~Y~c~v~~~ 83 (97)
T cd05775 19 IESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNF----SQNDYSLQISNLKMEDAGSYRAEINTK 83 (97)
T ss_pred EEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEe----cCCceeEEECCCchHHCEEEEEEEEcC
Confidence 357899987543333222 1111122 24442 123569999999999999999999876
No 85
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.46 E-value=1.6e-06 Score=54.40 Aligned_cols=65 Identities=29% Similarity=0.394 Sum_probs=41.0
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
-.|.|++++. .+.... ...+.|+.. ... .....|.|.++..+|+|.|.|.+.|. +.....+.|.|
T Consensus 32 P~v~W~~~~~--~~~~~~--~~~~~~~~v-~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 32 PSITWRTSTR--NISSEE--KTLDGHIVV-RSH-ARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred CEEEEEECCc--cccCCc--cccCccEEE-EcC-ccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence 3689998753 111100 011234442 111 12347999999999999999999998 77777666653
No 86
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.46 E-value=1.7e-06 Score=51.71 Aligned_cols=59 Identities=19% Similarity=0.382 Sum_probs=36.6
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGIS 69 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~ 69 (169)
..+.|+|++. .+.... ....|+.... ......|.|.++..+|+|.|.|.+.|. +.....
T Consensus 14 ~~~~W~~~g~--~i~~~~---~~~~~~~~~~--~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~ 73 (76)
T cd05895 14 LRFKWFKNGK--EIGAKN---KPDNKIKIRK--KKKSSELQISKASLADNGEYKCMVSSKLGNDSVT 73 (76)
T ss_pred CceEEEECCc--ccccCC---CCCceEEEEe--CCcEEEEEECcCCcccCEEEEEEEEeCCCceeEE
Confidence 5789999864 221110 0112233111 123347999999999999999999997 554443
No 87
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.44 E-value=2.8e-06 Score=53.04 Aligned_cols=44 Identities=18% Similarity=0.306 Sum_probs=32.4
Q ss_pred ceeeecCCcEEEc---CCCcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 78 ITQIIGGPDMYIN---KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 78 p~~~~~~~~~~v~---~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
|.++..+.++.+. +|+.+.|.|.+.|. |.|.++|+++|.++...
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~--P~P~i~W~k~g~~l~~~ 48 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGN--PVPTYRWLRNGTEIDTE 48 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeec--CCCEEEEEECCeECccC
Confidence 4445555554443 57899999999996 45699999999988643
No 88
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.44 E-value=2.3e-06 Score=53.14 Aligned_cols=39 Identities=31% Similarity=0.589 Sum_probs=32.2
Q ss_pred CCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeeccc
Q psy1826 84 GPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNL 124 (169)
Q Consensus 84 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~ 124 (169)
|..+.+.+|+.+.|.|.+.+. |.|.+.|++++..+..+.
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~--P~p~i~W~k~~~~~~~~~ 46 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGN--PDPEVIWFKNDQDIELSE 46 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEe--CCCeEEEEECCEECCCCC
Confidence 456789999999999999986 456999999998876543
No 89
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.43 E-value=9.5e-07 Score=53.90 Aligned_cols=56 Identities=21% Similarity=0.399 Sum_probs=37.5
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CC-ceEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PP-IGISMYL 72 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~-~~~~~~l 72 (169)
..|.|+|++. .+.. .+.|+.. ...+ .|.|.+++.+|+|.|.|.+.|. +. .+..+.|
T Consensus 27 p~i~W~k~g~--~~~~------~~~~~~~-~~~~----~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l 84 (86)
T cd05724 27 PTVSWRKDGQ--PLNL------DNERVRI-VDDG----NLLIAEARKSDEGTYKCVATNMVGERESAAARL 84 (86)
T ss_pred CEEEEEECCE--ECCC------CCCCEEE-ccCC----EEEEeECCcccCEEEEEEEEeccCceeeeeEEE
Confidence 4789999863 2111 1245553 3344 8999999999999999999997 44 3334443
No 90
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.42 E-value=3e-06 Score=52.86 Aligned_cols=42 Identities=24% Similarity=0.487 Sum_probs=34.4
Q ss_pred eecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeeccc
Q psy1826 81 IIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNL 124 (169)
Q Consensus 81 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~ 124 (169)
...|.+..+.+|+.+.|.|.+.+. |+|.+.|++||.++....
T Consensus 3 ~~~P~~~~~~~g~~v~l~C~v~g~--P~p~i~W~k~g~~l~~~~ 44 (95)
T cd05722 3 LSEPSDIVAVRGGPVVLNCSAEGE--PPPKIEWKKDGVLLNLVS 44 (95)
T ss_pred EECCCCeEEcCCCCEEEeeecccC--CCCEEEEEECCeECcccc
Confidence 345666778899999999999996 467999999999887543
No 91
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.42 E-value=4.3e-06 Score=53.23 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=34.7
Q ss_pred CCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEe
Q psy1826 28 QRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVV 75 (169)
Q Consensus 28 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~ 75 (169)
.|+.+.. ...+..+|.|.+++.+|+|.|.|.+.+. ......+.|.|.
T Consensus 56 ~R~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 56 GRVFLRR-AHDLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred CcEEecC-CCCCcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence 5777432 2245679999999999999999999876 555666666553
No 92
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.42 E-value=1.2e-06 Score=56.27 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=32.2
Q ss_pred EEEEcCCC-CCCCeEEEEEEEcC-CCceEEEEEEEeccc
Q psy1826 42 TLQIKYPQ-KRDSGIYECQVSTT-PPIGISMYLSVVEPI 78 (169)
Q Consensus 42 ~L~I~~v~-~~D~G~Y~C~~~~~-~~~~~~~~l~v~~~p 78 (169)
.|.|.++. .+|.|.|.|.|.|. +.....+.|.+..+|
T Consensus 70 ~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 70 ILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred EEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 79999997 69999999999999 888888888887655
No 93
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.41 E-value=5.3e-07 Score=55.79 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=29.4
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
.|.|.+++.+|+|.|.|.|.|. +.....+.|.|
T Consensus 56 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V 89 (90)
T cd04974 56 VLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89 (90)
T ss_pred eEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence 7999999999999999999998 77777777766
No 94
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.40 E-value=5.2e-06 Score=52.31 Aligned_cols=46 Identities=26% Similarity=0.411 Sum_probs=35.0
Q ss_pred CCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC--CCceEEEEEEE
Q psy1826 28 QRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT--PPIGISMYLSV 74 (169)
Q Consensus 28 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~l~v 74 (169)
+|+.+. ....++.+|.|.+++.+|+|.|.|.+.+. +..+..+.|.|
T Consensus 51 ~Rv~f~-~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 51 ERVTFK-NPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcEEEc-CCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 577643 32335669999999999999999999995 55666666665
No 95
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.40 E-value=2.4e-06 Score=50.58 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=32.2
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
-+|.|+|++. .+.. ...++. .... .|.|.+++.+|+|.|.|.+.+.
T Consensus 13 P~v~W~kdg~--~l~~------~~~~~~--~~~~----~L~I~~v~~~D~G~YtC~a~~~ 58 (72)
T cd07702 13 PEVIWLKDGL--PAAE------KCSRYH--VDGY----SLVIKDVTEEDAGIYTILLGIK 58 (72)
T ss_pred CeEEEEECCE--ECCC------CCcEEE--eCCC----EEEECcCCHHHCEEEEEEEEcc
Confidence 4689999973 2211 012333 2223 8999999999999999999987
No 96
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.39 E-value=5.2e-06 Score=51.95 Aligned_cols=36 Identities=31% Similarity=0.337 Sum_probs=28.8
Q ss_pred CeEEEEEcCCCCCCCeEEEEEEEcC--CCceEEEEEEE
Q psy1826 39 EDWTLQIKYPQKRDSGIYECQVSTT--PPIGISMYLSV 74 (169)
Q Consensus 39 ~~~~L~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~l~v 74 (169)
+..+|.|.+++.+|+|.|.|.+... +.....+.|.|
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence 5669999999999999999998764 55555566655
No 97
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.39 E-value=6.6e-06 Score=52.38 Aligned_cols=38 Identities=29% Similarity=0.287 Sum_probs=30.7
Q ss_pred CCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEe
Q psy1826 38 NEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVV 75 (169)
Q Consensus 38 ~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~ 75 (169)
.+..+|.|.+++.+|+|.|.|.+.+. ......+.|.|.
T Consensus 65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 65 PGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred CCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence 46679999999999999999999886 555566666654
No 98
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.39 E-value=2.5e-06 Score=50.62 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCCCCeEEEEEEEcC-CCceEE
Q psy1826 40 DWTLQIKYPQKRDSGIYECQVSTT-PPIGIS 69 (169)
Q Consensus 40 ~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~ 69 (169)
...|.|.+++.+|+|.|.|.+.|. +.....
T Consensus 42 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 72 (75)
T cd05750 42 NSELQINKAKLADSGEYTCVVENILGNDTVT 72 (75)
T ss_pred eEEEEEccCCcccCeEEEEEEEEcCCceeEE
Confidence 348999999999999999999998 554443
No 99
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.39 E-value=1.4e-06 Score=53.34 Aligned_cols=55 Identities=25% Similarity=0.452 Sum_probs=39.2
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLS 73 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~ 73 (169)
-.|.|+|++. .+. ...|+.. .++ .|.|.++..+|+|.|.|.+.|. +.....+.|.
T Consensus 29 p~v~W~k~g~--~~~-------~~~~~~~--~~~----~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05728 29 PAYRWLKNGQ--PLA-------SENRIEV--EAG----DLRITKLSLSDSGMYQCVAENKHGTIYASAELA 84 (85)
T ss_pred CEEEEEECCE--ECC-------CCCeEEE--eCC----EEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEE
Confidence 3689999874 221 1234442 234 8999999999999999999998 7666666654
No 100
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.38 E-value=2.9e-06 Score=51.66 Aligned_cols=36 Identities=19% Similarity=0.444 Sum_probs=30.3
Q ss_pred EEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeeccc
Q psy1826 87 MYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNL 124 (169)
Q Consensus 87 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~ 124 (169)
+.+.+|+.+.|.|.+.|. |+|.+.|+++|.++..+.
T Consensus 4 ~~v~~G~~~~L~C~~~g~--P~p~i~W~k~g~~l~~~~ 39 (85)
T cd05857 4 HAVPAANTVKFRCPAAGN--PTPTMRWLKNGKEFKQEH 39 (85)
T ss_pred EEcCCCCEEEEEEEcCCC--CCCEEEEEECCEECCCCC
Confidence 467889999999999996 567999999999887543
No 101
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.37 E-value=2.5e-06 Score=51.23 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=36.3
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGI 68 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~ 68 (169)
-.|.|++++. ... ...|+..... .+...|.|.+++.+|+|.|.|.+.|. +....
T Consensus 16 p~v~W~~~~~-~~~--------~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 70 (78)
T cd05743 16 PIINWRLNWG-HVP--------DSARVSITSE--GGYGTLTIRDVKESDQGAYTCEAINTRGMVFG 70 (78)
T ss_pred CEEEEEECCe-ECC--------CCCCEEEEEC--CCEEEEEECCCChHHCEEEEEEEEecCCEEEe
Confidence 3689998763 111 1245543322 13448999999999999999999997 54433
No 102
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.37 E-value=2.9e-06 Score=52.43 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEE
Q psy1826 40 DWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLS 73 (169)
Q Consensus 40 ~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~ 73 (169)
...|.|.++..+|.|.|.|.|.|. +.....+.|.
T Consensus 55 ~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~ 89 (90)
T cd04972 55 IYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT 89 (90)
T ss_pred EEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence 347999999999999999999998 7777666664
No 103
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.37 E-value=3.4e-06 Score=52.64 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=32.9
Q ss_pred ceeeecCCcEEEcCC---CcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 78 ITQIIGGPDMYINKG---STMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 78 p~~~~~~~~~~v~~g---~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
|.+...+.++.+.+| +.+.|.|.+.|. |+|.++|+++|.++...
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~--P~p~i~W~~~g~~l~~~ 48 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARAS--PPATYRWKMNGTEIKFA 48 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeC--CCCEEEEEECCEECccC
Confidence 445555666655555 579999999996 45699999999988654
No 104
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.35 E-value=5e-06 Score=53.91 Aligned_cols=36 Identities=22% Similarity=0.505 Sum_probs=29.8
Q ss_pred CCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 28 QRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 28 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.|+.+......++.+|.|.+++.+|.|.|.|.+.|.
T Consensus 67 ~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~ 102 (116)
T cd05879 67 ERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNP 102 (116)
T ss_pred CceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcC
Confidence 477755444457779999999999999999999987
No 105
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.34 E-value=3.1e-06 Score=52.51 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=39.4
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYL 72 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l 72 (169)
-.|.|+|++. .+. .+.|+.+... .....|.|.++..+|+|.|.|.+.|. +.....+.|
T Consensus 33 p~v~W~k~g~--~l~-------~~~~~~~~~~--~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 33 PTVTWMREGQ--IIV-------SSQRHQITST--EYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred CEEEEEECCE--ECC-------CCCcEEEEEc--CCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 3589999863 211 2245553322 12348999999999999999999998 666555443
No 106
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.34 E-value=1e-05 Score=52.02 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=45.5
Q ss_pred CcEEEEEEcCce---eEEEEcceeec----CCCCeEEEec-CCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEE
Q psy1826 3 LAQISWVRHRDI---HLLTVSGYTYT----SDQRFSCIHK-PQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLS 73 (169)
Q Consensus 3 ~~~V~W~k~~~~---~~~~~~~~~~~----~~~r~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~ 73 (169)
...|.|+|...+ .+......... -..|+.+... ...+..+|.|.+++.+|+|.|.|.+... ......+.|.
T Consensus 26 ~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~ 105 (110)
T cd05878 26 SPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLE 105 (110)
T ss_pred CCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEE
Confidence 478999996321 11111111111 1247664321 2235678999999999999999999876 5566667776
Q ss_pred Ee
Q psy1826 74 VV 75 (169)
Q Consensus 74 v~ 75 (169)
|.
T Consensus 106 V~ 107 (110)
T cd05878 106 VT 107 (110)
T ss_pred EE
Confidence 64
No 107
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.33 E-value=3.7e-06 Score=51.68 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=33.2
Q ss_pred ceeeecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEee
Q psy1826 78 ITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQ 121 (169)
Q Consensus 78 p~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~ 121 (169)
+.+...+.+..+.+|+.+.|.|.+.|. |.|.+.|++++..+.
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~--P~p~v~W~k~~~~~~ 43 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFALGN--PVPQIKWRKVDGSMP 43 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEeeEe--CCCEEEEEECCCcCC
Confidence 344555667888899999999999996 456999999876554
No 108
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.33 E-value=5e-06 Score=51.69 Aligned_cols=45 Identities=27% Similarity=0.512 Sum_probs=32.4
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
-.|.|+|++. .+.. .+.... ..+ .|.|.++..+|+|.|.|.+.+.
T Consensus 30 p~i~Wyk~~~--~i~~--------~~~~~~-~~~----~L~I~~v~~~DsG~YtC~~~n~ 74 (92)
T cd05757 30 PPVQWYKDCK--LLEG--------DRKRFV-KGS----KLLIQNVTEEDAGNYTCKLTFT 74 (92)
T ss_pred CcEEEeECCE--ECCC--------CccEEe-cCC----EEEEeeCChhhCEEEEEEEEec
Confidence 4799999874 2211 122212 344 8999999999999999999987
No 109
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.32 E-value=5.7e-06 Score=50.56 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=33.8
Q ss_pred eecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 81 IIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 81 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
+..+.+..+..|+.+.|.|.+.|.| .|.+.|++++.++..+
T Consensus 3 ~~~p~~~~~~~G~~~~l~C~~~g~p--~p~v~W~k~g~~~~~~ 43 (85)
T cd05728 3 LKVISDTEADIGSSLRWECKASGNP--RPAYRWLKNGQPLASE 43 (85)
T ss_pred cccCCccEEcCCCcEEEEEEeeEeC--CCEEEEEECCEECCCC
Confidence 3445678899999999999999964 5699999999987643
No 110
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.32 E-value=7.6e-06 Score=49.25 Aligned_cols=42 Identities=29% Similarity=0.438 Sum_probs=33.9
Q ss_pred eeeecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEee
Q psy1826 79 TQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQ 121 (169)
Q Consensus 79 ~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~ 121 (169)
.+...|+...+.+|+.+.|.|.+.+.|. ++.+.|++||..+.
T Consensus 2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~-~~~~~W~kng~~l~ 43 (78)
T cd05752 2 VVSLDPPWTTIFQGEKVTLTCNGFNSPE-QNSTQWYHNGKLLE 43 (78)
T ss_pred eEEeCCCCeEeeCCCCEEEEEeCCCCCC-CccEEEEECCEEee
Confidence 3455677788999999999999998752 35799999999873
No 111
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.31 E-value=6.5e-06 Score=51.62 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCCCCCeEEEEEEEcC--CCceEEEEEEE
Q psy1826 38 NEDWTLQIKYPQKRDSGIYECQVSTT--PPIGISMYLSV 74 (169)
Q Consensus 38 ~~~~~L~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~l~v 74 (169)
....+|.|.+++.+|+|.|.|.+... +.....+.|+|
T Consensus 58 ~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 58 LNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred CCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 35668999999999999999998876 55555566655
No 112
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.31 E-value=5.8e-06 Score=50.58 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=26.3
Q ss_pred CcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 93 STMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 93 ~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
+++.|.|.+.|.|.|++.+.|++++.++...
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~ 31 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLD 31 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEcccc
Confidence 4689999999998776789999999988654
No 113
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.30 E-value=6.2e-06 Score=50.24 Aligned_cols=38 Identities=21% Similarity=0.469 Sum_probs=31.5
Q ss_pred CCcEEEcCCCcEEEEEEe-ecCCCCCCeeEEEECCEEeecc
Q psy1826 84 GPDMYINKGSTMNLTCVI-KHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 84 ~~~~~v~~g~~~~l~C~~-~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
+.+..+.+|+++.|.|.+ .+. |+|.+.|++++.++...
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~--p~p~i~W~k~g~~~~~~ 41 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGH--PEPTVSWRKDGQPLNLD 41 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCC--CCCEEEEEECCEECCCC
Confidence 456778899999999998 564 56799999999988764
No 114
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.30 E-value=3.2e-06 Score=52.21 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 41 WTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 41 ~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
..|.|.+++.+|+|.|.|.|.|. +.....+.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 89 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence 37999999999999999999998 77777777776
No 115
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.30 E-value=3.7e-06 Score=50.24 Aligned_cols=59 Identities=29% Similarity=0.457 Sum_probs=35.8
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeeccccccee-ecceeeEEEEEEEEeeEEEEeeeceeeEEEee
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRES-ESSSFVKRLVVLLSVSIVELTWKLEATYILAG 161 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (169)
+.|.|.+.|. |.|.+.|++++.++..+..+... ........+. +-....+|.+.|.+..
T Consensus 1 v~l~C~v~G~--P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~------I~~~~~~D~G~Y~C~A 60 (75)
T cd05892 1 VKLECQISAI--PPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLL------IKNVNKKDAGWYTVSA 60 (75)
T ss_pred CEEEEEEEec--CCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEE------ECCCChhhCEEEEEEE
Confidence 4789999996 56799999999998754332111 1111111122 4466666777776654
No 116
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.30 E-value=3.8e-06 Score=49.88 Aligned_cols=31 Identities=23% Similarity=0.565 Sum_probs=26.5
Q ss_pred CCCcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 91 KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 91 ~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
+|+.+.|.|.+.|.| .|.++|++++.++..+
T Consensus 1 eG~~v~l~C~~~g~P--~p~i~W~k~g~~~~~~ 31 (74)
T cd05745 1 EGQTVDFLCEAQGYP--QPVIAWTKGGSQLSVD 31 (74)
T ss_pred CCCeEEEEeECCEec--CCEEEEEECCEECCCC
Confidence 588999999999964 5699999999987654
No 117
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.30 E-value=1.3e-05 Score=50.17 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=31.6
Q ss_pred ceeeecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeec
Q psy1826 78 ITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQL 122 (169)
Q Consensus 78 p~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 122 (169)
|.+...+....+..|+.+.|.|.+.|. |.|.++|++++..+..
T Consensus 3 p~i~~~~~~~~~~~g~~v~l~C~~~G~--P~P~v~W~~~~~~~~~ 45 (97)
T cd05869 3 PKITYVENQTAMELEEQITLTCEASGD--PIPSITWRTSTRNISS 45 (97)
T ss_pred ceEEEccCceEEEcCCCEEEEEEeeEe--CCCEEEEEECCccccC
Confidence 444444444555568999999999996 4579999999877643
No 118
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.29 E-value=5.6e-06 Score=51.59 Aligned_cols=36 Identities=22% Similarity=0.465 Sum_probs=30.8
Q ss_pred cEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 86 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
+..+..|+.+.|.|.+.|. |.|.+.|+++|.++...
T Consensus 12 ~~~~~~G~~v~L~C~~~g~--P~p~v~W~k~g~~~~~~ 47 (95)
T cd05730 12 NATANLGQSVTLACDADGF--PEPTMTWTKDGEPIESG 47 (95)
T ss_pred ceEEeCCCCEEEEEeccEe--CCCEEEEEECCEECcCC
Confidence 4678899999999999996 46799999999987654
No 119
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.28 E-value=2.3e-06 Score=53.48 Aligned_cols=48 Identities=25% Similarity=0.515 Sum_probs=33.0
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
..|.|+|++. .+.. .+.++....... .|.|.++..+|+|.|+|.+.+.
T Consensus 30 ~~v~WYKd~~--~l~~------~~~~~~~~~~~~----~L~I~~v~~~D~G~YtC~~~~~ 77 (95)
T cd05897 30 VELQWYKDSV--LLDK------DNEKFYSLKGST----YLHIIDVSLNDSGYYTCKLQFT 77 (95)
T ss_pred CcEEEccCCE--ECcC------CCcceEecCCCC----EEEEEEcChhhCEEEEEEEEEe
Confidence 4799999873 2221 112333222223 7999999999999999999886
No 120
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.27 E-value=8.1e-06 Score=51.64 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=31.3
Q ss_pred cEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeeccc
Q psy1826 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNL 124 (169)
Q Consensus 86 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~ 124 (169)
...+..|..+.|.|.+.|.| +|.+.|++||.++..+.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P--~P~v~W~kdg~~l~~~~ 48 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYP--PPQIRWLKDNRTLIENL 48 (101)
T ss_pred eEEEecCCcEEEEEEEEEeC--CCceEEEECCEECcCCc
Confidence 56788899999999999974 56999999999987543
No 121
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.24 E-value=2.2e-05 Score=49.28 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=29.3
Q ss_pred cceeeecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEEC
Q psy1826 77 PITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 77 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
+|.+. ...+..+.+|+.+.|.|.+.|. |.|.+.|+++
T Consensus 2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~--P~p~i~W~k~ 38 (98)
T cd05870 2 QPHII-QLKNETTVENGAATLSCKAEGE--PIPEITWKRA 38 (98)
T ss_pred CCEEE-eeccEEEcCCCcEEEEEecccC--CCCeEEEEEC
Confidence 34433 3567889999999999999996 4569999984
No 122
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.23 E-value=1.8e-05 Score=49.67 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=33.9
Q ss_pred eecCCcEEEcCCCcEEEEEEeecCCCCCC-eeEEEECCEEeeccc
Q psy1826 81 IIGGPDMYINKGSTMNLTCVIKHSPEPPP-AIYWLHNTEVSQLNL 124 (169)
Q Consensus 81 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~-~i~W~~~~~~~~~~~ 124 (169)
+..+....+.+|+.+.|.|.+.|.| .| .+.|++++.++....
T Consensus 5 i~~~~~~~~~~G~~v~L~C~~~g~P--~P~~v~W~~~~~~i~~~~ 47 (98)
T cd05758 5 ITSEATQYAILGDKGRVECFIFSTP--PPDRIVWTWKENELESGS 47 (98)
T ss_pred EcCCCcEEEeCCCcEEEEEEEcccC--CCCEeEEEECCEEccCCC
Confidence 4455677789999999999999964 55 699999998886543
No 123
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.22 E-value=9.1e-06 Score=50.61 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=30.7
Q ss_pred ceeeecCCcEEEcC---CCcEEEEEEeecCCCCCCeeEEEECCEEeec
Q psy1826 78 ITQIIGGPDMYINK---GSTMNLTCVIKHSPEPPPAIYWLHNTEVSQL 122 (169)
Q Consensus 78 p~~~~~~~~~~v~~---g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 122 (169)
|.+...+....+.+ +..+.|.|.+.|. |.|.++|++++.++..
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~--P~P~i~W~k~~~~i~~ 47 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARAN--PFPIYKWRKNNLDIDL 47 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccC--CCCEEEEEECCEEccC
Confidence 44444455544443 3479999999996 5669999999998754
No 124
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.22 E-value=1e-05 Score=49.27 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=28.0
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 41 WTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 41 ~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
..|.|.+++.+|+|.|.|.+.|. +....++.|.|
T Consensus 49 s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 49 STLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred EEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 37999999999999999999998 66666665544
No 125
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.22 E-value=7.4e-06 Score=48.97 Aligned_cols=30 Identities=30% Similarity=0.593 Sum_probs=25.5
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
|+.+.|.|.+.|. |+|.++|+++|.++...
T Consensus 1 g~~~~l~C~a~G~--P~P~i~W~k~g~~i~~~ 30 (76)
T cd05868 1 GEDGTLICRANGN--PKPSISWLTNGVPIEIA 30 (76)
T ss_pred CCCEEEEEEeeEe--CCCeEEEEECCEEcccc
Confidence 6788999999997 46799999999988643
No 126
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.22 E-value=3.1e-05 Score=48.50 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=30.5
Q ss_pred CCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC--CCceEEEE
Q psy1826 28 QRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT--PPIGISMY 71 (169)
Q Consensus 28 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~ 71 (169)
.|+.+.. ....+.+|.|.+++.+|+|.|.|.+.+. +.....+.
T Consensus 48 ~Rv~f~~-~~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~ 92 (96)
T cd05889 48 GRVYFLN-STREDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIE 92 (96)
T ss_pred CeEEEec-CCCCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEE
Confidence 5666432 2224569999999999999999999887 44444333
No 127
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.21 E-value=8.4e-06 Score=50.19 Aligned_cols=60 Identities=20% Similarity=0.314 Sum_probs=37.2
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC--CCceEEEEEEE
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT--PPIGISMYLSV 74 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~l~v 74 (169)
..|.|+|++....... . ...|+.. ... .|.|.+++.+|+|.|.|.+.+. .......+|.|
T Consensus 25 ~~i~W~k~~~~~~~~~-~----~~~~~~~--~~~----~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V 86 (89)
T cd04979 25 ASVVWLFQGGPLQRKE-E----PEERLLV--TED----GLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNV 86 (89)
T ss_pred ceEEEEECCccccccc-C----cCceEEE--cCC----CEEEccCCHHHCEEEEEEEecCccceeEeEEEEEE
Confidence 4789999874221110 0 1123332 223 6999999999999999999876 33444445544
No 128
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.20 E-value=2.3e-05 Score=48.64 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=43.2
Q ss_pred cCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEE-CCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEee
Q psy1826 83 GGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLH-NTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAG 161 (169)
Q Consensus 83 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (169)
.+....+..|+.+.|.|.+.|. | +.+.|++ ++.++...............+.+. +-..+.+|.+.|.+..
T Consensus 6 ~p~~~~v~~G~~~~l~C~~~G~--p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~------I~~v~~~D~G~Y~C~A 76 (92)
T cd04977 6 VPSQGEISVGESKFFLCQVIGE--P-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLT------IYNANIEDAGIYKCVA 76 (92)
T ss_pred ecCcEEECCCCeEEEEEEeEee--C-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEE------EecCCcccCEEEEEEE
Confidence 4556789999999999999996 3 3899997 666654422211111111112222 3345666777777765
Q ss_pred e
Q psy1826 162 T 162 (169)
Q Consensus 162 ~ 162 (169)
.
T Consensus 77 ~ 77 (92)
T cd04977 77 T 77 (92)
T ss_pred E
Confidence 4
No 129
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.20 E-value=8.8e-06 Score=48.76 Aligned_cols=49 Identities=24% Similarity=0.383 Sum_probs=32.2
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCC----CCCeEEEEEEEcC
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQK----RDSGIYECQVSTT 63 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~~~~~ 63 (169)
-+|+|+|++. .+... .+.++......+ .|.|..+.. +|+|.|.|.|.|.
T Consensus 13 P~v~W~k~g~--~l~~~-----~~~~~~~~~~~g----~L~i~~~~~~~~~~d~G~Y~C~A~N~ 65 (77)
T cd05733 13 PTFSWTRNGT--HFDPE-----KDPRVTMKPDSG----TLVIDNMNGGRAEDYEGEYQCYASNE 65 (77)
T ss_pred CeEEEEECCe--ECCCC-----CCCCEEEeCCCC----EEEEeccCCCCCcCCCEEEEEEEEcC
Confidence 3689999874 22111 123444333344 888888754 7899999999998
No 130
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.18 E-value=1.8e-05 Score=49.27 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=30.8
Q ss_pred cCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeec
Q psy1826 83 GGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQL 122 (169)
Q Consensus 83 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 122 (169)
...+..+.+|+.+.|.|.+.|. |.|.+.|++++..+..
T Consensus 7 ~~~~~~~~~g~~v~l~C~~~g~--p~p~v~W~~~~~~~~~ 44 (96)
T cd05732 7 YLENQTAVELEQITLTCEAEGD--PIPEITWRRATRNFSE 44 (96)
T ss_pred ecCceeEecCCcEEEEEEEeEc--CCCcEEEEECCcccCC
Confidence 4456788899999999999996 4569999999866543
No 131
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.18 E-value=1.5e-05 Score=50.89 Aligned_cols=61 Identities=25% Similarity=0.358 Sum_probs=40.3
Q ss_pred CcEEEEEEcCcee---EE-EEcc-eeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 3 LAQISWVRHRDIH---LL-TVSG-YTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 3 ~~~V~W~k~~~~~---~~-~~~~-~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
...|.|+|+.... .+ .... .......|+.+......+.+.|.|.+++.+|+|.|.|.+.+.
T Consensus 27 ~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~ 92 (109)
T cd04983 27 FYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSES 92 (109)
T ss_pred ccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 4578999864311 11 1100 011245788765544457889999999999999999998764
No 132
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.17 E-value=3.3e-05 Score=49.18 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=30.3
Q ss_pred CCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEE
Q psy1826 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYL 72 (169)
Q Consensus 27 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l 72 (169)
..|.. +..++ +|.|.+++..|+|.|.|.+.+.......+.+
T Consensus 61 ~gR~~-~~~ng----SL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v 101 (105)
T cd05774 61 SGRET-IYPNG----SLLIQNVTQKDTGFYTLQTITTNFQVEQATV 101 (105)
T ss_pred CCcEE-EeCCC----cEEEecCCcccCEEEEEEEEeCCccEEEEEE
Confidence 35777 45566 9999999999999999999886323333333
No 133
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.16 E-value=1.3e-05 Score=49.65 Aligned_cols=63 Identities=19% Similarity=0.361 Sum_probs=38.8
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC--CCceEEEEEEEe
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT--PPIGISMYLSVV 75 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~l~v~ 75 (169)
..|.|+|++....... ......|+.. . .. .|.|.+++.+|+|.|.|.+.+. +.....++|.|.
T Consensus 25 p~v~Wykq~~g~~~~~---~~~~~~r~~~-~-~~----~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~ 89 (91)
T cd05871 25 ASVKWLFQRGGDQRKE---EVKTEERLIH-T-ER----GLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVI 89 (91)
T ss_pred ceEEEEEECCCCCccc---cccccccEEE-e-cC----eEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEe
Confidence 4789998643211110 0112345552 2 23 7999999999999999999854 334445666654
No 134
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.16 E-value=2.7e-05 Score=50.45 Aligned_cols=36 Identities=28% Similarity=0.524 Sum_probs=27.4
Q ss_pred CCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 28 QRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 28 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.|+.+......++++|.|.+++.+|+|.|.|.+.+.
T Consensus 67 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~ 102 (116)
T cd05715 67 DRVEWVGNPSRKDASIVIHNLQFTDNGTYTCDVKNP 102 (116)
T ss_pred CcEEEecCCcCCeeEEEEeeCCcccCEEEEEEEEeC
Confidence 355533333345679999999999999999999876
No 135
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.15 E-value=1.2e-05 Score=47.95 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=25.3
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
|+.+.|.|.+.|. |.|.++|+++|.++...
T Consensus 1 G~~v~l~C~~~G~--P~p~i~W~k~g~~i~~~ 30 (76)
T cd05867 1 GETARLDCQVEGI--PTPNITWSINGAPIEGT 30 (76)
T ss_pred CCeEEEEEEeeEe--CCCeEEEEECCEECCCC
Confidence 6789999999996 45699999999988654
No 136
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.15 E-value=1.1e-05 Score=48.23 Aligned_cols=59 Identities=20% Similarity=0.297 Sum_probs=35.3
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeeccccccee-ecceeeEEEEEEEEeeEEEEeeeceeeEEEee
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRES-ESSSFVKRLVVLLSVSIVELTWKLEATYILAG 161 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (169)
+.|.|.+.|.| .|.+.|++++.++..+..+... ........+. +-+...+|.+.|.+..
T Consensus 1 v~l~C~v~G~P--~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~------I~~v~~~D~G~Y~C~A 60 (75)
T cd05893 1 VRLECRVSGVP--HPQIFWKKENESLTHNTDRVSMHQDNCGYICLL------IQGATKEDAGWYTVSA 60 (75)
T ss_pred CEEEEEEeEec--CCEEEEEECCEECCCCCCeEEEEEcCCCEEEEE------ECCCCHHHCEEEEEEE
Confidence 47899999964 5699999999988654322111 1111111122 4456667777776654
No 137
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.15 E-value=1.5e-05 Score=47.55 Aligned_cols=59 Identities=22% Similarity=0.374 Sum_probs=35.1
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeeccccccee-ecceeeEEEEEEEEeeEEEEeeeceeeEEEee
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRES-ESSSFVKRLVVLLSVSIVELTWKLEATYILAG 161 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (169)
+.|.|.+.|. |.|.+.|++++.++..+..+... ........+. +.....+|.+.|.+..
T Consensus 1 v~L~C~v~G~--P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~------I~~~~~~D~G~Y~C~a 60 (75)
T cd05744 1 VRLECRVSAI--PPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLL------IQNANKEDAGWYTVSA 60 (75)
T ss_pred CEEEEEEeec--CCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEE------ECCCCcccCEEEEEEE
Confidence 4789999996 45699999999988754322111 1111111222 4455666666666553
No 138
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.13 E-value=1.1e-05 Score=48.38 Aligned_cols=57 Identities=30% Similarity=0.465 Sum_probs=36.9
Q ss_pred cEEEEEEcCce---eEEEEc---ceee---cCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEE
Q psy1826 4 AQISWVRHRDI---HLLTVS---GYTY---TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQV 60 (169)
Q Consensus 4 ~~V~W~k~~~~---~~~~~~---~~~~---~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 60 (169)
..|.|+|.... ..+... ...+ ....|+.+......+.+.|.|.+++.+|+|.|.|.+
T Consensus 16 ~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 16 YYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred eEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 47899986531 112111 1111 234688755544357889999999999999999963
No 139
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.12 E-value=1.6e-05 Score=50.22 Aligned_cols=52 Identities=15% Similarity=0.342 Sum_probs=33.4
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
..|+|+|++....... ..-....|+. .... .|.|.++..+|+|.|.|.+.|.
T Consensus 41 ~~v~WyK~~~~~~~~~--~~~~~~~Ri~--~~~~----~Lwf~Pa~~eDSG~Y~C~~rN~ 92 (104)
T cd05896 41 LSLMWYKSSGDGEEPI--EIIFDGVRMS--KEED----SIWFRPAELQDSGLYTCVLRNS 92 (104)
T ss_pred ceEEEEECCCCCCCCC--cccccceeEE--EeCC----EEEEEeCChhhCeEEEEEECCC
Confidence 4799999863211111 0000012444 2233 8999999999999999999987
No 140
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.12 E-value=3.8e-05 Score=45.99 Aligned_cols=49 Identities=24% Similarity=0.503 Sum_probs=32.1
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCC----CCCeEEEEEEEcC
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQK----RDSGIYECQVSTT 63 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~~~~~ 63 (169)
-.|+|+|++. .+.. ..+.|+.+...++ .|.|..+.. +|+|.|.|.|.|.
T Consensus 13 P~v~W~k~g~--~~~~-----~~~~~~~~~~~~~----~L~i~~~~~~~~~~d~G~Y~C~A~N~ 65 (77)
T cd05875 13 PTFQWTRNGK--FFNV-----AKDPRVSMRRRSG----TLVIDFSGGGRPEDYEGEYQCFARNN 65 (77)
T ss_pred CEEEEEECCE--EccC-----cCCCcEEEeCCCc----eEEEeccCCCCCCCCCEEEEEEEEec
Confidence 4689999873 2211 1234555434444 788887642 4699999999998
No 141
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.11 E-value=1.6e-05 Score=49.59 Aligned_cols=47 Identities=30% Similarity=0.569 Sum_probs=31.5
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCC-CCCCeEEEEEEEcC
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQ-KRDSGIYECQVSTT 63 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~~~ 63 (169)
-+|.|+|++. .+... .+.|+. ..++ .|.|.++. .+|+|.|.|.|.|.
T Consensus 34 P~i~W~k~g~--~l~~~-----~~~~~~--~~~g----~L~i~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05848 34 PTYRWLRNGT--EIDTE-----SDYRYS--LIDG----NLIISNPSEVKDSGRYQCLATNS 81 (94)
T ss_pred CEEEEEECCe--ECccC-----CCceEE--eeCC----eEEEccCCccCcCEEEEEEEEcC
Confidence 3689999874 22110 112333 2334 88999885 69999999999997
No 142
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.10 E-value=1e-05 Score=49.35 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=25.4
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMY 71 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~ 71 (169)
.|.|.+++.+|+|.|.|.+.|. +.....+.
T Consensus 53 ~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~ 83 (85)
T cd05754 53 ILTIRNVQLSDAGTYVCTGSNMLDTDEATAT 83 (85)
T ss_pred EEEECCCCHHHCEEEEEEEeccCCeEeEEEE
Confidence 8999999999999999999997 65555444
No 143
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.08 E-value=2.3e-05 Score=47.18 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=42.0
Q ss_pred CcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEee
Q psy1826 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAG 161 (169)
Q Consensus 85 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (169)
....+.+|+.+.|.|.+.+. ++.+.|++||.++..+...... ...+ .+.....+|.+.|.+..
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~---~~~v~W~k~g~~l~~~~~~~~~-----~~~L------~I~~~~~~DsG~Y~C~a 64 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD---VQSINWTKDGVQLGENNRTRIT-----GEEV------QIKDAVPRDSGLYACVT 64 (79)
T ss_pred CcEEecCCCCEEEEEEecCC---CceEEEeeCCcCCCCCceEEEe-----CCEE------EECCCChhhCEEEEEEE
Confidence 45678899999999999884 3589999999888654322111 1111 13355666777777665
No 144
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.07 E-value=3.1e-05 Score=47.44 Aligned_cols=35 Identities=29% Similarity=0.232 Sum_probs=28.3
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEe
Q psy1826 41 WTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVV 75 (169)
Q Consensus 41 ~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~ 75 (169)
..|.|.+++.+|+|.|.|.+.|. +.....+.|.|.
T Consensus 50 s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~ 85 (86)
T cd05862 50 STLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH 85 (86)
T ss_pred eEEEEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence 38999999999999999999997 555555666554
No 145
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.06 E-value=5.8e-05 Score=45.22 Aligned_cols=51 Identities=20% Similarity=0.416 Sum_probs=31.9
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCC----CCCeEEEEEEEcC-CC
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQK----RDSGIYECQVSTT-PP 65 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~~~~~-~~ 65 (169)
-+|+|+|++. .+.. ..+.++.....++ .|.|..+.. .|+|.|.|.|.|. +.
T Consensus 13 P~i~W~k~g~--~l~~-----~~~~~~~~~~~~g----~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05874 13 PSFSWTRNGT--HFDI-----DKDPKVTMKPNTG----TLVINIMNGEKAEAYEGVYQCTARNERGA 68 (77)
T ss_pred CeEEEEECCe--ECCC-----cCCCCEEEeCCCc----eEEEeccccCCCCCCCEEEEEEEEcCCCe
Confidence 3689999864 2211 1123444333344 777877764 3789999999997 43
No 146
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.06 E-value=6.1e-05 Score=45.44 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=35.9
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeec
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKL 153 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (169)
+.|.|.+.+. .|++.|+|++++.++..... . ...++.....+.|.+...++|
T Consensus 2 ~~L~C~s~~s-kP~a~i~W~k~~~~l~~~~~-~-----~~~~~~~t~~s~L~~~~~~~D 53 (80)
T cd05885 2 VELTCLSPRS-KPAATLRWYRDRKELKGVIS-Q-----QENGKTVSVSNTIRFPVDRKD 53 (80)
T ss_pred EEEEEeCCCc-cCCCeEEEEECCEECCCCcc-c-----ccCCceEEEEEEEEEEeeecc
Confidence 6899999876 68999999999999864321 1 122333335566777777766
No 147
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.06 E-value=2.5e-05 Score=45.80 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=22.8
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYL 72 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l 72 (169)
.|.|.++. |+|.|.|.|.|. +.....+.|
T Consensus 39 ~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 39 VLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred EEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 78899874 899999999998 665555444
No 148
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.05 E-value=2.7e-05 Score=48.23 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=30.1
Q ss_pred CcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeec
Q psy1826 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQL 122 (169)
Q Consensus 85 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 122 (169)
.++.+.+|+.+.|.|.+.|. .|.+.|++++.++..
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~---~p~i~W~kng~~l~~ 45 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ---ATYIWWVNNGSLLVP 45 (91)
T ss_pred CccccccCCcEEEEEEeCCC---CCEEEEEECCEECCC
Confidence 35789999999999999995 469999999988754
No 149
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.05 E-value=6e-05 Score=46.81 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=43.3
Q ss_pred cCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEE-CCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEee
Q psy1826 83 GGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLH-NTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAG 161 (169)
Q Consensus 83 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (169)
.+.+..+.+|+.+.|.|.+.|.| . .+.|++ ++.++..+...... .......+. +-..+.+|.+.|.+..
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P--~-~v~W~k~~g~~~~~~~r~~~~-~~g~~~~L~------I~~v~~~D~G~Y~C~A 75 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEP--E-SIDWYNPQGEKIVSSQRVVVQ-KEGVRSRLT------IYNANIEDAGIYRCQA 75 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeC--C-eEEEEeCCCeEecCCCCEEEE-eCCCeeEEE------EecCChHHCEEEEEEE
Confidence 34567789999999999999964 4 899997 56666443221111 111111222 4455666777777765
Q ss_pred e
Q psy1826 162 T 162 (169)
Q Consensus 162 ~ 162 (169)
.
T Consensus 76 ~ 76 (92)
T cd05866 76 T 76 (92)
T ss_pred E
Confidence 4
No 150
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.05 E-value=8.9e-05 Score=45.67 Aligned_cols=56 Identities=25% Similarity=0.381 Sum_probs=35.6
Q ss_pred CcEEEEEEcCceeEEEE-------cceee--cCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 3 LAQISWVRHRDIHLLTV-------SGYTY--TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 3 ~~~V~W~k~~~~~~~~~-------~~~~~--~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
...|.|+|......... ..... .-..|+.+ ..+. +|.|.+++.+|+|.|.|.+...
T Consensus 15 ~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~-~~~~----sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 15 LQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETI-YPNG----SLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEE-cCCc----eEEEccCCchhcEEEEEEEEcC
Confidence 35789998664322111 00111 11356663 2233 9999999999999999999886
No 151
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.04 E-value=2.4e-05 Score=48.71 Aligned_cols=48 Identities=25% Similarity=0.463 Sum_probs=32.9
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCC-CCCCeEEEEEEEcC-CC
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQ-KRDSGIYECQVSTT-PP 65 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~~~-~~ 65 (169)
-.|+|+|++. .+.. ...|+.. .++ .|.|.++. .+|+|.|.|.|.|. +.
T Consensus 34 P~i~W~k~~~--~i~~------~~~~~~~--~~g----~L~I~~~~~~~D~G~Y~C~A~N~~G~ 83 (93)
T cd05849 34 PIYKWRKNNL--DIDL------TNDRYSM--VGG----NLVINNPDKYKDAGRYVCIVSNIYGK 83 (93)
T ss_pred CEEEEEECCE--EccC------CCCeEEE--ECC----EEEECcCCcCCCCEEEEEEEEeCcce
Confidence 3689999864 2211 1234442 244 89999985 69999999999998 43
No 152
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.04 E-value=5.6e-05 Score=48.93 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=26.8
Q ss_pred CeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 29 RFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 29 r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
|+.+......++.+|.|.+++.+|+|.|.|.+.+.
T Consensus 67 R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~ 101 (115)
T cd05880 67 RVVWDGNIMRRDASILIWQLQPTDNGTYTCQVKNP 101 (115)
T ss_pred eEEEecCCcCCceEEEEeeCChhhCEEEEEEEEeC
Confidence 44433233345678999999999999999999886
No 153
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.04 E-value=1.7e-05 Score=47.03 Aligned_cols=29 Identities=28% Similarity=0.538 Sum_probs=24.2
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEECCEEeec
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEVSQL 122 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 122 (169)
|+.+.|.|.+.|.| .|.+.|++++.++..
T Consensus 1 G~~~~l~C~~~g~P--~p~v~W~k~~~~l~~ 29 (73)
T cd05852 1 GGRVIIECKPKAAP--KPKFSWSKGTELLVN 29 (73)
T ss_pred CCeEEEEEecceeC--CCEEEEEeCCEeccc
Confidence 67899999999964 569999999987653
No 154
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.02 E-value=4.9e-05 Score=46.67 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=46.0
Q ss_pred CCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEeeee
Q psy1826 84 GPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAGTY 163 (169)
Q Consensus 84 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (169)
|.+..+.+|+++.|.|.+.+ |.+.+.|++||.++..+..+... ..+.+ ++.....+|.+.|.+...=
T Consensus 3 P~~~~v~~G~~v~L~C~~~~---~~~~i~W~~ng~~i~~~~~r~~~----~~~~L------~I~nv~~~DsG~Y~C~a~e 69 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS---NLARVVWKFDGKVLTPESAKYLL----YRDGL------LIFNASEADAGRYQCLSVE 69 (87)
T ss_pred cceEEEECCCCEEEEEECCC---CCCeEEEEECCEECCCCCceEEE----ECCcE------EEeCCCHHHCEEEEEEEEe
Confidence 45678899999999999754 45699999999998765322111 11122 2455677778888876654
Q ss_pred e
Q psy1826 164 T 164 (169)
Q Consensus 164 ~ 164 (169)
.
T Consensus 70 ~ 70 (87)
T cd05873 70 K 70 (87)
T ss_pred c
Confidence 3
No 155
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.02 E-value=4.3e-05 Score=47.61 Aligned_cols=49 Identities=24% Similarity=0.495 Sum_probs=32.4
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCC-CCCCeEEEEEEEcC-CC
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQ-KRDSGIYECQVSTT-PP 65 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~~~-~~ 65 (169)
..|+|++++. .+... .+.++.+ ..+ .|.|.++. ..|+|.|.|.|.|. +.
T Consensus 34 p~i~W~~~g~--~l~~~-----~~~~~~~--~~g----~L~I~~~~~~~D~G~Y~C~A~N~~G~ 84 (94)
T cd05850 34 ATYRWKMNGT--EIKFA-----PESRYTL--VAG----NLVINNPQKARDAGSYQCLAINRCGT 84 (94)
T ss_pred CEEEEEECCE--ECccC-----CCceEEE--ECC----eEEEccCCccCcCEEEEEEEEcCcCc
Confidence 4689999874 22110 1234442 234 78898865 69999999999998 54
No 156
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.02 E-value=2.1e-05 Score=46.57 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=37.9
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEeeeee
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAGTYT 164 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (169)
+.|.|.+.|. |+|.+.|++++.++..+.... ... ...+. +...+.+|.+.|.+...+.
T Consensus 1 ~~l~c~v~g~--P~P~v~W~kdg~~l~~~~~~~-~~~---~~~L~------I~~v~~~D~G~YtC~a~~~ 58 (72)
T cd07702 1 YRLTPKVKAF--PAPEVIWLKDGLPAAEKCSRY-HVD---GYSLV------IKDVTEEDAGIYTILLGIK 58 (72)
T ss_pred CeEEeeEEEc--CCCeEEEEECCEECCCCCcEE-EeC---CCEEE------ECcCCHHHCEEEEEEEEcc
Confidence 3689999996 567999999999876532211 110 11222 5567777888888876654
No 157
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.02 E-value=7.7e-05 Score=47.88 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=35.0
Q ss_pred CCeEEEecC-CCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEe
Q psy1826 28 QRFSCIHKP-QNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVV 75 (169)
Q Consensus 28 ~r~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~ 75 (169)
.|+.+.... ..++.+|.|.+++.+|+|.|.|.+... ......+.|+|.
T Consensus 58 gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 58 GRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred cEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 577754311 236779999999999999999999876 455556666654
No 158
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.01 E-value=4.1e-05 Score=45.81 Aligned_cols=27 Identities=22% Similarity=0.511 Sum_probs=22.2
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
+.|.|.+.|. |.|.+.|+++|.++..+
T Consensus 1 v~L~C~~~g~--P~p~v~W~k~g~~l~~~ 27 (77)
T cd05760 1 VTLRCHIDGH--PRPTYQWFRDGTPLSDG 27 (77)
T ss_pred CEEEEEeeec--CCCcEEEEECCEECCCC
Confidence 4789999996 45699999999987654
No 159
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.01 E-value=0.00012 Score=47.14 Aligned_cols=73 Identities=23% Similarity=0.201 Sum_probs=43.9
Q ss_pred CcEEEEEEcCce---eEEEEccee--ec--CCCCeEEEec-CCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEE
Q psy1826 3 LAQISWVRHRDI---HLLTVSGYT--YT--SDQRFSCIHK-PQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLS 73 (169)
Q Consensus 3 ~~~V~W~k~~~~---~~~~~~~~~--~~--~~~r~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~ 73 (169)
...|.|+|...+ .++...... +. -..|+.+... ...+..+|.|.+++.+|+|.|.|.+... ......+.|.
T Consensus 28 ~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~ 107 (112)
T cd05900 28 SPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQ 107 (112)
T ss_pred CCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEE
Confidence 458999986321 122111111 11 1237775331 1235669999999999999999999876 4555555555
Q ss_pred Ee
Q psy1826 74 VV 75 (169)
Q Consensus 74 v~ 75 (169)
|.
T Consensus 108 v~ 109 (112)
T cd05900 108 VK 109 (112)
T ss_pred EE
Confidence 43
No 160
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.01 E-value=0.00021 Score=46.23 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=35.5
Q ss_pred CCeEEEec-CCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEe
Q psy1826 28 QRFSCIHK-PQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVV 75 (169)
Q Consensus 28 ~r~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~ 75 (169)
.|..+... ...++.+|.|.+++.+|+|.|.|.+... ......+.|.|.
T Consensus 65 gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 65 GRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred CcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 47764322 1235679999999999999999999887 556666677664
No 161
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.01 E-value=1.3e-05 Score=50.03 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=34.9
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
..+.|++++....+. .+.|..+...++ .|.|.+|+..|+|.|.|.|.|.
T Consensus 34 p~~~W~k~~~~~~~~-------~d~r~~~~~~~G----~L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 34 LSYRWLLNEFPNFIP-------EDGRRFVSQTNG----NLYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred CEEEEEECCcccccc-------cCCCeEEeCCCC----cEEEeecCHhhCceeEEEEEec
Confidence 578999986321111 123444344456 9999999999999999999986
No 162
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.01 E-value=5.6e-05 Score=48.08 Aligned_cols=37 Identities=41% Similarity=0.604 Sum_probs=30.2
Q ss_pred CCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 27 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
..|+.+........++|.|.+++.+|+|.|.|.+...
T Consensus 65 ~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 65 SGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp TTTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEES
T ss_pred eeeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEEC
Confidence 4577655555567889999999999999999998775
No 163
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.01 E-value=4.2e-05 Score=46.57 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=25.9
Q ss_pred CcEEEEEEeecCCCCCCeeEEEECCEEeeccc
Q psy1826 93 STMNLTCVIKHSPEPPPAIYWLHNTEVSQLNL 124 (169)
Q Consensus 93 ~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~ 124 (169)
+.+.|.|.+.+.|.|...+.|+++|.++..+.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~ 32 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDK 32 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccC
Confidence 46899999999876655789999999887543
No 164
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.00 E-value=4.8e-05 Score=47.38 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=21.0
Q ss_pred CCCCCCCeEEEEEEEcC-CC-ceEEEEEEE
Q psy1826 47 YPQKRDSGIYECQVSTT-PP-IGISMYLSV 74 (169)
Q Consensus 47 ~v~~~D~G~Y~C~~~~~-~~-~~~~~~l~v 74 (169)
.+..+|+|.|.|.+.|. +. .+..+.|.|
T Consensus 70 ~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 70 RKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CCCcCcCEEEEEEEEccccceecceEEEEe
Confidence 44789999999999998 55 555555554
No 165
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.00 E-value=2.2e-05 Score=48.18 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=33.2
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.+|.|.+++. .+.. .+.|+.+ .++ .|.|.+++.+|+|.|.|.+...
T Consensus 25 ~~i~W~~ng~--~i~~------~~~r~~~--~~~----~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 25 ARVVWKFDGK--VLTP------ESAKYLL--YRD----GLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CeEEEEECCE--ECCC------CCceEEE--ECC----cEEEeCCCHHHCEEEEEEEEec
Confidence 4799999874 2221 1135542 234 7999999999999999999875
No 166
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.00 E-value=4.2e-05 Score=46.18 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEE
Q psy1826 40 DWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLS 73 (169)
Q Consensus 40 ~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~ 73 (169)
.+.|.|.++..+|+|.|.|.+.+. +.....+.|.
T Consensus 50 ~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 50 KWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred EEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 347999999999999999999987 5555544443
No 167
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.00 E-value=1.8e-05 Score=48.21 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=21.0
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.|.|.+++.+|+|.|.|.+.+.
T Consensus 49 ~l~I~~~~~~dsG~Y~C~~~~~ 70 (83)
T cd05753 49 NLSIPQATLSDSGSYHCSGIIG 70 (83)
T ss_pred eEEECccCHHHCEEEEEEEEeC
Confidence 7999999999999999999887
No 168
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=97.99 E-value=5.2e-05 Score=44.85 Aligned_cols=28 Identities=21% Similarity=0.508 Sum_probs=22.9
Q ss_pred cEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 94 TMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 94 ~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
.+.|.|.+.|. |.|.+.|+++|.++..+
T Consensus 1 ~~~l~c~~~G~--P~p~v~W~k~g~~l~~~ 28 (74)
T cd05748 1 SVRLEVPISGR--PTPTVTWSKDGKPLKLS 28 (74)
T ss_pred CEEEEeeEeee--CCCeEEEEECCEEcCCC
Confidence 36899999996 46699999999988543
No 169
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.98 E-value=2.8e-05 Score=46.18 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=25.6
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEECCEEeeccc
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNL 124 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~ 124 (169)
|+.+.|.|.+.|. |.|.+.|++++.++....
T Consensus 1 G~~~~l~C~~~g~--P~p~i~W~~~g~~~~~~~ 31 (76)
T cd04978 1 GETGRLDCEAEGI--PQPTITWRLNGVPIEELP 31 (76)
T ss_pred CCeEEEEEEceee--CCCEEEEEECCEECCCCC
Confidence 6789999999996 456999999999876543
No 170
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=97.98 E-value=2.2e-05 Score=47.04 Aligned_cols=28 Identities=25% Similarity=0.618 Sum_probs=22.6
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeeccc
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLNL 124 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~ 124 (169)
+.|.|.+.|. |.|.++|++++.++....
T Consensus 1 ~~l~C~a~G~--P~P~i~W~k~g~~l~~~~ 28 (77)
T cd05874 1 IVIQCEAKGK--PPPSFSWTRNGTHFDIDK 28 (77)
T ss_pred CEEEeeCccc--CCCeEEEEECCeECCCcC
Confidence 4689999996 567999999999875443
No 171
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.98 E-value=5.3e-05 Score=47.49 Aligned_cols=61 Identities=23% Similarity=0.320 Sum_probs=37.7
Q ss_pred EEEEEEcCceeEEEEcceeecCCCCeEEEecC--CCCeEEEEEcCCCCCC-CeEEEEEEEcC-CCceEEEEE
Q psy1826 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKP--QNEDWTLQIKYPQKRD-SGIYECQVSTT-PPIGISMYL 72 (169)
Q Consensus 5 ~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~l 72 (169)
.|.|++++. .+... .+.|+.+.... ......|.|.++..+| .|.|.|.|.|. +.....++|
T Consensus 33 ~v~W~~~~~--~i~~~-----~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 33 RIVWTWKEN--ELESG-----SSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EeEEEECCE--EccCC-----CCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence 589998763 22110 12355533211 0112379999999955 89999999998 766665554
No 172
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.98 E-value=3.3e-05 Score=44.23 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=29.8
Q ss_pred CcEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEE
Q psy1826 3 LAQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQV 60 (169)
Q Consensus 3 ~~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 60 (169)
...+.|.|++........... ..........|.|.+++.+|+|.|.|.|
T Consensus 16 ~~~~~W~~~~~~~~~~~~~~~---------~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 16 PTTVTWSKNGQSLPEGSTTNR---------STNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEETTTTTSEEEEEEE---------EETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CcEEEEEECCccccCcceeEe---------ecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 457999998753332221111 1111100013999999999999999986
No 173
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.98 E-value=7.7e-05 Score=46.87 Aligned_cols=43 Identities=26% Similarity=0.492 Sum_probs=34.3
Q ss_pred eeecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 80 QIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 80 ~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
.+.....+.+.+|+++.|.|.+.+.| ||..|.|..++..+...
T Consensus 4 ~i~~~~s~~~~~G~~~~L~C~~~s~P-~P~~i~W~w~~~~i~~~ 46 (98)
T cd05898 4 IISSEQVQYAVRGERGKVKCFIGSTP-PPDRIAWAWKENVLESG 46 (98)
T ss_pred EEecCceEEEeCCCcEEEEEEEccCC-CCcEEEEEEccccccCC
Confidence 34666788899999999999998876 45688999887766554
No 174
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.96 E-value=4.8e-05 Score=48.01 Aligned_cols=37 Identities=35% Similarity=0.534 Sum_probs=29.5
Q ss_pred CCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 27 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
..|+.+......+.++|.|.+++.+|+|.|.|.+.+.
T Consensus 53 ~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~ 89 (105)
T cd00099 53 KGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLS 89 (105)
T ss_pred CCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 4677755443336789999999999999999999875
No 175
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=97.95 E-value=2.7e-05 Score=45.42 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=33.6
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEeee
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAGT 162 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
+.|.|.+.|. |+|.+.|++||.++.... ..+.+. +.....+|.+.|.+...
T Consensus 1 ~~l~c~v~g~--P~P~v~W~kdg~~l~~~~---------~~~~L~------i~~v~~~D~G~YtC~a~ 51 (67)
T cd05863 1 VKLPVKVAAY--PPPEFQWYKDGKLISGKH---------SQHSLQ------IKDVTEASAGTYTLVLW 51 (67)
T ss_pred CEEEEEEEEe--CCCEEEEEECCEECcccC---------CcCEEE------ECCCCHHHCEEEEEEEE
Confidence 4789999996 567999999999986321 011222 45556666666666553
No 176
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=97.95 E-value=0.00015 Score=43.67 Aligned_cols=35 Identities=29% Similarity=0.552 Sum_probs=28.6
Q ss_pred EEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 87 MYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 87 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
+.+..|+.+.|.|.+.+. |.+.+.|++++..+..+
T Consensus 4 ~~~~~G~~~~l~C~~~~~--p~~~v~W~k~~~~~~~~ 38 (85)
T cd05729 4 HAVPAGSTVRLKCPASGN--PRPTITWLKDGKPFKKE 38 (85)
T ss_pred eEecCCCcEEEEEEcCCC--CCCeEEEEECCEECccc
Confidence 456789999999999986 45699999999877543
No 177
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=97.95 E-value=6.6e-05 Score=44.97 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=24.6
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
|+.+.|.|.+.|. |.|.+.|++++.++..+
T Consensus 1 G~~v~l~C~~~g~--P~p~v~W~~~~~~~~~~ 30 (78)
T cd05743 1 GETVEFTCVATGV--PTPIINWRLNWGHVPDS 30 (78)
T ss_pred CCEEEEEEEEEEe--cCCEEEEEECCeECCCC
Confidence 6789999999996 45799999998876543
No 178
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.95 E-value=7.1e-05 Score=43.98 Aligned_cols=27 Identities=19% Similarity=0.598 Sum_probs=22.4
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
+.|.|.+.|. |.|.++|++++.++...
T Consensus 2 v~l~C~~~G~--P~p~v~W~k~g~~~~~~ 28 (71)
T cd05723 2 VIFECEVTGK--PTPTVKWVKNGDMVIPS 28 (71)
T ss_pred EEEEEEEEEe--CCCEEEEEECCeECCCC
Confidence 6899999996 46799999999887543
No 179
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=97.94 E-value=8.8e-05 Score=47.53 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=25.9
Q ss_pred CCCcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 91 KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 91 ~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
.|..+.|.|.+.|. |+|.++|++++.++...
T Consensus 22 ~g~~v~L~C~a~G~--P~p~i~W~k~g~~l~~~ 52 (109)
T cd05773 22 GSSDANLVCQAQGV--PRVQFRWAKNGVPLDLG 52 (109)
T ss_pred CCCEEEEEEECccc--CCCEEEEEECCEECCCC
Confidence 46789999999996 45799999999988643
No 180
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=97.92 E-value=5.6e-05 Score=45.36 Aligned_cols=35 Identities=29% Similarity=0.557 Sum_probs=28.3
Q ss_pred EEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 87 MYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 87 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
+.+..|+.+.|.|.+.+.| .|.+.|++++..+...
T Consensus 4 ~~~~~G~~v~L~C~~~g~p--~p~i~W~k~~~~~~~~ 38 (82)
T cd05856 4 IARPVGSSVRLKCVASGNP--RPDITWLKDNKPLTPT 38 (82)
T ss_pred eeccCCCeEEEEEEeeEeC--CCcEEEEECCcCCcCC
Confidence 4566799999999999964 5689999999877543
No 181
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=97.91 E-value=0.00013 Score=45.57 Aligned_cols=34 Identities=21% Similarity=0.483 Sum_probs=28.2
Q ss_pred CcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEe
Q psy1826 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVS 120 (169)
Q Consensus 85 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~ 120 (169)
.++.+.+|+++.|.|.+.+.| .|.+.|++++..+
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~--~~~v~W~k~~~~~ 38 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHD--NSSLQWSNTAQQT 38 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCC--CCeEEEeccCccE
Confidence 467889999999999999964 5699999877643
No 182
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.91 E-value=6.7e-05 Score=48.81 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=39.6
Q ss_pred CcEEEEEEcCcee---E-EEEccee--e--cCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 3 LAQISWVRHRDIH---L-LTVSGYT--Y--TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 3 ~~~V~W~k~~~~~---~-~~~~~~~--~--~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
...+.|+|+.... . ....... . ....|+.+..+...+.++|.|.+++.+|+|.|.|.+...
T Consensus 34 ~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 34 GVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 3568999975321 1 1111110 0 123588865444567889999999999999999988653
No 183
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.90 E-value=4.6e-05 Score=47.52 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=27.5
Q ss_pred CCCeEEEec-CCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 27 DQRFSCIHK-PQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 27 ~~r~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
++|+..... ...+.++|.|.+++.+|+|.|.|.+.+.
T Consensus 50 ~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~~ 87 (94)
T cd07690 50 NDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICEVEDK 87 (94)
T ss_pred CCCCceecccCCCCeEEEEECCCCHHHCEEEEEEECCc
Confidence 455553321 1346678999999999999999999874
No 184
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.90 E-value=9.9e-05 Score=46.17 Aligned_cols=62 Identities=19% Similarity=0.339 Sum_probs=40.1
Q ss_pred CcEEEEEEcCcee---EEEE-cceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcCC
Q psy1826 3 LAQISWVRHRDIH---LLTV-SGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64 (169)
Q Consensus 3 ~~~V~W~k~~~~~---~~~~-~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 64 (169)
...+.|+|+.... .+.. .........|+.+......+.+.|.|.+++.+|+|.|.|.+...+
T Consensus 22 ~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 22 SYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred CcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 4568999875322 1110 011112346787544444577899999999999999999987753
No 185
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=97.90 E-value=7.5e-05 Score=43.73 Aligned_cols=29 Identities=34% Similarity=0.673 Sum_probs=24.5
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEECCEEeec
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEVSQL 122 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 122 (169)
|+.+.|.|.+.|. |.|.+.|++++.++..
T Consensus 1 G~~v~L~C~a~G~--P~P~v~W~k~g~~l~~ 29 (69)
T cd05739 1 GGSVNLTCVAVGA--PMPYVKWMKGGEELTK 29 (69)
T ss_pred CCeEEEEEEeeec--CCCEEEEEECCEECCC
Confidence 6789999999996 4569999999988754
No 186
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=97.90 E-value=9.5e-05 Score=45.44 Aligned_cols=30 Identities=13% Similarity=0.441 Sum_probs=25.6
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
|+.+.|.|.+.|. |++.+.|++++.++..+
T Consensus 1 g~~~~l~C~~~g~--p~~~i~W~k~~~~i~~~ 30 (88)
T cd05735 1 GQKKEMSCTAHGE--KPIIVRWEKEDRIINPE 30 (88)
T ss_pred CCeEEEEEEEECC--CCCEEEEeeCCEECCCC
Confidence 6889999999996 56799999999887654
No 187
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.89 E-value=7.6e-05 Score=46.75 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=36.6
Q ss_pred cEEEEEEcCceeEE---EEccee--ecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEc
Q psy1826 4 AQISWVRHRDIHLL---TVSGYT--YTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62 (169)
Q Consensus 4 ~~V~W~k~~~~~~~---~~~~~~--~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 62 (169)
..|.|+|+..+..+ -..... -...+|+.... . ...+.|.|.+++.+|+|.|.|.+.+
T Consensus 23 ~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~-~-~~~~~L~I~~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 23 NYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK-S-GNTASLTISGAQTEDEADYYCQVWD 84 (98)
T ss_pred CCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc-c-CCEEEEEECCCChhhCEEEEEEEcc
Confidence 46899997642221 111100 01245777533 2 3677899999999999999998865
No 188
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.89 E-value=0.00017 Score=44.46 Aligned_cols=44 Identities=23% Similarity=0.331 Sum_probs=31.0
Q ss_pred ceeeecCCcEEEc---CCCcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 78 ITQIIGGPDMYIN---KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 78 p~~~~~~~~~~v~---~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
|.++..+.+..+. .+..+.|.|.+.|. |.|.++|++++..+...
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~--p~p~i~W~k~~~~l~~~ 48 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGS--PPPTYRWLMNGTEIDDE 48 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEc--CCCEEEEEECCEECCCC
Confidence 3444455554443 34579999999986 56799999999988543
No 189
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=97.86 E-value=3.8e-05 Score=45.93 Aligned_cols=27 Identities=26% Similarity=0.593 Sum_probs=22.2
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
+.|.|.+.|. |+|.++|++|+.++...
T Consensus 1 i~l~C~~~G~--P~P~v~W~k~g~~l~~~ 27 (77)
T cd05733 1 IVIKCEAKGN--PPPTFSWTRNGTHFDPE 27 (77)
T ss_pred CEEEeeCccc--CCCeEEEEECCeECCCC
Confidence 4689999996 56799999999988654
No 190
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.85 E-value=6e-05 Score=44.72 Aligned_cols=23 Identities=26% Similarity=0.627 Sum_probs=18.8
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEE
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEV 119 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~ 119 (169)
+.|.|.+.|. |.|.++|++++..
T Consensus 1 a~l~C~~~G~--P~P~v~W~k~~~~ 23 (75)
T cd05763 1 ARLECAATGH--PTPQIAWQKDGGT 23 (75)
T ss_pred CEeEeecccc--cCCEEEEEeCCCc
Confidence 3689999996 5669999998864
No 191
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.85 E-value=0.00013 Score=44.28 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=44.5
Q ss_pred ecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEee
Q psy1826 82 IGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAG 161 (169)
Q Consensus 82 ~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (169)
+.++...+.+|+++.|.|.+.+. .+.+.+.|++++..+..... ...+. +...+.+|.+.|.+.+
T Consensus 4 l~~p~~~V~~G~~vtL~C~~~~~-~~~~~~~w~k~g~~~~~~~~---------~~~l~------I~~~~~~dsG~Y~C~~ 67 (83)
T cd05753 4 LQVPSRVVFEGEPLVLRCHGWKN-KPVYKVTYYRDGKAKKYSHS---------NSNLS------IPQATLSDSGSYHCSG 67 (83)
T ss_pred EECCcceecCCCCEEEEeeCCCC-CcceEEEEEECCeEccccCC---------CceEE------ECccCHHHCEEEEEEE
Confidence 34445578899999999998653 35568999999986643110 11111 3445667778888877
Q ss_pred eeec
Q psy1826 162 TYTN 165 (169)
Q Consensus 162 ~~~~ 165 (169)
....
T Consensus 68 ~~~~ 71 (83)
T cd05753 68 IIGS 71 (83)
T ss_pred EeCC
Confidence 6543
No 192
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.84 E-value=5.8e-05 Score=47.06 Aligned_cols=37 Identities=16% Similarity=0.379 Sum_probs=28.7
Q ss_pred CcEEEcCCCcEEEEEEeecCC---CCCCeeEEEECCEEee
Q psy1826 85 PDMYINKGSTMNLTCVIKHSP---EPPPAIYWLHNTEVSQ 121 (169)
Q Consensus 85 ~~~~v~~g~~~~l~C~~~~~p---~p~~~i~W~~~~~~~~ 121 (169)
....+.+|+.+.|.|.+.+.+ .|.|.+.|++++.++.
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~ 46 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTP 46 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCc
Confidence 356677999999999998832 2566899999987654
No 193
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.84 E-value=8.6e-05 Score=47.99 Aligned_cols=61 Identities=23% Similarity=0.243 Sum_probs=39.6
Q ss_pred CcEEEEEEcCceeEEE---Ecce--eecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 3 LAQISWVRHRDIHLLT---VSGY--TYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 3 ~~~V~W~k~~~~~~~~---~~~~--~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
...|.|+|+.....+. .... .....+|+.+......+.++|.|.+++.+|+|.|.|.+...
T Consensus 29 ~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 29 NYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCALSTL 94 (116)
T ss_pred ceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEECC
Confidence 4579999964321111 1001 11224788865433456789999999999999999998753
No 194
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.83 E-value=9.2e-05 Score=45.08 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=26.7
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcC-C--CceEEEEEEE
Q psy1826 41 WTLQIKYPQKRDSGIYECQVSTT-P--PIGISMYLSV 74 (169)
Q Consensus 41 ~~L~I~~v~~~D~G~Y~C~~~~~-~--~~~~~~~l~v 74 (169)
..|.|.+++.+|+|.|.|.+.+. . .....+.|+|
T Consensus 46 s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V 82 (84)
T cd05861 46 STLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITV 82 (84)
T ss_pred EEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEE
Confidence 38999999999999999999886 3 3444555554
No 195
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=97.83 E-value=5.1e-05 Score=44.65 Aligned_cols=27 Identities=30% Similarity=0.616 Sum_probs=22.5
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
+.|.|.+.|. |+|.+.|+++|.++..+
T Consensus 1 ~~l~c~v~g~--P~p~v~W~k~g~~l~~~ 27 (71)
T cd04976 1 VRLPVKVKAY--PPPEIQWYKNGKLISEK 27 (71)
T ss_pred CEEEeEEEEe--CCCEEEEEECCEECCCC
Confidence 4689999996 46799999999988654
No 196
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.83 E-value=4.3e-05 Score=45.94 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=19.1
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.|.|.++ .+|+|.|.|.+.+.
T Consensus 48 ~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 48 SYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eEEEeec-ccCCEEeEEECCCC
Confidence 7899999 99999999999874
No 197
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.82 E-value=0.00015 Score=46.29 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=27.3
Q ss_pred CCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEc
Q psy1826 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62 (169)
Q Consensus 27 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 62 (169)
++|+.+........+.|.|.+++.+|+|.|.|....
T Consensus 58 ~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 58 QEKFSIRVTSDSSRYRLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred cCcEEEEEECCCCEEEEEECCCCHHHCEEEEEeEcC
Confidence 357765333334567899999999999999998754
No 198
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=97.82 E-value=0.0001 Score=43.48 Aligned_cols=30 Identities=30% Similarity=0.593 Sum_probs=24.9
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
|+.+.|.|.+.|. |.|.++|++++..+..+
T Consensus 1 G~~v~L~C~~~g~--P~p~v~W~k~~~~~~~~ 30 (73)
T cd04969 1 GGDVIIECKPKAA--PKPTISWSKGTELLTNS 30 (73)
T ss_pred CCeEEEEEeeeEc--CCCEEEEEECCEEcccC
Confidence 6789999999996 46799999999887543
No 199
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=97.82 E-value=6.7e-05 Score=54.39 Aligned_cols=48 Identities=27% Similarity=0.490 Sum_probs=34.5
Q ss_pred CcEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 3 LAQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 3 ~~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.-+|+|+|++. .+. .+.|+.+....+ .|.|.+++.+|+|.|.|.+...
T Consensus 163 ~p~I~WyKng~-~l~--------~~~r~~~~~~~~----~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 163 DYTLTWYKNGN-IVL--------YTDRIQLRNNNS----TLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred CceEEEEECCE-ECC--------CCCCEEEeCCCC----EEEECcCCHHhCEEEEEEEEEe
Confidence 35799999874 221 123555333333 8999999999999999999774
No 200
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.81 E-value=0.0003 Score=44.33 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=45.1
Q ss_pred eecCCcEEEcCCCcEEEEEEeecCCCCCCe--eEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeec-eeeE
Q psy1826 81 IIGGPDMYINKGSTMNLTCVIKHSPEPPPA--IYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKL-EATY 157 (169)
Q Consensus 81 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~--i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 157 (169)
.+.+....+.+|+.+.|.|.+.+. .|.+. |.|++++..+....... . ........+++.+...++| .+.+
T Consensus 5 ~l~~~p~~~~eG~~~tL~C~v~g~-~P~a~L~i~W~rG~~~l~~~~~~~-~-----~~~~~~~~stlt~~~~r~D~g~~~ 77 (100)
T cd05755 5 ELSPLPSWQPVGKNYTLQCDVPGV-APRQNLTVVLLRGNETLSRQPFGD-N-----TKSPVNAPATITITVDREDHGANF 77 (100)
T ss_pred EEecCCCcccCCCcEEEEEEEcCc-CCCCcEEEEEeeCCEEcccceecc-c-----cCCCceeEEEEEEecchhhCCcEE
Confidence 334444456799999999999986 46665 79999998885432111 0 1112223345566677777 4455
Q ss_pred EEee
Q psy1826 158 ILAG 161 (169)
Q Consensus 158 ~~~~ 161 (169)
++..
T Consensus 78 sC~A 81 (100)
T cd05755 78 SCET 81 (100)
T ss_pred EEEE
Confidence 5443
No 201
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.81 E-value=0.00013 Score=47.16 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=28.4
Q ss_pred CCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEc
Q psy1826 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62 (169)
Q Consensus 27 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 62 (169)
..|+.+........+.|.|.+++.+|+|.|.|.+..
T Consensus 63 ~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 63 KNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred CCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence 468875544323678999999999999999999865
No 202
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.80 E-value=0.00016 Score=43.78 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=35.9
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeec
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKL 153 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (169)
+.|.|.+.|. +|++.|+|++++.++....... ..........+.|.+..+++|
T Consensus 2 ~~L~C~s~gS-kP~A~I~W~k~~~~l~~~~~~~-----~~~~~~~t~~S~L~~~p~~eD 54 (82)
T cd05883 2 IELNCTAMAS-KPAATIRWFKGNKELTGKSTVE-----ETWSRMFTVTSQLMLKVTKED 54 (82)
T ss_pred EEEEEEecCC-CCCCEEEEEECCEECcCcccce-----eccCCCcEEEEEEEEECchhh
Confidence 6899999987 6899999999999986542111 112222344566677777766
No 203
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.77 E-value=0.00015 Score=46.42 Aligned_cols=36 Identities=31% Similarity=0.426 Sum_probs=27.8
Q ss_pred CCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 27 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.+|+...... ...+.|.|.+++.+|+|.|.|.+...
T Consensus 59 ~~r~~~~~~~-~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 59 KDRFSASRPS-LTRSSLTIKSAEPEDSAVYLCASSLG 94 (110)
T ss_pred CCceEEECcC-CCccEEEECCCChhhCEEEEEEeeCC
Confidence 4677754432 25678999999999999999998764
No 204
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=97.76 E-value=0.00014 Score=43.98 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=21.9
Q ss_pred EEEEEeecCCCCCCeeEEEECCEEeeccc
Q psy1826 96 NLTCVIKHSPEPPPAIYWLHNTEVSQLNL 124 (169)
Q Consensus 96 ~l~C~~~~~p~p~~~i~W~~~~~~~~~~~ 124 (169)
.+.|.+.|. |.|.++|++||.++..+.
T Consensus 2 ~i~~~v~G~--P~P~v~W~k~g~~i~~~~ 28 (81)
T cd04971 2 CIPFTVRGN--PKPTLTWYHNGAVLNESD 28 (81)
T ss_pred eEEEEeEee--CCCcEEEEECCEECcCCC
Confidence 367999996 456999999999987654
No 205
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.76 E-value=0.00011 Score=45.36 Aligned_cols=47 Identities=26% Similarity=0.498 Sum_probs=31.3
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCC-CCCCeEEEEEEEcC
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQ-KRDSGIYECQVSTT 63 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~~~ 63 (169)
..|+|+|++. .+... ...++.. .++ .|.|.++. .+|+|.|.|.+.|.
T Consensus 34 p~i~W~k~~~-~l~~~------~~~~~~~--~~~----~L~i~~~~~~~d~G~Y~C~a~N~ 81 (91)
T cd04967 34 PTYRWLMNGT-EIDDE------PDSRYSL--VGG----NLVISNPSKAKDAGRYQCLASNI 81 (91)
T ss_pred CEEEEEECCE-ECCCC------CCCCEEE--ECC----EEEEecCCccCCCEEEEEEEEcC
Confidence 4789998763 12110 1234442 234 78998887 59999999999987
No 206
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=97.75 E-value=0.00017 Score=44.06 Aligned_cols=31 Identities=16% Similarity=0.401 Sum_probs=26.7
Q ss_pred CcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 93 STMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 93 ~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
+++.|.|.+.+.|.+++.+.|++||.++.++
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~ 31 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQ 31 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECccc
Confidence 3578999999877788999999999999754
No 207
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.75 E-value=0.00029 Score=42.65 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=38.1
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeec-eeeEEEe
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKL-EATYILA 160 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 160 (169)
+.|.|.+.+. .|++.++|++++.++.... ..... ..++.+...+.+.+..++.| +..|.+.
T Consensus 2 ~~L~C~~~~~-~P~~~v~W~~~~~~l~~~~---~~~~~-~~~~~~~~~s~l~~~~~~~d~g~~~~C~ 63 (82)
T cd05761 2 VELTCTSSGS-KPAATIRWFKGDKELKGVK---LKEED-ENGKTFTVTSSLRFQVDREDDGAPIICR 63 (82)
T ss_pred EEEEEEecCc-CcCCeEEEEECCEEccCce---eeEec-CCCCEEEEEEEEEEEcchhhCCCEEEEE
Confidence 6899999886 4678999999999886332 11111 12235555667777766655 3444443
No 208
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=97.75 E-value=0.00012 Score=43.79 Aligned_cols=27 Identities=22% Similarity=0.545 Sum_probs=21.9
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
+.|.|.+.|. |.|.++|++++.++...
T Consensus 1 ~~l~C~~~G~--P~P~v~W~k~g~~~~~~ 27 (77)
T cd05875 1 IIIECEAKGN--PVPTFQWTRNGKFFNVA 27 (77)
T ss_pred CEEEEecccc--CCCEEEEEECCEEccCc
Confidence 3689999996 56799999999877543
No 209
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=97.75 E-value=8e-05 Score=43.48 Aligned_cols=27 Identities=19% Similarity=0.489 Sum_probs=21.8
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
+.|.|.+.|.| .|.+.|++++.++...
T Consensus 1 v~L~C~~~g~P--~p~i~W~k~g~~~~~~ 27 (69)
T cd05746 1 VQIPCSAQGDP--EPTITWNKDGVQVTES 27 (69)
T ss_pred CEeEecceEeC--CCEEEEEECCEECCCC
Confidence 46899999964 5699999999887543
No 210
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=97.74 E-value=5.8e-05 Score=44.74 Aligned_cols=26 Identities=19% Similarity=0.502 Sum_probs=21.7
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeec
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQL 122 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 122 (169)
+.|.|.+.|. |.|.+.|++++.++..
T Consensus 1 a~l~C~~~G~--P~p~v~W~k~~~~~~~ 26 (74)
T cd05738 1 ATMLCAASGN--PDPEITWFKDFLPVDT 26 (74)
T ss_pred CEEEEEEeEe--cCCEEEEEECCEECcc
Confidence 3689999996 5679999999998764
No 211
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=97.74 E-value=0.00024 Score=43.80 Aligned_cols=24 Identities=29% Similarity=0.740 Sum_probs=20.2
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEECC
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHNT 117 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~~ 117 (169)
|+.+.|.|.+.|.| .|.|+|++++
T Consensus 1 G~~v~l~C~v~g~P--~P~i~W~k~~ 24 (90)
T cd04974 1 GSDVEFHCKVYSDA--QPHIQWLKHV 24 (90)
T ss_pred CCcEEEEEEEeCCC--CCeEEEEEec
Confidence 67899999999965 5699999863
No 212
>smart00409 IG Immunoglobulin.
Probab=97.74 E-value=0.00048 Score=40.81 Aligned_cols=61 Identities=23% Similarity=0.400 Sum_probs=38.1
Q ss_pred CcEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEE
Q psy1826 3 LAQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLS 73 (169)
Q Consensus 3 ~~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~ 73 (169)
...+.|++++...+. ...++...... ....|.|.+++..|+|.|.|.+.+. +.....+.|.
T Consensus 23 ~~~~~W~~~~~~~v~--------~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~ 84 (86)
T smart00409 23 PPEVTWYKQGGKLLA--------ESGRFSVSRSG--SNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT 84 (86)
T ss_pred CCeEEEEECCCEEcC--------CCCcEEEEEcC--CeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence 457899987221221 22455533322 1448999999999999999999976 4333334443
No 213
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.74 E-value=0.00048 Score=40.81 Aligned_cols=61 Identities=23% Similarity=0.400 Sum_probs=38.1
Q ss_pred CcEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEE
Q psy1826 3 LAQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLS 73 (169)
Q Consensus 3 ~~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~ 73 (169)
...+.|++++...+. ...++...... ....|.|.+++..|+|.|.|.+.+. +.....+.|.
T Consensus 23 ~~~~~W~~~~~~~v~--------~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~ 84 (86)
T smart00410 23 PPEVTWYKQGGKLLA--------ESGRFSVSRSG--SNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT 84 (86)
T ss_pred CCeEEEEECCCEEcC--------CCCcEEEEEcC--CeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence 457899987221221 22455533322 1448999999999999999999976 4333334443
No 214
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=97.73 E-value=0.00018 Score=42.45 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=22.6
Q ss_pred EEEEEEeec-CCCCCCeeEEEECCEEeeccc
Q psy1826 95 MNLTCVIKH-SPEPPPAIYWLHNTEVSQLNL 124 (169)
Q Consensus 95 ~~l~C~~~~-~p~p~~~i~W~~~~~~~~~~~ 124 (169)
+.|.|.+.| . |+|.+.|++++.++....
T Consensus 1 ~~l~C~~~g~~--P~p~~~W~k~g~~l~~~~ 29 (75)
T cd05750 1 LVLKCEATSEY--PSLRFKWFKDGKELNRKN 29 (75)
T ss_pred CEEEEEccCCC--CCceEEEEcCCeeccccC
Confidence 368999998 5 457999999999887544
No 215
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.73 E-value=0.00013 Score=46.30 Aligned_cols=59 Identities=27% Similarity=0.414 Sum_probs=36.9
Q ss_pred CcEEEEEEcCcee---EEEEccee--ecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 3 LAQISWVRHRDIH---LLTVSGYT--YTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 3 ~~~V~W~k~~~~~---~~~~~~~~--~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
...+.|+|+..+. .+...... .....|+.... . ...+.|.|.+++.+|+|.|.|.+.+.
T Consensus 30 ~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~-~-~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 30 SNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG-S-GTDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred CCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec-c-CCEEEEEECCCChHHCEEEEEEEeCC
Confidence 3568999875321 11111111 11235777432 2 35678999999999999999998653
No 216
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.72 E-value=0.00047 Score=41.90 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=37.5
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeec-eeeEEEee
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKL-EATYILAG 161 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 161 (169)
+.|.|.+.+. .|+..|+|+++|..+.......... .....+...+.+.+..++.| +..|.+..
T Consensus 2 ~~LtC~a~gf-~P~~~itW~kng~~l~~~~~~~~~~---~~~~t~~~~s~L~~~~~~~d~g~~ytC~v 65 (83)
T cd05884 2 MQLTCKTSGS-KPAADIRWFKNDKEIKDVKYLKEED---ANRKTFTVSSTLDFRVDRSDDGVAIICRV 65 (83)
T ss_pred EEEEEEeCCc-cCCCEEEEEECCEECcCceeeEeeC---CCCCEEEEEEEEEEEcccccCCCEEEEEE
Confidence 5799999987 5679999999999975432211111 11234445566666655433 44444433
No 217
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=97.71 E-value=9.5e-05 Score=43.46 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=22.0
Q ss_pred EEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 96 NLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 96 ~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
.|.|.+.|. |+|.+.|++||.++...
T Consensus 2 ~~~c~v~G~--P~P~v~W~k~g~~l~~~ 27 (70)
T cd05864 2 KIPVKYYGY--PPPEVKWYKNGQLIVLN 27 (70)
T ss_pred EEEeEEEEe--CCCEEEEEECCEECCCC
Confidence 689999996 56799999999998653
No 218
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.70 E-value=0.00042 Score=43.02 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=30.5
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCC-----CCCCCeEEEEEEEcC
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYP-----QKRDSGIYECQVSTT 63 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v-----~~~D~G~Y~C~~~~~ 63 (169)
..|.|+|++. .+... .+.++. ...++ .|.|.++ ...|+|.|.|.+.|.
T Consensus 29 p~i~W~k~g~--~l~~~-----~~~~~~-~~~~~----~l~i~~v~~~~~~~~D~G~Y~C~a~N~ 81 (95)
T cd05722 29 PKIEWKKDGV--LLNLV-----SDERRQ-QLPNG----SLLITSVVHSKHNKPDEGFYQCVAQND 81 (95)
T ss_pred CEEEEEECCe--ECccc-----cCcceE-EccCC----eEEEeeeeccCCCCCcCEEEEEEEECC
Confidence 5789999874 22110 112333 23334 6777666 589999999999997
No 219
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.67 E-value=0.00019 Score=44.04 Aligned_cols=66 Identities=17% Similarity=0.190 Sum_probs=42.4
Q ss_pred CcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccc--cceeecceeeEEEEEEEEeeEEEEeeeceeeEEEeee
Q psy1826 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLM--QRESESSSFVKRLVVLLSVSIVELTWKLEATYILAGT 162 (169)
Q Consensus 85 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
..+.+.+|+.+.|.|.+.+ |.+.+.|++++..+..... .+.... ...+. +...+.+|.+.|.+...
T Consensus 4 ~~~~v~~g~~v~L~C~~~~---p~~~i~W~k~~~~~~~~~~~~~~~~~~---~~~L~------I~~~~~~D~G~Y~C~a~ 71 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS---NLASVVWLFQGGPLQRKEEPEERLLVT---EDGLL------IRSVSPADAGVYTCQSV 71 (89)
T ss_pred eEEEEECCCcEEEEEeCCC---CCceEEEEECCcccccccCcCceEEEc---CCCEE------EccCCHHHCEEEEEEEe
Confidence 4567889999999999866 4569999999887654321 111110 11111 34566677888888764
No 220
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=97.67 E-value=0.00015 Score=45.00 Aligned_cols=66 Identities=12% Similarity=0.137 Sum_probs=42.7
Q ss_pred EEEcCCCcEEEEEEeecCC---CCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEeeee
Q psy1826 87 MYINKGSTMNLTCVIKHSP---EPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAGTY 163 (169)
Q Consensus 87 ~~v~~g~~~~l~C~~~~~p---~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (169)
+.+.+|..+.|.|...+.+ .|.|.+.|++++.++..+..... ..+.+. +..+..+|.+.|.+...+
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-----~~~~L~------I~~v~~~DsG~YtC~~~n 73 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-----KGSKLL------IQNVTEEDAGNYTCKLTF 73 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-----cCCEEE------EeeCChhhCEEEEEEEEe
Confidence 4577899999999876532 25789999999999875432211 112222 455566666666665553
No 221
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.66 E-value=0.00023 Score=42.68 Aligned_cols=24 Identities=33% Similarity=0.819 Sum_probs=20.1
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEECC
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHNT 117 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~~ 117 (169)
|+.+.|.|.+.|. |.|.+.|++++
T Consensus 1 G~~v~l~C~~~g~--P~p~v~W~k~~ 24 (81)
T cd05765 1 GETASFHCDVTGR--PPPEITWEKQV 24 (81)
T ss_pred CCcEEEEeecccc--CCCcEEEEecC
Confidence 6789999999996 45699999873
No 222
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.66 E-value=0.00078 Score=40.58 Aligned_cols=27 Identities=33% Similarity=0.657 Sum_probs=22.6
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeec
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQL 122 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 122 (169)
+.|.|.+.|. .|.+.++|+++|.++..
T Consensus 2 ~~L~C~v~g~-~P~~~v~W~~~g~~l~~ 28 (82)
T cd05759 2 YNLTCRARGA-KPAAEIIWFRDGEVLDG 28 (82)
T ss_pred EEEEEEEeCc-cCCCEEEEEECCEEccC
Confidence 6899999986 46679999999998764
No 223
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.64 E-value=0.00025 Score=39.59 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.4
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.|.|.++...|+|.|.|.+.+.
T Consensus 40 ~L~i~~~~~~d~G~Y~C~~~n~ 61 (63)
T smart00408 40 TLTIKSVSLEDSGEYTCVAENS 61 (63)
T ss_pred EEEEeeCCcccCEEEEEEEecC
Confidence 8999999999999999999774
No 224
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.64 E-value=0.0008 Score=46.77 Aligned_cols=73 Identities=16% Similarity=0.259 Sum_probs=45.1
Q ss_pred CcEEEEEEcCceeEEEEcce--eecC--CCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC--C-CceEEEEEEEe
Q psy1826 3 LAQISWVRHRDIHLLTVSGY--TYTS--DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT--P-PIGISMYLSVV 75 (169)
Q Consensus 3 ~~~V~W~k~~~~~~~~~~~~--~~~~--~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~--~-~~~~~~~l~v~ 75 (169)
..+|.|+|... ....+..+ .+.. ..|+.... .......|.|.+|..+|+|.|.|.+... + ..+..+.|.|.
T Consensus 45 ~~qVtWkK~~~-~IatY~~~g~~i~~~Fk~Rve~mS-~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt 122 (189)
T PHA02987 45 SILITWKKNNK-TIAGYGPCGPVIVDKFKNKIEYLS-KSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVT 122 (189)
T ss_pred cceEEEEEcCC-CEEEEecCCcEEChhhcCeEEEec-cCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEE
Confidence 45799999753 22222221 1111 13665211 1123458999999999999999998876 4 55666677776
Q ss_pred cc
Q psy1826 76 EP 77 (169)
Q Consensus 76 ~~ 77 (169)
..
T Consensus 123 ~~ 124 (189)
T PHA02987 123 TD 124 (189)
T ss_pred ch
Confidence 54
No 225
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=97.64 E-value=0.00032 Score=42.25 Aligned_cols=26 Identities=19% Similarity=0.554 Sum_probs=21.3
Q ss_pred EEEEeecCCCCCCeeEEEECCEEeeccc
Q psy1826 97 LTCVIKHSPEPPPAIYWLHNTEVSQLNL 124 (169)
Q Consensus 97 l~C~~~~~p~p~~~i~W~~~~~~~~~~~ 124 (169)
+.|.+.|.| .|.++|++||.++..+.
T Consensus 3 i~~~v~G~P--~Pti~W~kng~~l~~~~ 28 (79)
T cd05855 3 IPFTVKGNP--KPTLQWFHEGAILNESE 28 (79)
T ss_pred EEEEEeEeC--CCceEEEECCEECCCCc
Confidence 678999974 56999999999997543
No 226
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.62 E-value=0.00032 Score=41.66 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=22.1
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
+.|.|.+.+. .|++.+.|+++|.++...
T Consensus 1 ~~L~C~a~~~-~p~~~~~W~~~g~~i~~~ 28 (76)
T cd05895 1 LVLRCETVSE-YPSLRFKWFKNGKEIGAK 28 (76)
T ss_pred CEEEEecccC-CCCCceEEEECCcccccC
Confidence 3689998764 367799999999988654
No 227
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.62 E-value=0.00039 Score=43.35 Aligned_cols=32 Identities=22% Similarity=0.529 Sum_probs=26.2
Q ss_pred CCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECC
Q psy1826 84 GPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNT 117 (169)
Q Consensus 84 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~ 117 (169)
..++.+.+|+++.|.|.+.+.| .+.+.|++.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p--~~~v~W~~~~ 35 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQND--NTSLQWSNPA 35 (95)
T ss_pred cceEEEecCCcEEEEEEEecCC--ceEEEEeCCC
Confidence 3567899999999999999864 5699998643
No 228
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.61 E-value=0.00057 Score=41.20 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.|.|.....+|.|.|.|.+.+.
T Consensus 47 ~L~i~~~~~~~~~~y~C~a~n~ 68 (82)
T cd05759 47 TLPITPSDHDTGRTFTCRARNE 68 (82)
T ss_pred EEEEeCceecCCCEEEEEEcCc
Confidence 6778888888899999999886
No 229
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.60 E-value=0.0011 Score=40.18 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=37.7
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeec-eeeEEEee
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKL-EATYILAG 161 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 161 (169)
+.|.|.+.+. .|++.|+|+++|.++..... .... ...+..+.+.+.+.+...+.+ +..|.+..
T Consensus 2 ~~LtC~a~g~-~P~~~ItW~k~g~~l~~~~~-~~~~--~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v 65 (83)
T cd07705 2 AKLRCTSSGS-KPAANIKWRKGDQELEGAPT-SVLE--DGNGKTFTVSSSVEFQVTREDDGAEITCSV 65 (83)
T ss_pred EEEEEEecCc-cCCCEeEEEECCEECCCcce-eEEE--CCCCCEEEEEEEEEEEecchhCCCEEEEEE
Confidence 6899999987 46789999999998765432 1111 111234444566665555443 34444443
No 230
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=97.60 E-value=0.00046 Score=42.44 Aligned_cols=23 Identities=35% Similarity=0.813 Sum_probs=19.5
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEEC
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
|+.+.|.|.+.|.| .|.+.|+++
T Consensus 1 G~~v~L~C~~~g~P--~P~i~W~k~ 23 (90)
T cd05858 1 GSTVEFVCKVYSDA--QPHIQWLKH 23 (90)
T ss_pred CCeEEEEEEEecCC--CCEEEEEEe
Confidence 67899999999964 569999984
No 231
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=97.59 E-value=0.00042 Score=42.09 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=42.1
Q ss_pred cCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEeee
Q psy1826 83 GGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAGT 162 (169)
Q Consensus 83 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
.+....+.+|+.+.|.|.+.+. .|.+.+.|++++..+.... . ...+.+. +.....+|.+.|.+...
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~-~~~~~i~W~~~~~~~~~~~--~-----~~~~~L~------I~~v~~~DsG~Y~C~a~ 72 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSK-SPAYTLVWTRVGGGLPSRA--M-----DFNGILT------IRNVQLSDAGTYVCTGS 72 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCC-CCCcEEEEEECCCcCCCcc--c-----ccCCEEE------ECCCCHHHCEEEEEEEe
Confidence 3456788999999999999764 2567999999886543211 0 0011111 34456667777777753
No 232
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.57 E-value=0.00044 Score=43.24 Aligned_cols=69 Identities=17% Similarity=0.122 Sum_probs=41.6
Q ss_pred cEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEeee
Q psy1826 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAGT 162 (169)
Q Consensus 86 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
...+.+|+.+.|.|..... .|++.+.|++++.+.......+.... ...+.+. +..++++|.+.|.+...
T Consensus 12 ~~~v~eG~~~~L~C~pP~g-~P~p~~~W~k~~~~~~~~~d~r~~~~-~~~G~L~------fs~v~~~D~g~Y~C~A~ 80 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPH-YPDLSYRWLLNEFPNFIPEDGRRFVS-QTNGNLY------IAKVEASDRGNYSCFVS 80 (96)
T ss_pred ceeeeeCCcEEEeeCCCCC-CCCCEEEEEECCcccccccCCCeEEe-CCCCcEE------EeecCHhhCceeEEEEE
Confidence 4678899999999977654 46789999999876532211111111 1133444 44455556555655544
No 233
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.54 E-value=0.00065 Score=40.97 Aligned_cols=51 Identities=24% Similarity=0.400 Sum_probs=32.9
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.+|.|+|++. .+.. ....-..+.++.. .+ .|.|.....+|.+.|.|.|.|.
T Consensus 15 a~i~W~k~~~-~l~~-~~~~~~~~~~~t~---~s----~L~~~~~~~Ddg~~~~C~A~n~ 65 (80)
T cd05885 15 ATLRWYRDRK-ELKG-VISQQENGKTVSV---SN----TIRFPVDRKDDGAILSCEASHP 65 (80)
T ss_pred CeEEEEECCE-ECCC-CcccccCCceEEE---EE----EEEEEeeeccCCcEEEEEEECh
Confidence 4799999874 2221 1111112223331 12 7999999999999999999997
No 234
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.53 E-value=0.0014 Score=42.14 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=40.4
Q ss_pred cEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeec
Q psy1826 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKL 153 (169)
Q Consensus 86 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (169)
......|+.+.|.|.+.++-.+...++|++||..+........ ...+ +.++...+.|.+..++.|
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~-p~~d--~~ty~~~S~L~~~~~~~d 79 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNIT-PEGD--SVSYNVTSTVQVKLTEDD 79 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccccee-eCCC--CCcEEEEEEEEEECcccc
Confidence 3445578889999999997323579999999999864322111 1111 124445566666666655
No 235
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.53 E-value=0.00042 Score=43.94 Aligned_cols=34 Identities=32% Similarity=0.589 Sum_probs=26.4
Q ss_pred CCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEc
Q psy1826 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62 (169)
Q Consensus 27 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 62 (169)
..|+.+.. . ...+.|.|.+++.+|+|.|.|.+..
T Consensus 57 ~~rf~~~~-~-~~~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 57 SKRFSGSR-S-SNSFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred CceEEEEe-c-CCEEEEEECCCCHHHCEEEEEEEcc
Confidence 45676433 2 3677899999999999999998764
No 236
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.53 E-value=0.00035 Score=43.22 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=41.5
Q ss_pred cCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEee-eceeeEEEee
Q psy1826 90 NKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTW-KLEATYILAG 161 (169)
Q Consensus 90 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 161 (169)
..|+.+.|.|.+.+...+.+.++|+++|.++..... ...........+...+.|.+.... .+.+.|.+..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~--~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v 81 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT--TTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVV 81 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee--ccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEE
Confidence 468899999999997313579999999998876542 111112222344445555555542 1344444443
No 237
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=97.52 E-value=0.00024 Score=41.73 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeec
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQL 122 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 122 (169)
+.|.|.+.|. |.|.+.|++++.++..
T Consensus 1 ~~L~C~~~G~--P~P~v~W~k~~~~~~~ 26 (71)
T cd05876 1 LVLECIAEGL--PTPEVHWDRIDGPLSP 26 (71)
T ss_pred CEEEEEeeEe--cCCeEEEEECCcCCCC
Confidence 3689999996 5679999999887654
No 238
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.51 E-value=0.00013 Score=45.55 Aligned_cols=47 Identities=23% Similarity=0.377 Sum_probs=34.3
Q ss_pred cEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCe-EEEEEEEcC
Q psy1826 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSG-IYECQVSTT 63 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~~~~~ 63 (169)
-.|.|++.+.. .+ ..+.|+.. ..++ .|.|.+|+..|+| .|.|.|.+.
T Consensus 34 P~i~W~~~~~~-~i-------~~~~Ri~~-~~~G----nL~fs~v~~~D~g~~Y~C~a~~~ 81 (95)
T cd05845 34 LRIYWMNSDLL-HI-------TQDERVSM-GQNG----NLYFANVEEQDSHPDYICHAHFP 81 (95)
T ss_pred CEEEEECCCCc-cc-------cccccEEE-CCCc----eEEEEEEehhhCCCCeEEEEEcc
Confidence 36899965431 11 23467763 3446 9999999999999 899999886
No 239
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.50 E-value=0.00069 Score=41.36 Aligned_cols=47 Identities=21% Similarity=0.329 Sum_probs=32.5
Q ss_pred CcEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcCC
Q psy1826 3 LAQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64 (169)
Q Consensus 3 ~~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 64 (169)
...|.|++++.. + ..+.|+.. ... .|.|..++.+|+|.|.|.+.-.+
T Consensus 24 ~A~v~W~~ng~~--l-------~~~~r~~~-~~~-----GLlI~~~~~~dsG~Y~C~s~E~g 70 (85)
T cd05872 24 LASPVWLFNGTP--L-------NAQFSYRV-GTD-----GLLILVTSPEHSGTYRCYSEEEG 70 (85)
T ss_pred CccEEEEECCcc--c-------CCCcceEE-eCC-----CCEEEECCHhhCEEEEEEEecCC
Confidence 357899988752 1 12345542 222 68899999999999999976443
No 240
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.49 E-value=0.00071 Score=43.88 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=27.8
Q ss_pred CCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEc
Q psy1826 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62 (169)
Q Consensus 27 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 62 (169)
..|+..........+.|.|.+++.+|+|.|.|.+..
T Consensus 62 ~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 62 KGRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred CCcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 368876544433556899999999999999998754
No 241
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.49 E-value=0.001 Score=41.28 Aligned_cols=66 Identities=14% Similarity=0.047 Sum_probs=39.1
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEECCEEeecccc-cceeecceeeEEEEEEEEeeEEEEeeeceeeEEEe
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLM-QRESESSSFVKRLVVLLSVSIVELTWKLEATYILA 160 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (169)
++.+.|.|.+.|+..++..++|.++|........ ...... ...++...+.|.+..+.++..+|++.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~---~d~ty~~~s~l~v~~~~~~~ytC~V~ 80 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPN---GDGTYQLWVTLEVPPEDKARYSCRVE 80 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEEC---CCCeEEEEEEEEECCCCCCEEEEEEE
Confidence 6789999999997323459999999964322211 111111 12244445666666666566666654
No 242
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.47 E-value=0.001 Score=39.16 Aligned_cols=29 Identities=28% Similarity=0.646 Sum_probs=22.9
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEE-CCEEeec
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLH-NTEVSQL 122 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~-~~~~~~~ 122 (169)
|+.+.|.|.+.|. |.|.+.|++ ++..+..
T Consensus 1 G~~~~l~C~~~g~--P~p~v~W~~~~~~~~~~ 30 (74)
T cd05764 1 GQRATLRCKARGD--PEPAIHWISPDGKLISN 30 (74)
T ss_pred CCeEEEEEEccCc--CCCEEEEEeCCCEEecC
Confidence 6789999999986 567999997 6666543
No 243
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=97.44 E-value=0.00036 Score=42.24 Aligned_cols=20 Identities=10% Similarity=0.388 Sum_probs=17.3
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.|.|.++ .|+|.|.|.|.|.
T Consensus 50 ~L~i~~~--~d~g~Y~C~A~N~ 69 (81)
T cd05749 50 VLNVPGL--NETSKFSCEAHNA 69 (81)
T ss_pred EEEEccc--cCCeEEEEEEEec
Confidence 7888877 4789999999998
No 244
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=97.44 E-value=0.00064 Score=40.30 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=22.0
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
+.|.|.+.|. |+|.+.|++++..+..+
T Consensus 1 ~~L~C~v~g~--P~p~v~W~k~~~~l~~~ 27 (76)
T cd05736 1 ASLRCHAEGI--PLPRLTWLKNGMDITPK 27 (76)
T ss_pred CEeEeEeeec--CCCEEEEEECCEECCCC
Confidence 3689999996 56799999999987644
No 245
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=97.43 E-value=0.00037 Score=40.55 Aligned_cols=25 Identities=16% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEee
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQ 121 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~ 121 (169)
+.|.|.+.|. |+|.+.|++++..+.
T Consensus 1 v~l~C~~~g~--P~p~v~W~k~~~~~~ 25 (69)
T cd05725 1 VEFQCEVGGD--PVPTVLWRKEDGELP 25 (69)
T ss_pred CEEEEECccC--CCCEEEEEECCccCC
Confidence 4689999996 567999999977654
No 246
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.42 E-value=0.00036 Score=42.71 Aligned_cols=58 Identities=24% Similarity=0.286 Sum_probs=34.4
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeec
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKL 153 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (169)
|+.+.+.|.+.+. .|+|.|+|+.++..+......... ....++..+.+.+.+...+.|
T Consensus 14 ~~~~~~~C~s~~~-~P~~~i~W~~~~~~~~~~~~~~~~---~~~~~~~~~~S~l~~~~~~~~ 71 (89)
T PF08205_consen 14 GEEVTLTCSSSGG-YPPPQITWYLDGGPVVASNTTQSS---SPDNGLFTVSSTLTLTPTRED 71 (89)
T ss_dssp TEEEEEEEEEEEE-BS-EEEEEEETTCEECEEEEEEEE---ETTTTTEEEEEEEEEETTGGG
T ss_pred ceEEEEEEEeCCe-ECCeEEEEEECCCceeeeeeeeee---ccCCCcceEEEEEEEEcChHH
Confidence 7789999988765 578899999998877211111111 111123334456677776544
No 247
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.41 E-value=0.00085 Score=42.47 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=26.9
Q ss_pred EEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeec
Q psy1826 88 YINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQL 122 (169)
Q Consensus 88 ~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 122 (169)
.+..++.+.|.|.+.|+..+...++|.+||.++..
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~ 46 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSK 46 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCc
Confidence 34457889999999996334568899999998754
No 248
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.41 E-value=0.0012 Score=41.45 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=31.8
Q ss_pred CCeEEEecC--CCCeEEEEEcCCCCCC-CeEEEEEEEcC-CCceEEEEE
Q psy1826 28 QRFSCIHKP--QNEDWTLQIKYPQKRD-SGIYECQVSTT-PPIGISMYL 72 (169)
Q Consensus 28 ~r~~~~~~~--~~~~~~L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~l 72 (169)
.||.+.... ......|.|.++...| .|.|.|.|.|. +.....++|
T Consensus 49 ~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 49 ERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred CCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEe
Confidence 577654321 1134479999998767 79999999998 777666655
No 249
>KOG3515|consensus
Probab=97.37 E-value=0.0015 Score=54.50 Aligned_cols=125 Identities=17% Similarity=0.194 Sum_probs=80.3
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC--CCceEEEEEEEeccceeeecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT--PPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~ 119 (169)
.|...+...+.-+.|.|.+.|. ........+.+..+|..+..........+..+.+.|.+.....|.+.+.|..++..
T Consensus 60 ~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~ 139 (741)
T KOG3515|consen 60 TLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRA 139 (741)
T ss_pred ceeeecchhhhhhhhhhhhcccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEE
Confidence 5667777777778999999887 23333455556667665544455667788889999977665578889999998877
Q ss_pred eecccccceeecceeeEEEEEEEEeeEEEEeeec-eeeEEEeeeeecc
Q psy1826 120 SQLNLMQRESESSSFVKRLVVLLSVSIVELTWKL-EATYILAGTYTNS 166 (169)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 166 (169)
.................+.....+.+..+..+++ ...++++..+.|+
T Consensus 140 e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s 187 (741)
T KOG3515|consen 140 ELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNS 187 (741)
T ss_pred eecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccC
Confidence 6555432222221222222233455566666555 7777777777554
No 250
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=97.37 E-value=0.00082 Score=41.29 Aligned_cols=27 Identities=30% Similarity=0.747 Sum_probs=22.0
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEECCEEe
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEVS 120 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~ 120 (169)
|+.+.|.|.+.+.| .|.+.|++++..+
T Consensus 1 G~~v~L~C~~~g~P--~p~v~W~k~g~~~ 27 (90)
T cd05726 1 GRTVTFQCEATGNP--QPAIFWQKEGSQN 27 (90)
T ss_pred CCEEEEEEECCccC--CCEEEEEeCCCcc
Confidence 67899999999864 5699999987643
No 251
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.37 E-value=0.0017 Score=40.41 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=27.0
Q ss_pred cCCCcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 90 NKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 90 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
.+|+.+.|.|.+.|+-.+...++|++||.++..+
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~ 45 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEG 45 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCC
Confidence 3678899999999963244599999999987654
No 252
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.37 E-value=0.0019 Score=40.40 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=39.7
Q ss_pred EcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEe-eeceeeEEE
Q psy1826 89 INKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELT-WKLEATYIL 159 (169)
Q Consensus 89 v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 159 (169)
+..+..+.|.|.+.+.-.+...++|.+||.++..+......... +..+...+.|.+..+ .++..+|++
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~---~dty~~~S~L~vt~~~~~~~ysC~V 81 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKD---NDVYSTTSWLTVTKDSLGKKFRCIY 81 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecC---CCEEEEEEEEEECchhCCCeEEEEE
Confidence 33456789999999963256799999999987554221211111 124444555555554 334445544
No 253
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.31 E-value=0.0032 Score=39.19 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=25.4
Q ss_pred CCCcEEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 91 KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 91 ~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
.+....|.|.+.|+-.+...++|.+||.++..+
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~ 46 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDG 46 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCc
Confidence 355679999999963246799999999987543
No 254
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.30 E-value=0.0019 Score=35.88 Aligned_cols=29 Identities=31% Similarity=0.684 Sum_probs=23.9
Q ss_pred CCCcEEEEEEeecCCCCCCeeEEEECCEEee
Q psy1826 91 KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQ 121 (169)
Q Consensus 91 ~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~ 121 (169)
+|+.+.|.|.+.+. |++.+.|++++..+.
T Consensus 1 ~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~ 29 (63)
T smart00408 1 EGQSVTLTCPAEGD--PVPNITWLKDGKPLP 29 (63)
T ss_pred CCceEEEEeeCccC--CCCeEEEEECCEECC
Confidence 47889999997764 567999999988776
No 255
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=97.30 E-value=0.0007 Score=39.37 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeec
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQL 122 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 122 (169)
+.|.|.+.|. |.|.+.|++++.++..
T Consensus 1 v~l~C~~~g~--P~p~v~W~k~~~~~~~ 26 (71)
T cd05731 1 LLLECIAEGL--PTPEISWIKIGGELPA 26 (71)
T ss_pred CEEEEEeeEe--cCCeEEEEECCeECCC
Confidence 3689999996 4569999999887643
No 256
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.29 E-value=0.00086 Score=42.25 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=27.3
Q ss_pred EEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeec
Q psy1826 88 YINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQL 122 (169)
Q Consensus 88 ~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 122 (169)
...+++.+.|.|.+.+.-.+...++|++||.++..
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~ 47 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSS 47 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcc
Confidence 34467789999999996323679999999998853
No 257
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=97.29 E-value=0.00095 Score=40.41 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=24.0
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEECCEEe
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEVS 120 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~ 120 (169)
|+.+.|.|.+.+.|.|+|.+.|.+++..+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~ 29 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKR 29 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCccc
Confidence 67899999999975577899999877654
No 258
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.27 E-value=0.0063 Score=48.12 Aligned_cols=93 Identities=13% Similarity=0.146 Sum_probs=64.1
Q ss_pred CCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC----CCceEEEEEEEeccceeeecCCcEEEcCCCcEEEEEEeec
Q psy1826 28 QRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT----PPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKH 103 (169)
Q Consensus 28 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~----~~~~~~~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~~ 103 (169)
.+|.+-...+.+.+.|.|.++...++|.|+=++.+. ......+.+.+..+|.+.+ ....+.+|++..-.|.+..
T Consensus 276 ~~yi~p~~a~p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV--~p~PVL~Ge~YkAtC~vA~ 353 (566)
T PHA03269 276 EKYIIPDRKTTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITV--IGDPVLLGNPYAAYCKVNK 353 (566)
T ss_pred ceEEeccCCCCCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccc--cCCccccCCCceEEEEeee
Confidence 344433333456678999999999999998665443 2234556666666664333 2345678999999999976
Q ss_pred C-CCCCCeeEEEECCEEeec
Q psy1826 104 S-PEPPPAIYWLHNTEVSQL 122 (169)
Q Consensus 104 ~-p~p~~~i~W~~~~~~~~~ 122 (169)
+ |.-...+.|++|+.++..
T Consensus 354 YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 354 YYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred ecCCCceEEEEEeCCcccCc
Confidence 4 333459999999998875
No 259
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.23 E-value=0.0015 Score=40.77 Aligned_cols=70 Identities=11% Similarity=0.145 Sum_probs=44.2
Q ss_pred EEEcCCCcEEEEEEe-ecC--CCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEeeee
Q psy1826 87 MYINKGSTMNLTCVI-KHS--PEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAGTY 163 (169)
Q Consensus 87 ~~v~~g~~~~l~C~~-~~~--p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (169)
+.+..|....|.|.- .+. +.+.|.++|++|+.++..+......... .+.+ ++..++.+|.+.|.+...|
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~--~~~L------~I~~v~~~D~G~YtC~~~~ 76 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKG--STYL------HIIDVSLNDSGYYTCKLQF 76 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCC--CCEE------EEEEcChhhCEEEEEEEEE
Confidence 346678889999973 333 3466799999999988754322111000 1122 3666777787778877777
Q ss_pred e
Q psy1826 164 T 164 (169)
Q Consensus 164 ~ 164 (169)
.
T Consensus 77 ~ 77 (95)
T cd05897 77 T 77 (95)
T ss_pred e
Confidence 5
No 260
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.23 E-value=0.00062 Score=38.78 Aligned_cols=62 Identities=26% Similarity=0.391 Sum_probs=35.6
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEE-EEEEEEeeEEEEeeeceeeEEEe
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKR-LVVLLSVSIVELTWKLEATYILA 160 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 160 (169)
|+.+.|.|.+... .|++.+.|.+++.................... +. +.....+|.+.|.+.
T Consensus 1 G~~v~L~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~------i~~v~~~d~G~Y~C~ 63 (64)
T PF00047_consen 1 GSSVTLTCSVSSG-PPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLT------ISNVTPEDSGTYTCV 63 (64)
T ss_dssp TSEEEEEEEEEES-SSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEE------ESSCTGGGTEEEEEE
T ss_pred CCeEEEEeecCCC-CCCcEEEEEECCccccCcceeEeecccceeeeEEE------EccCCHHHCEEEEEE
Confidence 6789999999333 36789999998765544332222111111111 22 445556667777664
No 261
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.21 E-value=0.0019 Score=41.74 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=37.0
Q ss_pred EEcCCCcEEEEEEeecCCCCC-CeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEee
Q psy1826 88 YINKGSTMNLTCVIKHSPEPP-PAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTW 151 (169)
Q Consensus 88 ~v~~g~~~~l~C~~~~~p~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (169)
.+.+++.+.|.|.+.++ .|. ..++|++|+.++..+.......... ...++...+.|.+...+
T Consensus 14 e~~~~~~~tL~Cla~gF-yP~~I~V~W~kng~~l~~g~~~~~~~~~~-~~gTYs~~S~L~v~~~~ 76 (115)
T cd05769 14 EIRNKRKATLVCLATGF-YPDHVSLSWKVNGKEVTDGVATDPQALRE-NTSTYSISSRLRVSATE 76 (115)
T ss_pred HhccCCCcEEEEEEEeE-eCCCcEEEEEECCEECCCCcccccceecC-CCCeEEEEEEEEEChHH
Confidence 34456789999999997 344 6999999999876442211011111 11345455666666643
No 262
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.19 E-value=0.003 Score=37.47 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEee
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQ 121 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~ 121 (169)
+.|.|.+.+.-.+...++|++||.++.
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~ 28 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVT 28 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECC
Confidence 689999999622346999999998744
No 263
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.19 E-value=0.0032 Score=39.15 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=25.7
Q ss_pred cCCCcEEEEEEeecCCCCCCeeEEEECCEEee
Q psy1826 90 NKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQ 121 (169)
Q Consensus 90 ~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~ 121 (169)
..|....|.|.+.|+-.+...++|.+||.++.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~ 44 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP 44 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence 34666789999999633567999999999876
No 264
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.19 E-value=0.0029 Score=39.42 Aligned_cols=31 Identities=19% Similarity=0.457 Sum_probs=25.0
Q ss_pred EEEcCCCcEEEEEEeecCCCCCCeeEEEECCEE
Q psy1826 87 MYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119 (169)
Q Consensus 87 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~ 119 (169)
+.+.+|+++.|.|.+.+. |.+.+.|++++..
T Consensus 2 v~~~~G~~VtL~C~~s~~--~~~~i~W~~~~~k 32 (94)
T cd07690 2 VLGKKGDTAELPCTASQK--KSIQFHWKNSNQI 32 (94)
T ss_pred eEeeCCCCEEEEEEeCCC--CCcEEEEEECCcE
Confidence 457789999999999885 5679999977643
No 265
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.16 E-value=0.0023 Score=39.09 Aligned_cols=68 Identities=18% Similarity=0.273 Sum_probs=44.9
Q ss_pred CcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEeeeee
Q psy1826 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAGTYT 164 (169)
Q Consensus 85 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (169)
....+.+|..+.|.|...+. ...+.|+.++.++..+...... ...+ ++.....+|.+.|.+... .
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~---~A~v~W~~ng~~l~~~~r~~~~-----~~GL------lI~~~~~~dsG~Y~C~s~-E 68 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN---LASPVWLFNGTPLNAQFSYRVG-----TDGL------LILVTSPEHSGTYRCYSE-E 68 (85)
T ss_pred eEEEEecCCCEEEECCCCCC---CccEEEEECCcccCCCcceEEe-----CCCC------EEEECCHhhCEEEEEEEe-c
Confidence 35678899999999998874 4599999999988654221111 1112 244556677788887643 4
Q ss_pred ccc
Q psy1826 165 NSF 167 (169)
Q Consensus 165 ~~~ 167 (169)
++|
T Consensus 69 ~gf 71 (85)
T cd05872 69 EGF 71 (85)
T ss_pred CCC
Confidence 444
No 266
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.15 E-value=0.0037 Score=38.90 Aligned_cols=32 Identities=25% Similarity=0.486 Sum_probs=24.9
Q ss_pred CCCcEEEEEEeecCCCCCCeeEEEECCEEeec
Q psy1826 91 KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQL 122 (169)
Q Consensus 91 ~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~ 122 (169)
..+.+.|.|.+.+.-.+...++|.+||..+..
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~ 44 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATL 44 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcC
Confidence 45668999999996324579999999998643
No 267
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.11 E-value=0.006 Score=35.92 Aligned_cols=33 Identities=27% Similarity=0.722 Sum_probs=28.3
Q ss_pred EEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEee
Q psy1826 87 MYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQ 121 (169)
Q Consensus 87 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~ 121 (169)
..+.+|+.+.|.|.+.+. |.+.+.|++++..+.
T Consensus 9 ~~v~~g~~~~l~C~~~~~--p~~~~~w~~~~~~~~ 41 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGN--PPPQVQWYKNGSPIN 41 (80)
T ss_dssp SEEETTSEEEEEEEEESS--SSSEEEEEETTEEEE
T ss_pred eEEeCCCcEEEEEEEEcc--cceeeeeeeeeeeee
Confidence 567899999999999985 457999999988777
No 268
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.11 E-value=0.016 Score=33.97 Aligned_cols=34 Identities=24% Similarity=0.725 Sum_probs=28.2
Q ss_pred cEEEcCCCcEEEEEEeecCCCCCCeeEEEEC-CEEee
Q psy1826 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN-TEVSQ 121 (169)
Q Consensus 86 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~-~~~~~ 121 (169)
...+..|+.+.|.|.+.+. +.+.+.|+++ +..+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~~~~v~ 37 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGS--PPPEVTWYKQGGKLLA 37 (86)
T ss_pred cEEEeCCCeEEEEEEEccC--CCCeEEEEECCCEEcC
Confidence 4567789999999999886 5679999998 77665
No 269
>smart00409 IG Immunoglobulin.
Probab=97.11 E-value=0.016 Score=33.97 Aligned_cols=34 Identities=24% Similarity=0.725 Sum_probs=28.2
Q ss_pred cEEEcCCCcEEEEEEeecCCCCCCeeEEEEC-CEEee
Q psy1826 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN-TEVSQ 121 (169)
Q Consensus 86 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~-~~~~~ 121 (169)
...+..|+.+.|.|.+.+. +.+.+.|+++ +..+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~~~~v~ 37 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGS--PPPEVTWYKQGGKLLA 37 (86)
T ss_pred cEEEeCCCeEEEEEEEccC--CCCeEEEEECCCEEcC
Confidence 4567789999999999886 5679999998 77665
No 270
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.10 E-value=0.0013 Score=38.89 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=19.0
Q ss_pred EEEcCCCCCCCeEEEEEEEcC
Q psy1826 43 LQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 43 L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
+.|..+..+|+|.|.|.+.+.
T Consensus 47 ~~~~~~~~~~~g~y~C~~~~~ 67 (80)
T PF13895_consen 47 LFIPNVSPEDSGNYTCRASNG 67 (80)
T ss_dssp EEESSEEGGGTEEEEEEEEET
T ss_pred eeeeeeccccCEEEEEEEEeC
Confidence 777889999999999999885
No 271
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.06 E-value=0.005 Score=38.38 Aligned_cols=29 Identities=14% Similarity=0.357 Sum_probs=23.6
Q ss_pred CCCcEEEEEEeecCCCCCCeeEEEECCEE
Q psy1826 91 KGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119 (169)
Q Consensus 91 ~g~~~~l~C~~~~~p~p~~~i~W~~~~~~ 119 (169)
.++.+.|.|.+.++-.+...++|.+||.+
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 46678999999996324679999999998
No 272
>PHA02633 hypothetical protein; Provisional
Probab=97.00 E-value=0.0019 Score=36.51 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=26.6
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEe
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVV 75 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~ 75 (169)
.|.|-++..+|+|.|.|.+.+. .....++.++|.
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 7999999999999999999886 334445555554
No 273
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.99 E-value=0.015 Score=45.81 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=70.3
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcC-CC--ceEEEEEEEeccceeeecCCcEEEcCCCcEEEEEEeecC-CCCCCeeEEEEC
Q psy1826 41 WTLQIKYPQKRDSGIYECQVSTT-PP--IGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHS-PEPPPAIYWLHN 116 (169)
Q Consensus 41 ~~L~I~~v~~~D~G~Y~C~~~~~-~~--~~~~~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~ 116 (169)
+.|.|..+...++|.|+=...+. +. ...++.+....+|.+.+. ...+.+|++....|.+..+ |.-...+.|++|
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~--~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLS--VHPSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCccccc--CCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 56999999999999998554443 22 333444444556654333 3456789999999999764 333459999999
Q ss_pred CEEeecccccceeecceeeEEEEEEEEeeEEEEeeec
Q psy1826 117 TEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKL 153 (169)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (169)
+.++........... -....++..+|+|.++....+
T Consensus 276 g~~V~~~~~~~~~~~-~~~~gl~T~vStlt~~~~~~~ 311 (486)
T PHA03273 276 AKEVDFTKYVTNASS-VWVDGLITRISTLSIPVDPDE 311 (486)
T ss_pred CeeccccccceeeEE-EecCCceEEEEEEeccCcccC
Confidence 999884322121111 123335556777777776544
No 274
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=96.99 E-value=0.0058 Score=38.11 Aligned_cols=33 Identities=24% Similarity=0.588 Sum_probs=26.3
Q ss_pred CcEEEcCCCcEEEEEE-eecCCCCCCeeEEEECCEE
Q psy1826 85 PDMYINKGSTMNLTCV-IKHSPEPPPAIYWLHNTEV 119 (169)
Q Consensus 85 ~~~~v~~g~~~~l~C~-~~~~p~p~~~i~W~~~~~~ 119 (169)
..+.+.+|+.+.|.|. ..|. |.|.|.|+.++..
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~--P~P~i~W~~~~~~ 44 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSA--VPLRIYWMNSDLL 44 (95)
T ss_pred ceeEEecCCCEEEEecCCCCC--CCCEEEEECCCCc
Confidence 4578999999999997 4675 5679999976644
No 275
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=96.96 E-value=0.0052 Score=38.18 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=45.9
Q ss_pred eecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEe
Q psy1826 81 IIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILA 160 (169)
Q Consensus 81 ~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (169)
+...+...+.+|++++|.|..... ...+.|+|+|........... ........+. +-.++.+|.++|++.
T Consensus 4 l~a~p~~vV~~G~~VTL~C~~~~~---~~~f~l~k~g~~~~~~~~~~~-~~~~~~a~f~------I~~~~~~~~G~Y~C~ 73 (94)
T cd05711 4 LSAHPSPVVPSGENVTLQCHSDIR---FDRFILYKEGRSKPVLHLYEK-HHGGFQASFP------LGPVTPAHAGTYRCY 73 (94)
T ss_pred EEecCCCccCCCCeEEEEEecCCC---CCEEEEEECCCCCCceecccc-cCCeEEEEEE------ecCCCcccCEEEEEE
Confidence 334556778899999999977552 347899998865322110000 0011111222 455677789999999
Q ss_pred eeeecc
Q psy1826 161 GTYTNS 166 (169)
Q Consensus 161 ~~~~~~ 166 (169)
+.+.++
T Consensus 74 ~~~~~~ 79 (94)
T cd05711 74 GSYNHS 79 (94)
T ss_pred EECCCC
Confidence 876554
No 276
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=96.95 E-value=0.0084 Score=37.09 Aligned_cols=31 Identities=23% Similarity=0.537 Sum_probs=25.1
Q ss_pred CCcEEEcCCCcEEEEEEeecCCCCCCeeEEEEC
Q psy1826 84 GPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 84 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
...+.+.+|+++.|.|.+.+. |.+.+.|++.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~p 34 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNN--DNSSLQWSNP 34 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCC--CCceEEEeCC
Confidence 346788999999999999875 4569999863
No 277
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.94 E-value=0.0041 Score=37.57 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=41.1
Q ss_pred CCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEe
Q psy1826 91 KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILA 160 (169)
Q Consensus 91 ~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (169)
.++.+.|.|.+.++-.+...|.|+++|..+........... .....+...+.+.+.-..++..+|++.
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~--~~dgty~~~s~l~v~~~~~~~ysC~V~ 74 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPP--NSDGTYSVTSSLTVTWNSGDEYSCRVT 74 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEE--ETTSEEEEEEEEEEETTTTGGEEEEEE
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeeccccc--ccccceeeeEEEEecCCCCCEEEEEEE
Confidence 47889999999996323558999999998765432221110 122344455566666444445555553
No 278
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=96.92 E-value=0.0043 Score=38.34 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=37.4
Q ss_pred EEEcCCCcEEEEEEeecCCCCCCeeEEEECC--EEeecc--cccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEeee
Q psy1826 87 MYINKGSTMNLTCVIKHSPEPPPAIYWLHNT--EVSQLN--LMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAGT 162 (169)
Q Consensus 87 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
+.+.+|+.+.|.|.. +. |.|.+.|+++. ...... ...+.. .....+ .+-..+++|.++|.+...
T Consensus 6 ~~~~eG~~v~L~C~~-~~--p~p~v~Wykq~~g~~~~~~~~~~~r~~---~~~~~L------~I~~~~~~DsG~Y~C~a~ 73 (91)
T cd05871 6 VYGVENNSTFLECLP-KS--PQASVKWLFQRGGDQRKEEVKTEERLI---HTERGL------LLRSLQRSDAGVYTCTAV 73 (91)
T ss_pred EEEecCCcEEEEEEC-CC--CCceEEEEEECCCCCccccccccccEE---EecCeE------EEeeCChhHCEEEEEEEE
Confidence 567899999999985 43 56799999732 221111 011111 001112 245567888888888765
No 279
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=96.91 E-value=0.0085 Score=36.30 Aligned_cols=26 Identities=15% Similarity=0.450 Sum_probs=21.3
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEECCEE
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEV 119 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~~~~ 119 (169)
|+++.|.|.+.+. |.+.+.|...+..
T Consensus 1 Ge~~~l~C~~~~~--~~~~~~W~~~~~~ 26 (84)
T cd05861 1 GETITVNCIVQGN--EVVDFSWTYPGKD 26 (84)
T ss_pred CCcEEEEEEEECC--CccEEEEEECCcc
Confidence 6789999999996 4579999986653
No 280
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=96.89 E-value=0.0078 Score=37.88 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEe
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVV 75 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~ 75 (169)
.|.+..++.+|.|.|+|.+.|. ...+....|.|.
T Consensus 66 ~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 66 ELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN 100 (101)
T ss_pred EEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence 7999999999999999999997 556555666553
No 281
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=96.87 E-value=0.0036 Score=36.28 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=19.8
Q ss_pred EEEEcCCCCCCCeEEEEEEEc
Q psy1826 42 TLQIKYPQKRDSGIYECQVST 62 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~ 62 (169)
.|.|.++..+|.|.|.|.|.|
T Consensus 55 ~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 55 TLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEccCCHHhCcEEEEEEEC
Confidence 899999999999999999975
No 282
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.85 E-value=0.033 Score=43.44 Aligned_cols=93 Identities=15% Similarity=0.324 Sum_probs=58.1
Q ss_pred CeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC----CCceEEEEEEEe-ccceeeecCCcEEEcCCCcEEEEEEeec
Q psy1826 29 RFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT----PPIGISMYLSVV-EPITQIIGGPDMYINKGSTMNLTCVIKH 103 (169)
Q Consensus 29 r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~----~~~~~~~~l~v~-~~p~~~~~~~~~~v~~g~~~~l~C~~~~ 103 (169)
+|.+-..+...+..|.|.++...|+| |.-.+.+. ....+.+.+.+. -+|.+... ...+.+|++....|.+..
T Consensus 195 ky~i~~~ktt~~m~v~I~svD~~t~G-y~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~--a~PVL~Ge~YkAtC~vAn 271 (490)
T PHA03271 195 KYFIWINKTTNTMGVEIRNVDYADNG-YIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVL--APPVLSGENYKASCIVRH 271 (490)
T ss_pred eeEEeeccccceeeEEEEEeecccce-EEEEEecCCCCCccccceEEEEEEecCCCcccc--CCccccCCCceEEEEeee
Confidence 44433333345668999999999999 44333332 223344444443 34433322 235668999999999987
Q ss_pred C-CCCCCeeEEEECCEEeeccc
Q psy1826 104 S-PEPPPAIYWLHNTEVSQLNL 124 (169)
Q Consensus 104 ~-p~p~~~i~W~~~~~~~~~~~ 124 (169)
+ |.-...+.|++||.++....
T Consensus 272 YYPP~SvrlrWf~nG~~V~~~~ 293 (490)
T PHA03271 272 FYPPGSVYVSWRQNGNIATPRK 293 (490)
T ss_pred ecCCCceEEEEEeCCccccCcc
Confidence 4 32345899999999886544
No 283
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=96.85 E-value=0.0032 Score=38.81 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=32.2
Q ss_pred CcEEEEEEcCceeEEEE--cceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 3 LAQISWVRHRDIHLLTV--SGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 3 ~~~V~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
++.|+|+|++....... .......+..|.... .|.|......|.|.|.|.+.+.
T Consensus 29 ~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s-------~l~v~~~~~~~~~~y~C~v~h~ 84 (95)
T cd00098 29 DITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSS-------QLTVSPSDWNSGDTYTCVVTHE 84 (95)
T ss_pred CcEEEEEECCEECCCceeccccccCCCCCEEEEE-------EEEECHHHhCCCCCEEEEEEeC
Confidence 57899999874221111 111112233444211 5677777777999999999886
No 284
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.84 E-value=0.0044 Score=38.73 Aligned_cols=32 Identities=13% Similarity=0.325 Sum_probs=25.5
Q ss_pred EEEcCCCcEEEEEEeecC-CCCCCeeEEEECCE
Q psy1826 87 MYINKGSTMNLTCVIKHS-PEPPPAIYWLHNTE 118 (169)
Q Consensus 87 ~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~ 118 (169)
..+..++.+.|.|.+.+. -.+...++|.+|+.
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~ 41 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG 41 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence 345568899999999998 33567999999874
No 285
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=96.76 E-value=0.0033 Score=37.48 Aligned_cols=21 Identities=38% Similarity=0.945 Sum_probs=17.0
Q ss_pred EEEEEEeecCCCCCCeeEEEECC
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNT 117 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~ 117 (169)
+.|.|.+.|. |.|.+.|++++
T Consensus 1 v~l~C~~~G~--P~P~v~W~~~~ 21 (79)
T cd05734 1 VTLNCSAEGY--PPPTIVWKHSK 21 (79)
T ss_pred CEeEeeCeEe--CCCEEEEEECC
Confidence 4789999996 45699999864
No 286
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.74 E-value=0.031 Score=43.76 Aligned_cols=108 Identities=16% Similarity=0.121 Sum_probs=71.1
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-C--CceEEEEEEEeccceeeecCCcEEEcCCCcEEEEEEeecC-CCCCCeeEEEECC
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-P--PIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHS-PEPPPAIYWLHNT 117 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~--~~~~~~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~ 117 (169)
.|.|..+....+|.|+=...+. + ....++++....+|.+.+. ...+.+|++..-.|.+..+ |.-...+.|++|+
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~--~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng 260 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIR--PHAVLEGEPFGATCVAANYYPGDRAAFRWFEGG 260 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCccccc--CCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 5999999999999999887664 3 3334556666666654333 2356689999999999764 3234599999999
Q ss_pred EEeecccccceeecceeeEEEEEEEEeeEEEEeeec
Q psy1826 118 EVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKL 153 (169)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (169)
.++......... .....+-+...|++.++....+
T Consensus 261 ~~V~~~~~i~~~--~~~~~dGfs~vStvtsea~~~~ 294 (466)
T PHA03270 261 DEVFAPERVRTR--VDAQRDGFSATSTLTSEARAGL 294 (466)
T ss_pred ccccCcceeeee--eEecCCCeeEEEEEeccccccC
Confidence 988653322211 1222223446777777776544
No 287
>KOG3515|consensus
Probab=96.68 E-value=0.0027 Score=52.96 Aligned_cols=81 Identities=22% Similarity=0.482 Sum_probs=54.9
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC--CCceEEEEEEE--eccc--eeeecCCc-EEEcCCCcEEEEEEeecCCCCCCeeEEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT--PPIGISMYLSV--VEPI--TQIIGGPD-MYINKGSTMNLTCVIKHSPEPPPAIYWL 114 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~--~~~~~~~~l~v--~~~p--~~~~~~~~-~~v~~g~~~~l~C~~~~~p~p~~~i~W~ 114 (169)
.+.+...+.++.|.|+|.+.+. .....-..+.+ ..+. ..+..... ....+|+.+.|.|.+.+. .|.+.++|+
T Consensus 164 ~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg-~P~~~~~w~ 242 (741)
T KOG3515|consen 164 LLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGG-NPSQQQTWY 242 (741)
T ss_pred ceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcC-Ccchhhhhc
Confidence 5778888899999999999885 22222223333 2222 21222222 567899999999977665 578899999
Q ss_pred ECCEEeecc
Q psy1826 115 HNTEVSQLN 123 (169)
Q Consensus 115 ~~~~~~~~~ 123 (169)
+++.++...
T Consensus 243 ~~s~~~~~~ 251 (741)
T KOG3515|consen 243 KDSRPQSES 251 (741)
T ss_pred cccccchhh
Confidence 998887664
No 288
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=96.65 E-value=0.024 Score=32.71 Aligned_cols=35 Identities=34% Similarity=0.717 Sum_probs=22.9
Q ss_pred ceeeecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEE
Q psy1826 78 ITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWL 114 (169)
Q Consensus 78 p~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~ 114 (169)
|.+...+.......+. +.|.|.+.+.+ |.+.+.|+
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~-~~~~~~W~ 36 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGP-PPPSISWY 36 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEE-SSEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEcccc-CCeEEEEE
Confidence 3333334444343333 99999999974 47899998
No 289
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=96.64 E-value=0.0099 Score=36.58 Aligned_cols=67 Identities=9% Similarity=0.045 Sum_probs=41.4
Q ss_pred CCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEEEEEEeeEEEEeeeceeeEEEeeee
Q psy1826 84 GPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAGTY 163 (169)
Q Consensus 84 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (169)
.+...|.+|+++.|.|.... +...+.|+++|........ ........+. +-.++++|.+.|++.+..
T Consensus 8 ~p~~vV~~G~~VtL~C~~~~---~~~~f~l~k~g~~~~~~~~----~~~~~~~~f~------i~~v~~~~~G~Y~C~~~~ 74 (91)
T cd05751 8 EPSSVVPLGKPVTLRCQGPY---GAVEYRLYREGSTFAVKKP----PEPQNKAKFF------IPSMKREHAGRYRCYYRS 74 (91)
T ss_pred cCCCccCCCCcEEEEEecCC---CCCEEEEEECCCCcccccc----CCCceeEEEE------ccCCChhHCEEEEEEEEC
Confidence 34567889999999998753 4568999999875443211 0111111222 444566778888887643
No 290
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.64 E-value=0.012 Score=37.91 Aligned_cols=59 Identities=22% Similarity=0.306 Sum_probs=40.6
Q ss_pred cEEEEEEcCceeE--EEE----cceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEc
Q psy1826 4 AQISWVRHRDIHL--LTV----SGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62 (169)
Q Consensus 4 ~~V~W~k~~~~~~--~~~----~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 62 (169)
+.+.|+|+.++.. +.. +.+......|+.+..+...+...|.|.+++.+|.+.|.|....
T Consensus 31 ~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~e~ 95 (115)
T cd05721 31 FRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKIEL 95 (115)
T ss_pred EEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEeee
Confidence 7899999765421 111 1122224567776666666888999999999999999997643
No 291
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.37 E-value=0.019 Score=31.94 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 39 EDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 39 ~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
....|.|.+++..|.|.|.|.+.+.
T Consensus 41 ~~~~l~i~~~~~~d~g~y~C~~~~~ 65 (74)
T cd00096 41 GSSTLTISNVTLEDSGTYTCVASNS 65 (74)
T ss_pred eEEEEEECccCcccCcEEEEEEecC
Confidence 3347999999999999999999775
No 292
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.36 E-value=0.028 Score=35.77 Aligned_cols=31 Identities=16% Similarity=0.463 Sum_probs=25.4
Q ss_pred cCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEEC
Q psy1826 83 GGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 83 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
.+..+.+.+|+++.|.|...+ + .+.+.|++.
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~--~~~v~Wykq 34 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-G--HDNMYWYRQ 34 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-C--CCEEEEEEE
Confidence 355788999999999999877 2 469999985
No 293
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.34 E-value=0.024 Score=35.79 Aligned_cols=32 Identities=16% Similarity=0.458 Sum_probs=26.3
Q ss_pred cCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEEC
Q psy1826 83 GGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 83 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
.+..+.+.+|+++.|.|...+. +.+.+.|++.
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~--~~~~v~W~k~ 35 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTS--TFYYLFWYRQ 35 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCC--CccEEEEEEE
Confidence 3456789999999999999875 4569999974
No 294
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=96.29 E-value=0.017 Score=35.57 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 41 WTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 41 ~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
..+.|.+|..+|+|.|.|...+.
T Consensus 53 ~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 53 AKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred EEEEccCCChhHCEEEEEEEECC
Confidence 37899999999999999998774
No 295
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=96.28 E-value=0.074 Score=34.19 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=24.2
Q ss_pred cCCcEEEcCCCcEEEEEEeecCCC--CCCeeEEEE
Q psy1826 83 GGPDMYINKGSTMNLTCVIKHSPE--PPPAIYWLH 115 (169)
Q Consensus 83 ~~~~~~v~~g~~~~l~C~~~~~p~--p~~~i~W~~ 115 (169)
.+..+.+.+|+.+.|.|....... ....+.|++
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~ 38 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSF 38 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEE
Confidence 456678889999999998865321 124799975
No 296
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.23 E-value=0.068 Score=32.35 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=17.6
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.|.|..-..+|...|.|++.|.
T Consensus 45 ~L~~~p~~eDdG~~~~C~a~~~ 66 (82)
T cd05883 45 QLMLKVTKEDDGVPVICLVDHP 66 (82)
T ss_pred EEEEECchhhCCCEEEEEEcCc
Confidence 6777666666767999999986
No 297
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=96.22 E-value=0.066 Score=33.35 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=25.0
Q ss_pred CcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEE
Q psy1826 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119 (169)
Q Consensus 85 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~ 119 (169)
.++.+.+|+++.|.|.+.+.+ ...+.|++-+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~--~~~v~w~~~~~~ 37 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNND--DSVIQLLNPNRQ 37 (95)
T ss_pred CceEEcCCCcEEEEEEEccCC--ccEEEEEecCCc
Confidence 457899999999999998853 346778765533
No 298
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=96.19 E-value=0.079 Score=33.38 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=31.2
Q ss_pred CcEEEcCCCcEEEEEEeecCCCCCCe-eEEEECCEEeecccc
Q psy1826 85 PDMYINKGSTMNLTCVIKHSPEPPPA-IYWLHNTEVSQLNLM 125 (169)
Q Consensus 85 ~~~~v~~g~~~~l~C~~~~~p~p~~~-i~W~~~~~~~~~~~~ 125 (169)
..+.+.+|+.+.|.|.+.+.| +|. +.|.+++..+.....
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP--~p~~~~W~~~~~~l~~~~~ 50 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYP--KPEHQQWIYMNRTLTNTSD 50 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCC--CCeeeEEEcCCcccCcccc
Confidence 457899999999999999975 445 999999887654433
No 299
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.18 E-value=0.027 Score=35.40 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=24.8
Q ss_pred EEcCCCcEEEEEEeecCC-CCCCeeEEEECCEE
Q psy1826 88 YINKGSTMNLTCVIKHSP-EPPPAIYWLHNTEV 119 (169)
Q Consensus 88 ~v~~g~~~~l~C~~~~~p-~p~~~i~W~~~~~~ 119 (169)
.+..++.+.|.|.+.+.- ..+..++|.++|..
T Consensus 15 ~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 15 DLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred HhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 344678899999999963 23579999999876
No 300
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=96.17 E-value=0.069 Score=34.11 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=43.4
Q ss_pred CCCcEEEEEEeecCCCC--------CCeeEEEEC--CEEee-c-ccccceeecceeeEEEEEE--------EEeeEEEEe
Q psy1826 91 KGSTMNLTCVIKHSPEP--------PPAIYWLHN--TEVSQ-L-NLMQRESESSSFVKRLVVL--------LSVSIVELT 150 (169)
Q Consensus 91 ~g~~~~l~C~~~~~p~p--------~~~i~W~~~--~~~~~-~-~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 150 (169)
.|+.+.|.|.....+.+ ...+.|++. +.... . ...........+.+|+.+. .+-.+..++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 48899999998765322 368999984 22211 1 1111111122233344331 234566777
Q ss_pred eeceeeEEEeeeeecc
Q psy1826 151 WKLEATYILAGTYTNS 166 (169)
Q Consensus 151 ~~~~~~~~~~~~~~~~ 166 (169)
.+|+++|.+...+.+.
T Consensus 81 ~sD~G~Y~C~v~~~~~ 96 (110)
T cd05878 81 SSDSGVYRCEVMHGIE 96 (110)
T ss_pred hhhCEEEEEEEEeCCC
Confidence 8889999998887543
No 301
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=96.10 E-value=0.058 Score=32.41 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=16.6
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.|.+.....++.+.|.|.+.+.
T Consensus 46 ~l~~~~~~~d~g~~~~C~v~h~ 67 (82)
T cd05761 46 SLRFQVDREDDGAPIICRVDHP 67 (82)
T ss_pred EEEEEcchhhCCCEEEEEEeCh
Confidence 4566565666677999999886
No 302
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=96.00 E-value=0.16 Score=32.64 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=43.0
Q ss_pred cCCcEEEcCCCcEEEEEEeecCCC-C-CCeeEEEEC----CEE--e-ecccccceeecceeeEEEEEE-------EEeeE
Q psy1826 83 GGPDMYINKGSTMNLTCVIKHSPE-P-PPAIYWLHN----TEV--S-QLNLMQRESESSSFVKRLVVL-------LSVSI 146 (169)
Q Consensus 83 ~~~~~~v~~g~~~~l~C~~~~~p~-p-~~~i~W~~~----~~~--~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 146 (169)
.+..+.+.+|+++.|.|.....+. + ...|.|++. +.+ + .............+..|..+. .+..+
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 456688899999999998765321 1 246999741 221 1 111111111222333333221 23456
Q ss_pred EEEeeeceeeEEEeee
Q psy1826 147 VELTWKLEATYILAGT 162 (169)
Q Consensus 147 ~~~~~~~~~~~~~~~~ 162 (169)
-.++.+|.++|.+...
T Consensus 84 ~~v~~~D~G~Y~C~v~ 99 (115)
T cd05880 84 WQLQPTDNGTYTCQVK 99 (115)
T ss_pred eeCChhhCEEEEEEEE
Confidence 6667777788877543
No 303
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=95.94 E-value=0.066 Score=32.54 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=22.6
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEECCEE
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEV 119 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~~~~ 119 (169)
|+++.|.|.+.+.+.|...+.|...+..
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~ 28 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKK 28 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcc
Confidence 6789999999987666678999876653
No 304
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=95.93 E-value=0.075 Score=34.03 Aligned_cols=33 Identities=9% Similarity=0.272 Sum_probs=25.9
Q ss_pred CCcEEEcCCCcEEEEEEeecCCCCCCeeEEEEC
Q psy1826 84 GPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 84 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
+..+.+.+|+++.|.|.+.+...+.+.+.|++.
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq 37 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQ 37 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence 456788999999999998762224569999984
No 305
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.90 E-value=0.054 Score=33.88 Aligned_cols=32 Identities=25% Similarity=0.650 Sum_probs=25.5
Q ss_pred CcEEEcCCCcEEE-EEEeecCCCCCCeeEEEECC
Q psy1826 85 PDMYINKGSTMNL-TCVIKHSPEPPPAIYWLHNT 117 (169)
Q Consensus 85 ~~~~v~~g~~~~l-~C~~~~~p~p~~~i~W~~~~ 117 (169)
....+.+|+.+.+ .|.+.+. +|++.|+|+.+.
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~g-kPaa~IsW~~~~ 41 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEG-RPAADVTWETNV 41 (97)
T ss_pred CeeEeecCcceeEEEEEccCC-ccCCEeEEeCCC
Confidence 3466778888888 9988766 689999999763
No 306
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=95.77 E-value=0.1 Score=32.81 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=38.4
Q ss_pred CCCcEEEEEEeecCC----CCCCeeEEEECCE------EeecccccceeecceeeEEEEEE------EEeeEEEEeeece
Q psy1826 91 KGSTMNLTCVIKHSP----EPPPAIYWLHNTE------VSQLNLMQRESESSSFVKRLVVL------LSVSIVELTWKLE 154 (169)
Q Consensus 91 ~g~~~~l~C~~~~~p----~p~~~i~W~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 154 (169)
.|+++.|.|.....| .....|.|++... .+.............+.+|..+. .+-.+..++.+|.
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 488999999887653 2345799998531 11111111111111223343332 1234555666778
Q ss_pred eeEEEeeee
Q psy1826 155 ATYILAGTY 163 (169)
Q Consensus 155 ~~~~~~~~~ 163 (169)
++|.+....
T Consensus 81 G~Y~C~v~~ 89 (106)
T cd05877 81 GRYRCEVID 89 (106)
T ss_pred EEEEEEEEe
Confidence 888887643
No 307
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=95.76 E-value=0.072 Score=33.15 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=19.0
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEEC
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
.....+.|.+.+. +|++.|+|+++
T Consensus 15 ~~~~va~C~s~~g-kP~a~ItW~~~ 38 (95)
T cd05719 15 EPVTVATCVSANG-KPPATISWETT 38 (95)
T ss_pred CccEEEEEECCCC-cCCCEEEEEeC
Confidence 3456789999765 68899999987
No 308
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=95.62 E-value=0.074 Score=37.18 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=43.3
Q ss_pred cEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEEeecccccceeecceeeEEEE------EEEEeeEEEEeeeceeeEEE
Q psy1826 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLV------VLLSVSIVELTWKLEATYIL 159 (169)
Q Consensus 86 ~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 159 (169)
...|.+|+++.|.|..... ...+.+.|.++..-+..-..........+..|.. ......+-.++.+|++.|.+
T Consensus 24 ~v~V~ege~VtLsCs~t~s-~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSS-FNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEcCCCCEEEEEecCCC-CccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 4678999999999997521 3456999998643221111111222222223333 23344556677777888877
Q ss_pred eee
Q psy1826 160 AGT 162 (169)
Q Consensus 160 ~~~ 162 (169)
.-.
T Consensus 103 ~F~ 105 (189)
T PHA02987 103 IFN 105 (189)
T ss_pred EEE
Confidence 543
No 309
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=95.59 E-value=0.072 Score=32.56 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=24.6
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
.|.+..+...|+|.++|.+... ......+.+.|
T Consensus 52 tL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V 85 (88)
T cd07694 52 TLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV 85 (88)
T ss_pred EEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence 8999999999999999999764 33334444444
No 310
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=95.58 E-value=0.097 Score=33.87 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=24.0
Q ss_pred cCCcEEEcCCCcEEEEEEeecCC--CCCCeeEEE
Q psy1826 83 GGPDMYINKGSTMNLTCVIKHSP--EPPPAIYWL 114 (169)
Q Consensus 83 ~~~~~~v~~g~~~~l~C~~~~~p--~p~~~i~W~ 114 (169)
.+..+.+..|+.+.|.|...... .+...+.|.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~ 37 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWH 37 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEE
Confidence 34567788999999999987642 244699994
No 311
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=95.57 E-value=0.083 Score=32.94 Aligned_cols=28 Identities=21% Similarity=0.561 Sum_probs=22.7
Q ss_pred EEcCCCcEEEEEEeecCCCCCCeeEEEEC
Q psy1826 88 YINKGSTMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 88 ~v~~g~~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
.+.+|+.+.|.|..... .+...+.|++.
T Consensus 2 ~v~~G~~v~L~C~~~~~-~~~~~v~W~k~ 29 (105)
T cd00099 2 SVSEGESVTLSCTYSGS-FSSYYIFWYRQ 29 (105)
T ss_pred eecCCCCEEEEEEEeCC-cCcceEEEEEE
Confidence 46789999999999875 24569999974
No 312
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=95.55 E-value=0.094 Score=30.91 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=31.2
Q ss_pred CCcEEEEEEcCceeEEEEcc--eeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 2 SLAQISWVRHRDIHLLTVSG--YTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 2 ~~~~V~W~k~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.++.|.|+|++......... .....+..|.... .|.|......+...|.|.+.+.
T Consensus 14 ~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s-------~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 14 PDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSS-------YLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred CCCEEEEEECCEECCCCEEECceEECCCCCEEEEE-------EEEEccccCCCCCEEEEEEEEc
Confidence 35789999987421111111 1111334444211 5667666667778999999775
No 313
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=95.54 E-value=0.13 Score=30.98 Aligned_cols=22 Identities=14% Similarity=0.397 Sum_probs=17.4
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.|.|.....+|...|.|++.+.
T Consensus 47 ~l~~~~~~~d~g~~~tC~v~h~ 68 (83)
T cd07705 47 SVEFQVTREDDGAEITCSVGHE 68 (83)
T ss_pred EEEEEecchhCCCEEEEEEECc
Confidence 5666666677778999999986
No 314
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.52 E-value=0.15 Score=32.05 Aligned_cols=33 Identities=12% Similarity=0.414 Sum_probs=25.7
Q ss_pred cCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEEC
Q psy1826 83 GGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 83 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
.|..+.+.+|+++.|.|.+.+.. ....+.|++.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~-~~~~~~Wyrq 38 (106)
T cd04980 6 SPATLSVSPGESATISCKASQSV-SSNYLAWYQQ 38 (106)
T ss_pred CCCcEEECCCCCEEEEEEECCCC-CCCcEEEEEE
Confidence 35567899999999999987642 2468999974
No 315
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=95.50 E-value=0.071 Score=33.00 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.0
Q ss_pred EEEEcCCCCCCCeEEEEEEEc
Q psy1826 42 TLQIKYPQKRDSGIYECQVST 62 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~ 62 (169)
.+.|.+++..|+|.|.|....
T Consensus 56 ~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 56 SFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred EEEecCCCcccCEEEEEEEEC
Confidence 789999999999999999754
No 316
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=95.46 E-value=0.21 Score=32.09 Aligned_cols=72 Identities=17% Similarity=0.258 Sum_probs=38.3
Q ss_pred CCCcEEEEEEeecCCCC----------CCeeEEEECC--E-E--eecccccceeecceeeEEEEEE--------EEeeEE
Q psy1826 91 KGSTMNLTCVIKHSPEP----------PPAIYWLHNT--E-V--SQLNLMQRESESSSFVKRLVVL--------LSVSIV 147 (169)
Q Consensus 91 ~g~~~~l~C~~~~~p~p----------~~~i~W~~~~--~-~--~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 147 (169)
.|+++.|.|.......+ .+.|.|++.. . + +.... ........+.+|..+. -+-.+.
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~-~~~~~~~~f~~R~sl~~~~~~~~~asL~I~ 79 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATE-GKVRVNTEYLDRVSLPNYPAIPSDATLEIT 79 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEEC-CeEEECccccCeEEecccCCCCCCcEEEEe
Confidence 48899999998754211 3699999742 1 1 11111 1111112222233321 122356
Q ss_pred EEeeeceeeEEEeeee
Q psy1826 148 ELTWKLEATYILAGTY 163 (169)
Q Consensus 148 ~~~~~~~~~~~~~~~~ 163 (169)
.++.+|.++|++...+
T Consensus 80 nl~~sDsG~Y~C~V~~ 95 (112)
T cd05900 80 ELRSNDSGTYRCEVMH 95 (112)
T ss_pred ecccccCEEEEEEEec
Confidence 6777788889887654
No 317
>PHA02982 hypothetical protein; Provisional
Probab=95.44 E-value=0.55 Score=33.53 Aligned_cols=72 Identities=14% Similarity=0.256 Sum_probs=44.0
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCc-eEEEEEEEeccceeeecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPI-GISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~-~~~~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~~ 119 (169)
+|.|+++..+..|.|+|.+... +.. .....+.|+....+.. . -.........|-+-+...+.| .|..+|..
T Consensus 101 TLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~-W----~e~nNeT~V~CyVgS~~~dvp--~W~V~GVv 173 (251)
T PHA02982 101 TFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKEDILYV-V----EEHNNETIITCFVGSKHGDVP--RFIVAGIV 173 (251)
T ss_pred eEEeccCCcccCCceEEEEecCCCchheeheeeeEecceEEEE-E----EecCCeEEEEEEEEeccCCCc--cEEEeeEE
Confidence 8999999999999999999875 222 2234455532221111 0 012333577898866534434 79887764
Q ss_pred e
Q psy1826 120 S 120 (169)
Q Consensus 120 ~ 120 (169)
.
T Consensus 174 t 174 (251)
T PHA02982 174 T 174 (251)
T ss_pred e
Confidence 3
No 318
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=95.43 E-value=0.18 Score=31.74 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=38.9
Q ss_pred CCCcEEEEEEeecCC----CCCCeeEEEECC------EEeecccccceeecceeeEEEEE------EEEeeEEEEeeece
Q psy1826 91 KGSTMNLTCVIKHSP----EPPPAIYWLHNT------EVSQLNLMQRESESSSFVKRLVV------LLSVSIVELTWKLE 154 (169)
Q Consensus 91 ~g~~~~l~C~~~~~p----~p~~~i~W~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 154 (169)
.|+.+.|.|.....+ ...+.|.|++.. ..+.............+..+... ..+-.+-.++.+|.
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 488999999987653 124699999862 11211111111111223333332 12334455566778
Q ss_pred eeEEEeeee
Q psy1826 155 ATYILAGTY 163 (169)
Q Consensus 155 ~~~~~~~~~ 163 (169)
++|.+....
T Consensus 81 G~Y~C~v~~ 89 (106)
T cd05714 81 GRYRCEVID 89 (106)
T ss_pred EEEEEEEEc
Confidence 888887654
No 319
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=95.13 E-value=0.14 Score=31.95 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=18.5
Q ss_pred cEEEEEEeecCCCCCCeeEEEEC
Q psy1826 94 TMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 94 ~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
...+.|.+.+. +|++.|+|+++
T Consensus 17 ~~va~C~s~~g-kPaa~IsW~~~ 38 (95)
T cd07703 17 VPVAKCVSANG-RPPARISWSST 38 (95)
T ss_pred cEEEEEEcCCC-CCCcEEEEEcC
Confidence 46889988866 68899999987
No 320
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=94.90 E-value=0.17 Score=30.54 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=29.4
Q ss_pred cEEEEEEcCceeEEEEcce--eecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 4 AQISWVRHRDIHLLTVSGY--TYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 4 ~~V~W~k~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
+.|+|+|++.. +...... ....+..|... ..|.+..-..+|...|.|++.+.
T Consensus 15 ~~itW~kng~~-l~~~~~~~~~~~~~~t~~~~-------s~L~~~~~~~d~g~~ytC~v~h~ 68 (83)
T cd05884 15 ADIRWFKNDKE-IKDVKYLKEEDANRKTFTVS-------STLDFRVDRSDDGVAIICRVDHE 68 (83)
T ss_pred CEEEEEECCEE-CcCceeeEeeCCCCCEEEEE-------EEEEEEcccccCCCEEEEEEech
Confidence 68999998742 2211100 01122333321 15667665566677999999886
No 321
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=94.81 E-value=0.25 Score=31.60 Aligned_cols=33 Identities=24% Similarity=0.529 Sum_probs=25.3
Q ss_pred cCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEEC
Q psy1826 83 GGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 83 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
.+..+.+.+|+.+.|.|...... ....+.|++.
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~-~~~~v~Wyrq 37 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETSW-TNYYIFWYKQ 37 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCCC-CceEEEEEEE
Confidence 35567899999999999987531 3468999973
No 322
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=94.71 E-value=0.25 Score=38.60 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=48.1
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEecc--ceeeecCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEECCE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVEP--ITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTE 118 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~~~--p~~~~~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~ 118 (169)
+|.|++++.+..|.|+|++... ........+.|... -.+.... .......|-+-.....++.+.|..+|.
T Consensus 347 TLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W~~e~-------~n~T~V~Cyv~sy~~kp~si~wkvnGV 419 (500)
T PHA02914 347 TLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFKWNTEG-------DNETKVACYAAQYDMQPFSILWKSNGV 419 (500)
T ss_pred eEEeeeEEEEcCCceEEEEecCcchhhhhhheEeccEEEEEEEecc-------CceEEEEEEEEecccCCceeEEEEccE
Confidence 8999999999999999999775 33333333333221 1111111 223466798876534567899999988
Q ss_pred Eeeccc
Q psy1826 119 VSQLNL 124 (169)
Q Consensus 119 ~~~~~~ 124 (169)
......
T Consensus 420 ~~~G~~ 425 (500)
T PHA02914 420 SFGGEI 425 (500)
T ss_pred EecCee
Confidence 765543
No 323
>PHA03052 Hypothetical protein; Provisional
Probab=94.64 E-value=0.39 Score=27.69 Aligned_cols=40 Identities=18% Similarity=0.483 Sum_probs=31.8
Q ss_pred CcEEEcCCCcEEEEEEee-cCCCCCCeeEEEECCEEeeccc
Q psy1826 85 PDMYINKGSTMNLTCVIK-HSPEPPPAIYWLHNTEVSQLNL 124 (169)
Q Consensus 85 ~~~~v~~g~~~~l~C~~~-~~p~p~~~i~W~~~~~~~~~~~ 124 (169)
..+.+..|.++.+.|++. |.|...+.+.|.-|+..++.++
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d 45 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDD 45 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccc
Confidence 556788999999999986 4445567999999999885544
No 324
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=94.60 E-value=0.28 Score=30.40 Aligned_cols=55 Identities=15% Similarity=0.352 Sum_probs=29.8
Q ss_pred CCcEEEEEEcCceeEEEE--cceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 2 SLAQISWVRHRDIHLLTV--SGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 2 ~~~~V~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.+++|+|+|++....... .......+..|.... .|.+..-...+...|.|.+.+.
T Consensus 29 ~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S-------~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 29 GTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTS-------ELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred CCCEEEEEECCEECcCceeecccEECCCCcEEEEE-------EEEEchHHhcCCCeEEEEEEEC
Confidence 368999999874211111 011122334444211 4555544444567999999886
No 325
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=94.55 E-value=0.1 Score=30.32 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.3
Q ss_pred EEEEcCCCCCCCeEEEEEEEc
Q psy1826 42 TLQIKYPQKRDSGIYECQVST 62 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~ 62 (169)
.|-+..+..+..|.|.|.+.+
T Consensus 34 tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 34 LLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred EEeccCcccCCCcceEecCcc
Confidence 677888888999999998866
No 326
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.21 E-value=0.62 Score=29.53 Aligned_cols=34 Identities=32% Similarity=0.459 Sum_probs=24.4
Q ss_pred CCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CC
Q psy1826 28 QRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PP 65 (169)
Q Consensus 28 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~ 65 (169)
.|+.....+. .|.|+.++..|+|.|.=.+.+. +.
T Consensus 62 ~r~~F~~enl----aLlIkaAq~qDSG~Y~LEvT~~sG~ 96 (108)
T PF11465_consen 62 NRFNFTSENL----ALLIKAAQPQDSGLYCLEVTNESGK 96 (108)
T ss_dssp HHEEEETTTT----EEEESS-SGGG-EEEEEEEEETTSC
T ss_pred ceEeeeccCc----eEEEeecCcccCceEEEEEEcCCCc
Confidence 4666444444 9999999999999998888776 44
No 327
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=94.09 E-value=0.3 Score=30.57 Aligned_cols=55 Identities=18% Similarity=0.296 Sum_probs=30.2
Q ss_pred CCcEEEEEEcCceeEEEEc--ceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 2 SLAQISWVRHRDIHLLTVS--GYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 2 ~~~~V~W~k~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.+++|.|+|+|........ ......+..|+... .|.+..-...+...|.|.+.+.
T Consensus 32 ~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s-------~L~v~~~~w~~~~~~sC~V~H~ 88 (100)
T cd07699 32 GFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSS-------YLTLTKSDWNKHKVYTCEVTHE 88 (100)
T ss_pred CCCEEEEEECCEECcccEeccccEECCCCCEEEEE-------EEEEcHHHhCCCCeEEEEEEec
Confidence 4689999998742211111 11111244555311 4555555544567999999885
No 328
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=93.85 E-value=0.31 Score=30.84 Aligned_cols=36 Identities=8% Similarity=0.288 Sum_probs=24.6
Q ss_pred EEEcCCCcEEEEEEeec------C---CCCCCeeEEEECCEEeec
Q psy1826 87 MYINKGSTMNLTCVIKH------S---PEPPPAIYWLHNTEVSQL 122 (169)
Q Consensus 87 ~~v~~g~~~~l~C~~~~------~---p~p~~~i~W~~~~~~~~~ 122 (169)
..+.+|+.+.|.|.... . ..+...+.|++++.....
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~ 54 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEE 54 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCC
Confidence 56789999999998611 0 012348999999755444
No 329
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=93.70 E-value=0.67 Score=28.45 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=10.9
Q ss_pred CCCeEEEEEEEcC
Q psy1826 51 RDSGIYECQVSTT 63 (169)
Q Consensus 51 ~D~G~Y~C~~~~~ 63 (169)
.+...|.|.+.+.
T Consensus 70 ~~~~~ytC~V~H~ 82 (93)
T cd07698 70 EDKARYSCRVEHS 82 (93)
T ss_pred CCCCEEEEEEEeC
Confidence 4778999999886
No 330
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=93.69 E-value=0.61 Score=30.06 Aligned_cols=34 Identities=9% Similarity=0.200 Sum_probs=24.0
Q ss_pred cCCcEEEcCCCcEEEEEEeecCC----CCCCeeEEEEC
Q psy1826 83 GGPDMYINKGSTMNLTCVIKHSP----EPPPAIYWLHN 116 (169)
Q Consensus 83 ~~~~~~v~~g~~~~l~C~~~~~p----~p~~~i~W~~~ 116 (169)
.|..+.+.+|+.+.|.|.....+ .....+.|++.
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq 42 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKG 42 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeC
Confidence 35667889999999999865321 11246899975
No 331
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=93.43 E-value=1.4 Score=28.63 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=40.3
Q ss_pred CCcEEEEEEeecCCC---------CCCeeEEEEC-----C-----EEeecccccceeecceeeEEEEEE--------EEe
Q psy1826 92 GSTMNLTCVIKHSPE---------PPPAIYWLHN-----T-----EVSQLNLMQRESESSSFVKRLVVL--------LSV 144 (169)
Q Consensus 92 g~~~~l~C~~~~~p~---------p~~~i~W~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 144 (169)
|+++.|.|.....|. ....|.|++- + ..+.............+.+|..+. .+-
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 678999999886542 1248999863 1 111111111112223444455542 333
Q ss_pred eEEEEeeeceeeEEEeeeee
Q psy1826 145 SIVELTWKLEATYILAGTYT 164 (169)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~ 164 (169)
.+...+.+|.+.|++.-.+-
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g 101 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHG 101 (117)
T ss_pred EEcccccccCEEEEEEEEEC
Confidence 45566667788888876654
No 332
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=93.43 E-value=0.77 Score=30.38 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=16.3
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.|.|..-...+...|.|.+.+.
T Consensus 109 ~L~v~~~~~~~g~~ytC~V~H~ 130 (139)
T cd05771 109 HLTLEPGTEDAGATYTCRVSHV 130 (139)
T ss_pred EEEecCCccCCCCEEEEEEEcC
Confidence 5667666555667999999875
No 333
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=93.28 E-value=1.1 Score=28.68 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=41.3
Q ss_pred CCCcEEEEEEeecCCC-----CCCeeEEEECC-----EE--eecccccceeecceeeEEEEEEE--------EeeEEEEe
Q psy1826 91 KGSTMNLTCVIKHSPE-----PPPAIYWLHNT-----EV--SQLNLMQRESESSSFVKRLVVLL--------SVSIVELT 150 (169)
Q Consensus 91 ~g~~~~l~C~~~~~p~-----p~~~i~W~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 150 (169)
.|+++.|.|...-.|. ..+.|.|.+.. .. +.............+.+|..+.. +..+..++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 3788999999764332 24799998741 11 11111112122344555655532 33445566
Q ss_pred eeceeeEEEeeeee
Q psy1826 151 WKLEATYILAGTYT 164 (169)
Q Consensus 151 ~~~~~~~~~~~~~~ 164 (169)
.+|.++|++.-.+-
T Consensus 81 ~~D~G~Y~C~v~~g 94 (110)
T cd05902 81 YSDSGTYRCEVVLG 94 (110)
T ss_pred HHHCEEEEEEEEEC
Confidence 67788888876653
No 334
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=93.23 E-value=1.3 Score=28.42 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=26.3
Q ss_pred CcEEEEEEcCceeEEEEcceee-cCC-CCeEEEecCCCCeEEEEEcCCCCCCCe-EEEEEEEcC
Q psy1826 3 LAQISWVRHRDIHLLTVSGYTY-TSD-QRFSCIHKPQNEDWTLQIKYPQKRDSG-IYECQVSTT 63 (169)
Q Consensus 3 ~~~V~W~k~~~~~~~~~~~~~~-~~~-~r~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~~~~~ 63 (169)
+++|+|+|+|.. ......... ..+ ..|... ..|.+.. ...|.| .|.|.+.+.
T Consensus 37 ~i~v~W~kng~~-~~~~~~~~~p~~d~~ty~~~-------S~L~~~~-~~~d~~~~ytC~V~H~ 91 (111)
T cd05772 37 DITVKWLKNGNE-LSAEQPNITPEGDSVSYNVT-------STVQVKL-TEDDVHSQVTCEVQHR 91 (111)
T ss_pred CCEEEEEECCEE-CcccccceeeCCCCCcEEEE-------EEEEEEC-ccccccCceEEEEEeC
Confidence 578999998742 211111111 112 133321 1455554 334444 599999886
No 335
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=93.23 E-value=0.88 Score=28.20 Aligned_cols=52 Identities=19% Similarity=0.334 Sum_probs=28.4
Q ss_pred CCcEEEEEEcCceeEEEE--cceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 2 SLAQISWVRHRDIHLLTV--SGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 2 ~~~~V~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.++.|+|.|+|....... .......+..|.+.. .|.+.. .+...|.|.+.+.
T Consensus 30 ~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s-------~L~v~~---~~~~~ytC~V~H~ 83 (94)
T cd05767 30 PVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFS-------YLNFTP---EEGDIYSCIVEHW 83 (94)
T ss_pred CcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEE-------EEEEEC---CCCCeEEEEEEeC
Confidence 468999999874211111 111122345555311 455543 3455899999885
No 336
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=93.21 E-value=0.26 Score=29.53 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=28.1
Q ss_pred CCcEEEEEEcCceeEEEE--cceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 2 SLAQISWVRHRDIHLLTV--SGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 2 ~~~~V~W~k~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.++.|.|++++....... .......+..|.+.. .|.+. ..+...|.|.+.+.
T Consensus 23 ~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s-------~l~v~---~~~~~~ysC~V~H~ 76 (83)
T PF07654_consen 23 KDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTS-------SLTVT---WNSGDEYSCRVTHE 76 (83)
T ss_dssp STEEEEEEETTEEETTTEEEEEEEEETTSEEEEEE-------EEEEE---TTTTGGEEEEEEET
T ss_pred CCcEEEEEeccceeeeeeeecccccccccceeeeE-------EEEec---CCCCCEEEEEEEEC
Confidence 468999999874211000 001112345555321 45555 44455899999875
No 337
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=93.18 E-value=1.1 Score=27.72 Aligned_cols=24 Identities=17% Similarity=0.447 Sum_probs=17.2
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEEC
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
|+.+.|.|...... ....+.|++.
T Consensus 1 G~~vtL~C~~~~~~-~~~~v~W~k~ 24 (97)
T cd05846 1 GGNVTLSCNLTLPE-EVLQVTWQKI 24 (97)
T ss_pred CCcEEEEEEeCCCC-eeEEEEEEEc
Confidence 68899999865532 2347999874
No 338
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=93.01 E-value=0.46 Score=29.28 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=22.6
Q ss_pred EEEcCCCcEEEEEEeecCCCCCCeeEEEECC
Q psy1826 87 MYINKGSTMNLTCVIKHSPEPPPAIYWLHNT 117 (169)
Q Consensus 87 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~ 117 (169)
+.+.+|+++.|.|..... .+...+.|++..
T Consensus 2 v~~~~G~~vtl~C~~~~~-~~~~~~~W~r~~ 31 (98)
T cd05716 2 VTGELGGSVTIPCPYPPK-NRSYEKYWCKWG 31 (98)
T ss_pred EEEEeCCeEEEEeeCCCC-CCCcEeEeECCC
Confidence 457899999999987653 245689999753
No 339
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=93.00 E-value=1.2 Score=27.39 Aligned_cols=26 Identities=15% Similarity=0.453 Sum_probs=17.4
Q ss_pred CCcEEEEEEeecCCC-CCCeeEEEECC
Q psy1826 92 GSTMNLTCVIKHSPE-PPPAIYWLHNT 117 (169)
Q Consensus 92 g~~~~l~C~~~~~p~-p~~~i~W~~~~ 117 (169)
|+.+.|.|....... ....+.|++..
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~ 27 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQ 27 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECC
Confidence 678999999853211 22478998754
No 340
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=92.93 E-value=0.1 Score=34.43 Aligned_cols=72 Identities=13% Similarity=0.169 Sum_probs=36.6
Q ss_pred CCcEEEEEEcCceeEEEEccee----ecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEec
Q psy1826 2 SLAQISWVRHRDIHLLTVSGYT----YTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVE 76 (169)
Q Consensus 2 ~~~~V~W~k~~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v~~ 76 (169)
+.+.|.|..++. .+....... ...-++..+ ..-..++.+|.+.....- .|.|+|.+... ......+.|....
T Consensus 45 ~~m~VkWk~~~~-~If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~~~ 121 (130)
T PF08204_consen 45 SEMYVKWKFKNK-DIFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-EGNYTCEVTELSREGETTIELKYRV 121 (130)
T ss_dssp GGEEEEEEETTE-EEEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE--
T ss_pred ceEEEEEEECCe-EEEEEcCccceecccCccccch-hHhhCCCEEEEEcchhcc-ccceEEEEEecCCCceEEEEEEEEE
Confidence 467899998774 333222211 001123332 111235567888775544 79999999775 4455556665543
No 341
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=92.85 E-value=1.1 Score=27.89 Aligned_cols=54 Identities=15% Similarity=0.277 Sum_probs=26.9
Q ss_pred CCcEEEEEEcCceeEEEEc--ceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 2 SLAQISWVRHRDIHLLTVS--GYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 2 ~~~~V~W~k~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.++.|+|+|++.. ..... ......+..|.... .|.+..-...+.-.|.|.+.+.
T Consensus 30 ~~i~v~W~r~~~~-~~~~~~~~~~~~~dgty~~~s-------~l~v~~~~w~~g~~ysC~V~H~ 85 (96)
T cd07696 30 EGVNVTWTRGSGE-PVKASIQPPESHNNATLSVTS-------TLNVSTDDWISGDTFQCKVTHP 85 (96)
T ss_pred CCcEEEEEECCeE-eeeEEecccccCCCCCEEEEE-------EEEeCHHHccCCCcEEEEEECC
Confidence 4689999998632 22111 11112233344211 3444433222334799999885
No 342
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=92.75 E-value=0.59 Score=29.10 Aligned_cols=31 Identities=16% Similarity=0.578 Sum_probs=24.7
Q ss_pred CCcEEEcCCCcEEEEEEeecCCCCCCeeEEEE
Q psy1826 84 GPDMYINKGSTMNLTCVIKHSPEPPPAIYWLH 115 (169)
Q Consensus 84 ~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~ 115 (169)
+..+.+.+|+.+.|.|.... +.....+.|++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~-~~~~~~v~W~~ 38 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSS-SSNQSSVYWYR 38 (114)
T ss_dssp ESEEEEETTSEEEEEEEEES-SSSGSEEEEEE
T ss_pred CCeEEEecCCCEEEEEEEeC-CCCcceEEEEE
Confidence 45577899999999999982 23556999997
No 343
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=92.63 E-value=0.35 Score=29.98 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=39.4
Q ss_pred CCCcEEEEEEeecCCCCCCeeEEEECCEEeecccc-----cceeecceeeEEEEEEE---EeeEEEEeeeceeeEEEeee
Q psy1826 91 KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLM-----QRESESSSFVKRLVVLL---SVSIVELTWKLEATYILAGT 162 (169)
Q Consensus 91 ~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 162 (169)
.|+++.|.|..... .....+.|+++...+..... ........+..|+.+.. +=.+...+.+|.++|.++-.
T Consensus 3 ~G~sVtL~c~~~~~-~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 3 LGGSVTLPLNIPDG-TEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred cCCeEEEeCCCCCC-cEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 69999999987541 23469999987544332221 11111122223333211 12345566777888887655
Q ss_pred ee
Q psy1826 163 YT 164 (169)
Q Consensus 163 ~~ 164 (169)
..
T Consensus 82 ~~ 83 (97)
T cd05775 82 TK 83 (97)
T ss_pred cC
Confidence 43
No 344
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=92.58 E-value=0.45 Score=29.48 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=27.9
Q ss_pred CCcEEEEEEcCceeEEEEcc--eeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 2 SLAQISWVRHRDIHLLTVSG--YTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 2 ~~~~V~W~k~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.++.|+|+|+|.... .... .....+..|.+.. .|.+. ..+...|.|.+.+.
T Consensus 30 ~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s-------~l~~~---~~~~~~ysC~V~H~ 82 (93)
T cd05770 30 PDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLK-------STEFT---PTKGDEYACRVRHN 82 (93)
T ss_pred CCCEEEEEECCEECC-CcEECcEEECCCCCEEEEE-------EEEEC---CCCCCeEEEEEEEC
Confidence 368899999884211 1111 1112344444211 34444 45666899999885
No 345
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=92.56 E-value=0.44 Score=28.82 Aligned_cols=71 Identities=21% Similarity=0.173 Sum_probs=37.2
Q ss_pred CCcEEEEEEeecCCCCCCeeEEEECCEEeeccc------ccceeecceeeEEEEEE--EEeeEEEEeeeceeeEEEeeee
Q psy1826 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNL------MQRESESSSFVKRLVVL--LSVSIVELTWKLEATYILAGTY 163 (169)
Q Consensus 92 g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 163 (169)
|+++.|.|.... .+...+.|+++........ .........+.+|..+. -+=.+...+.+|.+.|.+.-..
T Consensus 1 G~~VtL~c~~~~--~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~ 78 (92)
T cd05741 1 GESVTLPVSNLP--ENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIS 78 (92)
T ss_pred CCcEEEEcccCC--CCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEc
Confidence 788999998765 3456999998653221100 00001111112222211 1223556677788888877655
Q ss_pred e
Q psy1826 164 T 164 (169)
Q Consensus 164 ~ 164 (169)
.
T Consensus 79 ~ 79 (92)
T cd05741 79 T 79 (92)
T ss_pred C
Confidence 4
No 346
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=92.32 E-value=1.4 Score=27.24 Aligned_cols=52 Identities=12% Similarity=0.259 Sum_probs=26.9
Q ss_pred CCcEEEEEEcCceeEEE--EcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 2 SLAQISWVRHRDIHLLT--VSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 2 ~~~~V~W~k~~~~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.++.|+|+|++...... ........+..|.+.. .|.+. ..+...|.|.+.+.
T Consensus 29 ~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s-------~L~~~---~~~~~~ysC~V~H~ 82 (94)
T cd05766 29 PEITVKWFKNGQEETEGVVSTELIPNGDWTYQILV-------MLETT---PSRGDTYTCVVEHS 82 (94)
T ss_pred CCCEEEEEECCeecCCCceecceEECCCCcEEEEE-------EEEEc---CCCCCEEEEEEEeC
Confidence 36789999987421111 1111112233444211 34443 33556899999886
No 347
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=91.45 E-value=1.3 Score=27.61 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=35.5
Q ss_pred CcEEEEEEeecCCCCCCeeEEEECCE----Ee-ecccccceeecceeeEEEEEE------EEeeEEEEeeeceeeEEEe
Q psy1826 93 STMNLTCVIKHSPEPPPAIYWLHNTE----VS-QLNLMQRESESSSFVKRLVVL------LSVSIVELTWKLEATYILA 160 (169)
Q Consensus 93 ~~~~l~C~~~~~p~p~~~i~W~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 160 (169)
+++.|.|..... ....+++|.+... .+ .+.......-...+.+|+.+. .+..+-.++.+|.+.|++.
T Consensus 1 ~~vtL~C~~~~~-~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~ 78 (96)
T cd05889 1 EKMKLECVYPKT-GVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCS 78 (96)
T ss_pred CCEEEEeEcCCC-CcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEE
Confidence 367899988643 3467999987321 12 211111222223444555544 3344556666677777664
No 348
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=91.39 E-value=0.29 Score=36.05 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=25.7
Q ss_pred CCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 26 SDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 26 ~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.++++. +...| .|.+.+.+.+++|.|+|...-.
T Consensus 27 gn~~~n-IT~TG----~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 27 GNSYVN-ITETG----KLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCCeEE-EccCc----eEEeeccccccCCceEEEEEEE
Confidence 345666 44455 8999999999999999998654
No 349
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=91.36 E-value=1.3 Score=28.07 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=39.7
Q ss_pred EEEcCCCcEEEEEEeecCCCCCCeeEEEECCE-----Ee-ecccc-cceeecceeeEEEEEEE--EeeEEEEeeeceeeE
Q psy1826 87 MYINKGSTMNLTCVIKHSPEPPPAIYWLHNTE-----VS-QLNLM-QRESESSSFVKRLVVLL--SVSIVELTWKLEATY 157 (169)
Q Consensus 87 ~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~~~-----~~-~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 157 (169)
..+.+|+.+.|.|.. .|.+...++|+++.. .+ .+... ..........+|..+.. +-++-..+.+|.+.|
T Consensus 8 ~~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y 85 (105)
T cd05774 8 PQVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFY 85 (105)
T ss_pred CcccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEE
Confidence 456789999999854 344556999999532 11 11111 11111111223333222 334566777788888
Q ss_pred EEeee
Q psy1826 158 ILAGT 162 (169)
Q Consensus 158 ~~~~~ 162 (169)
.+.-.
T Consensus 86 ~~~v~ 90 (105)
T cd05774 86 TLQTI 90 (105)
T ss_pred EEEEE
Confidence 77644
No 350
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=91.36 E-value=0.84 Score=28.31 Aligned_cols=54 Identities=11% Similarity=0.203 Sum_probs=28.4
Q ss_pred CCcEEEEEEcCceeEEEEc--ceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 2 SLAQISWVRHRDIHLLTVS--GYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 2 ~~~~V~W~k~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
..+.|+|+|+|.. ..... ......+..|.... .|.+..-.......|.|.+.+.
T Consensus 31 ~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s-------~L~v~~~~w~~~~~ytC~V~H~ 86 (95)
T cd04985 31 EPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASS-------QLTVPASEWKGKESFYCKVEHP 86 (95)
T ss_pred CCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEE-------EEEEeHHHcCCCCcEEEEEEeC
Confidence 3688999998752 11110 11111244555311 4555543322345799999885
No 351
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=91.13 E-value=0.58 Score=28.66 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=24.3
Q ss_pred CcEEEcCCCcEEEEEEeecCCCCCCeeEEEEC
Q psy1826 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 85 ~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
+...+..|+.+.|+|.+...+.|-+.|.|...
T Consensus 7 ~~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P 38 (88)
T cd07694 7 SSDHVLSGTNLTLTLHGSSNSLPAFKVEWRGP 38 (88)
T ss_pred CCCeeecCCcEEEEEecCCCCCCCccEEEeCC
Confidence 34567789999999998665445569999853
No 352
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=90.81 E-value=1.6 Score=23.57 Aligned_cols=27 Identities=37% Similarity=0.768 Sum_probs=20.6
Q ss_pred EEEEEEeecCCCCCCeeEEEECCEEeecc
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~~~~~~~~~ 123 (169)
+.|.|.+.+ .+.+.+.|++++......
T Consensus 1 ~~l~C~~~~--~~~~~~~W~~~~~~~~~~ 27 (74)
T cd00096 1 VTLTCLASG--PPPPTITWLKNGKPLPSS 27 (74)
T ss_pred CEEEEEecC--CCCCcEEEEECCEECCCc
Confidence 368899988 367899999988765543
No 353
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=90.80 E-value=0.41 Score=29.58 Aligned_cols=29 Identities=17% Similarity=0.408 Sum_probs=21.5
Q ss_pred EEcCCCcEEEEEEeecCCCCCCeeEEEEC
Q psy1826 88 YINKGSTMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 88 ~v~~g~~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
.+.+|+++.|.|...........+.|++.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q 30 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQ 30 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEE
Confidence 46789999999998663112358999874
No 354
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=90.77 E-value=0.59 Score=29.47 Aligned_cols=28 Identities=29% Similarity=0.595 Sum_probs=21.6
Q ss_pred EEcCCCcEEEEEEeecCCCCCCeeEEEEC
Q psy1826 88 YINKGSTMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 88 ~v~~g~~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
.+.+|+++.|.|...+.. ....+.|++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~-~~~~~~Wyrq 29 (107)
T cd07700 2 LVQTNNTVKLSCEAKGIS-ENTRIYWLRW 29 (107)
T ss_pred EEcCCCCEEEEEEEecCC-CCCeEEEEEE
Confidence 578999999999986632 2358999974
No 355
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=90.39 E-value=0.89 Score=29.26 Aligned_cols=34 Identities=12% Similarity=0.320 Sum_probs=24.6
Q ss_pred cCCcEEEcCCCcEEEEEEeecCCCCCCeeEEEEC
Q psy1826 83 GGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 83 ~~~~~~v~~g~~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
.+....+.+|+++.|.|.......-...+.|++.
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ 36 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQ 36 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEE
Confidence 3566789999999999987643111347999973
No 356
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=90.23 E-value=7.9 Score=30.64 Aligned_cols=81 Identities=7% Similarity=0.113 Sum_probs=50.8
Q ss_pred CCeEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEeccceeeecCCcEEEcCCCcEEEEEEeecCCC-CCCeeEEEEC
Q psy1826 38 NEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPE-PPPAIYWLHN 116 (169)
Q Consensus 38 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~p~-p~~~i~W~~~ 116 (169)
...+++.+.++...|+|.|.|.+...........+.|.+.|.+-..... +. ...+...|.....-. -.+.+.-.-+
T Consensus 78 dkeYsf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVmPKId~t~~~--~~-dk~~~y~CNrtrtm~dd~vKv~~iaG 154 (500)
T PHA02914 78 DKEYSFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKAPKIDTTFLE--FN-DKHTCICCKIDKPMNQDALKVFFVAG 154 (500)
T ss_pred cceeEEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEccceeeeeee--cC-CCcEEEEEecCcccccCceeEEEEec
Confidence 4667889999999999999999988766666677777777764433221 22 233455576654211 2235544455
Q ss_pred CEEee
Q psy1826 117 TEVSQ 121 (169)
Q Consensus 117 ~~~~~ 121 (169)
|.-+.
T Consensus 155 GV~v~ 159 (500)
T PHA02914 155 GVNVD 159 (500)
T ss_pred cEEEc
Confidence 55544
No 357
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=90.13 E-value=1.2 Score=27.81 Aligned_cols=53 Identities=11% Similarity=0.214 Sum_probs=26.0
Q ss_pred CCcEEEEEEcCceeEEEEc-ceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 2 SLAQISWVRHRDIHLLTVS-GYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 2 ~~~~V~W~k~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
..+.|+|.|+|........ ......+..|.... .|.|..-.. ...|.|.+.+.
T Consensus 31 ~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S-------~L~vt~~~~--~~~ysC~V~H~ 84 (96)
T cd07697 31 DVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTS-------WLTVTKDSL--GKKFRCIYKHE 84 (96)
T ss_pred CCeEEEEEECCEECcCCeEeccEecCCCEEEEEE-------EEEECchhC--CCeEEEEEEEC
Confidence 3678999998742111111 11111222343211 455543322 23599999885
No 358
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=89.64 E-value=1.9 Score=26.33 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=17.5
Q ss_pred CcEEEEEEeecCCC-CCCeeEEEECC
Q psy1826 93 STMNLTCVIKHSPE-PPPAIYWLHNT 117 (169)
Q Consensus 93 ~~~~l~C~~~~~p~-p~~~i~W~~~~ 117 (169)
+.+.|.|.....+. +...|.|++..
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~ 26 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKIT 26 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeEC
Confidence 46899999876431 24589999854
No 359
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=89.42 E-value=2.3 Score=26.75 Aligned_cols=22 Identities=14% Similarity=0.394 Sum_probs=14.9
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.|.+..-..+|.-.|.|++.+.
T Consensus 63 tlt~~~~r~D~g~~~sC~A~l~ 84 (100)
T cd05755 63 TITITVDREDHGANFSCETELD 84 (100)
T ss_pred EEEEecchhhCCcEEEEEEEec
Confidence 5666544444444999999886
No 360
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=88.97 E-value=1.2 Score=28.77 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=24.8
Q ss_pred CCcEEEcCCCcEEEEEEeecCCCCC-CeeEEEEC
Q psy1826 84 GPDMYINKGSTMNLTCVIKHSPEPP-PAIYWLHN 116 (169)
Q Consensus 84 ~~~~~v~~g~~~~l~C~~~~~p~p~-~~i~W~~~ 116 (169)
+....+.+|+.+.|.|++.+..... ..+.|.|+
T Consensus 5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq 38 (115)
T cd05721 5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKG 38 (115)
T ss_pred cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEe
Confidence 3446678899999999998764444 68899873
No 361
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=88.77 E-value=1.9 Score=27.07 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=26.1
Q ss_pred CCcEEEEEEcCceeEEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 2 SLAQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 2 ~~~~V~W~k~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.++.|.|.+++....... ......+..|++.. .|.|..-.......|.|++.+.
T Consensus 35 ~~i~V~W~~~g~~~~~~t-~~~~~~dgTys~~S-------~L~v~~~~W~~g~~ytC~V~H~ 88 (99)
T cd04986 35 EGAVFTWTPSGGKEAVQT-SAESDQCGCYSVSS-------VLPGCAEEWNKGEPFACTVTHP 88 (99)
T ss_pred CCeEEEEEECCccCcEEc-CcccCCCCCEEEEE-------EEEeCHHHhcCCCeEEEEEECC
Confidence 468999999874211110 01111234444211 3444322122224699999885
No 362
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=88.59 E-value=1.2 Score=27.91 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=13.8
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.|.|..-...+...|.|.+.+.
T Consensus 69 ~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 69 KLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred EEEEcHHHhcCCCcEEEEeEeC
Confidence 4555333334456899999885
No 363
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=87.96 E-value=3.7 Score=25.45 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=15.7
Q ss_pred cEEEEEEeecCCC-CCCeeEEEEC
Q psy1826 94 TMNLTCVIKHSPE-PPPAIYWLHN 116 (169)
Q Consensus 94 ~~~l~C~~~~~p~-p~~~i~W~~~ 116 (169)
++.|.|.....+. ....+.|++.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~ 25 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRE 25 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEc
Confidence 5789998865321 1348999973
No 364
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=87.58 E-value=3.2 Score=26.79 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=15.0
Q ss_pred EEEEcCCCCCC-CeEEEEEEEcC
Q psy1826 42 TLQIKYPQKRD-SGIYECQVSTT 63 (169)
Q Consensus 42 ~L~I~~v~~~D-~G~Y~C~~~~~ 63 (169)
.|.|..-...+ .-.|.|.+.+.
T Consensus 69 ~L~v~~~~w~~~~~~ytC~V~H~ 91 (115)
T cd05769 69 RLRVSATEWFNPRNTFTCIVQFY 91 (115)
T ss_pred EEEEChHHhccCCCeEEEEEEEe
Confidence 56666554434 45899999886
No 365
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=87.04 E-value=5.4 Score=24.75 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=16.7
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.|.+..-..+|...|.|++.+.
T Consensus 60 ~l~~~P~~~d~Gk~ltC~v~h~ 81 (95)
T cd07703 60 EYSLVPTPEANGKEVTCKVEHE 81 (95)
T ss_pred EEEEecCHHHCCCEEEEEEeCc
Confidence 5666666666667999999986
No 366
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=86.72 E-value=4.1 Score=25.35 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=16.7
Q ss_pred CcEEEEEEeecCCCCCCeeEEEEC
Q psy1826 93 STMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 93 ~~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
+++.|.|.....+ ....++|.+.
T Consensus 1 ~~vtL~C~~~~~~-~~~qV~W~k~ 23 (96)
T cd05887 1 KNVTLKCRIQVNE-TITQSSWEKI 23 (96)
T ss_pred CCEEEEEEecCCC-cEEEEEEEEc
Confidence 3688999987542 4569999873
No 367
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=84.56 E-value=7.6 Score=24.22 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=34.6
Q ss_pred cEEEEEEeecCCC--CCCeeEEEEC--CE--Ee-ecccccceeecceeeEEEEEE------EEeeEEEEeeeceeeEEEe
Q psy1826 94 TMNLTCVIKHSPE--PPPAIYWLHN--TE--VS-QLNLMQRESESSSFVKRLVVL------LSVSIVELTWKLEATYILA 160 (169)
Q Consensus 94 ~~~l~C~~~~~p~--p~~~i~W~~~--~~--~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 160 (169)
.+.|.|.....+. ....++|.+. +. .+ .+...........+.+|..+. .+..+-.++-+|++.|++.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 4789999875321 1127999863 11 12 112111222223445555543 3445556667777777765
No 368
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=84.31 E-value=1.9 Score=27.04 Aligned_cols=27 Identities=26% Similarity=0.582 Sum_probs=20.5
Q ss_pred EEcCCCcEEEEEEeecCCCCCCeeEEEEC
Q psy1826 88 YINKGSTMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 88 ~v~~g~~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
.+.+|+.+.|.|..... ....+.|++.
T Consensus 2 ~v~~G~~vtL~C~~~~~--~~~~v~Wyrq 28 (104)
T cd05720 2 DAELGQKVELKCEVLNS--SPTGCSWLFQ 28 (104)
T ss_pred cccCCCeEEEEEEecCC--CCCcEEEEEe
Confidence 36789999999988653 2357999974
No 369
>KOG1480|consensus
Probab=81.10 E-value=0.62 Score=39.44 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.|.|..+...|.|.|+|.+.|.
T Consensus 184 ~li~~~arlsd~~nytc~a~ni 205 (909)
T KOG1480|consen 184 NLIISQARLSDSGNYTCEATNI 205 (909)
T ss_pred Cccccchhhhhcccceeeeehh
Confidence 7899999999999999999887
No 370
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=80.97 E-value=3.4 Score=25.93 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=24.2
Q ss_pred EcCCCcEEEEEEeecC-CCCCCeeEEEECCEEee
Q psy1826 89 INKGSTMNLTCVIKHS-PEPPPAIYWLHNTEVSQ 121 (169)
Q Consensus 89 v~~g~~~~l~C~~~~~-p~p~~~i~W~~~~~~~~ 121 (169)
+.+|..+.+.|.+.+. |.....+.|+++...+.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~ 45 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLP 45 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceec
Confidence 4689999999999864 22236899998665544
No 371
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=80.85 E-value=11 Score=23.32 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=16.4
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.|.+.....+|.-.|.|++.+.
T Consensus 60 ~l~~~p~~~d~G~~~tC~v~h~ 81 (95)
T cd05719 60 EYRLVPSREANGKELTCVVSHP 81 (95)
T ss_pred EEEEecCHHHCCCEEEEEEeCc
Confidence 5666666666666999999886
No 372
>PHA03042 CD47-like protein; Provisional
Probab=76.80 E-value=21 Score=26.79 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=19.1
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSV 74 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~v 74 (169)
+|.+..-.. -.|.|+|.+.+. ......+.++.
T Consensus 72 SL~~~f~~~-l~GNYTCEv~~l~n~gk~~IeLk~ 104 (286)
T PHA03042 72 SLKFNFSKN-LSGNYTCEAINKFNKIKNTIELQY 104 (286)
T ss_pred EEEEecccc-CCCceeEEEeecccCccEEEEEEE
Confidence 565543333 269999998775 44444445443
No 373
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=76.78 E-value=15 Score=28.43 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=18.9
Q ss_pred cEEEEEEeecCCCCCCeeEEEEC
Q psy1826 94 TMNLTCVIKHSPEPPPAIYWLHN 116 (169)
Q Consensus 94 ~~~l~C~~~~~p~p~~~i~W~~~ 116 (169)
.+.|.|.+.|+-.+...++|.+|
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999996334679999999
No 374
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=75.66 E-value=8.2 Score=23.65 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=27.6
Q ss_pred cCCcEEEcCCCcEEEEEEeecCC---CCCCeeEEEECCEEeecc
Q psy1826 83 GGPDMYINKGSTMNLTCVIKHSP---EPPPAIYWLHNTEVSQLN 123 (169)
Q Consensus 83 ~~~~~~v~~g~~~~l~C~~~~~p---~p~~~i~W~~~~~~~~~~ 123 (169)
.++...+..|.++...|.....- .....|.|..++..+..+
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~ 52 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS 52 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh
Confidence 34556678999999999886431 245699999988855443
No 375
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=74.70 E-value=2.3 Score=24.43 Aligned_cols=26 Identities=38% Similarity=0.730 Sum_probs=19.3
Q ss_pred CCCcEEEEEEeecCCCCCCeeEEEECCEEee
Q psy1826 91 KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQ 121 (169)
Q Consensus 91 ~g~~~~l~C~~~~~p~p~~~i~W~~~~~~~~ 121 (169)
.|.++.|+|..... .+.|.+++..+.
T Consensus 6 sGTtVtlTCP~~~~-----~i~W~~n~~~~~ 31 (65)
T cd07692 6 SGTTVTVTCPLSGD-----DIKWKKNDQVSQ 31 (65)
T ss_pred eccEEEEECCCCCC-----CceEEeCCccCC
Confidence 58889999976532 499999985544
No 376
>PHA03376 BARF1; Provisional
Probab=74.40 E-value=29 Score=24.80 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=21.5
Q ss_pred cEEEcCCCcEEEEEEeecC-CCCCCeeEEEEC
Q psy1826 86 DMYINKGSTMNLTCVIKHS-PEPPPAIYWLHN 116 (169)
Q Consensus 86 ~~~v~~g~~~~l~C~~~~~-p~p~~~i~W~~~ 116 (169)
.+.+..|+.+.|.|..... -.+.-.|.|++.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs 51 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKL 51 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEec
Confidence 3556679999999976521 124569999994
No 377
>PHA03282 envelope glycoprotein E; Provisional
Probab=74.34 E-value=8.7 Score=30.98 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEE
Q psy1826 39 EDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYL 72 (169)
Q Consensus 39 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l 72 (169)
+...|++.|....++|.|.|.+.-++....+...
T Consensus 331 n~VdL~F~nAp~saSGLYVfVl~yNGHVeAW~Yt 364 (540)
T PHA03282 331 HTVNLQLRDASEASGGLYVCVVYVNGHVHAWGHV 364 (540)
T ss_pred CccceEecCCCcccCceEEEEEEECCeeeeeEEE
Confidence 3448999999999999999998766555555443
No 378
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=73.53 E-value=17 Score=21.76 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=18.1
Q ss_pred EEEEcCCCCCCCeEEEEEE-EcC
Q psy1826 42 TLQIKYPQKRDSGIYECQV-STT 63 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~-~~~ 63 (169)
..........|+|.+.|.| .+.
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~ 66 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNE 66 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECT
T ss_pred EEEEecCCCCCCEEEEEEEcCCc
Confidence 5667788899999999999 554
No 379
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=70.94 E-value=19 Score=21.32 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=28.8
Q ss_pred cEEEEEEcCcee-EEEEcceeecCCCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 4 AQISWVRHRDIH-LLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 4 ~~V~W~k~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.+|+|+.++... ...........+..+.. . ..|.+..-...+...+.|.+.+.
T Consensus 30 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~------S~l~~~~~~~~~~~~~~C~~~~~ 83 (89)
T PF08205_consen 30 PQITWYLDGGPVVASNTTQSSSPDNGLFTV-S------STLTLTPTREDHGKTLTCRASHP 83 (89)
T ss_dssp EEEEEEETTCEECEEEEEEEEETTTTTEEE-E------EEEEEETTGGGTTEEEEEEEEET
T ss_pred eEEEEEECCCceeeeeeeeeeccCCCcceE-E------EEEEEEcChHHCCeEEEEEEECC
Confidence 478999887533 11111111122233331 1 15666665556677999999886
No 380
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=67.00 E-value=20 Score=22.36 Aligned_cols=20 Identities=30% Similarity=0.738 Sum_probs=14.5
Q ss_pred EEEEEEeecCCCCCCeeEEEE
Q psy1826 95 MNLTCVIKHSPEPPPAIYWLH 115 (169)
Q Consensus 95 ~~l~C~~~~~p~p~~~i~W~~ 115 (169)
+...|.+... +|+..|+|.-
T Consensus 23 ~VA~CiSa~G-rPpa~ItW~t 42 (98)
T cd05890 23 LVATCVSANG-KPPSVVRWDT 42 (98)
T ss_pred EEEEEEcCCC-cCCcEeEEEc
Confidence 4568875444 6889999974
No 381
>PHA03286 envelope glycoprotein E; Provisional
Probab=62.39 E-value=21 Score=28.78 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=25.8
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSV 74 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~v 74 (169)
+|.+.+++..++|.|.|.+.-.+....+...-+
T Consensus 308 nL~f~nA~~s~SGLYVfVl~yNGH~eAWtYtlv 340 (492)
T PHA03286 308 SFRLANAQPTDAGLYVVVALYNGRPLAWTYVYL 340 (492)
T ss_pred ceeecCCCcccCceEEEEEEECCcceeeeEEEE
Confidence 688999999999999999876665555555433
No 382
>PHA03283 envelope glycoprotein E; Provisional
Probab=58.77 E-value=26 Score=28.75 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCCCCeEEEEEEEcCCCceEEEE
Q psy1826 39 EDWTLQIKYPQKRDSGIYECQVSTTPPIGISMY 71 (169)
Q Consensus 39 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~ 71 (169)
+...|++.++...++|.|.|.+.-++....+..
T Consensus 313 ~~v~L~f~nap~~~SGLYVfVv~yNgHveAW~Y 345 (542)
T PHA03283 313 NRVDLLFKNAPASASGLYVFVLLYNGHPEAWTY 345 (542)
T ss_pred CCcceEeccCCcccCceEEEEEEECCeeeeeEE
Confidence 445899999999999999999866554444444
No 383
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=56.92 E-value=15 Score=29.70 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCCCeEEEEEEEcCCCceEEEE
Q psy1826 39 EDWTLQIKYPQKRDSGIYECQVSTTPPIGISMY 71 (169)
Q Consensus 39 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~ 71 (169)
+...|++.++...++|.|.|.+.-++....+..
T Consensus 267 ~~~~l~f~~a~~~~sGLYv~V~~~nghv~aW~y 299 (439)
T PF02480_consen 267 NGVDLQFTNAPESASGLYVFVVYYNGHVEAWTY 299 (439)
T ss_dssp TSSSEEESS--GGG-EEEEEEEEETTEEEEEEE
T ss_pred CCcceEecCCCcccCceEEEEEEECCeeeeeEE
Confidence 334799999999999999999866555444443
No 384
>PHA03281 envelope glycoprotein E; Provisional
Probab=47.59 E-value=50 Score=27.43 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEE
Q psy1826 40 DWTLQIKYPQKRDSGIYECQVSTTPPIGISMYL 72 (169)
Q Consensus 40 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l 72 (169)
...|.+.++...++|.|.|.+.-.+....+...
T Consensus 474 ~vdL~F~nApasaSGLYVfVl~yNGHVeAWtYt 506 (642)
T PHA03281 474 GSALKFVDAAESLSGLYVFIIHFNGHVEAVAYT 506 (642)
T ss_pred CcceEeccCCcccCceEEEEEEECCeeeeeEEE
Confidence 347899999999999999998766555555443
No 385
>PHA03282 envelope glycoprotein E; Provisional
Probab=47.31 E-value=59 Score=26.50 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 27 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
..|+... |+ +|.|.+++.+|+|.|.=.+...
T Consensus 116 ~~rvs~~--n~----tl~l~~a~~~DsG~Y~L~~~~~ 146 (540)
T PHA03282 116 PPRVAVV--NG----TLVLREARETDSGMYVLSVSRA 146 (540)
T ss_pred CcceeEe--cc----eEEEeeccccCCceEEEEecCC
Confidence 4666632 55 8999999999999998876443
No 386
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=38.52 E-value=1.3e+02 Score=20.73 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 39 EDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 39 ~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
...-|.|.+-+.+|+|.|.=++.-+
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l~ 146 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWLD 146 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEEC
Confidence 3446899999999999999887665
No 387
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=34.99 E-value=49 Score=21.29 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=20.2
Q ss_pred CCCeEEEecCCCCeEEEEEcCCCCCCCeEEEEEE
Q psy1826 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQV 60 (169)
Q Consensus 27 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 60 (169)
..+|..-..+- +|.|..-+.+|+|.|.-..
T Consensus 93 edgY~FhlEnL----sL~Il~SrkE~EGWYfmtl 122 (126)
T PF06214_consen 93 EDGYKFHLENL----SLEILESRKEDEGWYFMTL 122 (126)
T ss_dssp SSSEEEETTTT----EEEETT--GGG-EEEEEEE
T ss_pred ccccEEecccc----eeehhccccccCceEEEEe
Confidence 45677555555 9999999999999997543
No 388
>PHA03269 envelope glycoprotein C; Provisional
Probab=34.89 E-value=2.7e+02 Score=23.16 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=12.6
Q ss_pred EEEeecCCCCCCeeEEEECCEE
Q psy1826 98 TCVIKHSPEPPPAIYWLHNTEV 119 (169)
Q Consensus 98 ~C~~~~~p~p~~~i~W~~~~~~ 119 (169)
.|.+.=-|+-...+.|..+..+
T Consensus 449 VCtA~CVP~~~V~l~WlVgD~p 470 (566)
T PHA03269 449 VCLAKCVPRGVVHFNWWINDIP 470 (566)
T ss_pred EEecccccCCCceEEEEecCCC
Confidence 3665444332348999865544
No 389
>KOG3611|consensus
Probab=32.78 E-value=77 Score=27.58 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.4
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.+.+..++..|.|.|.|.+...
T Consensus 613 ~lll~~~q~~~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 613 GLVLLSVQKLDGGTYPCYADES 634 (737)
T ss_pred ceeEEEEeeccCcccccccccC
Confidence 5888999999999999998765
No 390
>PHA03290 envelope glycoprotein I; Provisional
Probab=29.60 E-value=2e+02 Score=22.42 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 39 EDWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 39 ~~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
...-|.|.+-..+|+|.|.-++.-.
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ld 151 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLD 151 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeC
Confidence 3446899999999999999988776
No 391
>PHA03240 envelope glycoprotein M; Provisional
Probab=27.31 E-value=1.2e+02 Score=22.01 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=16.0
Q ss_pred EEEEcCCCCCCCeEEEEEE
Q psy1826 42 TLQIKYPQKRDSGIYECQV 60 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~ 60 (169)
.|.|.+|..+|.|+|.-..
T Consensus 106 tL~i~~vn~sd~~nYcr~k 124 (258)
T PHA03240 106 TLIIAHLNLSDAGEYCRKK 124 (258)
T ss_pred eEEEEEEeecCcchhhhcc
Confidence 8999999999999995433
No 392
>KOG4597|consensus
Probab=26.71 E-value=67 Score=26.29 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEE
Q psy1826 40 DWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLS 73 (169)
Q Consensus 40 ~~~L~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~ 73 (169)
...|.|-+....|+|.|.|.+.+. +...+.+.+.
T Consensus 256 tcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~ 290 (560)
T KOG4597|consen 256 TCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCS 290 (560)
T ss_pred eeeEEEcchhhcCCCceeeccccccceeeccceee
Confidence 347999999999999999999886 4443333333
No 393
>COG5475 Uncharacterized small protein [Function unknown]
Probab=26.59 E-value=1.3e+02 Score=16.79 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=14.3
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy1826 42 TLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 42 ~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
.+.|...+.+ |.|.|+.-+.
T Consensus 19 ~Mtvs~~ss~--Gmy~C~Wf~g 38 (60)
T COG5475 19 RMTVSGYSSD--GMYECRWFDG 38 (60)
T ss_pred eEEEeccccC--CeEEEEEecC
Confidence 4566666554 9999998765
No 394
>COG2904 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.02 E-value=40 Score=22.09 Aligned_cols=23 Identities=22% Similarity=0.040 Sum_probs=15.1
Q ss_pred EEEEeeeceeeEEEeeeeecccc
Q psy1826 146 IVELTWKLEATYILAGTYTNSFN 168 (169)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~ 168 (169)
.+..+...-.....+..|+|||+
T Consensus 78 ~ip~dS~NlIESKSFKLYLNSfN 100 (137)
T COG2904 78 YIPADSPNLIESKSFKLYLNSFN 100 (137)
T ss_pred EecCCCccccccchhhhhhhhcc
Confidence 44444444455667889999997
No 395
>PHA03112 IL-18 binding protein; Provisional
Probab=24.30 E-value=1.2e+02 Score=20.34 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=20.8
Q ss_pred EcCCCcEEEEEEeecCCCCCCeeEEEECC
Q psy1826 89 INKGSTMNLTCVIKHSPEPPPAIYWLHNT 117 (169)
Q Consensus 89 v~~g~~~~l~C~~~~~p~p~~~i~W~~~~ 117 (169)
..+++++.|.|.+-+.-..--.+.|..++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 45688999999988642124689999654
No 396
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=23.88 E-value=95 Score=19.13 Aligned_cols=21 Identities=10% Similarity=0.335 Sum_probs=17.1
Q ss_pred ecCCcEEEcCCCcEEEEEEee
Q psy1826 82 IGGPDMYINKGSTMNLTCVIK 102 (169)
Q Consensus 82 ~~~~~~~v~~g~~~~l~C~~~ 102 (169)
..|+...|..|+.+.+.|+..
T Consensus 8 v~P~~~vV~~G~Sv~VNCSts 28 (91)
T PF03921_consen 8 VSPEEPVVPPGGSVWVNCSTS 28 (91)
T ss_dssp EESSEEEEETTEEEEEEEEES
T ss_pred EECCccEECCCCCEEEEEcCC
Confidence 446677889999999999874
No 397
>PHA03292 envelope glycoprotein I; Provisional
Probab=21.76 E-value=3.1e+02 Score=21.90 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCCCeEEEEEEEcC
Q psy1826 40 DWTLQIKYPQKRDSGIYECQVSTT 63 (169)
Q Consensus 40 ~~~L~I~~v~~~D~G~Y~C~~~~~ 63 (169)
..-|.|.+-+..|+|.|.-++.-+
T Consensus 127 ~vLL~I~~P~~~DSGiY~LRV~Ld 150 (413)
T PHA03292 127 NVLLNITGPQPADSGAYILRVKLD 150 (413)
T ss_pred ceEEEeCCCCcccceeEEEEEEeC
Confidence 347899999999999999988776
Done!