RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1826
(169 letters)
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 85.7 bits (212), Expect = 2e-22
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 2/72 (2%)
Query: 6 ISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP 65
+ W L D R + +E ++ + D G Y C + T P
Sbjct: 38 LQWSN-PAQQTLYFDDKKALRDNRIELVRASWHE-LSISVSDVSLSDEGQYTCSLFTMPV 95
Query: 66 IGISMYLSVVEP 77
YL+V+
Sbjct: 96 KTSKAYLTVLGV 107
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 85.6 bits (211), Expect = 4e-22
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63
+ + W L D R + +E ++ I D G Y C + T
Sbjct: 68 SSLQWSN-PAQQTLYFGEKRALRDNRIQLVTSTPHE-LSISISNVALADEGEYTCSIFTM 125
Query: 64 PPIGISMYLSVVEP 77
P ++V+
Sbjct: 126 PVRTAKSLVTVLGI 139
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 72.2 bits (177), Expect = 3e-17
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 6 ISWVRHRDIHLLTVSGYTYTSDQRFSCIH-------KPQNEDWTLQIKYPQKRDSGIYEC 58
+ W ++ L V Y ++F +H ++ WTL++ Q +D G+Y+C
Sbjct: 31 VFWQDQENLVLNEV----YLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQC 86
Query: 59 QVSTTPPIG-ISMYLSVVE 76
+ P G I ++ E
Sbjct: 87 IIHHKKPTGMIRIHQMNSE 105
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 71.9 bits (176), Expect = 5e-17
Identities = 9/79 (11%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63
+ + W+ + ++ Y + ++ +H N ++ + +D G+Y+C +
Sbjct: 31 SSLQWLTPSG-FTIFLNEYPVLKNSKYQLLHHSAN-QLSITVPNVTLQDEGVYKCLHYSD 88
Query: 64 PPIGISMYLSVVEPITQII 82
+ + V+ +
Sbjct: 89 SVSTKEVKVIVLATMKGEF 107
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 70.8 bits (173), Expect = 7e-16
Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 9/119 (7%)
Query: 5 QISWVR----HRDIHLLTVSGYTYTSDQRFSCIHKPQNE--DWTLQIKYPQKRDSGIYEC 58
++SW + + + + + F + L + G Y C
Sbjct: 25 EVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLC 84
Query: 59 QVSTTPP-IGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
++ + +LSVV+P+T + S + +TC + P P + WL
Sbjct: 85 RMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAF--PHPHVQWLMP 141
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 67.2 bits (164), Expect = 4e-14
Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 12/114 (10%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
ISW L + QR S + + TL I D+GIY+C V+
Sbjct: 34 DISWFSPNGEKLSP-------NQQRISVVWNDDD-SSTLTIYNANIDDAGIYKCVVTAED 85
Query: 65 PIGISMY--LSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ + + + +G + C + PP I W H
Sbjct: 86 GTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV--VSSLPPTIIWKHK 137
Score = 51.0 bits (122), Expect = 2e-08
Identities = 26/118 (22%), Positives = 39/118 (33%), Gaps = 21/118 (17%)
Query: 5 QISWVR-HRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63
I W RD+ L D RF + LQI+ +K D G Y C+
Sbjct: 131 TIIWKHKGRDVIL--------KKDVRFI-----VLSNNYLQIRGIKKTDEGTYRCEGRIL 177
Query: 64 PPIGISM---YLSVVEP--ITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
I+ + V P + + N G ++ L C P P + W +
Sbjct: 178 ARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGF--PEPTMSWTKD 233
Score = 27.5 bits (61), Expect = 2.0
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 25 TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+++ H ++ L I+ K D Y C
Sbjct: 238 ENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAE 274
Score = 27.5 bits (61), Expect = 2.2
Identities = 5/32 (15%), Positives = 8/32 (25%), Gaps = 1/32 (3%)
Query: 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
I+ G + C + I W
Sbjct: 10 SQGEISVGESKFFLCQVAGDA-KDKDISWFSP 40
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 65.2 bits (159), Expect = 3e-13
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+I+W R D T + + D R + + +L IK + DSG Y+C+ ++
Sbjct: 31 EITWKRAVDG--FTFTEGDKSLDGRIEVKGQHGSS--SLHIKDVKLSDSGRYDCEAASRI 86
Query: 65 -PIGISMYLSVVEPITQIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119
SMYL + + I Y +G+ +N++C +K PP +I+W + V
Sbjct: 87 GGHQKSMYLDIEYA-PKFISNQTIYYSWEGNPINISCDVKS--NPPASIHWRRDKLV 140
Score = 32.1 bits (73), Expect = 0.068
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVVEP 77
L+I D G Y C + IG L++ +
Sbjct: 159 ILEIAPTSDNDFGRYNCTATN--HIGTRFQEYILALADV 195
Score = 26.7 bits (59), Expect = 4.1
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 80 QIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123
II + + + L C + P P I W +
Sbjct: 3 HIIQLKNETTYENGQVTLVCDAEGE--PIPEITWKRAVDGFTFT 44
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 62.7 bits (152), Expect = 5e-13
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 15/118 (12%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSC------IHKPQNEDWTLQIKYPQKRDSGIYEC 58
Q W I +L G T ++ L IK + DS Y C
Sbjct: 26 QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYIC 85
Query: 59 QVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+V + + D ++ +G ++ LT + P P++
Sbjct: 86 EVEDQKEEVQLLVFGLTAN-------SDTHLLQGQSLTLTL--ESPPGSSPSVQCRSP 134
Score = 30.7 bits (69), Expect = 0.14
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 34 HKPQNEDWTLQIKYPQKRDSGIYECQVS-TTPPIGISMYLSVV 75
K TL + + +DSG + C V + + + V+
Sbjct: 136 GKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178
Score = 28.0 bits (62), Expect = 1.1
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 16/83 (19%)
Query: 91 KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELT 150
KG T+ LTC +W ++ ++ L ++ S K L + +
Sbjct: 9 KGDTVELTCTASQK--KSIQFHWKNSNQIKIL-----GNQGSFLTKGPSKLNDRADSRRS 61
Query: 151 WKLEATYIL---------AGTYT 164
+ + L + TY
Sbjct: 62 LWDQGNFPLIIKNLKIEDSDTYI 84
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 59.5 bits (143), Expect = 2e-11
Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 14/125 (11%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQ---------RFSCIHKPQNEDWTLQIKYPQKRDSGI 55
++ W+ +D + Y S+ R + + D +L ++ QK D GI
Sbjct: 39 RVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGI 98
Query: 56 YECQVSTTP-PIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPP-AIYW 113
Y C++ + + + + + D+ + G T + C I+ + E + W
Sbjct: 99 YTCEIRLKNESMVMKKPVELWVLPEEP---RDLRVRVGDTTQMRCSIQSTEEKRVTKVNW 155
Query: 114 LHNTE 118
+ ++
Sbjct: 156 MFSSG 160
Score = 40.6 bits (94), Expect = 1e-04
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 14/98 (14%)
Query: 2 SLAQISWVRHRDIHLLTVSGYTYTSDQ-------------RFSCIHKPQNEDWTLQIKYP 48
+ +++W+ H + +Y S+ R D +++++
Sbjct: 149 RVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTV 208
Query: 49 QKRDSGIYECQVSTTP-PIGISMYLSVVEPITQIIGGP 85
++ D GIY C + ++ L VV+ Q P
Sbjct: 209 KESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISP 246
Score = 27.9 bits (61), Expect = 1.5
Identities = 6/34 (17%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 84 GPDMYINKGSTMNLTCVIKHS-PEPPPAIYWLHN 116
P + ++ G ++ + CV++ + + + WL +
Sbjct: 12 SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFS 45
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 59.9 bits (145), Expect = 2e-11
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVVEPITQIIGGP-DMYINKGSTMNL 97
L I DSG Y C V+ S L+V+ P + P ++Y + +
Sbjct: 276 NLLISNVTDDDSGTYTCVVTY--KNENISASAELTVLVP-PWFLNHPSNLYAYESMDIEF 332
Query: 98 TCVIKHSPEPPPAIYWLHN 116
C + +P P + W+ N
Sbjct: 333 ECAVSG--KPVPTVNWMKN 349
Score = 48.3 bits (115), Expect = 2e-07
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 42 TLQIKYPQKRDSGIYECQVST--TPPIGISMYLSVVE------PITQIIGGPDMYINKGS 93
LQI Q DSG+Y C + G + ++ + + ++ +G
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGK 237
Query: 94 TMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSS 133
L C + S PPP+ WL EV QL + S
Sbjct: 238 DAVLECCV--SGYPPPSFTWLRGEEVIQLRSKKYSLLGGS 275
Score = 40.6 bits (95), Expect = 9e-05
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGI---SMYLSVVEPITQIIGGPDMYINKGSTMNLT 98
+ K D G+Y+C+ S I + + V P+ + + G T+ L
Sbjct: 83 NILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLK 142
Query: 99 CVIKHSPEPPPAIYWLHN 116
C + +P P I+W N
Sbjct: 143 CEV--IGDPMPTIHWQKN 158
Score = 36.0 bits (83), Expect = 0.003
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 39 EDWTLQIKYPQKRDSGIYECQVSTTPPIGI---SMYLSVVEP 77
L+I K D G Y+C G S L V +P
Sbjct: 363 GGSNLRILGVVKSDEGFYQCVAEN--EAGNAQSSAQLIVPKP 402
Score = 30.2 bits (68), Expect = 0.28
Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 69 SMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ + + D +G + L C + P I W +
Sbjct: 13 HHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDR-GVPVIKWKKD 59
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 59.0 bits (142), Expect = 3e-11
Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 10/154 (6%)
Query: 1 MSLAQISWVRH----RDIHLLTVSGYTYTSDQRFSCIHKPQN---EDWTLQIKYPQKRDS 53
++Q++W RH G +Y+ +R + + +L++ + D
Sbjct: 32 THVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDE 91
Query: 54 GIYECQVSTTP--PIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAI 111
G Y C T P + ++L V+ + + CV PP I
Sbjct: 92 GNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGG-RPPAQI 150
Query: 112 YWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVS 145
W + S + + +L S
Sbjct: 151 TWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPS 184
Score = 47.0 bits (111), Expect = 6e-07
Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 13/119 (10%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS-- 61
AQI+W H D+ + + + + D C+V
Sbjct: 148 AQITW--HSDLGGMPNTSQVPGFL------SGTVTVTSLWILVPSSQVDGKNVTCKVEHE 199
Query: 62 -TTPPIGISMYLSVVEPIT-QIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTE 118
P +++ L+V P I G + + + LTC + +P P W
Sbjct: 200 SFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNP-EPTGYNWSTTMG 257
Score = 27.0 bits (59), Expect = 3.2
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 37 QNEDWTLQIKYPQKRDSGIYECQVS 61
+ L I+ K + C V+
Sbjct: 264 VAQGAQLLIRPVDKPINTTLICNVT 288
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 59.4 bits (144), Expect = 4e-11
Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 20/117 (17%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63
Q+SW L + Y S+ N ++ I D G Y+C+ S
Sbjct: 414 FQVSW-HKDKRELRSGKKYKIMSE----------NFLTSIHILNVDSADIGEYQCKASN- 461
Query: 64 PPIG---ISMYLSVVEPITQIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+G +++ P + + D+ G + L I+ P ++ W +
Sbjct: 462 -DVGSDTCVGSITLKAP-PRFVKKLSDISTVVGEEVQLQATIEG--AEPISVAWFKD 514
Score = 53.3 bits (128), Expect = 5e-09
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGI---SMYLSVVEPITQIIGGP-DMYINKGSTMNL 97
L++ DSG Y C+ G S L V EP P + KG+ ++L
Sbjct: 348 VLEMYNLSVEDSGDYTCEAHN--AAGSASSSTSLKVKEP-PVFRKKPHPVETLKGADVHL 404
Query: 98 TCVIKHSPEPPPAIYWLHNTEV 119
C ++ + PP + W +
Sbjct: 405 ECELQGT--PPFQVSWHKDKRE 424
Score = 47.9 bits (114), Expect = 3e-07
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 21/118 (17%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
Q+SW ++D LL ++ + S IH TLQI + G Y C S
Sbjct: 132 QVSW--YKDGELLKDD-----ANLQTSFIH----NVATLQILQTDQSHVGQYNCSASN-- 178
Query: 65 PIG---ISMYLSVVEPIT--QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
P+G S L++ E P + + G + C + + P I W +
Sbjct: 179 PLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHV--TGTAPIKITWAKD 234
Score = 46.7 bits (111), Expect = 8e-07
Identities = 22/115 (19%), Positives = 33/115 (28%), Gaps = 17/115 (14%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS-TT 63
+I+W + + Y T TL + K D+G Y C S
Sbjct: 228 KITW-AKDNREIRPGGNYKMTLV----------ENTATLTVLKVTKGDAGQYTCYASNVA 276
Query: 64 PPIGISMYLSVVEPITQIIGGP--DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
S L V EP + I + + C I P + W +
Sbjct: 277 GKDSCSAQLGVQEP-PRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKD 328
Score = 45.2 bits (107), Expect = 3e-06
Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 21/118 (17%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+I+W +++ S + K +L I D G Y C+
Sbjct: 36 RIAW--YKE-------HTKLRSAPAYKMQFKNNV--ASLVINKVDHSDVGEYTCKAEN-- 82
Query: 65 PIGI---SMYLSVVEPIT--QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+G S L + E D++ G + C I + P + W +
Sbjct: 83 SVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRI--NGSEPLQVSWYKD 138
Score = 35.9 bits (83), Expect = 0.004
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGI---SMYLSVVE 76
TLQ + ++G Y CQ+ G LSV+E
Sbjct: 535 TLQFSRAEPANAGKYTCQIKN--EAGTQECFATLSVLE 570
Score = 28.2 bits (63), Expect = 1.3
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 75 VEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+EP I + G + L C + + P I W
Sbjct: 3 MEPPYFIEPLEHVEAAIGEPITLQCKVDGT--PEIRIAWYKE 42
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 57.9 bits (140), Expect = 4e-11
Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 12/114 (10%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
ISW + L+ + + + ++ TL I D+GIY+C V+
Sbjct: 34 DISWFS-PNGEKLSPNQQRIS-------VVWNDDDSSTLTIYNANIDDAGIYKCVVTAED 85
Query: 65 --PIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
++ + + + + +G + C + S PP I W H
Sbjct: 86 GTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS--LPPTIIWKHK 137
Score = 30.9 bits (70), Expect = 0.13
Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 14/58 (24%)
Query: 5 QISWVRH-RDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
I W RD+ L D RF + LQI+ +K D G Y C+
Sbjct: 131 TIIWKHKGRDVIL--------KKDVRFI-----VLSNNYLQIRGIKKTDEGTYRCEGR 175
Score = 26.3 bits (58), Expect = 4.0
Identities = 5/31 (16%), Positives = 8/31 (25%), Gaps = 1/31 (3%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
I+ G + C + I W
Sbjct: 11 QGEISVGESKFFLCQVAGDA-KDKDISWFSP 40
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 59.4 bits (143), Expect = 4e-11
Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 15/125 (12%)
Query: 5 QISWVRHRDIHLLTVSGYTYT------SDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYEC 58
Q W I +L G T +D+ S ++ L IK + DS Y C
Sbjct: 25 QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYIC 84
Query: 59 QVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTE 118
+V + + D ++ +G ++ LT P P++
Sbjct: 85 EVEDQKEEVQLLVFGLTAN-------SDTHLLQGQSLTLTLES--PPGSSPSVQCRSPRG 135
Query: 119 VSQLN 123
+
Sbjct: 136 KNIQG 140
Score = 38.2 bits (88), Expect = 7e-04
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 14/90 (15%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTP-PIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCV 100
TL PQ SG + + + L V+ NLTC
Sbjct: 258 TLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT-------------QLQKNLTCE 304
Query: 101 IKHSPEPPPAIYWLHNTEVSQLNLMQRESE 130
+ P + + ++++ ++
Sbjct: 305 VWGPTSPKLMLSLKLENKEAKVSKREKAVW 334
Score = 34.0 bits (77), Expect = 0.014
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 7/84 (8%)
Query: 34 HKPQNEDWTLQIKYPQKRDSGIYECQVS-TTPPIGISMYLSVVEPITQIIGGPDMYINKG 92
K TL + + +DSG + C V + + + V+ +Y +G
Sbjct: 135 GKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASS---IVYKKEG 191
Query: 93 STMNLTCVIKHSPE---PPPAIYW 113
+ + + + E ++W
Sbjct: 192 EQVEFSFPLAFTVEKLTGSGELWW 215
Score = 26.3 bits (57), Expect = 6.4
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 91 KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQR 127
KG T+ LTC +W ++ ++ L
Sbjct: 8 KGDTVELTCTASQKKSIQ--FHWKNSNQIKILGNQGS 42
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 57.8 bits (140), Expect = 9e-11
Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 9/87 (10%)
Query: 37 QNEDWTLQIKYPQKRDSGIYECQVSTTPPIGI---SMYLSVVEPITQIIGGP-DMYINKG 92
L++ DSG Y C+ G S L V EP P + KG
Sbjct: 151 VESVAVLEMYNLSVEDSGDYTCEAHN--AAGSASSSTSLKVKEP-PVFRKKPHPVETLKG 207
Query: 93 STMNLTCVIKHSPEPPPAIYWLHNTEV 119
+ ++L C ++ + PP + W +
Sbjct: 208 ADVHLECELQGT--PPFQVSWHKDKRE 232
Score = 45.5 bits (108), Expect = 2e-06
Identities = 19/79 (24%), Positives = 25/79 (31%), Gaps = 8/79 (10%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVVEPITQIIGGPDMY-INKGSTMNL 97
TL + K D+G Y C S G S L V EP I + +
Sbjct: 62 TLTVLKVTKGDAGQYTCYASN--VAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRY 119
Query: 98 TCVIKHSPEPPPAIYWLHN 116
C I P + W +
Sbjct: 120 ECKI--GGSPEIKVLWYKD 136
Score = 31.2 bits (71), Expect = 0.11
Identities = 6/38 (15%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
P + + G + C + + P I W +
Sbjct: 7 FFDLKPVSVDLALGESGTFKCHV--TGTAPIKITWAKD 42
Score = 30.9 bits (70), Expect = 0.15
Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 25 TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGI---SMYLSV 74
S +++ + +N ++ I D G Y+C+ S +G +++
Sbjct: 234 RSGKKYKIM--SENFLTSIHILNVDSADIGEYQCKASN--DVGSYTCVGSITL 282
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 58.4 bits (141), Expect = 9e-11
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 38 NEDWTLQIKYPQKRDSGIYECQVSTTPPIG----ISMYLSVVEPITQIIGGP-DMYINKG 92
N + TL + + D+ Y C + + + L V+ I P D G
Sbjct: 517 NGNRTLTLFNVTRNDARAYVCGIQN--SVSANRSDPVTLDVLYGPDTPIISPPDSSYLSG 574
Query: 93 STMNLTCVIKHSPEPPPAIYWLHN 116
+ +NL+C + P P W N
Sbjct: 575 ANLNLSCHSASN--PSPQYSWRIN 596
Score = 50.7 bits (121), Expect = 4e-08
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 34 HKPQNEDWTLQIKYPQKRDSGIYECQVSTT--PPIGISMYLSVVE-PITQIIGGPDMYIN 90
+ N++ TL + + D G YEC + + L+V+ P I Y
Sbjct: 335 LQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYR 394
Query: 91 KGSTMNLTCVIKHSPEPPPAIYWLHN 116
G ++L+C + PP WL +
Sbjct: 395 PGVNLSLSCHA--ASNPPAQYSWLID 418
Score = 49.2 bits (117), Expect = 1e-07
Identities = 12/79 (15%), Positives = 20/79 (25%), Gaps = 7/79 (8%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVV----EPITQIIGGPDMYINKGSTMNL 97
+L I+ + D+G Y V + + P I + +
Sbjct: 72 SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAF 131
Query: 98 TCVIKHSPEPPPAIYWLHN 116
TC W N
Sbjct: 132 TC---EPETQDATYLWWVN 147
Score = 47.6 bits (113), Expect = 5e-07
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISM----YLSVVEPITQI-IGGPDMYINKGSTMN 96
TL + + D+ Y+C+ P+ L+V+ I + G +N
Sbjct: 165 TLTLFNVTRNDTASYKCETQN--PVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLN 222
Query: 97 LTCVIKHSPEPPPAIYWLHNTEVSQLN 123
L+C + PP W N Q
Sbjct: 223 LSCHA--ASNPPAQYSWFVNGTFQQST 247
Score = 41.9 bits (98), Expect = 4e-05
Identities = 15/87 (17%), Positives = 21/87 (24%), Gaps = 8/87 (9%)
Query: 35 KPQNEDWTLQIKYPQKRDSGIYECQVS---TTPPIGISMYLSVVEPITQIIGGP--DMYI 89
Q L I +SG Y CQ T ++V + +
Sbjct: 242 TFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPV 301
Query: 90 NKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ LTC W N
Sbjct: 302 EDEDAVALTCE---PEIQNTTYLWWVN 325
Score = 41.5 bits (97), Expect = 6e-05
Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 7/104 (6%)
Query: 35 KPQNEDWTLQIKYPQKRDSGIYECQVSTTP-PIGISMYLSVVE----PITQIIGGPDMYI 89
Q L I +++SG+Y CQ + + + ++ P I +
Sbjct: 420 NIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPV 479
Query: 90 NKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSS 133
+ TC + ++W++ + +Q + + +
Sbjct: 480 EDKDAVAFTCEPEAQ--NTTYLWWVNGQSLPVSPRLQLSNGNRT 521
Score = 31.8 bits (72), Expect = 0.090
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 35 KPQNEDWTLQIKYPQKRDSGIYECQVSTT 63
PQ L I ++G Y C VS
Sbjct: 598 IPQQHTQVLFIAKITPNNNGTYACFVSNL 626
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 56.1 bits (135), Expect = 1e-10
Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 9/122 (7%)
Query: 2 SLAQISWVRHRDIHLLT--VSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQ 59
S +++W+ + +L +G + F + L+I K D G Y +
Sbjct: 28 SYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMR 87
Query: 60 VSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119
+ + + V E +++ P +Y S LTC + + E
Sbjct: 88 MLHETEDQWKITMEVYEMVSK----PMIYWE-CSNATLTCEVLEG--TDVELKLYQGKEH 140
Query: 120 SQ 121
+
Sbjct: 141 LR 142
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 57.2 bits (138), Expect = 2e-10
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 17/113 (15%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
I W R D + + S+ L+I Q+ D+G YEC +
Sbjct: 236 TILW-RRADGKPIARKARRHKSNG-------------ILEIPNFQQEDAGSYECVAENSR 281
Query: 65 -PIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
L+ + D+++ ++ C + P P WL N
Sbjct: 282 GKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKA--NGRPKPTYRWLKN 332
Score = 41.7 bits (98), Expect = 4e-05
Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 27/125 (21%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS-- 61
+W+ + ++RF E L I +K D G Y C V+
Sbjct: 133 LSYAWIFNEYPSY--------QDNRRFV-----SQETGNLYIAKVEKSDVGNYTCVVTNT 179
Query: 62 --TTPPIGISMYLSV--------VEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAI 111
+G L + EP ++ + KG+T+ L C P P I
Sbjct: 180 VTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFA--LGNPVPTI 237
Query: 112 YWLHN 116
W
Sbjct: 238 LWRRA 242
Score = 36.4 bits (84), Expect = 0.003
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 9/81 (11%)
Query: 42 TLQIKYP-QKRDSGIYECQVSTTPPIGI----SMYLSVVEPITQIIGGP-DMYINKGSTM 95
+L I P + +D+G Y+C + G L + + +G M
Sbjct: 63 SLLINNPNKTQDAGTYQCIATN--SFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGM 120
Query: 96 NLTCVIKHSPEPPPAIYWLHN 116
L C + W+ N
Sbjct: 121 VLLCGPPPHS-GELSYAWIFN 140
Score = 29.4 bits (66), Expect = 0.55
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVV 75
TL I D+G+Y+C G S LSV+
Sbjct: 348 TLNITIVNLSDAGMYQCVAEN--KHGVIFSSAELSVI 382
Score = 26.3 bits (58), Expect = 6.5
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 91 KGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ + L+C +K P P I W N
Sbjct: 22 EEKKVKLSCEVK--GNPKPHIRWKLN 45
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 56.9 bits (137), Expect = 2e-10
Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 12/136 (8%)
Query: 37 QNEDWTLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVVE-----PITQIIGGPDMY 88
+++ W+L ++ D G Y C V G + L V+E PI Q +
Sbjct: 176 RHQQWSLVMESVVPSDRGNYTCVVEN--KFGSIRQTYTLDVLERSPHRPILQAGLPANQT 233
Query: 89 INKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVE 148
GS + C + P I WL + EV+ + + + +K + +E
Sbjct: 234 AVLGSDVEFHCKVYSD--AQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE 291
Query: 149 LTWKLEATYILAGTYT 164
+ T+ AG YT
Sbjct: 292 VLSLHNVTFEDAGEYT 307
Score = 44.6 bits (105), Expect = 5e-06
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 5 QISWVRHRDI--HLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62
I W++H ++ + G Y + + + + E L + D+G Y C
Sbjct: 253 HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGN 312
Query: 63 TPPIGI---SMYLSVVEPITQII 82
+ IG S +L V+ +++
Sbjct: 313 S--IGFSHHSAWLVVLPAEEELV 333
Score = 40.4 bits (94), Expect = 1e-04
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 28/103 (27%)
Query: 40 DWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPIT-------------------- 79
LQ+ DSG Y C+ T + + V + +
Sbjct: 60 PQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGA 119
Query: 80 ------QIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ + + + +T+ C + P P+I WL N
Sbjct: 120 PYWTRPERMDKKLLAVPAANTVRFRCPA--AGNPTPSISWLKN 160
Score = 30.0 bits (67), Expect = 0.39
Identities = 5/31 (16%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ G + L+C P W+ +
Sbjct: 17 QLVFGSGDAVELSCPPPGG-GPMGPTVWVKD 46
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 54.1 bits (130), Expect = 3e-10
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 2 SLAQISWVRHRDIHLLTV----SGYTYTSDQRFSCI---HKPQNEDWTLQIKYPQKRDSG 54
++Q++W RH + + V G +Y+ +R + + + +L++ + D G
Sbjct: 33 HVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEG 92
Query: 55 IYECQVSTTP--PIGISMYLSVVEP 77
Y C T P + ++L V+
Sbjct: 93 NYTCLFVTFPQGSRSVDIWLRVLAK 117
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 56.5 bits (136), Expect = 3e-10
Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 12/113 (10%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
W + + T Q + + TL IK DSG Y C V+ +
Sbjct: 243 SFRWYKFIE---------GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV 293
Query: 65 -PIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ L+V P++ I P ++ G TC P + W+ +
Sbjct: 294 GGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTG--NPIKTVSWMKD 344
Score = 44.9 bits (106), Expect = 3e-06
Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 13/130 (10%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+I W+R + V G S + ED Y Q+ + +Y C
Sbjct: 35 EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAED------YRQEVHAQVYACLARN-- 86
Query: 65 PIGI----SMYLSVVEPITQIIGGPDMYINKGSTMNLTCVI-KHSPEPPPAIYWLHNTEV 119
G +++ V ++ +G++ + C+I + + W + E
Sbjct: 87 QFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEE 146
Query: 120 SQLNLMQRES 129
+ + +
Sbjct: 147 NYFPGAEYDG 156
Score = 39.9 bits (93), Expect = 2e-04
Identities = 21/153 (13%), Positives = 46/153 (30%), Gaps = 23/153 (15%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDS-GIYECQV--- 60
+SW + + + D ++ L I+ D Y+C+
Sbjct: 137 VVSWHTDEEENYFPGA----EYDGKYL-----VLPSGELHIREVGPEDGYKSYQCRTKHR 187
Query: 61 --------STTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIY 112
+T + I+ +S P T + + + T++L C P P+
Sbjct: 188 LTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPA--QGFPAPSFR 245
Query: 113 WLHNTEVSQLNLMQRESESSSFVKRLVVLLSVS 145
W E + ++ V +++
Sbjct: 246 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 278
Score = 28.8 bits (64), Expect = 0.80
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 42 TLQIKYPQKRDSGIYECQVS 61
L+I+ +K D G+Y+C V
Sbjct: 354 VLRIESVKKEDKGMYQCFVR 373
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 56.5 bits (136), Expect = 4e-10
Identities = 23/116 (19%), Positives = 37/116 (31%), Gaps = 14/116 (12%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63
+ISW + Y + + L I D G+Y+C +
Sbjct: 459 PEISW-ELDGKKIANNDRYQVGQY-----VTVNGDVVSYLNITSVHANDGGLYKCIAKS- 511
Query: 64 PPIG---ISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+G S L+V I I G T+ +TC + P +I W +
Sbjct: 512 -KVGVAEHSAKLNVYGL-PYIRQMEKKAIVAGETLIVTCPVAGY--PIDSIVWERD 563
Score = 56.1 bits (135), Expect = 5e-10
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 12/113 (10%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS-TT 63
W ++ I T +D + + TL IK DSG Y C V+ +
Sbjct: 279 VFRW--YKFIEGTTRKQAVVLND-------RVKQVSGTLIIKDAVVEDSGKYLCVVNNSV 329
Query: 64 PPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ L+V P++ I P ++ G TC + P + W+ +
Sbjct: 330 GGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQY--TGNPIKTVSWMKD 380
Score = 53.8 bits (129), Expect = 3e-09
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 9/88 (10%)
Query: 33 IHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVVEPITQIIGGP-DMY 88
+ L I+ + +G + C G + L+V P + I P D
Sbjct: 669 TSRVGRRGSVLTIEAVEASHAGNFTCHARN--LAGHQQFTTPLNVYVP-PRWILEPTDKA 725
Query: 89 INKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+GS + C P P + W
Sbjct: 726 FAQGSDAKVECKADGF--PKPQVTWKKA 751
Score = 50.3 bits (120), Expect = 5e-08
Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 9/115 (7%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+I W+R + V G S + ED Y Q+ + +Y C
Sbjct: 70 EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAED------YRQEVHAQVYACLARNQF 123
Query: 65 PIGIS--MYLSVVEPITQIIGGPDMYINKGSTMNLTC-VIKHSPEPPPAIYWLHN 116
IS +++ V ++ +G++ + C + + + W +
Sbjct: 124 GSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD 178
Score = 48.8 bits (116), Expect = 2e-07
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 5/82 (6%)
Query: 39 EDWTLQIKYPQKR-DSGIYECQVSTTPPIGI--SMYLSVVE-PITQIIGGPDMYINKGST 94
+ TL I+ ++ D Y C S+ + V+ P + G
Sbjct: 577 PNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQY 636
Query: 95 MNLTCVIKHSPEPPPAIYWLHN 116
+ L C + P I W +
Sbjct: 637 LTLHCSVPGGD-LPLNIDWTLD 657
Score = 45.7 bits (108), Expect = 2e-06
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 42 TLQIKYPQKRDSGIYECQVS---TTPPIGISMYLSVVEPITQIIGGP-DMYINKGSTMNL 97
L+I+ +K D G+Y+C V + + L I + + G ++ L
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 449
Query: 98 TCVIKHSPEPPPAIYWLHNTE 118
CV + P P I W + +
Sbjct: 450 KCVAGGN--PTPEISWELDGK 468
Score = 41.1 bits (96), Expect = 7e-05
Identities = 19/154 (12%), Positives = 40/154 (25%), Gaps = 24/154 (15%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDS-GIYECQVS-- 61
+SW + + D ++ L I+ D Y+C+
Sbjct: 172 VVSWHTDEEENYFP----GAEYDGKYL-----VLPSGELHIREVGPEDGYKSYQCRTKHR 222
Query: 62 --TTPPIGISMYLSVVE--------PITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAI 111
+ + V+ + + + STM L C + P P
Sbjct: 223 LTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGY--PVPVF 280
Query: 112 YWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVS 145
W E + ++ V +++
Sbjct: 281 RWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 314
Score = 40.7 bits (95), Expect = 1e-04
Identities = 5/78 (6%), Positives = 25/78 (32%), Gaps = 6/78 (7%)
Query: 43 LQIKYPQKRDSGIYECQVS---TTPPIGISMYLSVVEPITQIIGGPD-MYINKGSTMNLT 98
+ + + + ++ + + + + + + + + + + +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 99 CVIKHSPEPPPAIYWLHN 116
C + P P I W+ +
Sbjct: 61 CKASGN--PMPEIIWIRS 76
Score = 33.0 bits (75), Expect = 0.035
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 8/58 (13%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62
Q++W + + + E+ TL + QK + G Y C+
Sbjct: 745 QVTW--KKAVGDTPGEYKDLKKSDNI------RVEEGTLHVDNIQKTNEGYYLCEAIN 794
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 54.9 bits (132), Expect = 5e-10
Identities = 21/129 (16%), Positives = 32/129 (24%), Gaps = 11/129 (8%)
Query: 37 QNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGP-DMYINKGSTM 95
+ +I P+ DSG Y C + + V I G N+G
Sbjct: 52 NASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAA-PDITGHKRSENKNEGQDA 110
Query: 96 NLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEA 155
+ C P P W + R ++ + EL
Sbjct: 111 MMYCKS--VGYPHPEWMWRKKENGVFEEISNSSG-------RFFIINKENYTELNIVNLQ 161
Query: 156 TYILAGTYT 164
G Y
Sbjct: 162 ITEDPGEYE 170
Score = 35.2 bits (81), Expect = 0.004
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 75 VEPITQIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
EP +I+ + + + L C + S YW N
Sbjct: 2 NEP--RIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKN 42
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 55.2 bits (132), Expect = 5e-10
Identities = 22/166 (13%), Positives = 43/166 (25%), Gaps = 21/166 (12%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63
+S G + D + I +G+ C+
Sbjct: 38 LNVSLCARYPEKRFVPDGNRISWDSK-----------KGFTIPSYMISYAGMVFCEAKIN 86
Query: 64 PPIGISMYLSVVE---PITQIIGGP--DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTE 118
S+ VV I ++ P + ++ G + L C + W + +
Sbjct: 87 DESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSS 146
Query: 119 VSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAGTYT 164
Q + + + LS ++ T G YT
Sbjct: 147 KHQHKKLVNRDLKTQSGSEMKKFLSTLTID-----GVTRSDQGLYT 187
Score = 32.1 bits (72), Expect = 0.051
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 8/76 (10%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+W H D + + + TL I + D G+Y C S+
Sbjct: 138 DFNWEYPSSKHQ---HKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS-- 192
Query: 65 PIGI---SMYLSVVEP 77
+ S ++ V E
Sbjct: 193 GLMTKKNSTFVRVHED 208
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 54.1 bits (130), Expect = 8e-10
Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
++ W RD +L ++ T T L+I Q D+G Y+C V
Sbjct: 34 EVHW--LRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGH 91
Query: 65 PIGIS--MYLSVVEPITQIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+S Y+ + + P D + + NL+C + PE P + WL +
Sbjct: 92 QTFVSQPGYVGLEGL-PYFLEEPEDRTVAANTPFNLSCQAQGPPE-PVDLLWLQD 144
Score = 30.3 bits (68), Expect = 0.23
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+G P ++ +G T L C + PP ++WL +
Sbjct: 4 PFVGNPGNITGARGLTGTLRCQL-QVQGEPPEVHWLRD 40
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 55.2 bits (133), Expect = 9e-10
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 18/120 (15%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+I+W +D + S S+ R Q LQI+ ++ D G YEC + +
Sbjct: 139 EITW--FKDFLPVDPS----ASNGRIK-----QLRSGALQIESSEETDQGKYECVATNSA 187
Query: 65 PIGISM----YLSVVEPITQIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119
+ S Y+ V + P I G +N+TCV S P P + W+ E
Sbjct: 188 GVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGS--PMPYVKWMQGAED 245
Score = 46.0 bits (109), Expect = 1e-06
Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 18/124 (14%)
Query: 26 SDQRFSCIHKPQNEDWTLQIK-YPQKRDSGIYECQVSTTPPIG---ISMYLSVVEPITQI 81
+ QRF I ++ L+I+ RD +YEC +G + L+V+
Sbjct: 48 NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQN--SVGEITVHAKLTVLREDQLP 105
Query: 82 IGGP-------DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTE---VSQLNLMQRESES 131
G P + + T + C S P P I W + S N ++ S
Sbjct: 106 SGFPNIDMGPQLKVVERTRTATMLCAA--SGNPDPEITWFKDFLPVDPSASNGRIKQLRS 163
Query: 132 SSFV 135
+
Sbjct: 164 GALQ 167
Score = 29.0 bits (65), Expect = 0.75
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGI---SMYLSVVEP 77
++ +DS Y C + +G+ ++V
Sbjct: 256 RNVLELTDVKDSANYTCVAMS--SLGVIEAVAQITVKSL 292
Score = 28.6 bits (64), Expect = 0.89
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRL 138
+ I P D G + C + +P P + W + + S L
Sbjct: 8 RFIKEPKDQIGVSGGVASFVCQA--TGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 139 VV 140
+
Sbjct: 66 RI 67
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 54.2 bits (130), Expect = 9e-10
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 7/115 (6%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
++ W + T + Y S + + ++D+G Y C VS
Sbjct: 32 RVEWKF---VQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEG 88
Query: 65 PIGIS---MYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
++L+V+ P ++ + G+ LTC H PP W +
Sbjct: 89 GQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSE-HDGSPPSEYSWFKD 142
Score = 35.3 bits (81), Expect = 0.004
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST-- 62
+ SW + I +LT + S + L DSG Y CQ
Sbjct: 136 EYSWFKD-GISMLTADAKKTRAFMNSS--FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY 192
Query: 63 -TPPIGISMYLSVVEPITQIIGG 84
T + ++ VE +GG
Sbjct: 193 GTAMRSEAAHMDAVEL---NVGG 212
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 54.3 bits (130), Expect = 1e-09
Identities = 22/133 (16%), Positives = 43/133 (32%), Gaps = 15/133 (11%)
Query: 5 QISWVR-HRDIHLLTVSGYTYTSDQRFSCI------------HKPQNEDWTLQIKYPQKR 51
I W+ D ++ Y+ D+ + + ++ D ++ + Q
Sbjct: 35 DIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLS 94
Query: 52 DSGIYECQVSTTP-PIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPA 110
D G Y+C+V P L+V+ + D G+ L C K P
Sbjct: 95 DIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGS-LPLQ 153
Query: 111 IYWLHNTEVSQLN 123
W ++ +
Sbjct: 154 FEWQKLSDSQTMP 166
Score = 32.3 bits (73), Expect = 0.041
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 18/76 (23%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
Q W + D + + + +K SG Y C V
Sbjct: 153 QFEWQKLSDSQTMPTPWLAEMTSP-------------VISVKNASSEYSGTYSCTVQN-- 197
Query: 65 PIGI---SMYLSVVEP 77
+G + L VV P
Sbjct: 198 RVGSDQCMLRLDVVPP 213
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 53.3 bits (128), Expect = 2e-09
Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 8/120 (6%)
Query: 34 HKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGI---SMYLSVVEPITQIIGGPDMYIN 90
+ + + L ++ D G Y C+ + G +L V II +
Sbjct: 51 YILKGSNTELTVRNIINSDGGPYVCRATN--KAGEDEKQAFLQVFVQ-PHIIQLKNETTY 107
Query: 91 KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELT 150
+ + L C + P P I W + + + VK S+ I ++
Sbjct: 108 ENGQVTLVCDAEGE--PIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK 165
Score = 36.7 bits (85), Expect = 0.002
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+I+W R D T + + D R K Q+ +L IK + DSG Y+C+ ++
Sbjct: 125 EITWKRAVDG--FTFTEGDKSLDGRIE--VKGQHGSSSLHIKDVKLSDSGRYDCEAAS-- 178
Query: 65 PIGI---SMYLSV 74
IG SMYL +
Sbjct: 179 RIGGHQKSMYLDI 191
Score = 30.2 bits (68), Expect = 0.26
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 77 PITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
I+ + +G M +C S P PAI W N
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRA--SGSPEPAISWFRN 41
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 54.0 bits (129), Expect = 2e-09
Identities = 26/153 (16%), Positives = 51/153 (33%), Gaps = 22/153 (14%)
Query: 2 SLAQISWVRHRDIHLLTVSGYTYTSD--------QRFSCIHKPQNEDWTLQIKYPQKRDS 53
+ Q++W + + V+ Y + +R +P D T+++ + D
Sbjct: 46 KITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVE-FLRPSFTDGTIRLSRLELEDE 104
Query: 54 GIYECQVSTTP--PIGISMYLSVVEPITQIIGGPDMYI-----NKGSTMNLTCVIKHSPE 106
G+Y C+ +T P + L+V+ T I G + + TC +
Sbjct: 105 GVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGK- 163
Query: 107 PPPAIYWLHN-----TEVSQLNLMQRESESSSF 134
PP + W N + S +
Sbjct: 164 PPSVVSWETRLKGEAEYQEIRNPNGTVTVISRY 196
Score = 46.3 bits (109), Expect = 1e-06
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 5/100 (5%)
Query: 42 TLQIKYPQKRDSGIYECQVS-TTPPIGISMYLSV-VEPITQIIGGPDMYINKGSTMNLTC 99
++ ++ C V+ S+ L+V EP I G + + + LTC
Sbjct: 195 RYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTC 254
Query: 100 VIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLV 139
+P P +W L + F K +
Sbjct: 255 KADANP-PATEYHWTTLN--GSLPKGVEAQNRTLFFKGPI 291
Score = 28.9 bits (64), Expect = 0.72
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 14/100 (14%)
Query: 73 SVVEPITQIIGGP-DMYINKGSTMNLTCVIKHSPEPPPA--IYWLHNTEVSQLNL----- 124
+ +Q++ MY G+ + L C + + W +T S+ N+
Sbjct: 9 QMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNP 68
Query: 125 MQRESESSSFVKRLVVL------LSVSIVELTWKLEATYI 158
S + + +R+ L ++ + L + E YI
Sbjct: 69 SMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYI 108
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 53.5 bits (128), Expect = 2e-09
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 10/139 (7%)
Query: 5 QISWVRHRDIHLLTV----SGYTYTSDQRFSCI---HKPQNEDWTLQIKYPQKRDSGIYE 57
Q++W RH + + V G +Y+ +R + + D +L++ + D G Y
Sbjct: 35 QLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYT 94
Query: 58 CQVSTTP--PIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLH 115
C T P + ++L V+ + + CV PP I W
Sbjct: 95 CLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGR-PPAQITWHS 153
Query: 116 NTEVSQLNLMQRESESSSF 134
+ S +
Sbjct: 154 DLGGMPQTSQVPGFLSGTV 172
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 53.0 bits (127), Expect = 3e-09
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 33 IHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGI---SMYLSVVE-----PITQIIGG 84
+K +N+ W+L ++ D G Y C V G + +L VVE PI Q
Sbjct: 68 GYKVRNQHWSLIMESVVPSDKGNYTCVVEN--EYGSINHTYHLDVVERSRHRPILQAGLP 125
Query: 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119
+ G + C + P I W+ + E
Sbjct: 126 ANASTVVGGDVEFVCKVYSD--AQPHIQWIKHVEK 158
Score = 39.9 bits (93), Expect = 1e-04
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 5 QISWVRH--RDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62
I W++H ++ G Y + S I+ E L + + D+G Y C+VS
Sbjct: 149 HIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAE--VLALFNVTEADAGEYICKVSN 206
Query: 63 TPPIGI---SMYLSVVEP 77
IG S +L+V+
Sbjct: 207 Y--IGQANQSAWLTVLPK 222
Score = 28.7 bits (64), Expect = 0.78
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ +T+ C P P + WL N
Sbjct: 28 LHAVPAANTVKFRCPA--GGNPMPTMRWLKN 56
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 52.9 bits (126), Expect = 3e-09
Identities = 29/144 (20%), Positives = 45/144 (31%), Gaps = 15/144 (10%)
Query: 2 SLAQISWVRHRDIHLLTVSGYTYTSDQ--------RFSCIHKPQNEDWTLQIKYPQKRDS 53
+ W R +I T D+ RF + Q ++ +L I + D+
Sbjct: 35 PPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDT 94
Query: 54 GIYECQVSTTPPIG-----ISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPE-- 106
G Y +V + + L V I + + G L+C + S E
Sbjct: 95 GSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAG 154
Query: 107 PPPAIYWLHNTEVSQLNLMQRESE 130
PP W N R SE
Sbjct: 155 PPLTFSWTGNALSPLDPETTRSSE 178
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 53.3 bits (128), Expect = 4e-09
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTP-PIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCV 100
L I+ D G YEC+ + + + D + GS + +CV
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCV 317
Query: 101 IKHSPEPPPAIYWLHN 116
+P PA+ WL +
Sbjct: 318 ASG--KPRPAVRWLRD 331
Score = 42.9 bits (101), Expect = 2e-05
Identities = 20/124 (16%), Positives = 32/124 (25%), Gaps = 26/124 (20%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQV--- 60
W+ + + + G + S L I + D G Y C
Sbjct: 132 LSYRWLLNEFPNFIPADGRRFVSQ-----------TTGNLYIAKTEASDLGNYSCFATSH 180
Query: 61 ---------STTPPIGISMYLSVVEPITQIIGGP-DMYINKGSTMNLTCVIKHSPEPPPA 110
S + ++ + + P D Y G + L C P P
Sbjct: 181 IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFA--FGNPVPQ 238
Query: 111 IYWL 114
I W
Sbjct: 239 IKWR 242
Score = 36.8 bits (85), Expect = 0.002
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 42 TLQIKYP-QKRDSGIYECQVSTTPPIGI----SMYLSVVEPITQIIGGPD-MYINKGSTM 95
L I P + +D+G Y+C + G L D + I +G +
Sbjct: 62 DLVISNPVKAKDAGSYQCVATN--ARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGV 119
Query: 96 NLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQR 127
TC P + WL N + + R
Sbjct: 120 MFTCSPPPHY-PALSYRWLLNEFPNFIPADGR 150
Score = 28.7 bits (64), Expect = 0.86
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 42 TLQIKYPQKRDSGIYECQVS 61
L+ DSG+Y+C
Sbjct: 347 ELRFSKLVLEDSGMYQCVAE 366
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 52.7 bits (126), Expect = 4e-09
Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 7/115 (6%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
++ W T Y + S + + K + D+G Y C VS
Sbjct: 35 RVEWKF---DQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEG 91
Query: 65 PIGIS---MYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ L V+ P ++ G+ LTC PP W +
Sbjct: 92 GNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSE-QDGSPPSEYTWFKD 145
Score = 31.5 bits (71), Expect = 0.082
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+ +W +D ++ + + + S + P L D+G Y C+
Sbjct: 139 EYTW--FKDGIVMPTNPKSTRAFSNSSYVLNP--TTGELVFDPLSASDTGEYSCEAR 191
Score = 28.4 bits (63), Expect = 1.0
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVL 141
P++ I + + + L+C P + W + + + ++S+ R+ L
Sbjct: 12 PEVRIPENNPVKLSCAYSGF--SSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL 66
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 53.1 bits (127), Expect = 6e-09
Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 6/99 (6%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEP--ITQIIGGPDMYINKGSTMNLTC 99
+ + D+G Y C S S +++VE I D I++ +
Sbjct: 291 FAFVSSVARNDTGYYTCSSSK--HPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSV 348
Query: 100 VIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRL 138
+ P W + + ++ S
Sbjct: 349 --RFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCN 385
Score = 43.5 bits (102), Expect = 1e-05
Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 8/87 (9%)
Query: 33 IHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVVEPITQIIGGPDMYI 89
++ I + +G Y + + I +S+ + + P
Sbjct: 95 FDLQNRGVVSMVILKMTETQAGEYLLFIQS--EATNYTILFTVSIRNTLLYTLRRPYFRK 152
Query: 90 NKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ L C+ P P + W+
Sbjct: 153 MENQD-ALVCI--SESVPEPIVEWVLC 176
Score = 38.5 bits (89), Expect = 5e-04
Identities = 19/161 (11%), Positives = 40/161 (24%), Gaps = 25/161 (15%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+ WV + +H+ D C
Sbjct: 170 IVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTD---------------IRCCARNEL 214
Query: 65 PIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN-TEVSQLN 123
+ ++ T P +++ G + + C H + W + + N
Sbjct: 215 GRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVN-HGFGLTWELENKALEEGN 273
Query: 124 LMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAGTYT 164
+ + S++ ++ VS V G YT
Sbjct: 274 YFEMSTYSTNRTMIRILFAFVSSVARN--------DTGYYT 306
Score = 38.5 bits (89), Expect = 5e-04
Identities = 7/68 (10%), Positives = 19/68 (27%), Gaps = 5/68 (7%)
Query: 51 RDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPA 110
S Y P + L T + + ++ +++ L ++ +
Sbjct: 25 GKSSSYPMVSE--SPEDLGCALRPQSSGT-VYEAAAVEVDVSASITLQVLVDAP--GNIS 79
Query: 111 IYWLHNTE 118
W+
Sbjct: 80 CLWVFKHS 87
Score = 32.7 bits (74), Expect = 0.047
Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 5/57 (8%)
Query: 24 YTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVVEP 77
S + F C K + +++ K G Y L++
Sbjct: 361 TFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAEN--DDAQFTKMFTLNIRSG 415
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 52.8 bits (126), Expect = 6e-09
Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 11/114 (9%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
++W + L Y S + + + D+G Y C S P
Sbjct: 259 GLTWEL--ENKALEEGNYFEMSTYSTNRTMI---RILFAFVSSVARNDTGYYTCSSSKHP 313
Query: 65 PIGISMYLSVVEP--ITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
S +++VE I D I++ + K P W +
Sbjct: 314 --SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAY--PQIRCTWTFS 363
Score = 47.4 bits (112), Expect = 5e-07
Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 21/135 (15%)
Query: 24 YTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVVEPITQ 80
S + F C K + +++ K G Y L++ Q
Sbjct: 361 TFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAEN--DDAQFTKMFTLNIRRK-PQ 417
Query: 81 IIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNL------MQRESESSSF 134
+ + + S +C P P+ W ++ S + +
Sbjct: 418 V-------LAEASASQASCFSDG--YPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKV 468
Query: 135 VKRLVVLLSVSIVEL 149
+ V ++++ E
Sbjct: 469 FGQWVSSSTLNMSEA 483
Score = 42.0 bits (98), Expect = 3e-05
Identities = 13/114 (11%), Positives = 32/114 (28%), Gaps = 2/114 (1%)
Query: 38 NEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNL 97
+ K + C + ++ T P +++ G + +
Sbjct: 188 PAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWI 247
Query: 98 TCVIKHSPEPPPAIYWLHN-TEVSQLNLMQRESESSSFVKRLVVLLSVSIVELT 150
C H + W + + N + + S++ ++ VS V
Sbjct: 248 RCKAVHVN-HGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN 300
Score = 41.6 bits (97), Expect = 4e-05
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTP-PIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCV 100
++ I + +G Y + + I +S+ + + P + L C+
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDA-LVCI 162
Query: 101 IKHSPEPPPAIYWLHN 116
+ P P + W+
Sbjct: 163 SESV--PEPIVEWVLC 176
Score = 36.6 bits (84), Expect = 0.003
Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 51 RDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPA 110
S Y P + L T + + ++ +++ L ++ +
Sbjct: 25 GKSSSYPMVSE--SPEDLGCALRPQSSGT-VYEAAAVEVDVSASITLQVLVDAP--GNIS 79
Query: 111 IYWLHNTEVSQLNLMQRESESSSFVKRLVV 140
W+ S LN + V +V+
Sbjct: 80 CLWVFKH--SSLNCQPHFDLQNRGVVSMVI 107
Score = 30.1 bits (67), Expect = 0.36
Identities = 10/85 (11%), Positives = 22/85 (25%), Gaps = 5/85 (5%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+W + D T R + + + + + +C
Sbjct: 438 SWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYN-- 495
Query: 65 PIG---ISMYLSVVEPITQIIGGPD 86
+G ++ L+ P I G
Sbjct: 496 SLGTSCETILLNSPGPFPFIQDGGT 520
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 52.2 bits (125), Expect = 8e-09
Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 13/136 (9%)
Query: 37 QNEDWTLQIKYPQKRDSGIYECQVSTTPPIGI---SMYLSVVE-----PITQIIGGPDMY 88
+++ W+L ++ D G Y C V G + L V+E PI Q +
Sbjct: 68 RHQQWSLVMESVVPSDRGNYTCVVEN--KFGSIRQTYTLDVLERSPHRPILQAGLPANQT 125
Query: 89 INKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVE 148
GS + C + P I WL + EV+ + + + +K + + V
Sbjct: 126 AVLGSDVEFHCKVYSD--AQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183
Query: 149 LTWKLEATYILAGTYT 164
L + G Y
Sbjct: 184 LRLA-NVSERDGGEYL 198
Score = 41.1 bits (96), Expect = 5e-05
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 12/104 (11%)
Query: 5 QISWVRHRDIHL--LTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62
I W++H +++ + G Y + + I + D L++ +RD G Y C+ +
Sbjct: 145 HIQWLKHVEVNGSKVGPDGTPYVTVLKSW-ISESVEADVRLRLANVSERDGGEYLCRATN 203
Query: 63 TPPIGI---SMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKH 103
IG+ + +LSV P + + ++ H
Sbjct: 204 F--IGVAEKAFWLSVHGPRAA----EEELVEADEAGSVHHHHHH 241
Score = 29.5 bits (66), Expect = 0.45
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ + +T+ C +P P+I WL N
Sbjct: 24 LLAVPAANTVRFRCPAAGNP--TPSISWLKN 52
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 51.6 bits (123), Expect = 1e-08
Identities = 23/142 (16%), Positives = 38/142 (26%), Gaps = 13/142 (9%)
Query: 34 HKPQNEDWTLQIKYPQKRDSGIYECQVS-----TTPPIGISMYLSVVEPIT----QIIGG 84
L + ++ G Y C S PI + +E I+
Sbjct: 155 IHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSP 214
Query: 85 PD--MYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLL 142
+ M ++ GS + L C + YW N V + + S
Sbjct: 215 ANETMEVDLGSQIQLICNVTGQ--LSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRR 272
Query: 143 SVSIVELTWKLEATYILAGTYT 164
S I L + +T
Sbjct: 273 STLITVLNISEIESRFYKHPFT 294
Score = 44.7 bits (105), Expect = 4e-06
Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 9/91 (9%)
Query: 37 QNEDWTLQIKYPQKRDSGIYECQVS-TTPPIGISMYLSVVEPITQIIGGPDMYINK---- 91
L + DSG Y C V ++ + I + VE + +
Sbjct: 58 HQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPV 117
Query: 92 GSTMNLTCVIKHSPE----PPPAIYWLHNTE 118
L C + P + W + +
Sbjct: 118 AGDGGLVCPYMEFFKNENNELPKLQWYKDCK 148
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 51.7 bits (124), Expect = 1e-08
Identities = 19/123 (15%), Positives = 42/123 (34%), Gaps = 21/123 (17%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+ W +R + G Y I + + L I D+ +Y+ + +
Sbjct: 35 IVKW--YRQGKEIIADGLKYR-------IQEFKGGYHQLIIASVTDDDATVYQVRATN-- 83
Query: 65 PIG---ISMYLSVVEP----ITQIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
G + L V P + + + G ++ +G +++ +P P I W
Sbjct: 84 QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSG--KPDPVITWQKG 141
Query: 117 TEV 119
++
Sbjct: 142 QDL 144
Score = 31.3 bits (71), Expect = 0.13
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 15/76 (19%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
I+W + L+ +G+ + ++ + +++D+G Y
Sbjct: 135 VITW--QKGQDLIDNNGHYQ--------VIVTRSFTSLVFPNGVERKDAGFYVVCAKN-- 182
Query: 65 PIGI---SMYLSVVEP 77
GI ++ L V +
Sbjct: 183 RFGIDQKTVELDVADV 198
Score = 27.0 bits (60), Expect = 2.8
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
++ + S L C + P P + W
Sbjct: 6 HFKEELRNLNVRYQSNATLVCKVTGH--PKPIVKWYRQ 41
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 50.5 bits (121), Expect = 2e-08
Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 21/125 (16%)
Query: 5 QISWVRH-RDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYEC--QVS 61
+SW+ H ++ SD RF+ + LQI K D GIY C +V
Sbjct: 33 AVSWLYHNEEVTT--------ISDNRFA-----MLANNNLQILNINKSDEGIYRCEGRVE 79
Query: 62 TTPPIGISMYLSVVE---PITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTE 118
I + +V I+ + +G M +C S P PAI W N +
Sbjct: 80 ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGS--PEPAISWFRNGK 137
Query: 119 VSQLN 123
+ + N
Sbjct: 138 LIEEN 142
Score = 28.2 bits (63), Expect = 1.1
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 13/57 (22%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
ISW R+ L+ + + + + L ++ D G Y C+ +
Sbjct: 129 AISW--FRNGKLIEENEK-----------YILKGSNTELTVRNIINSDGGPYVCRAT 172
Score = 27.8 bits (62), Expect = 1.3
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+G + C + S P PA+ WL++
Sbjct: 11 PQEFKQGEDAEVVCRV--SSSPAPAVSWLYH 39
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 50.5 bits (121), Expect = 2e-08
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 19/118 (16%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
++SW RD G ++ + L I K +SG Y + +
Sbjct: 36 EVSW--FRD-------GQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATN-- 84
Query: 65 PIGI---SMYLSVVEPIT--QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
G + L V + M + +GS + L + P P + + +
Sbjct: 85 GSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGI--PTPVVKFYRD 140
Score = 28.5 bits (64), Expect = 0.81
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ + +GST I S P P + W +
Sbjct: 14 SVVVLEGSTATFEAHI--SGFPVPEVSWFRD 42
Score = 27.8 bits (62), Expect = 1.6
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 25 TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
S F + + ++L I DSG Y +
Sbjct: 145 QSSLDFQISQ--EGDLYSLLIAEAYPEDSGTYSVNAT 179
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 51.4 bits (123), Expect = 2e-08
Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 16/114 (14%)
Query: 6 ISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-- 63
I W + + S QR + + + L I D+GIY CQ +
Sbjct: 35 IDW-YNPQGEKII-------STQRV--VVQKEGVRSRLTIYNANIEDAGIYRCQATDAKG 84
Query: 64 PPIGISMYLSVVEPITQIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
++ L + + +T +G + C + S P PA+ WL++
Sbjct: 85 QTQEATVVLEIYQKLT-FREVVSPQEFKQGEDAEVVCRV--SSSPAPAVSWLYH 135
Score = 51.0 bits (122), Expect = 2e-08
Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 21/125 (16%)
Query: 5 QISWVRH-RDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS-- 61
+SW+ H ++ SD RF+ + LQI K D GIY C+
Sbjct: 129 AVSWLYHNEEVTT--------ISDNRFA-----MLANNNLQILNINKSDEGIYRCEGRVE 175
Query: 62 TTPPIGISMYLSVVEPITQIIGGP---DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTE 118
I + +V I + +G M +C S P PAI W N +
Sbjct: 176 ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGS--PEPAISWFRNGK 233
Query: 119 VSQLN 123
+ + N
Sbjct: 234 LIEEN 238
Score = 30.2 bits (68), Expect = 0.30
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 18/76 (23%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
ISW R + L+ + + + + L ++ D G Y C+ +
Sbjct: 225 AISWFR--NGKLIEENEK-----------YILKGSNTELTVRNIINSDGGPYVCRATN-- 269
Query: 65 PIG---ISMYLSVVEP 77
G +L V
Sbjct: 270 KAGEDEKQAFLQVFVQ 285
Score = 26.7 bits (59), Expect = 3.6
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
Q+ + ++ G + TC PE I W +
Sbjct: 6 QVTISLSKVELSVGESKFFTCTAIGEPES---IDWYNP 40
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 51.1 bits (122), Expect = 2e-08
Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 3/84 (3%)
Query: 35 KPQNEDWTLQIKYPQKRDSGIYECQVSTTP-PIGISMYLSVVEPITQIIGGP-DMYINKG 92
L +++G Y C P +++L V +P ++ + +
Sbjct: 45 YSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFED 104
Query: 93 STMNLTCVIKHSPEPPPAIYWLHN 116
L C++ P + +
Sbjct: 105 QDALLPCLLT-DPVLEAGVSLVRV 127
Score = 46.5 bits (110), Expect = 9e-07
Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 21/137 (15%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63
A +S VR R L+ + Y+++ I + S Y+C
Sbjct: 120 AGVSLVRVRGRPLMRHTNYSFSPWH-------------GFTIHRAKFIQSQDYQCSALMG 166
Query: 64 PPIGISMYLSVV------EPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNT 117
+S+ + + P + ++ +G + C +L +
Sbjct: 167 GRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSV--DVNFDVFLQHN 224
Query: 118 EVSQLNLMQRESESSSF 134
Q + ++ +
Sbjct: 225 NTKLAIPQQSDFHNNRY 241
Score = 33.8 bits (77), Expect = 0.015
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGI---SMYLSVVEP 77
TL + + +G Y C S G SM+ VVE
Sbjct: 246 TLNLDQVDFQHAGNYSCVASN--VQGKHSTSMFFRVVES 282
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 50.5 bits (121), Expect = 2e-08
Identities = 20/127 (15%), Positives = 39/127 (30%), Gaps = 29/127 (22%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYEC------ 58
+ W +R + G Y I + + L I D+ +Y+
Sbjct: 35 IVKW--YRQGKEIIADGLKYR-------IQEFKGGYHQLIIASVTDDDATVYQVRATNQG 85
Query: 59 -QVSTTPPIGISMYLSVVEPIT----QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIY 112
VS + L V P + + G ++ +G +++ P P I
Sbjct: 86 GSVSG------TASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGK--PDPVIT 137
Query: 113 WLHNTEV 119
W ++
Sbjct: 138 WQKGQDL 144
Score = 30.5 bits (69), Expect = 0.16
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 15/75 (20%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
I+W + L+ +G + + ++ + +++D+G Y
Sbjct: 135 VITW--QKGQDLIDNNG-------HYQ-VIVTRSFTSLVFPNGVERKDAGFYVVCAKN-- 182
Query: 65 PIGI---SMYLSVVE 76
GI ++ L V +
Sbjct: 183 RFGIDQKTVELDVAD 197
Score = 29.3 bits (66), Expect = 0.48
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
++ + S L C + + P P + W
Sbjct: 13 NLNVRYQSNATLVCKV--TGHPKPIVKWYRQ 41
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 50.3 bits (120), Expect = 2e-08
Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 18/118 (15%)
Query: 5 QISWVRHRD---IHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
I W + D I T+ + ++ TL+IK+ + D IY+ +
Sbjct: 32 DIKWEKTSDKKKIAQFRKEKETFKEKDTYK-----LFKNGTLKIKHLKTDDQDIYKVSIY 86
Query: 62 TTP---PIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
T + L + E +++ P + LTC + + P + +
Sbjct: 87 DTKGKNVLEKIFDLKIQERVSK----PKISWT-CINTTLTCEVMNG--TDPELNLYQD 137
Score = 25.6 bits (56), Expect = 7.0
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVS--IVEL 149
G +NL + I W ++ ++ ++E E+ + + + I L
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 150 TWKLEATYIL 159
+ Y +
Sbjct: 74 KTDDQDIYKV 83
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 49.8 bits (119), Expect = 2e-08
Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 14/117 (11%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
I WV+ G + + Q+ L +K ++ D+G Y CQV
Sbjct: 33 DIQWVK---------DGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGG 83
Query: 65 PIGIS--MYLSVVEPITQIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTE 118
IS ++L+V P D+ + + L+C PE P I W T
Sbjct: 84 ETEISQPVWLTVEGVP-FFTVEPKDLAVPPNAPFQLSCEAVGPPE-PVTIVWWRGTT 138
Score = 28.6 bits (64), Expect = 0.77
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN-TEVSQLNLMQRESESSSFVKR 137
+++G P + +++G + L C + P I W+ + V L+ + ++
Sbjct: 4 KLMGAPVKLTVSQGQPVKLNCSV--EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 138 LVV 140
L +
Sbjct: 62 LSL 64
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 51.0 bits (121), Expect = 3e-08
Identities = 28/156 (17%), Positives = 47/156 (30%), Gaps = 26/156 (16%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST-- 62
I+W +++ L + G Y+ L I P+ DSG Y+C V
Sbjct: 160 NITW--YKNNQELIIDGTKYS------------QSGQNLIIHNPELEDSGRYDCYVHYDD 205
Query: 63 -----TPPIGISMYLSVVEPITQ---IIGGPDMYINKGSTMNLTCVIKHSPEP--PPAIY 112
+ L+V+ +I P + + G N+TC + I
Sbjct: 206 VRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLID 265
Query: 113 WLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVE 148
W + + S +S L V
Sbjct: 266 WENPSGWIIGLDFGVYSILTSSGGITEATLYFENVT 301
Score = 39.4 bits (91), Expect = 2e-04
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Query: 42 TLQIKYPQKRDSG-IYECQV--STTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLT 98
L I DS Y C V + + + +P + I ++ + ++L
Sbjct: 90 DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLY 149
Query: 99 CVIKHSPEPPPAIYWLHN 116
C I + I W N
Sbjct: 150 CGI-LYAKHYNNITWYKN 166
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 50.6 bits (121), Expect = 3e-08
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 21/115 (18%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
I+W ++ L + + + L+I + DSG Y C S
Sbjct: 253 DIAW--YKKGGDLPSDKAKFENFNK------------ALRITNVSEEDSGEYFCLASN-- 296
Query: 65 PIG---ISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+G ++ + V + ++ + G L C + P P + W+ N
Sbjct: 297 KMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRA--NGNPKPTVQWMVN 349
Score = 38.3 bits (89), Expect = 6e-04
Identities = 23/128 (17%), Positives = 33/128 (25%), Gaps = 30/128 (23%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDS-GIYECQVS- 61
I W+ + T D+R S Q + L +D Y C
Sbjct: 147 PVIFWMSSSMEPI--------TQDKRVS-----QGHNGDLYFSNVMLQDMQTDYSCNARF 193
Query: 62 ---TTPPIGISMYLSVVE---------PITQIIGGP-DMYINKGSTMNLTCVIKHSPEPP 108
T L V+ G + +G + L C+ S P
Sbjct: 194 HFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA--SGVPT 251
Query: 109 PAIYWLHN 116
P I W
Sbjct: 252 PDIAWYKK 259
Score = 32.9 bits (75), Expect = 0.039
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 37 QNEDWTLQIKYPQKRDSGIYECQVSTTPPIGI---SMYLSVVE 76
+ T+ + Q +Y+C S G + ++SV++
Sbjct: 363 EVAGDTIIFRDTQISSRAVYQCNTSN--EHGYLLANAFVSVLD 403
Score = 32.9 bits (75), Expect = 0.040
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 12/84 (14%)
Query: 42 TLQIKYP----QKRDSGIYECQVSTTPPIGI----SMYLSVVEPITQIIGGPD-MYINKG 92
TL I + + G Y+C G + L V + D + + +G
Sbjct: 74 TLVIDFRSGGRPEEYEGEYQCFARN--KFGTALSNRIRLQVSKSPLWPKENLDPVVVQEG 131
Query: 93 STMNLTCVIKHSPEPPPAIYWLHN 116
+ + L C P P I+W+ +
Sbjct: 132 APLTLQCNPPPG-LPSPVIFWMSS 154
Score = 32.1 bits (73), Expect = 0.062
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 65 PIGISMYLSVVEPITQIIGGP--DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
P+ S+ + +P I D ++ + + C K P P+ +W N
Sbjct: 4 PMDPSIQNELTQP-PTITKQSAKDHIVDPRDNILIECEAK--GNPAPSFHWTRN 54
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 49.6 bits (118), Expect = 5e-08
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 9/120 (7%)
Query: 6 ISWVRHRDIHLLTVSGYTYTSDQ------RFSCIHKPQNE-DWTLQIKYPQKRDSGIYEC 58
+ W + V G Q R + + + LQI + +D+G+Y C
Sbjct: 38 VYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRC 97
Query: 59 QVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTE 118
+S + + V P +I + S LTC + P+ + W +
Sbjct: 98 MISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPK--AEVIWTSSDH 155
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 50.0 bits (118), Expect = 6e-08
Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 2/142 (1%)
Query: 18 TVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEP 77
+ + R S + +P N +T+ + RD+G Y C + ++ + ++E
Sbjct: 383 SEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEG 442
Query: 78 ITQIIGGPDMYINKGSTMNLTCVI--KHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFV 135
+ ++ G T+ + C K S W + + + + S++
Sbjct: 443 EPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNC 502
Query: 136 KRLVVLLSVSIVELTWKLEATY 157
L+S+++ +T E Y
Sbjct: 503 DENSRLVSLTLNLVTRADEGWY 524
Score = 46.9 bits (110), Expect = 9e-07
Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 13/151 (8%)
Query: 25 TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIG-----ISMYLSVVEPIT 79
+ R + ++ +++ I +K D+G Y C + + + L V E T
Sbjct: 274 AFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEEST 333
Query: 80 QIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVK--- 136
+ GS++ + C + + +I + E +Q +S +VK
Sbjct: 334 IPRSPTVVKGVAGSSVAVLCPY--NRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQY 391
Query: 137 --RLVVLLSVSIVELTWKLE-ATYILAGTYT 164
RL +L T L T AG Y
Sbjct: 392 EGRLSLLEEPGNGTFTVILNQLTSRDAGFYW 422
Score = 42.7 bits (99), Expect = 2e-05
Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 6/145 (4%)
Query: 5 QISWVR----HRDIHLLTVSGY-TYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQ 59
+ W R I L++ GY + R + + P+N + + I + DSG Y+C
Sbjct: 34 RKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCG 93
Query: 60 VSTT-PPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTE 118
+ + + L V + + ++ G T+ + C K +
Sbjct: 94 LGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGL 153
Query: 119 VSQLNLMQRESESSSFVKRLVVLLS 143
L + + ++ R+ + +
Sbjct: 154 YPVLVIDSSGYVNPNYTGRIRLDIQ 178
Score = 42.7 bits (99), Expect = 2e-05
Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 5/105 (4%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+ W + + + + + +L + + D G Y C V
Sbjct: 474 EKYWCKWNNTGCQALPS-QDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGH 532
Query: 65 PIGI--SMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEP 107
G ++Y++V E D+ + K V+
Sbjct: 533 FYGETAAVYVAVEERKAAGS--RDVSLAKADAAPDEKVLDSGFRE 575
Score = 33.8 bits (76), Expect = 0.018
Identities = 12/129 (9%), Positives = 35/129 (27%), Gaps = 21/129 (16%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSC-----IHKPQNEDWTLQIKYPQKRDSGIYECQ 59
+ S + ++ + V + + ++ I +++ I + D+G Y CQ
Sbjct: 144 RKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQ 203
Query: 60 VSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVI------------KHSPEP 107
+ + +Y + ++ C + + S
Sbjct: 204 AGDDS----NSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGE 259
Query: 108 PPAIYWLHN 116
+
Sbjct: 260 NCDVVVNTL 268
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 49.1 bits (117), Expect = 1e-07
Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 16/116 (13%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT- 63
++ + +G + + L K D G+Y C+V
Sbjct: 243 YPNYFK---------NGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGV 293
Query: 64 -PPIGISMYLSVVEP--ITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
P S+ L+VV Q + + +G + + C + P P + W HN
Sbjct: 294 GKPQKHSLKLTVVSAPKYEQKP-EKVIVVKQGQDVTIPCKVTG--LPAPNVVWSHN 346
Score = 43.4 bits (102), Expect = 1e-05
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 7/94 (7%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGI----SMYLSVVEPITQIIGGPDMYINKGSTMNL 97
+L PQ D G Y+C T P G+ + I + +G L
Sbjct: 63 SLVFLRPQASDEGHYQCFAET--PAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL 120
Query: 98 TCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESES 131
CV+ ++ P P I W + N + +
Sbjct: 121 DCVLPNAY-PKPLITWKKRLSGADPNADVTDFDR 153
Score = 41.0 bits (96), Expect = 7e-05
Identities = 17/128 (13%), Positives = 26/128 (20%), Gaps = 24/128 (18%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQK---RDSGIYECQV 60
I+W + + + D+R + D L K D Y C
Sbjct: 131 PLITW--KKRLSGADPNADVTDFDRRIT-----AGPDGNLYFTIVTKEDVSDIYKYVCTA 183
Query: 61 --------STTPPIGISMY----LSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPP 108
I DM G + C+ P
Sbjct: 184 KNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMY--GSNPM 241
Query: 109 PAIYWLHN 116
+ N
Sbjct: 242 GYPNYFKN 249
Score = 28.3 bits (63), Expect = 1.4
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 42 TLQIKYPQKRDSGIYECQVS 61
L IK + D G Y C+ +
Sbjct: 361 GLVIKGVKNGDKGYYGCRAT 380
Score = 27.6 bits (61), Expect = 2.4
Identities = 4/32 (12%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
++ + + L C+I+ + W +
Sbjct: 14 AEVLFRENNPTVLECIIEGND-QGVKYSWKKD 44
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 48.8 bits (115), Expect = 1e-07
Identities = 20/155 (12%), Positives = 45/155 (29%), Gaps = 13/155 (8%)
Query: 3 LAQISWVRHRDIHLLTVSGYTYTSDQRFSC-IHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+ + ++ + S S F TL++ + +D G Y CQV+
Sbjct: 51 VFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVA 110
Query: 62 TTPP------IGISMYLSVV----EPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAI 111
S+ L V + + +++G+ + +TC +
Sbjct: 111 QWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDC--ANANV 168
Query: 112 YWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSI 146
W + ++ + + S I
Sbjct: 169 TWYTGPTFFENYETGTYQPLANKNQFGITWFSSEI 203
Score = 32.2 bits (72), Expect = 0.067
Identities = 9/84 (10%), Positives = 26/84 (30%), Gaps = 11/84 (13%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDW----------TLQIKYPQKRDS 53
A ++W +G + + + L I+ + D+
Sbjct: 166 ANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDA 225
Query: 54 GIYECQVSTTP-PIGISMYLSVVE 76
G C+++T + ++++
Sbjct: 226 GRVWCELATGQGELDADRSSTILK 249
Score = 29.9 bits (66), Expect = 0.33
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 85 PDMYINKGSTMNLTC-VIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVV 140
++ ++ G T+ L C + PP I WL + + + + + V
Sbjct: 10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFV 66
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 47.9 bits (114), Expect = 1e-07
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
Query: 25 TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP--PIGISMYLSVVEPITQII 82
S QR + + L I D+GIY CQ + ++ L + + +T
Sbjct: 44 ISTQRVV--VQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFRE 101
Query: 83 GGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTE 118
+G + C + S P PA+ WL++ E
Sbjct: 102 VVSPQEFKQGEDAEVVCRVSSS--PAPAVSWLYHNE 135
Score = 28.6 bits (64), Expect = 0.72
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+SW+ +T SD RF+ + LQI K D GIY C+
Sbjct: 127 AVSWLY--HNEEVTTI-----SDNRFA-----MLANNNLQILNINKSDEGIYRCEGR 171
Score = 26.7 bits (59), Expect = 3.9
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
Q+ + ++ G + TC EP ++
Sbjct: 4 QVTISLSKVELSVGESKFFTCTAIG--EPESIDWYNPQ 39
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 48.3 bits (114), Expect = 2e-07
Identities = 20/135 (14%), Positives = 44/135 (32%), Gaps = 18/135 (13%)
Query: 34 HKPQNEDWTLQIKYPQKRDSGIYECQVSTTP-----PIGISMYLSVVEPITQ----IIGG 84
+ E L ++G Y C V+ + ++ + VV +I
Sbjct: 170 NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHS 229
Query: 85 P----DMYINKGSTMNLTCVIKH--SPEPPPAIYWLHN---TEVSQLNLMQRESESSSFV 135
P G + + C + + ++W + + +++ ES S S
Sbjct: 230 PNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRT 289
Query: 136 KRLVVLLSVSIVELT 150
+ +SI ++T
Sbjct: 290 EDETRTQILSIKKVT 304
Score = 45.6 bits (107), Expect = 2e-06
Identities = 21/121 (17%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 6 ISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS-TTP 64
+ W R L + R S E L + D+G Y C + TT
Sbjct: 50 LIWYWTRQDRDLEEPINFRLPENRIS------KEKDVLWFRPTLLNDTGNYTCMLRNTTY 103
Query: 65 PIGISMYLSVVEP----ITQIIGGPDMYINKGSTMNLTCVIKH---SPEPPPAIYWLHNT 117
++ L VV+ + + + +TC P I W
Sbjct: 104 CSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGC 163
Query: 118 E 118
Sbjct: 164 Y 164
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 46.9 bits (111), Expect = 3e-07
Identities = 20/124 (16%), Positives = 47/124 (37%), Gaps = 8/124 (6%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQ----NEDWTLQIKYPQKRDSGIYECQV 60
I+W+ + V T + + + + + + ++LQ+ + D+G Y Q+
Sbjct: 30 FITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQI 89
Query: 61 ST-TPPIGISMYLSVVEPITQ--IIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNT 117
ST T S L ++ + + ++ N ++LTC ++ + + W
Sbjct: 90 STKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVE-DADDNVSFRWEALG 148
Query: 118 EVSQ 121
Sbjct: 149 NTLS 152
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 47.6 bits (113), Expect = 3e-07
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
Query: 23 TYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP-PIGISMYLSVVEPITQI 81
+ P++ TL + +++G Y C P +++L V +P
Sbjct: 33 EWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSW 92
Query: 82 IGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
++ + +G L C+I P ++ +
Sbjct: 93 NLLAQEVTVVEGQEAVLPCLIT-DPALKDSVSLMRE 127
Score = 44.2 bits (104), Expect = 5e-06
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 8/81 (9%)
Query: 42 TLQIKYPQKRDSGIYECQVS------TTPPIGISMYLSVVEPITQIIGGPDMYINKGSTM 95
I+ + DS Y C+ T+ I + + EP + + +G
Sbjct: 145 GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAA 204
Query: 96 NLTCVIKHSPEPPPAIYWLHN 116
+ C ++ L
Sbjct: 205 QIVCSATNA--EVGFNVILKR 223
Score = 32.2 bits (73), Expect = 0.060
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGI---SMYLSVVEP 77
L + +D+GIY C S +G +M VVE
Sbjct: 246 ALSLNAVDFQDAGIYSCVASN--DVGTRTATMNFQVVES 282
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 47.2 bits (112), Expect = 4e-07
Identities = 24/98 (24%), Positives = 28/98 (28%), Gaps = 19/98 (19%)
Query: 36 PQNEDWTLQIKYPQKRDSGIYEC----------------QVSTTPPIGISMYLSVVEPIT 79
P L +D+G Y C V P V E
Sbjct: 60 PNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKL 119
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
QI P + GST+ L CV S P P W N
Sbjct: 120 QICVEPTSQKLMPGSTLVLQCVAVGS--PIPHYQWFKN 155
Score = 28.7 bits (64), Expect = 0.80
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+I P + G + L C + P W
Sbjct: 20 KITVNPESKAVLAGQFVKLCCRA--TGHPFVQYQWFKM 55
Score = 28.3 bits (63), Expect = 0.99
Identities = 5/26 (19%), Positives = 6/26 (23%)
Query: 36 PQNEDWTLQIKYPQKRDSGIYECQVS 61
+ Y G Y C V
Sbjct: 160 THETKKLYMVPYVDLEHQGTYWCHVY 185
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 47.7 bits (113), Expect = 4e-07
Identities = 9/111 (8%), Positives = 23/111 (20%), Gaps = 20/111 (18%)
Query: 25 TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS-------------------TTPP 65
++ + ++ Q D G Y Q+
Sbjct: 150 FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKE 209
Query: 66 IGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ + + + + L C + + I W +
Sbjct: 210 AEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIK-KETHIVWYKD 259
Score = 41.9 bits (98), Expect = 4e-05
Identities = 11/105 (10%), Positives = 26/105 (24%), Gaps = 16/105 (15%)
Query: 25 TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS-------------TTPPIGISMY 71
R + + + K D GIY C V+ +++
Sbjct: 44 EDSPRL--EVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALS 101
Query: 72 LSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
P + + I + + + + ++ N
Sbjct: 102 HEHKFPTVPVKSELAVEILEKGQVRFWMQAEKL-SGNAKVNYIFN 145
Score = 29.2 bits (65), Expect = 0.66
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 34 HKPQNEDWTLQIKYPQKRDSGIYECQVS 61
H ++ TL I K+D+GIYE +
Sbjct: 269 HDFKDGICTLLITEFSKKDAGIYEVILK 296
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 47.8 bits (113), Expect = 4e-07
Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 11/139 (7%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVV---EPITQIIGGP--DMYINKGSTMN 96
I +G+ C+ S+ VV I ++ P + ++ G +
Sbjct: 184 GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLV 243
Query: 97 LTCVIKHSPEPPPAIYWLHN-TEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEA 155
L C + W + ++ L+ R+ ++ S + L +++I +T +
Sbjct: 244 LNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG 303
Query: 156 TYI-----LAGTYTNSFNL 169
Y T NS +
Sbjct: 304 LYTCAASSGLMTKKNSTFV 322
Score = 47.8 bits (113), Expect = 4e-07
Identities = 20/135 (14%), Positives = 38/135 (28%), Gaps = 19/135 (14%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGI---SMYLSVVEPITQIIGGPDMYINKGSTMNLT 98
+ S +Y+C+ +G + V +I PDM + +++L
Sbjct: 514 VSTLVIQAANVSALYKCEAVN--KVGRGERVISFHVTRG-PEITLQPDMQPTEQESVSLW 570
Query: 99 CVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYI 158
C S + W Q + + K L L ++ + I
Sbjct: 571 CTADRS--TFENLTWYKLG--PQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626
Query: 159 L---------AGTYT 164
+ G Y
Sbjct: 627 MELKNASLQDQGDYV 641
Score = 47.8 bits (113), Expect = 4e-07
Identities = 15/117 (12%), Positives = 34/117 (29%), Gaps = 7/117 (5%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQV---- 60
Q + ++ + N+ +++K +D G Y C
Sbjct: 589 QPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRK 648
Query: 61 -STTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ + + T + + G ++ ++C PPP I W +
Sbjct: 649 TKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASG--NPPPQIMWFKD 703
Score = 47.4 bits (112), Expect = 6e-07
Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 13/118 (11%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+W D + + + TL I + D G+Y C S+
Sbjct: 257 DFNWEYPS---SKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS-- 311
Query: 65 PIG---ISMYLSVVEPITQIIG---GPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ S ++ V E G + G + + PPP I W N
Sbjct: 312 GLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKY--LGYPPPEIKWYKN 367
Score = 42.8 bits (100), Expect = 2e-05
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 42 TLQIKYPQKRDSGIYECQVS---TTPPIGISMYLSVVEP---ITQIIGGPDMYINKGSTM 95
L I +RD+G Y ++ + + L V P + + P G+T
Sbjct: 382 VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQ 441
Query: 96 NLTCVIKHSPEPPPAIYWLHNTE 118
LTC + P PP I+W E
Sbjct: 442 TLTCTVYAIP-PPHHIHWYWQLE 463
Score = 42.4 bits (99), Expect = 2e-05
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 6/89 (6%)
Query: 52 DSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAI 111
++ C T + + ++ I + I +T+ +TC +
Sbjct: 8 AVALWLCVE--TRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITC----RGQRDLDW 61
Query: 112 YWLHNTEVSQLNLMQRESESSSFVKRLVV 140
W +N S+ + E F K L +
Sbjct: 62 LWPNNQSGSEQRVEVTECSDGLFCKTLTI 90
Score = 42.1 bits (98), Expect = 4e-05
Identities = 18/117 (15%), Positives = 32/117 (27%), Gaps = 14/117 (11%)
Query: 6 ISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP- 64
+ W+ + C TL I D+G Y+C T
Sbjct: 59 LDWLWPNNQSGSEQRVEVTECSDGLFCK--------TLTIPKVIGNDTGAYKCFYRETDL 110
Query: 65 PIGISMYLSV-----VEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
I +Y+ + ++ G + NK T+ + C+ S
Sbjct: 111 ASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPE 167
Score = 31.7 bits (71), Expect = 0.12
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 18/77 (23%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63
QI W +D L D + L I+ +K D G+Y CQ +
Sbjct: 696 PQIMW--FKDNETLVEDSGIVLKD-----------GNRNLTIRRVRKEDEGLYTCQACS- 741
Query: 64 PPIGI---SMYLSVVEP 77
+G + +
Sbjct: 742 -VLGCAKVEAFFIIEGA 757
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 46.7 bits (111), Expect = 5e-07
Identities = 25/106 (23%), Positives = 36/106 (33%), Gaps = 23/106 (21%)
Query: 26 SDQRFSCIHKPQNEDWTLQI-KYPQKRDSGIYEC-------QVSTTPPIGISMYLSVVEP 77
S+QRF I L+I RD IYEC ++S S L+V+
Sbjct: 48 SNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISV------STRLTVLRE 101
Query: 78 ITQIIGGP-------DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
G P + + T + C + P P I W +
Sbjct: 102 DQIPRGFPTIDMGPQLKVVERTRTATMLCAASGN--PDPEITWFKD 145
Score = 32.1 bits (73), Expect = 0.050
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 14/77 (18%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+I+W +D + TS+ LQI+ ++ D G YEC +
Sbjct: 139 EITW--FKDFLPVD------TSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATN-- 188
Query: 65 PIGI----SMYLSVVEP 77
G L V
Sbjct: 189 SAGTRYSAPANLYVRGT 205
Score = 27.9 bits (62), Expect = 1.6
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
D G + C + +P P I W
Sbjct: 15 DQTGVSGGVASFICQA--TGDPRPKIVWNKK 43
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 47.2 bits (112), Expect = 5e-07
Identities = 24/114 (21%), Positives = 35/114 (30%), Gaps = 26/114 (22%)
Query: 25 TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS---------------------TT 63
R E LQI P D G Y ++
Sbjct: 150 RYSDRVKTGV--TGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE 207
Query: 64 PPIGISMYLSVVEPITQIIGGPD-MYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
++ + G PD + I +G +NLTC + +PPP + WL N
Sbjct: 208 FQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKN 259
Score = 46.1 bits (109), Expect = 1e-06
Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 26/123 (21%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
I W + + D++ H ++ TL I K+D+GIYE +
Sbjct: 38 HIVWYKD---------EREISVDEK----HDFKDGICTLLITEFSKKDAGIYEVILKD-- 82
Query: 65 PIG---ISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSP--------EPPPAIYW 113
G + L ++ + + + + + W
Sbjct: 83 DRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNW 142
Query: 114 LHN 116
HN
Sbjct: 143 SHN 145
Score = 34.9 bits (80), Expect = 0.009
Identities = 12/56 (21%), Positives = 15/56 (26%), Gaps = 6/56 (10%)
Query: 25 TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVVEP 77
SD + + I DSG Y V G +SV P
Sbjct: 264 ASDDHCN-LKFEAGRTAYFTINGVSTADSGKYGLVVKN--KYGSETSDFTVSVFIP 316
Score = 31.0 bits (70), Expect = 0.17
Identities = 4/37 (10%), Positives = 10/37 (27%), Gaps = 1/37 (2%)
Query: 80 QIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ + + L C + + I W +
Sbjct: 9 HFVEYLSWEVTGECNVLLKCKVANIK-KETHIVWYKD 44
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 46.6 bits (110), Expect = 7e-07
Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 35 KPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGST 94
+N+ + + +G Y C S + S+Y+ V +P + G ++ + S
Sbjct: 51 MVENKKNEWIQEKAEATRTGTYTCSNSNG--LTSSIYVFVRDPAKLFLVGLPLFGKEDSD 108
Query: 95 MNLTCVIKHSPEPPPAIYWLHN 116
+ C + +
Sbjct: 109 ALVRCPLTDP--QVSQYSLIEC 128
Score = 40.9 bits (95), Expect = 8e-05
Identities = 16/154 (10%), Positives = 32/154 (20%), Gaps = 19/154 (12%)
Query: 3 LAQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62
++Q S + L T + + I + C
Sbjct: 120 VSQYSLIECDGKSLPTDLTFVPNPKAGIT-IKNVKRAY-----------HRLCVRCAAQR 167
Query: 63 TPPIGISMYLSVV------EPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
S ++ + + KG T + C I WL
Sbjct: 168 DGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTI-KDVSTSVNSMWLKM 226
Query: 117 TEVSQLNLMQRESESSSFVKRLVVLLSVSIVELT 150
Q + + +++I
Sbjct: 227 NPQPQHIAQVKHNSWHRGDFNYERQETLTISSAR 260
Score = 32.0 bits (72), Expect = 0.072
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63
W++ ++ + S R ++ Q TL I + DSG++ C +
Sbjct: 219 VNSMWLKMNP-QPQHIAQVKHNSWHRGDFNYERQE---TLTISSARVDDSGVFMCYANN- 273
Query: 64 PPIG---ISMYLSVVE 76
G ++ L VVE
Sbjct: 274 -TFGSANVTTTLKVVE 288
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 46.3 bits (110), Expect = 7e-07
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTP--PIGISMYLSVVEPITQIIGGP-DMYINKGSTMNLT 98
L I + D GIY C + + L V +I P ++ I +G L
Sbjct: 63 LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK-PKITRPPINVKIIEGLKAVLP 121
Query: 99 CVIKHSPEPPPAIYWLHNTEVSQLN 123
C + P P++ W+ + N
Sbjct: 122 CTTMGN--PKPSVSWIKGDSALREN 144
Score = 29.7 bits (67), Expect = 0.35
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 14/57 (24%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+SW + L + R + E +L+I QK D+G Y C
Sbjct: 131 SVSW--IKGDSALRENS-------RIA-----VLESGSLRIHNVQKEDAGQYRCVAK 173
Score = 27.4 bits (61), Expect = 2.1
Identities = 7/38 (18%), Positives = 9/38 (23%), Gaps = 3/38 (7%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
I + C + P P I W N
Sbjct: 9 VITTPLETVDALVEEVATFMCAV--ESYPQPEISWTRN 44
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 46.3 bits (109), Expect = 7e-07
Identities = 11/109 (10%), Positives = 32/109 (29%), Gaps = 2/109 (1%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTP-PIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCV 100
TL + + Y C + + + + + + G + + C
Sbjct: 55 TLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCS 114
Query: 101 IKHS-PEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVE 148
+ P I L + + +++ S + + + ++E
Sbjct: 115 VADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIE 163
Score = 26.7 bits (58), Expect = 4.1
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSF 134
G +++LTC P W + + E +S+
Sbjct: 9 SRYLAQIGDSVSLTCSTTGC--ESPFFSWRTQIDSPLNGKVTNEGTTSTL 56
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 46.4 bits (110), Expect = 7e-07
Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 5/103 (4%)
Query: 35 KPQNEDWTLQIKYPQKRDSGIYECQVS-TTPPIGISMYLSVVEPIT--QIIGGPDMYINK 91
K + + L I +G Y C + ++V E + + +
Sbjct: 125 KFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLE 184
Query: 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSF 134
G+ + L+C K + P L+ + ++ + SS +
Sbjct: 185 GNLVTLSCETKLLLQRPG--LQLYFSFYMGSKTLRGRNTSSEY 225
Score = 46.1 bits (109), Expect = 1e-06
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVI 101
+ +I DSG Y CQ + + L + ++ +G + L C
Sbjct: 49 SYRITSASVNDSGEYRCQRGLSGR-SDPIQLEIHRGWL-LLQVSSRVFTEGEPLALRCHA 106
Query: 102 KHSPEPPPAIYWLHN 116
+ + N
Sbjct: 107 WKDK-LVYNVLYYRN 120
Score = 31.0 bits (70), Expect = 0.15
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
P + + + T+ L C + H P + W N
Sbjct: 9 PWVSVFQEETVTLHCEVLHLP-GSSSTQWFLN 39
Score = 28.7 bits (64), Expect = 0.91
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 35 KPQNEDWTLQIKYPQKRDSGIYECQVST 62
+ +N QI ++ DSG+Y C+ +T
Sbjct: 217 RGRNTSSEYQILTARREDSGLYWCEAAT 244
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 46.6 bits (110), Expect = 9e-07
Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 23/120 (19%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS--- 61
+I W ++D LL + S + + L + D+G Y C ++
Sbjct: 156 KIQW--YKDSLLLDKDNEKFLSVRGTT----------HLLVHDVALEDAGYYRCVLTFAH 203
Query: 62 --TTPPIGISMYLSVVEPIT----QIIGGP-DMYINKGSTMNLTC-VIKHSPEPPPAIYW 113
I S+ L + + II + + GS + + C V + P + W
Sbjct: 204 EGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLW 263
Score = 41.6 bits (97), Expect = 5e-05
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 37 QNEDWTLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVVEPITQIIGGP--DMYINK 91
+D L + + DSG Y C +S+ L V E + +
Sbjct: 77 WAQDGALWLLPALQEDSGTYVCTTRN--ASYCDKMSIELRVFENTDAFLPFISYPQILTL 134
Query: 92 GSTMNLTCVIKH---SPEPPPAIYWLHNTE 118
++ L C + I W ++
Sbjct: 135 STSGVLVCPDLSEFTRDKTDVKIQWYKDSL 164
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 46.6 bits (110), Expect = 9e-07
Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 17/129 (13%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVVEP---ITQIIGGPDMYINKGSTM 95
TL I + DSG++ C + G ++ L VV+ + +++N G +
Sbjct: 274 TLTISSARVNDSGVFMCYANN--TFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENV 331
Query: 96 NLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEA 155
+L + P P W++ + R V L ++
Sbjct: 332 DLIVEYEAFP-KPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLT--------RL 382
Query: 156 TYILAGTYT 164
GTYT
Sbjct: 383 KGTEGGTYT 391
Score = 45.8 bits (108), Expect = 2e-06
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVI 101
+ + ++G Y C + S+Y+ V +P + +Y + + + C +
Sbjct: 81 EWITEKAEATNTGKYTCTNKHG--LSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPL 138
Query: 102 KHSPEPPPAIYWLHNTEVSQL 122
+P Y L + L
Sbjct: 139 ---TDPEVTNYSLKGCQGKPL 156
Score = 43.9 bits (103), Expect = 7e-06
Identities = 19/127 (14%), Positives = 33/127 (25%), Gaps = 16/127 (12%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVVEPITQIIGGP-DMYINKGSTMNL 97
L + + + G Y VS I+ + V P + ++ L
Sbjct: 376 ELHLTRLKGTEGGTYTFLVSN--SDVNAAIAFNVYVNTK-------PEILTYDRLVNGML 426
Query: 98 TCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATY 157
CV P P I W Q + +V+ + + +
Sbjct: 427 QCVAAGF--PEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSID-SSAF 483
Query: 158 ILAGTYT 164
GT
Sbjct: 484 KHNGTVE 490
Score = 40.8 bits (95), Expect = 8e-05
Identities = 17/169 (10%), Positives = 35/169 (20%), Gaps = 27/169 (15%)
Query: 2 SLAQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+ S + L + I + C V
Sbjct: 142 EVTNYSLKGCQGKPLPKDLRFIPDPKAGIM-IKSVKRAY-----------HRLCLHCSVD 189
Query: 62 ------TTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLH 115
+ + + + + + +G +TC IK W
Sbjct: 190 QEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVS-SSVYSTWKR 248
Query: 116 NTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAGTYT 164
++L F L++S A +G +
Sbjct: 249 ENSQTKLQEKYNSWHHGDFNYERQATLTIS--------SARVNDSGVFM 289
Score = 33.5 bits (76), Expect = 0.028
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 11/71 (15%)
Query: 51 RDSGIYECQV-----STTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSP 105
R + + C + T S+ P + G D+ + G + L C
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLC------ 58
Query: 106 EPPPAIYWLHN 116
P + W
Sbjct: 59 TDPGFVKWTFE 69
Score = 29.6 bits (66), Expect = 0.47
Identities = 10/78 (12%), Positives = 16/78 (20%), Gaps = 8/78 (10%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWT--LQIKYPQKRDSGIYECQVST 62
I W S D + P I + +G EC+
Sbjct: 437 TIDWYFCPGTEQRC-SASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYN 495
Query: 63 TPPIG---ISMYLSVVEP 77
+G +
Sbjct: 496 D--VGKTSAYFNFAFKGN 511
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 45.8 bits (109), Expect = 9e-07
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 20/105 (19%)
Query: 25 TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYEC-------QVSTTPPIGISMYLSVVEP 77
+++ TL + ++ D G+Y C +V T S L +
Sbjct: 49 IQSRKYKMSSD--GRTHTLTVMTEEQEDEGVYTCIATNEVGEVET------SSKLLLQAT 100
Query: 78 ---ITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119
Y GST+ L + P PA+ W H ++
Sbjct: 101 PQFHPGYPLKEKYYGAVGSTLRLHVMY--IGRPVPAMTWFHGQKL 143
Score = 30.4 bits (69), Expect = 0.19
Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
I D+ G L+C I P P I W
Sbjct: 9 GIRKEMKDVTTKLGEAAQLSCQI--VGRPLPDIKWYRF 44
Score = 26.6 bits (59), Expect = 3.5
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 19/77 (24%)
Query: 5 QISWVRHRDIHLLTVSG-YTYTSDQRFSCIHKPQNEDWTLQIKYPQKR-DSGIYECQVST 62
++W LL S T + + ++ L +K Q++ +G Y+ Q+S
Sbjct: 134 AMTW--FHGQKLLQNSENITIENTEHYT----------HLVMKNVQRKTHAGKYKVQLSN 181
Query: 63 TPPIGI---SMYLSVVE 76
G + + + +
Sbjct: 182 --VFGTVDAILDVEIQD 196
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 46.0 bits (108), Expect = 9e-07
Identities = 16/85 (18%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Query: 38 NEDWTLQIKYPQKRDSGIYECQVSTTPP--IGISMYLSVV----EPITQIIGGPDMYINK 91
+ L + Q D Y C V + L+V G +
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMED 133
Query: 92 GSTMNLTCVIKHSPEPPPAIYWLHN 116
+ TC ++ P P I W N
Sbjct: 134 SAQEIATCNSRNG-NPAPKITWYRN 157
Score = 28.2 bits (62), Expect = 1.2
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWT----LQIKYPQKRDSGIYECQ 59
+I+W +R+ L V S + + + L ++ + + C
Sbjct: 150 PKITW--YRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCA 207
Query: 60 VSTTPPIG 67
+ P G
Sbjct: 208 AHYSLPEG 215
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 45.6 bits (108), Expect = 1e-06
Identities = 24/114 (21%), Positives = 35/114 (30%), Gaps = 26/114 (22%)
Query: 25 TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS---------------------TT 63
R E LQI P D G Y ++
Sbjct: 45 RYSDRVKTGV--TGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE 102
Query: 64 PPIGISMYLSVVEPITQIIGGPD-MYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
++ + G PD + I +G +NLTC + +PPP + WL N
Sbjct: 103 FQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKN 154
Score = 34.1 bits (78), Expect = 0.010
Identities = 10/56 (17%), Positives = 13/56 (23%), Gaps = 6/56 (10%)
Query: 25 TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVVEP 77
+ + I DSG Y V G +SV P
Sbjct: 159 AQTDHCN-LKFEAGRTAYFTINGVSTADSGKYGLVVKN--KYGSETSDFTVSVFIP 211
Score = 28.7 bits (64), Expect = 0.71
Identities = 4/27 (14%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 90 NKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ + L + + + W HN
Sbjct: 15 STAEGIQLYSFVTYYV-EDLKVNWSHN 40
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 45.0 bits (106), Expect = 1e-06
Identities = 23/109 (21%), Positives = 31/109 (28%), Gaps = 9/109 (8%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVI 101
+ K G Y C P + + + P +IN+G T L C
Sbjct: 50 KTEFKVDSDDQWGEYSCVF--LPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKS 107
Query: 102 KHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELT 150
+ P P W T+ LM R V S EL
Sbjct: 108 ESVP-PVTDWAWYKITDSEDKALMNGSES------RFFVSSSQGRSELH 149
Score = 33.5 bits (76), Expect = 0.019
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 90 NKGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119
+ GS + LTC + S WL V
Sbjct: 11 DLGSKILLTCSLNDSATEVTGHRWLKGGVV 40
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 44.9 bits (106), Expect = 2e-06
Identities = 15/132 (11%), Positives = 34/132 (25%), Gaps = 29/132 (21%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQV--- 60
A+++++ + ++ + ++ Q D G Y Q+
Sbjct: 33 AKVNYIFN---------EKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG 83
Query: 61 -----STTPPIGISMYLSVVEPITQ-----------IIGGPDMYINKGSTMNLTCVIKHS 104
ST +G E Q + + + L C + +
Sbjct: 84 KATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANI 143
Query: 105 PEPPPAIYWLHN 116
I W +
Sbjct: 144 K-KETHIVWYKD 154
Score = 34.5 bits (79), Expect = 0.009
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 13/58 (22%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
I W ++D ++V H ++ TL I K+D+GIYE +
Sbjct: 147 THIVW--YKDEREISVDEK-----------HDFKDGICTLLITEFSKKDAGIYEVILK 191
Score = 26.8 bits (59), Expect = 3.4
Identities = 5/26 (19%), Positives = 8/26 (30%), Gaps = 2/26 (7%)
Query: 91 KGSTMNLTCVIKHSPEPPPAIYWLHN 116
KG K S + ++ N
Sbjct: 17 KGQVRFWMQAEKLSG--NAKVNYIFN 40
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 44.0 bits (104), Expect = 3e-06
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVI 101
DSG Y CQ T + ++L+ V ++ P + +G T+ L C
Sbjct: 52 PSYRFKANNNDSGEYTCQTGQT-SLSDPVHLT-VLFEWLVLQTPHLEFQEGETIMLRCHS 109
Query: 102 KHSPEPPPAIYWLHN 116
P + + N
Sbjct: 110 WKDK-PLVKVTFFQN 123
Score = 29.4 bits (66), Expect = 0.40
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
P + + + ++ LTC SP +I W HN
Sbjct: 12 PWINVLQEDSVTLTCQGARSP-ESDSIQWFHN 42
Score = 25.5 bits (56), Expect = 8.8
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 35 KPQNEDWTLQIKYPQKRDSGIYECQVS 61
K + D T I SG Y C +
Sbjct: 128 KFSHLDPTFSIPQANHSHSGDYHCTGN 154
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 44.5 bits (105), Expect = 3e-06
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 13/86 (15%)
Query: 42 TLQIKYPQKRDSGIYECQVST--TPPIGISMYLSVV---------EPITQIIGGPDMYIN 90
L I + D G Y C VS+ S ++ ++ P ++ D+Y
Sbjct: 67 NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126
Query: 91 KGSTMNLTCVIKHSPEPPPAIYWLHN 116
G + L C P P I W
Sbjct: 127 MGQNVTLECFA--LGNPVPDIRWRKV 150
Score = 31.8 bits (72), Expect = 0.060
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
P++ + +G M L C + + WL N
Sbjct: 16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLN 47
Score = 30.6 bits (69), Expect = 0.19
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 15/57 (26%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
I W + + + + TS L+I Q D GIYEC+
Sbjct: 144 DIRW--RKVLEPMPSTAEISTSGA-------------VLKIFNIQLEDEGIYECEAE 185
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 43.4 bits (102), Expect = 5e-06
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 9/117 (7%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
++ W + + + + + + F +L I D YE +
Sbjct: 25 EVLW-KKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT 83
Query: 65 PIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQ 121
+ +L V+E +++ P +Y S LTC + + E +
Sbjct: 84 DT-MKFFLYVLEMVSK----PMIYWE-CSNATLTCEVLEG--TDVELKLYQGKEHLR 132
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 43.3 bits (102), Expect = 6e-06
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSV-VEPITQIIGGPDMYINKGSTMNLTCV 100
+L I + DSG Y+CQ S + + V ++ + +G + L C
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQVN---ESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCH 108
Query: 101 IKHSPEPPPAIYWLHN 116
+ + + +
Sbjct: 109 GWRNW-DVYKVIYYKD 123
Score = 31.0 bits (70), Expect = 0.13
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 81 IIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ P I KG + LTC + + W HN
Sbjct: 8 SLNPPWNRIFKGENVTLTCNGNNFF-EVSSTKWFHN 42
Score = 26.0 bits (57), Expect = 5.4
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 35 KPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGIS--MYLSVVEP 77
K E+ + I DSG Y C S + ++V++
Sbjct: 128 KYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKA 172
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 43.4 bits (102), Expect = 7e-06
Identities = 25/137 (18%), Positives = 40/137 (29%), Gaps = 14/137 (10%)
Query: 6 ISWVRHRDIHLLTVSGYTYTSDQ---RFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62
I W + + + L +SG + R + ++ I + D G YEC V
Sbjct: 30 IYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT---NNLSIVILALRPSDEGTYECVVLK 86
Query: 63 TPP------IGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ LSV D I + + C P P + WL N
Sbjct: 87 YEKDAFKREHLAEVTLSVKADFPTPS-ISDFEIPTSNIRRIICSTSGG-FPEPHLSWLEN 144
Query: 117 TEVSQLNLMQRESESSS 133
E + +
Sbjct: 145 GEELNAINTTVSQDPET 161
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 43.5 bits (102), Expect = 7e-06
Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 11/123 (8%)
Query: 2 SLAQISWVRHRDIHLLT-VSGYTYTSDQRFSCIHKPQNEDW----TLQIKYPQKRDSGIY 56
+L +W + + ++ + S+ F+ E +L + +D G+Y
Sbjct: 27 ALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVY 86
Query: 57 ECQVSTTPPIGISMYLSVV---EPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYW 113
++ + + + + + ++ LTC S + I W
Sbjct: 87 TLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC---LSNDIGANIQW 143
Query: 114 LHN 116
L N
Sbjct: 144 LFN 146
Score = 27.3 bits (60), Expect = 2.4
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 15/76 (19%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63
A I W+ + L T + + L+I ++ D+G Y+C++S
Sbjct: 139 ANIQWLFNSQ-SLQLTERMTLSQNNS------------ILRIDPIKREDAGEYQCEISNP 185
Query: 64 PPIGIS--MYLSVVEP 77
+ S + L ++
Sbjct: 186 VSVRRSNSIKLDIIFD 201
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 42.4 bits (99), Expect = 2e-05
Identities = 14/119 (11%), Positives = 32/119 (26%), Gaps = 6/119 (5%)
Query: 35 KPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVV----EPITQIIGGPDMYIN 90
+ Q + + Y C+ + S V I + +
Sbjct: 135 VALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVR 194
Query: 91 KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVEL 149
+G + L C++ + W + + S + + +L + EL
Sbjct: 195 QGENITLMCIVIGN--EVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAEL 251
Score = 42.0 bits (98), Expect = 3e-05
Identities = 11/109 (10%), Positives = 31/109 (28%), Gaps = 11/109 (10%)
Query: 31 SCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPI----GISMYLSVVEP----ITQII 82
+ L + D+G Y C + + + +Y+ V +P +
Sbjct: 41 MAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDA 100
Query: 83 GGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESES 131
+++ + + + + C + P + L +
Sbjct: 101 EELFIFLTEITEITIPCRVTD---PQLVVTLHEKKGDVALPVPYDHQRG 146
Score = 29.7 bits (66), Expect = 0.44
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 11/78 (14%)
Query: 4 AQISWVR-HRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62
W ++ L + D + L I + DSG Y C V+
Sbjct: 211 VNFEWTYPRKESGRLVEPVTDFLLDMPYHIRS-------ILHIPSAELEDSGTYTCNVTE 263
Query: 63 ---TPPIGISMYLSVVEP 77
++ ++VVE
Sbjct: 264 SVNDHQDEKAINITVVES 281
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 41.9 bits (98), Expect = 2e-05
Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 20/139 (14%)
Query: 2 SLAQISWVRHRD-IHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQV 60
+ ++ W R + + F + L+IK + DSG Y V
Sbjct: 26 DIDEVRWERGSTLVAEFKRKMKPFLKSGAFE-----ILANGDLKIKNLTRDDSGTYNVTV 80
Query: 61 ST---TPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN- 116
+ T + ++ L ++E +++ P +Y S LTC + +
Sbjct: 81 YSTNGTRILNKALDLRILEMVSK----PMIYWE-CSNATLTCEVLEG--TDVELKLYQGK 133
Query: 117 ---TEVSQLNLMQRESESS 132
+ Q + + +
Sbjct: 134 EHLRSLRQKTMSYQWTNLR 152
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 41.8 bits (98), Expect = 2e-05
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVI 101
+ I DSG Y CQ + + + + L V ++ P + ++L C
Sbjct: 55 SYFIDAATVNDSGEYRCQTNLS-TLSDPVQLEVHIG-WLLLQAPRWVFKEEDPIHLRCHS 112
Query: 102 KHSPEPPPAIYWLHN 116
+ + +L N
Sbjct: 113 WKNT-ALHKVTYLQN 126
Score = 26.4 bits (58), Expect = 4.8
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 89 INKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ + ++ L C +SPE W HN
Sbjct: 19 VLEKDSVTLKCQGAYSPEDNS-TQWFHN 45
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 41.7 bits (98), Expect = 2e-05
Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 15/103 (14%)
Query: 34 HKPQNEDWTLQI----KYPQKRDSGIYECQVSTT--PPIGISMYLSVVEPITQIIGGP-- 85
+ + + I RD YEC + L++ E G P
Sbjct: 54 YTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVI 113
Query: 86 -----DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLN 123
I G T+ +TC +P P IYW+ N ++
Sbjct: 114 TQGPGTRVIEVGHTVLMTCKAIGNP--TPNIYWIKNQTKVDMS 154
Score = 33.2 bits (76), Expect = 0.021
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 20/77 (25%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
I W ++ + +S Y+ +D LQI+ ++ D G YEC
Sbjct: 141 NIYW--IKNQTKVDMSNPRYSL------------KDGFLQIENSREEDQGKYECVAEN-- 184
Query: 65 PIGI----SMYLSVVEP 77
+G + L V
Sbjct: 185 SMGTEHSKATNLYVKVR 201
Score = 29.0 bits (65), Expect = 0.56
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 73 SVVEP--ITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ P I + + + G + C +PPP+I W N
Sbjct: 2 TGAHPPEIIRKPQ--NQGVRVGGVASFYCAA--RGDPPPSIVWRKN 43
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 40.7 bits (95), Expect = 3e-05
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 2 SLAQISWVRHRDIHLLT-VSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQV 60
+ Q++W D ++ S + + +F + + L I QK D+ Y +V
Sbjct: 33 NYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRV 92
Query: 61 STTPPIGISMY--LSVVEPITQIIGGPDMYINK 91
L V++P+ + P + I K
Sbjct: 93 LKKTGNEQEWKIKLQVLDPVPK----PVIKIEK 121
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 40.3 bits (94), Expect = 4e-05
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQ-----------RFSCIHKPQNEDWTLQIKYPQKRDS 53
+W + +S + Y Q R + P +D ++ I D+
Sbjct: 34 SFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDN 93
Query: 54 GIYECQVSTTPPIG 67
G + C V P I
Sbjct: 94 GTFTCDVKNPPDIV 107
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 41.4 bits (97), Expect = 4e-05
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVI 101
+ I DSG Y CQ + + L V ++ P + ++L C
Sbjct: 55 SYFIDAATVDDSGEYRCQTQLSTL-SDPVQLEVHIGWL-LLQAPRWVFKEEDPIHLRCHS 112
Query: 102 KHSPEPPPAIYWLHN 116
+ + +L N
Sbjct: 113 WKNT-ALHKVTYLQN 126
Score = 26.8 bits (59), Expect = 3.2
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 35 KPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGIS--MYLSVVEPIT 79
K + + I +DSG Y C+ S + +++ + +
Sbjct: 131 KYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177
Score = 26.0 bits (57), Expect = 5.6
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 89 INKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ + ++ L C +SPE W HN
Sbjct: 19 VLEKDSVTLKCQGAYSPEDQS-TQWFHN 45
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 41.2 bits (96), Expect = 5e-05
Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 6/126 (4%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIH-KPQNEDWTLQIKYPQKRDSGIYECQVST 62
++ +R L V T +R + + + I Q RDSG Y C V
Sbjct: 32 TELEGIR---ASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVIC 88
Query: 63 TPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQL 122
V+ I + + + LTC + P + W + + +
Sbjct: 89 GAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPL--AEVSWQNVSVPANT 146
Query: 123 NLMQRE 128
+ ++
Sbjct: 147 SHIRTP 152
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 39.5 bits (92), Expect = 7e-05
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 2 SLAQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+ Q++W + + + + + F P L ++ D+G Y C
Sbjct: 33 QVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP-GPGLGLTLQSLTVNDTGEYFCIYH 91
Query: 62 TTP--PIGISMYLSVVEP 77
T P ++L V+E
Sbjct: 92 TYPDGTYTGRIFLEVLES 109
Score = 32.2 bits (73), Expect = 0.030
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Query: 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTE-VSQLNLMQRESESSSFVKRLVVL-- 141
++ KG ++ L C + + + W + ++ N S SF R+
Sbjct: 11 GNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPG 70
Query: 142 LSVSIVELTWKLEATYIL------AGTYTNSFNL 169
L +++ LT Y GTYT L
Sbjct: 71 LGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFL 104
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 39.5 bits (92), Expect = 2e-04
Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 4/97 (4%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTP--PIGISMYLSVVEPITQIIGGP-DMYINKGSTMNLT 98
++ +++D G Y C + L + P D + KG T L
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLE 129
Query: 99 CVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFV 135
C P P + W+ + SS
Sbjct: 130 CG-PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVR 165
Score = 33.3 bits (76), Expect = 0.025
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 71 YLSVVEPITQIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
L+ +II P D+ + K L C ++ +P P I W +
Sbjct: 2 PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEG--KPEPTIEWFKD 46
Score = 32.9 bits (75), Expect = 0.034
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 6/58 (10%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+ W++ L + ++ + R + L I + D G Y+C
Sbjct: 139 PTLIWIKDGVP-LDDLKAMSFGASSRVR-----IVDGGNLLISNVEPIDEGNYKCIAQ 190
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 38.4 bits (89), Expect = 2e-04
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 20 SGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVVE 76
TY R++ D +L I+ + DSG+Y C+V ++ L V
Sbjct: 52 HRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKP 111
Query: 77 PIT 79
+
Sbjct: 112 ELV 114
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 39.3 bits (91), Expect = 2e-04
Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 2/106 (1%)
Query: 40 DWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTC 99
L+I DSG Y C + + D+ K ++L C
Sbjct: 82 KAALRIHNVTASDSGKYLCYFQDGDFYE-KALVELKVAALGSDLHVDVKGYKDGGIHLEC 140
Query: 100 VIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVS 145
P P I W +N + + + + + +
Sbjct: 141 RS-TGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMR 185
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 37.5 bits (87), Expect = 3e-04
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKP-------QNEDWTLQIKYPQKRDSGIYE 57
+I+W+ ++ +L Y + + + + L I +K D G Y
Sbjct: 35 RITWLHTKNQKILE-----YNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYY 89
Query: 58 CQVSTTPPIGISMYLSVVEPI 78
+V + + L V +P+
Sbjct: 90 MRVLRETENELKITLEVFDPV 110
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 37.6 bits (87), Expect = 3e-04
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 23 TYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQV 60
TY R+ D +L IK D G Y C++
Sbjct: 54 TYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRI 91
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 38.6 bits (90), Expect = 3e-04
Identities = 20/122 (16%), Positives = 32/122 (26%), Gaps = 18/122 (14%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQI-----KYPQKRDSGIYECQ 59
I W + G +D+ H+ +L + D G+Y C
Sbjct: 40 TIEWYK---------GGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCV 90
Query: 60 VSTT--PPIGISMYLSVVEPITQIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ L V P D+ + G + C P P I W +
Sbjct: 91 ARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRG-HPEPTISWKKD 149
Query: 117 TE 118
Sbjct: 150 GS 151
Score = 32.5 bits (74), Expect = 0.045
Identities = 18/84 (21%), Positives = 25/84 (29%), Gaps = 17/84 (20%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63
ISW +D L T L I Y +K D+G Y C +
Sbjct: 142 PTISW--KKDGSPLDDKDERITI------------RGGKLMITYTRKSDAGKYVCVGTNM 187
Query: 64 PPIGIS--MYLSVVEPITQIIGGP 85
S L+V+E +
Sbjct: 188 VGERESEVAELTVLER-PSFVKAA 210
Score = 30.2 bits (68), Expect = 0.23
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 8/79 (10%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVS 145
D+ ++KG L C P P I W E ++ + + S + L +
Sbjct: 18 DLIVSKGEPATLNCKA--EGRPTPTIEWYKGGE--RVETDKDDPRSHRMLLPSGSLFFLR 73
Query: 146 IVELTWKLEATYILAGTYT 164
IV G Y
Sbjct: 74 IVHGRKSRPD----EGVYV 88
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2;
beta barrel, immunoglobulin fold, IGV domain, TIM,
immune system; 1.50A {Mus musculus}
Length = 115
Score = 37.3 bits (86), Expect = 5e-04
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 23 TYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQV 60
T+ + R+ + +L I+ D G Y C V
Sbjct: 56 THQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVV 93
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 38.7 bits (89), Expect = 5e-04
Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 9/88 (10%)
Query: 36 PQNEDWTLQIKYPQKRDSGIYECQVS-----TTPPIGISMYLSVVEP--ITQIIGGPDMY 88
P L +K + + + C + + L V+ + + +
Sbjct: 322 PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWT 381
Query: 89 INKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ S C + P P + L +
Sbjct: 382 WPENSQQTPMCQAWGN--PLPELKCLKD 407
Score = 38.7 bits (89), Expect = 5e-04
Identities = 9/104 (8%), Positives = 27/104 (25%), Gaps = 3/104 (2%)
Query: 34 HKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP-IGISMYLSVVEPITQI-IGGPDMYINK 91
+ + ++ C + +L+V ++ + +
Sbjct: 41 ELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPV 100
Query: 92 GSTMNLTCVIKHS-PEPPPAIYWLHNTEVSQLNLMQRESESSSF 134
G + L C ++ P + L + + E +
Sbjct: 101 GKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTT 144
Score = 31.4 bits (70), Expect = 0.13
Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 11/103 (10%)
Query: 42 TLQIKYPQKRDSGIYECQVS-TTPPIGISMYLSVVEPITQIIGGP---------DMYINK 91
T + + + C+ P G+ ++ + P +
Sbjct: 143 TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEV 202
Query: 92 GSTMNLTCVIK-HSPEPPPAIYWLHNTEVSQLNLMQRESESSS 133
+ + C + P ++ + + S+
Sbjct: 203 DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA 245
Score = 31.4 bits (70), Expect = 0.15
Identities = 10/108 (9%), Positives = 27/108 (25%), Gaps = 8/108 (7%)
Query: 31 SCIHKPQNEDWTLQIKYPQKRDSGIYE--CQVSTTP-PIGISMYLSVVEPITQIIGGPDM 87
+ + D G C V +++ +
Sbjct: 234 PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKP 293
Query: 88 YINKGSTMNLTCVIKHSPEPPPAIYWLHNT---EVSQLNLMQRESESS 132
+++G+ + + C P + + +QL L ++
Sbjct: 294 EVSEGTEVTVKCEA--HPRAKVTLNGVPAQPLGPRAQLLLKATPEDNG 339
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 38.1 bits (88), Expect = 5e-04
Identities = 11/89 (12%), Positives = 25/89 (28%), Gaps = 9/89 (10%)
Query: 35 KPQNEDWTLQIKYPQKRDSGIYECQVS-----TTPPIGISMYLSVVEP--ITQIIGGPDM 87
+P L +K + + + C + + L V+ + + +
Sbjct: 136 QPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNW 195
Query: 88 YINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ S C P P + L +
Sbjct: 196 TWPENSQQTPMCQA--WGNPLPELKCLKD 222
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 36.5 bits (84), Expect = 6e-04
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+ W + + + L + G + + + L I Q +G Y C+VS
Sbjct: 38 VVKWFKGKWVDLSSKVGQHLQLHDSYD--RASKVYLFELHITDAQPAFTGSYRCEVS 92
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 36.9 bits (85), Expect = 7e-04
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 5 QISWVRHRDIHLLT-VSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63
+ L T + +++ + K Q + +L I + DSG+Y C++
Sbjct: 36 SCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVP 95
Query: 64 PP 65
Sbjct: 96 GW 97
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 35.7 bits (82), Expect = 0.002
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
I W + + + L + +G + F + + +QI + +G Y C+V+
Sbjct: 41 TIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT--FEMQIIKAKDNFAGNYRCEVT 95
Score = 28.0 bits (62), Expect = 0.91
Identities = 5/35 (14%), Positives = 9/35 (25%), Gaps = 1/35 (2%)
Query: 86 DMYINKGSTMNLTCVIKHSPEP-PPAIYWLHNTEV 119
+ G + +K P I W +
Sbjct: 16 GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWM 50
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain,
membrane, transmembrane, receptor; 1.60A {Mus musculus}
PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 35.4 bits (82), Expect = 0.002
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP 65
D RF I P D+ + I ++ DSGIY C + P
Sbjct: 59 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHP 97
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 35.3 bits (81), Expect = 0.002
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 69 SMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
S L+V P I + G + C I+ +P PP I W
Sbjct: 6 SGTLTVNGP-PIISSTQTQHALHGEKGQIKCFIRSTP-PPDRIAWSWK 51
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 35.0 bits (80), Expect = 0.003
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 18 TVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQV--STTPPIGISMYLSVV 75
+ T RF+ P +T+ + ++ DSG Y C++ + + S+ +V
Sbjct: 61 SSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLV 120
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 34.7 bits (79), Expect = 0.003
Identities = 11/80 (13%), Positives = 23/80 (28%), Gaps = 5/80 (6%)
Query: 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSV 144
+ ++ G + L C + W + + Q + + + LS
Sbjct: 16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75
Query: 145 SIVELTWKLEATYILAGTYT 164
++ T G YT
Sbjct: 76 LTID-----GVTRSDQGLYT 90
Score = 30.5 bits (68), Expect = 0.13
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+W H D + + + TL I + D G+Y C S+
Sbjct: 41 DFNWEYPSSKHQ---HKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 97
Query: 65 -PIGISMYLSVVEP 77
S ++ V E
Sbjct: 98 MTKKNSTFVRVHEK 111
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 34.7 bits (79), Expect = 0.004
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 75 VEPITQIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119
P QI P GS ++ TC S + P W + E
Sbjct: 7 DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEA 52
Score = 25.8 bits (56), Expect = 4.1
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 42 TLQIKYPQKRDSGIYECQVSTT 63
L+++ + G Y+C +S
Sbjct: 77 ILRLRNVEFTSEGXYQCVISNH 98
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 34.5 bits (79), Expect = 0.004
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 18 TVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP-IGISMYLSV 74
T R S +N +T+ ++ K D+ Y C + T +G+++ +++
Sbjct: 52 TSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTI 109
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 34.6 bits (79), Expect = 0.006
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKP--QNEDWTLQIKYPQKRDSGIYECQVS 61
+I W S + IH Q+ T+ I + D+G YEC+ S
Sbjct: 52 EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRAS 110
Score = 26.5 bits (58), Expect = 3.5
Identities = 7/31 (22%), Positives = 9/31 (29%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
G ++ L C P P I W
Sbjct: 30 SQQRWVGGSVELHCEA--VGSPVPEIQWWFE 58
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 34.1 bits (78), Expect = 0.006
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 5 QISWVR----HRDIHLLTVSGYTYTSDQ-RFSCIHKPQNEDWTLQIKYPQKRDSGIYECQ 59
+ W R I L++ GY + R + + P+N + + I + DSG Y+C
Sbjct: 34 RKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCG 93
Query: 60 VSTTPP-IGISMYLSVVE 76
+ + + L V+E
Sbjct: 94 LGINSRGLSFDVSLEVLE 111
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 34.2 bits (78), Expect = 0.006
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 1 MSLAQISWVRHRDIHLLTVSGYTYTSDQR---FSCIHKPQNEDWTLQIKYPQKRDSGIYE 57
+++ ++W R + V T R + + L I+ + D+ IY
Sbjct: 38 LAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYV 97
Query: 58 CQVSTT 63
C+V
Sbjct: 98 CRVEVL 103
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 33.9 bits (78), Expect = 0.006
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 72 LSVVEPITQIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
V II D+ + +GS+ C I + P ++W +
Sbjct: 7 GLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEP--VHWFLD 50
Score = 26.2 bits (58), Expect = 3.5
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 7/46 (15%)
Query: 42 TLQIKYPQKRDSGIYECQV--STTPPIGISMYLSVVEPITQIIGGP 85
L ++ +DSG + S L V E +
Sbjct: 71 VLTLRQLALKDSGTIYFEAGDQRA-----SAALRVTEKPSVFSRSG 111
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 34.1 bits (78), Expect = 0.006
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 40 DWTLQIKYPQKRDSGIYECQVSTTPPIGI-SMYLSVVEPITQIIGGPD 86
L+I+ + D G Y C ++ L V +P I G
Sbjct: 84 KVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINPGRS 131
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 34.0 bits (78), Expect = 0.007
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 28 QRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62
R + ++ L +K + DSG Y +
Sbjct: 66 GRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEI 100
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 34.5 bits (79), Expect = 0.007
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLS-----------VVEPITQIIGGPDMYIN 90
TL I+ Q DSG Y C T + VEP +Q P ++I
Sbjct: 72 TLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIM 131
Query: 91 KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSF 134
K T N+ C++K I + ++ + + S S +
Sbjct: 132 KNGT-NVACLVKDFYPKEVTISLRSSKKIVEFDPAIVISPSGKY 174
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 33.8 bits (77), Expect = 0.008
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 25 TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
++ Q + + +D TL + D G Y C+ +T P
Sbjct: 77 SAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFP 116
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 34.0 bits (78), Expect = 0.011
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 54 GIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYW 113
Y S P G MY P + G +Y +G+ +N+TC + P I W
Sbjct: 1 ATYAAASSALVPRGSHMY----APK--LQGPVAVYTWEGNQVNITCEVFA--YPSATISW 52
Query: 114 LHN 116
+
Sbjct: 53 FRD 55
Score = 32.5 bits (74), Expect = 0.036
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 5/39 (12%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVVEP 77
L++ + D G Y C IG + L +
Sbjct: 77 YLEVTPDSENDFGNYNCTAVN--RIGQESLEFILVQADT 113
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 32.7 bits (75), Expect = 0.012
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 81 IIGGP--DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
++ G +G + C I++ + W
Sbjct: 3 MVSGQIMHAVGEEGGHVKYVCKIENYD-QSTQVTWYFG 39
Score = 29.6 bits (67), Expect = 0.18
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 13/59 (22%)
Query: 4 AQISWVRHRDIHLLTVSG-YTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
Q++W + + L S Y T + + L +K K D G Y C+V
Sbjct: 32 TQVTW--YFGVRQLENSEKYEITYEDGVA----------ILYVKDITKLDDGTYRCKVV 78
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 33.2 bits (76), Expect = 0.014
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 19/84 (22%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
I W +D L++ T D R Q E+ LQI+Y + D+G Y C ST
Sbjct: 39 TILW--RKDGVLVS------TQDSRIK-----QLENGVLQIRYAKLGDTGRYTCIAST-- 83
Query: 65 PIGI---SMYLSVVEPITQIIGGP 85
P G S Y+ V E + P
Sbjct: 84 PSGEATWSAYIEVQEF-GVPVQPP 106
Score = 27.0 bits (60), Expect = 1.5
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
I GP + + T L+CV + P P I W +
Sbjct: 10 VIRQGPVNQTVAVDGTFVLSCVA--TGSPVPTILWRKD 45
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 33.7 bits (76), Expect = 0.014
Identities = 17/103 (16%), Positives = 25/103 (24%), Gaps = 32/103 (31%)
Query: 42 TLQIKYPQKRDSGIYECQV---------------STTPPIGISMYLSVVEPITQIIGGPD 86
+ K G+Y+C+ S + + G D
Sbjct: 50 KWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSD 109
Query: 87 MYINK-------------GSTMNLTCVIKHSPEPPPAIYWLHN 116
G+T+ LTC P I W HN
Sbjct: 110 GNEEMGGITQTPYKVSISGTTVILTC----PQYPGSEILWQHN 148
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 33.7 bits (77), Expect = 0.016
Identities = 19/135 (14%), Positives = 32/135 (23%), Gaps = 25/135 (18%)
Query: 6 ISWVRHRD-------IHLLTVSGYTYTSD---QRFSCIHKPQNEDWTLQIKYPQKRDSGI 55
+ W R S TY +F I+ TL + DS
Sbjct: 56 MFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFL-INHASLTLSTLTVTSAHPEDSSF 114
Query: 56 YECQVSTTPPIGISMYL------SVVEPITQIIGGPDMYI--------NKGSTMNLTCVI 101
Y C + V + + P++ + + L C+
Sbjct: 115 YICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLA 174
Query: 102 KHSPEPPPAIYWLHN 116
+ W N
Sbjct: 175 TGFYPDHVELSWWVN 189
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 32.8 bits (75), Expect = 0.019
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 18/84 (21%)
Query: 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPD 86
D RF I P D+ + I ++ DSGIY C + P +I P
Sbjct: 69 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLH------------PKAKIEESP- 115
Query: 87 MYINKGSTMNLTCVIKHSPEPPPA 110
G+ + +T I + P+
Sbjct: 116 -----GAELVVTERILETSTRYPS 134
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 32.6 bits (74), Expect = 0.021
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 5 QISWVRHRD-----IHLLTVSGYTYTSDQ---RFSCIHKPQNEDWTLQIKYPQKRDSGIY 56
+ W+ I L +G + R HK D +LQI Q D Y
Sbjct: 35 LVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPG-DVSLQINTLQMDDRNHY 93
Query: 57 ECQVSTTPPIG 67
C+V+ P G
Sbjct: 94 TCEVTWQTPDG 104
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 33.8 bits (77), Expect = 0.021
Identities = 28/164 (17%), Positives = 47/164 (28%), Gaps = 12/164 (7%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIH---KPQNEDWTLQIKYPQKRDSGIYECQV- 60
I W R + R + + K +N D+++ I D+G Y C
Sbjct: 35 PIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKF 94
Query: 61 -----STTPPIGISMYLSV-VEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWL 114
T G LSV +P ++ GP T++ TC + W
Sbjct: 95 RKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWF 154
Query: 115 HNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYI 158
N + S + V + + + I
Sbjct: 155 KNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTR--EDVHSQVI 196
Score = 28.0 bits (62), Expect = 1.6
Identities = 17/120 (14%), Positives = 42/120 (35%), Gaps = 6/120 (5%)
Query: 42 TLQIKYPQKRDSGIYECQVS----TTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNL 97
T ++ ++ C+V+ P+ + LS + + + + +N+
Sbjct: 181 TAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNV 240
Query: 98 TCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATY 157
TC ++ + WL N VS+ +E+ + L V++ + +
Sbjct: 241 TCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSA--HRDDVKL 298
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 33.0 bits (75), Expect = 0.025
Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 21/148 (14%)
Query: 6 ISWVRHRDIHLLTVSGYTYTSDQ--------RFSCIHKPQNEDWTLQIKYPQKRDSGIYE 57
+ W + L Y + RFS + + + + + + DS +Y
Sbjct: 33 VVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFS-VQQFDDYHSEMNMSALELEDSAMYF 91
Query: 58 CQVSTTPPIGISMYLS---VVEPITQIIGGPDMYI--------NKGSTMNLTCVIKH-SP 105
C S V + + P + + L C+ + P
Sbjct: 92 CASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFP 151
Query: 106 EPPPAIYWLHNTEVSQLNLMQRESESSS 133
+ +W++ EV ++ S
Sbjct: 152 DHVELSWWVNGKEVHSGVSTDPQAYKES 179
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 31.9 bits (73), Expect = 0.026
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 71 YLSVVEPIT-QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
L+V+E + I G + + G ++ ++C + PPP I W +
Sbjct: 2 QLTVLERVAPTITGNLENQTTSIGESIEVSCTASGN--PPPQIMWFKD 47
Score = 28.5 bits (64), Expect = 0.50
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 13/57 (22%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
QI W + L+ SG R L I+ +K D G+Y CQ
Sbjct: 41 QIMW-FKDNETLVEDSGIVLKDGNR------------NLTIRRVRKEDEGLYTCQAC 84
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 32.5 bits (73), Expect = 0.027
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 3/74 (4%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST-T 63
I W + + + L + SG ++ + + L I D G Y +V
Sbjct: 46 TIKWFKGKWLELGSKSGARFSFKESHNSASNVYT--VELHIGKVVLGDRGYYRLEVKAKD 103
Query: 64 PPIGISMYLSVVEP 77
+ V P
Sbjct: 104 TCDSCGFNIDVEAP 117
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 32.2 bits (73), Expect = 0.029
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 28 QRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
RF + PQ ++ TL I+ + D+G Y ++
Sbjct: 75 DRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGN 111
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 31.6 bits (72), Expect = 0.029
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 69 SMYLSVVEPITQIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
S S +E + Q++ P + G T+ LTC + P P I+W+ +
Sbjct: 2 SSGSSGLEEV-QLVVEPEGGAVAPGGTVTLTCEVPAQ--PSPQIHWMKD 47
Score = 25.8 bits (57), Expect = 3.5
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 36 PQNEDWTLQIKYPQKRDSGIYECQVS 61
P L + +D G Y C +
Sbjct: 52 PLPPSPVLILPEIGPQDQGTYSCVAT 77
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 33.2 bits (75), Expect = 0.034
Identities = 10/76 (13%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+ W+ + +L + + +T + ++ L++ P ++G Y +
Sbjct: 277 SLRWLF--NGSVLNETSFIFTEFLEPAANETVRHG--CLRLNQPTHVNNGNYTLLAAN-- 330
Query: 65 PIGI---SMYLSVVEP 77
P G S+ + ++
Sbjct: 331 PFGQASASIMAAFMDN 346
Score = 32.4 bits (73), Expect = 0.060
Identities = 19/162 (11%), Positives = 32/162 (19%), Gaps = 23/162 (14%)
Query: 3 LAQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62
L Q W+ TV + C
Sbjct: 187 LEQAGWILTELEQSATVMKSGGLPSLG------------LTLANVTSDLNRKNVTCWAEN 234
Query: 63 TPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQL 122
+G + V + +P P++ WL N V
Sbjct: 235 --DVGRAEVSVQVNVSFPA---SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNE 289
Query: 123 NLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAGTYT 164
V + + + T++ G YT
Sbjct: 290 TSFIFTEFLEPAANETVRHGCLRLN------QPTHVNNGNYT 325
Score = 28.9 bits (64), Expect = 0.84
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSS 133
P+ ++ G + L C + W+ +M+ S
Sbjct: 166 PNASVDVGDDVLLRC--QVEGRGLEQAGWILTELEQSATVMKSGGLPSL 212
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 32.7 bits (74), Expect = 0.035
Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 20/107 (18%)
Query: 16 LLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVV 75
LL S + R + + TL I Q DS Y C V T
Sbjct: 47 LLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSG---------- 96
Query: 76 EPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQL 122
G +G+++ V + P PA+Y L ++ S
Sbjct: 97 -------GSYIPTFGRGTSL---IVHPYIQNPDPAVYQLRRSKSSDK 133
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 32.9 bits (74), Expect = 0.036
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 42 TLQIKYPQKRDSGIYECQVS----TTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNL 97
TL + ++G Y+ V T + E I I Y++ + + L
Sbjct: 53 TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVEL 112
Query: 98 TCVIKHSP-EPPPAIYWLHNT 117
+K S + P Y LH +
Sbjct: 113 HATVKFSGGKTPADNYELHYS 133
Score = 31.3 bits (70), Expect = 0.13
Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 16/134 (11%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMY---INKGSTMNLT 98
+ I+ +G+Y +V + + + T + + + G+ ++L
Sbjct: 146 DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLN 205
Query: 99 CVIKH------SPEPPPAIY--WLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELT 150
V+ S P I W E QL+ SE ++ + +
Sbjct: 206 YVVSEDIVGDSSGMPNLTIKYNWYLQRE-GQLSPTLIGSEVGEALEGFSITPDGHLF--- 261
Query: 151 WKLEATYILAGTYT 164
K ATY +
Sbjct: 262 -KESATYDDTAKFW 274
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 31.3 bits (71), Expect = 0.036
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 73 SVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+P + + ++ G + L C ++ +I WL +
Sbjct: 5 EQAQPWGVPVEVESLLVHPGDLLQLRCRLRD---DVQSINWLRD 45
Score = 29.8 bits (67), Expect = 0.15
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 39 EDWTLQIKYPQKRDSGIYECQVS 61
++++ DSG+Y C S
Sbjct: 58 TGEEVEVRDSIPADSGLYACVTS 80
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 32.1 bits (73), Expect = 0.039
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 9/74 (12%)
Query: 50 KRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGP-------DMYINKGSTMNLTCVIK 102
++ SG + + P DM + +GS C ++
Sbjct: 7 RKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVE 66
Query: 103 HSPEPPPAIYWLHN 116
P P + W +
Sbjct: 67 --GYPDPEVMWFKD 78
Score = 29.4 bits (66), Expect = 0.34
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 12/58 (20%)
Query: 5 QISWVRHRDIHLLTVSG-YTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
++ W +D + + S + D+ +C +L I D Y C+
Sbjct: 72 EVMW--FKDDNPVKESRHFQIDYDEEGNC---------SLTISEVCGDDDAKYTCKAV 118
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 31.2 bits (71), Expect = 0.041
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 39 EDWTLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVVEPI 78
++++ DSG+Y C S+ P G ++V + +
Sbjct: 52 TGEEVEVQDSVPADSGLYACVTSS--PSGSDTTYFSVNVSDAL 92
Score = 29.3 bits (66), Expect = 0.23
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
++ G + L C ++ +I WL +
Sbjct: 12 SFLVHPGDLLQLRCRLRD---DVQSINWLRD 39
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 31.4 bits (71), Expect = 0.041
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 15 HLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQV--STTPPIGISMYL 72
L++ + R + + +++ Q+ D+G Y C V + P I + L
Sbjct: 42 PLVSSAVDRRAPAGRRTFLTDLGGGLLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSL 101
Query: 73 SVVEP 77
+++ P
Sbjct: 102 NILPP 106
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 31.1 bits (71), Expect = 0.046
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
D + +G + ++ + EP P + WL N
Sbjct: 14 DQSVREGQDVIMSIRV--QGEPKPVVSWLRN 42
Score = 29.2 bits (66), Expect = 0.26
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 25 TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQ 59
+RF + + L+I ++ D+G Y C+
Sbjct: 48 PDQRRF--AEEAEGGLCRLRILAAERGDAGFYTCK 80
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 31.5 bits (72), Expect = 0.047
Identities = 5/31 (16%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
D + G ++ L + P W+
Sbjct: 16 DQKVRAGESVELFGKVTG--TQPITCTWMKF 44
Score = 28.8 bits (65), Expect = 0.40
Identities = 5/37 (13%), Positives = 9/37 (24%), Gaps = 2/37 (5%)
Query: 25 TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+ + L I ++ G Y V
Sbjct: 49 QESEHMKVENSENGS--KLTILAARQEHCGCYTLLVE 83
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 31.3 bits (71), Expect = 0.050
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 25 TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+ R +K +N+ W+L ++ D G Y C V
Sbjct: 50 KQEHRIG-GYKVRNQHWSLIMESVVPSDKGNYTCVVE 85
Score = 28.9 bits (65), Expect = 0.30
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ +T+ C P P + WL N
Sbjct: 17 LHAVPAANTVKFRCPA--GGNPMPTMRWLKN 45
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 31.3 bits (71), Expect = 0.052
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 7 SWVRHRDIHLLTVSGYTYTSDQ--------RFSCIHKPQNEDWTLQIKYPQKRDSGIYEC 58
+W RD + T + R + +++ Q DSG+Y+C
Sbjct: 34 AWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQC 93
Query: 59 QVSTTPPIGISMYLSV 74
+ P ++ +
Sbjct: 94 VIYQPPKEPHMLFDRI 109
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 31.1 bits (71), Expect = 0.054
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
D + +G L C ++ + P P I WL N
Sbjct: 20 DCAVIEGQDFVLQCSVRGT--PVPRITWLLN 48
Score = 26.5 bits (59), Expect = 2.2
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 14/54 (25%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYEC 58
+I+W + + + T + L I+ D G Y C
Sbjct: 42 RITW--LLNGQPIQYARSTCEAGVA------------ELHIQDALPEDHGTYTC 81
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 30.9 bits (70), Expect = 0.058
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 11/76 (14%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+ W + +L S Y T + LQ+ P ++G Y
Sbjct: 32 ALQW--FYNGAILNESKYICTKIHVTNH----TEYHGCLQLDNPTHMNNGDYTLIAKN-- 83
Query: 65 PIGI---SMYLSVVEP 77
G + +
Sbjct: 84 EYGKDEKQISAHFMGW 99
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 31.2 bits (71), Expect = 0.064
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 69 SMYLSVVEPITQIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
S L+V + G + +G+T L C + + W
Sbjct: 10 SAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAP----VEWWKG 54
Score = 25.4 bits (56), Expect = 6.7
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 7/38 (18%)
Query: 42 TLQIKYPQKRDSGIYECQV--STTPPIGISMYLSVVEP 77
LQI+ D+G Y C T S L+V
Sbjct: 74 ELQIRGLVAEDAGEYLCMCGKERT-----SAMLTVRAM 106
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 31.0 bits (70), Expect = 0.072
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 7 SWVRHRDIHLLTVSGYTYTSDQ--------RFSCIHKPQNEDWTLQIKYPQKRDSGIYEC 58
+W RD + T + R + +++ Q DSG+Y+C
Sbjct: 39 AWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQC 98
Query: 59 QVSTTPPIGISMYLSV 74
+ P ++ +
Sbjct: 99 VIYQPPKEPHMLFDRI 114
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 30.9 bits (69), Expect = 0.075
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 10 RHRDIHLLTV-SGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63
HR I +L + S+ FS I+ D+ L IK + +DSG Y +++ T
Sbjct: 43 SHRKIEILNWYNDGPSWSNVSFSDIYGFDYGDFALSIKSAKLQDSGHYLLEITNT 97
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.077
Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 27/126 (21%)
Query: 28 QRF-SCIHKPQNEDWTL-QIKYPQKRDSGI---YECQVS---TTPPIGISMYLSVVEPIT 79
Q+F + + N + + IK Q++ S + Y Q + +S ++P
Sbjct: 80 QKFVEEVLRI-NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 80 QIIGG-----PDMYIN----KG---STMNLTCVIKHSPE--PPPAIYWLH----NTEVSQ 121
++ P + G + + L + + + I+WL+ N+ +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 122 LNLMQR 127
L ++Q+
Sbjct: 199 LEMLQK 204
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 30.6 bits (69), Expect = 0.082
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 2 SLAQISWVRHRD----IHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYE 57
W R ++ G + R S P N +T+ ++ + D+G Y
Sbjct: 25 RTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYW 84
Query: 58 CQVSTT 63
C V T
Sbjct: 85 CGVDTP 90
>1yjd_C TP44, T-cell-specific surface glycoprotein CD28; IGSF, CD28
homodimer, immune system-signaling protein comple; HET:
NAG; 2.70A {Homo sapiens} SCOP: b.1.1.1
Length = 140
Score = 31.3 bits (70), Expect = 0.085
Identities = 13/59 (22%), Positives = 21/59 (35%)
Query: 7 SWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP 65
S V ++ S F+C K NE T ++ + IY C++ P
Sbjct: 45 SAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVMYP 103
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 31.7 bits (72), Expect = 0.085
Identities = 21/133 (15%), Positives = 35/133 (26%), Gaps = 23/133 (17%)
Query: 6 ISWVRHRD-------IHLLTVSGYTYTSD---QRFSCIHKPQNEDWTLQIKYPQKRDSGI 55
+ W R S TY +F I+ TL + DS
Sbjct: 33 MFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFL-INHASLTLSTLTVTSAHPEDSSF 91
Query: 56 YECQVSTTPPIGISMY----LSVVEPITQIIGGPDMYI--------NKGSTMNLTCVIKH 103
Y C T+ G + V + + P++ + + L C+
Sbjct: 92 YICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATG 151
Query: 104 SPEPPPAIYWLHN 116
+ W N
Sbjct: 152 FYPDHVELSWWVN 164
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 31.6 bits (71), Expect = 0.087
Identities = 12/50 (24%), Positives = 17/50 (34%)
Query: 16 LLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP 65
+ V TS+ R+S + TL I D+ Y C V
Sbjct: 48 TVLVDQKDKTSNGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDRGS 97
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 31.5 bits (71), Expect = 0.090
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 20/130 (15%)
Query: 6 ISWVRHRDIHLLTVSGYTYTSDQ--------RFSCIHKPQNEDWTLQIKYPQKRDSGIYE 57
+ W R L + Y+ + +S + + + E + L + QK + Y
Sbjct: 34 MYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYS-VSREKKESFPLTVTSAQKNPTAFYL 92
Query: 58 CQVS-----------TTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPE 106
C S T +V P + + I+ L C+
Sbjct: 93 CASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYP 152
Query: 107 PPPAIYWLHN 116
+ W N
Sbjct: 153 DHVELSWWVN 162
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 31.5 bits (71), Expect = 0.092
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 13/100 (13%)
Query: 29 RFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST------------TPPIGISMYLSVVE 76
RFS P N +L+I+ + DS +Y C S T + + +V
Sbjct: 90 RFS-AECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFP 148
Query: 77 PITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
P + + I+ L C+ + W N
Sbjct: 149 PEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN 188
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 30.4 bits (69), Expect = 0.092
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 39 EDWTLQIKYPQKRDSGIYECQVS 61
E TLQIK + D+G Y C +
Sbjct: 60 EQGTLQIKNLRISDTGTYTCVAT 82
Score = 28.5 bits (64), Expect = 0.39
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
I+ GP + + T L C + +P P I WL
Sbjct: 10 IILQGPANQTLAVDGTALLKCKA--TGDPLPVISWLKE 45
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 31.4 bits (71), Expect = 0.093
Identities = 24/147 (16%), Positives = 38/147 (25%), Gaps = 37/147 (25%)
Query: 19 VSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPI 78
D RF+ + + ++L I Q DS Y C S
Sbjct: 50 RPVSNKKEDGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNRI------------- 96
Query: 79 TQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRL 138
+ G+ + V + P PA+Y L ++ S L
Sbjct: 97 ---------FFGDGTQLV---VKPNIQNPEPAVYQL------------KDPRSQDSTLCL 132
Query: 139 VVLLSVSIVELTWKLEATYILAGTYTN 165
I T+I T +
Sbjct: 133 FTDFDSQINVPKTMESGTFITDKTVLD 159
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer,
immunoglobulin superfamily (beta S fold, receptor,
signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A
{Homo sapiens} PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Length = 130
Score = 30.9 bits (69), Expect = 0.096
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFS------CIHKPQNEDWTLQIKYPQKRDSGIYEC 58
+++ +R D + V TY + C L I+ + D+G+Y C
Sbjct: 35 RVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYIC 94
Query: 59 QVST--TPPIGISM----YLSVVEP 77
+V PP + + + V++P
Sbjct: 95 KVELMYPPPYYLGIGNGTQIYVIDP 119
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 30.4 bits (69), Expect = 0.10
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
D+ + +G + C + S P P + W +
Sbjct: 18 DLTVQEGKLCRMDCKV--SGLPTPDLSWQLD 46
Score = 29.6 bits (67), Expect = 0.18
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+SW D G D + + N +L I+ RD+GIY C +
Sbjct: 40 DLSW--QLD-------GKPVRPDSAHKMLVRE-NGVHSLIIEPVTSRDAGIYTCIAT 86
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 30.7 bits (69), Expect = 0.10
Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+ W + +L + + +T + L++ P ++G Y +
Sbjct: 31 SLRW--LFNGSVLNETSFIFTEFLEPA--ANETVRHGCLRLNQPTHVNNGNYTLLAAN-- 84
Query: 65 PIGI---SMYLSVVEP 77
P G S+ + ++
Sbjct: 85 PFGQASASIMAAFMDN 100
Score = 24.9 bits (54), Expect = 9.0
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 12/61 (19%)
Query: 107 PPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLE---ATYILAGTY 163
P P++ WL N +SF+ + + + L T++ G Y
Sbjct: 28 PAPSLRWLFN---------GSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNY 78
Query: 164 T 164
T
Sbjct: 79 T 79
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 30.4 bits (69), Expect = 0.10
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+M I++G + + S P P + W N
Sbjct: 14 NMSIDEGRFCRMDFKV--SGLPAPDVSWYLN 42
Score = 29.6 bits (67), Expect = 0.16
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 10/54 (18%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYEC 58
+SW + + G T SD + + +L + + D+G Y C
Sbjct: 36 DVSW--YLN-------GRTVQSDDLHK-MIVSEKGLHSLIFEVVRASDAGAYAC 79
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 30.5 bits (69), Expect = 0.11
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQ-----RFSCIHKPQNEDWTLQIKYPQKRDSGIYECQ 59
+ W + T S+Q R S ++ +T+ ++ + D+GIY C
Sbjct: 33 KKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCG 92
Query: 60 VSTTPP-IGISMYLSV 74
++ + +++
Sbjct: 93 ITKGGLDPMFKVTVNI 108
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 30.4 bits (69), Expect = 0.11
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 38 NEDWTLQIKYPQKRDSGIYECQVS 61
+ D ++ + DSG YE V
Sbjct: 76 DFDTVFFVRQAARSDSGEYELSVQ 99
Score = 28.1 bits (63), Expect = 0.65
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 2/28 (7%)
Query: 89 INKGSTMNLTCVIKHSPEPPPAIYWLHN 116
G +NL +P P + W
Sbjct: 36 RKVGEQLNLVVPF--QGKPRPQVVWTKG 61
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 29.9 bits (68), Expect = 0.12
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 13/58 (22%)
Query: 5 QISWVRHRDIHLLTVSG-YTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
W +D +T G Y + D+ L+I DSG+Y C V
Sbjct: 37 TAIW--TKDGKAITQGGKYKLSEDKGGF----------FLEIHKTDTSDSGLYTCTVK 82
Score = 29.6 bits (67), Expect = 0.17
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
D ++ S + EP P W +
Sbjct: 15 DTTVSSDSVAKFAVKA--TGEPRPTAIWTKD 43
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 30.0 bits (68), Expect = 0.14
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
I +G + TC + + P P IYW +
Sbjct: 17 HYKIFEGMPVTFTCRV--AGNPKPKIYWFKD 45
Score = 27.3 bits (61), Expect = 1.1
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 9/57 (15%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+I W +D ++ YT + +L D G Y +
Sbjct: 39 KIYW--FKDGKQISPKSDHYTIQRDLDGTC-------SLHTTASTLDDDGNYTIMAA 86
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 29.6 bits (67), Expect = 0.14
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
QI P + GST+ L CV P P W N
Sbjct: 5 QICVEPTSQKLMPGSTLVLQCVA--VGSPIPHYQWFKN 40
Score = 29.2 bits (66), Expect = 0.21
Identities = 5/26 (19%), Positives = 6/26 (23%)
Query: 36 PQNEDWTLQIKYPQKRDSGIYECQVS 61
+ Y G Y C V
Sbjct: 45 THETKKLYMVPYVDLEHQGTYWCHVY 70
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 30.0 bits (68), Expect = 0.14
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+I+ P M + +G + +C EP P + WL
Sbjct: 16 RILTKPRSMTVYEGESARFSCDT--DGEPVPTVTWLRK 51
Score = 26.9 bits (60), Expect = 1.7
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 38 NEDWTLQIKYPQKRDSGIYECQVS 61
T +I Q D G Y V
Sbjct: 67 KYKSTFEISSVQASDEGNYSVVVE 90
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 31.1 bits (69), Expect = 0.14
Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 4/102 (3%)
Query: 21 GYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIG-ISMYLSVVEP-- 77
G + P + T + Q G Y + G +++ L+V +P
Sbjct: 234 GAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPK 293
Query: 78 ITQIIGGPDMYINKGSTMNLTCVIKH-SPEPPPAIYWLHNTE 118
++ + + L C++ H P + W
Sbjct: 294 VSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGG 335
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 30.8 bits (69), Expect = 0.14
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 9/136 (6%)
Query: 6 ISWVRH-----RDIHLLTVSGYTYTSD--QRFSCIHKPQNEDWTLQIKYPQKRDSGIYEC 58
I+W +++ + G + + ++ D +L++ Q ++G Y C
Sbjct: 40 ITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRC 99
Query: 59 QVSTTP-PIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNT 117
+V TP ++ L VV + D K + C I W T
Sbjct: 100 EVVVTPLKAQGTVQLEVVASPASRL-LLDQVGMKENEDKYMCESSGFYPEAINITWEKQT 158
Query: 118 EVSQLNLMQRESESSS 133
+ + E +
Sbjct: 159 QKFPHPIEISEDVITG 174
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 30.8 bits (69), Expect = 0.15
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 40 DWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGP 85
+ L + K + G Y C V + + S + V++ + P
Sbjct: 89 KYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKP 134
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 29.9 bits (68), Expect = 0.15
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP 65
D RF+ + + +L I Q DS Y C S
Sbjct: 57 DGRFTIFFNKREKKLSLHIADSQPGDSATYFCAASANSG 95
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 30.2 bits (68), Expect = 0.15
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGIS-MYLSVVE 76
++ + Q D G Y+C+V P + ++L V+
Sbjct: 90 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 29.6 bits (67), Expect = 0.17
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+I P D+ I++G + + C EP P + W
Sbjct: 7 KIEALPSDISIDEGKVLTVACAFTG--EPTPEVTWSCG 42
Score = 28.4 bits (64), Expect = 0.41
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 42 TLQIKYPQKRDSGIYECQVS 61
TL I QK+D G+Y +
Sbjct: 64 TLIIMDVQKQDGGLYTLSLG 83
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 30.7 bits (68), Expect = 0.19
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Query: 85 PDMYINKGSTMNLTCVIK---HSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVL 141
++ G + +C+IK +P P I W E+ QR S+ + +
Sbjct: 8 SAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPH 67
Query: 142 LSVSIVELTWKLEATYILAGTYT 164
L+ + L+ L L
Sbjct: 68 LNHTQAFLSCSLNWGNSLQILDQ 90
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 30.6 bits (69), Expect = 0.21
Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 24/133 (18%)
Query: 6 ISWVRHRDIHLLTVSGYTYTSDQ-------RFSCIHKPQNEDWTLQIKYPQKRDSGIYEC 58
+ W R L + Y+ Q S +PQ+ + L K DSG Y C
Sbjct: 33 LYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLS-ASRPQDRQFILSSKKLLLSDSGFYLC 91
Query: 59 QVSTTPPIGISMY-------LSVVEPITQIIGGPDMYI--------NKGSTMNLTCVIKH 103
S + G+ L+VVE + ++ P++ + + L C+
Sbjct: 92 AWSVSVGAGVPTIYFGEGSWLTVVEDLNKVF-PPEVAVFEPSEAEISHTQKATLVCLATG 150
Query: 104 SPEPPPAIYWLHN 116
+ W N
Sbjct: 151 FFPDHVELSWWVN 163
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 29.5 bits (66), Expect = 0.23
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 40 DWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEP 77
+ L + K + G Y C V + + S + V++
Sbjct: 84 KYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQK 121
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 29.2 bits (66), Expect = 0.26
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ +GS + + +P P W N
Sbjct: 14 SQTVGQGSDAHFRVRVV--GKPDPECEWYKN 42
Score = 27.2 bits (61), Expect = 1.0
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 10/57 (17%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+ W +++ + S Y + P++ L I+ DS +
Sbjct: 36 ECEW--YKNGVKIERSDRIY--------WYWPEDNVCELVIRDVTGEDSASIMVKAI 82
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 28.8 bits (65), Expect = 0.26
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 7/37 (18%)
Query: 42 TLQIKYPQKRDSGIYECQV--STTPPIGISMYLSVVE 76
TL ++ D G Y S L V+E
Sbjct: 64 TLTVREVGPADQGSYAVIAGSSKV-----KFDLKVIE 95
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 30.0 bits (67), Expect = 0.27
Identities = 23/150 (15%), Positives = 41/150 (27%), Gaps = 32/150 (21%)
Query: 16 LLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVV 75
L + + Q F + + LQ Q DS +Y C +
Sbjct: 48 LKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLASS---------- 97
Query: 76 EPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFV 135
+ +G+++ V+ + P PA+Y L ++ S
Sbjct: 98 -------SFSKLVFGQGTSL---SVVPNIQNPEPAVYQL------------KDPRSQDST 135
Query: 136 KRLVVLLSVSIVELTWKLEATYILAGTYTN 165
L I T+I T +
Sbjct: 136 LCLFTDFDSQINVPKTMESGTFITDKTVLD 165
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 29.9 bits (67), Expect = 0.29
Identities = 21/138 (15%), Positives = 41/138 (29%), Gaps = 23/138 (16%)
Query: 6 ISWVRHRDIHLLTVSGYTYTSDQ--------RFSCIHKPQNEDWTLQIKYPQKRDSGIYE 57
+ W R H L + Y+Y + + +P E ++L ++ + +Y
Sbjct: 30 MYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYK-ASRPSQEQFSLILELATPSQTSVYF 88
Query: 58 CQVST-------------TPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKH- 103
C T + V P + I L C+ +
Sbjct: 89 CASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGF 148
Query: 104 SPEPPPAIYWLHNTEVSQ 121
P+ +W++ EV
Sbjct: 149 FPDHVELSWWVNGKEVHS 166
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 29.4 bits (66), Expect = 0.30
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 37 QNEDWTLQIKYPQKRDSGIYECQVS 61
+ + L P ++G Y
Sbjct: 61 EISEGCLLFNKPTHYNNGNYTLIAK 85
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 30.2 bits (67), Expect = 0.30
Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 18/91 (19%)
Query: 75 VEPITQIIGGPD-MYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSS 133
+ G ++ LTC PE ++W+ S
Sbjct: 3 PRRCPAQEVARGVLTSLPGDSVTLTCPGVE-PEDNATVHWVLRK--------PAAGSHPS 53
Query: 134 FVKRLVVLLSVSIVELTWKLEATYILAGTYT 164
+ L + V+L +G Y+
Sbjct: 54 RWAGMGRRLLLRSVQLHD--------SGNYS 76
Score = 26.0 bits (56), Expect = 7.2
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTC 99
L ++ Q DSG Y C + P + + + V Q+ K N+ C
Sbjct: 61 RLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDVPPEEPQLSC-----FRKSPLSNVVC 113
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 28.9 bits (65), Expect = 0.33
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ + G+ L CV+ EPPP + W
Sbjct: 22 PVRVVSGAEAELKCVV--LGEPPPVVVWEKG 50
Score = 28.1 bits (63), Expect = 0.71
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 24/80 (30%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYEC------ 58
+ W + G + +R S + L + D+G+Y C
Sbjct: 44 VVVWEK---------GGQQLAASERLSFPAD--GAEHGLLLTAALPTDAGVYVCRARNAA 92
Query: 59 -QVSTTPPIGISMYLSVVEP 77
+ + ++V+EP
Sbjct: 93 GEAYA------AAAVTVLEP 106
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed
death-1, costimulatory, immune system; 2.10A {Homo
sapiens}
Length = 129
Score = 29.2 bits (66), Expect = 0.34
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP 65
D RF P D+ + + ++ DSG Y C + P
Sbjct: 61 DCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAP 99
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 28.9 bits (65), Expect = 0.35
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ +G ++ L C I S PPP ++W N
Sbjct: 24 SKKVLEGDSVKLECQI--SAIPPPKLFWKRN 52
Score = 27.7 bits (62), Expect = 0.95
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 9/55 (16%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQ 59
++ W R + + +++ TL IK K+D+G Y
Sbjct: 46 KLFWKR---------NNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVS 91
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 28.6 bits (64), Expect = 0.36
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 42 TLQIKYPQKRDSGIYECQVS 61
L I+ Q D+G Y C S
Sbjct: 63 ILTIRNVQPSDAGTYVCTGS 82
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin
variable domain-like beta-sandwich, homodimer, immune
system; 2.00A {Mus musculus} SCOP: b.1.1.1
Length = 117
Score = 29.2 bits (65), Expect = 0.36
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQ------RFSCIHKPQNEDWTLQIKYPQKRDSGIYEC 58
+++ +R + + V T+T C L I+ + D+G+Y C
Sbjct: 33 RVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLYLC 92
Query: 59 QVST--TPPIGISM----YLSVVEP 77
+V PP + M + V++P
Sbjct: 93 KVELMYPPPYFVGMGNGTQIYVIDP 117
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 29.9 bits (67), Expect = 0.37
Identities = 20/159 (12%), Positives = 54/159 (33%), Gaps = 11/159 (6%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
++ + D + + T +++F+ + + L I + + ++C+V++
Sbjct: 263 EVQFSWFVDNVEVH-TAQTQPREEQFNSTFRVVS---ALPIMHQDWLNGKEFKCRVNSAA 318
Query: 65 -PIGISMYLSVVEPITQ----IIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119
P I +S + + P ++LTC+I + W + +
Sbjct: 319 FPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQA 378
Query: 120 SQLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYI 158
+ + + + L+V W+ T+
Sbjct: 379 PENYKNTQPIMDTDGSYFVYSKLNVQKSN--WEAGNTFT 415
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 29.6 bits (66), Expect = 0.39
Identities = 9/47 (19%), Positives = 14/47 (29%)
Query: 16 LLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62
+L S R + +L I + D+ Y C T
Sbjct: 47 ILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDT 93
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 30.0 bits (67), Expect = 0.41
Identities = 7/40 (17%), Positives = 9/40 (22%), Gaps = 5/40 (12%)
Query: 85 PDMYINKGSTMNLTCVIKHSPE-----PPPAIYWLHNTEV 119
+ S CV+K I W N
Sbjct: 11 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFT 50
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 29.7 bits (67), Expect = 0.42
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 71 YLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTE 118
Y + + +++++G T+ C + +PPPAI WL +
Sbjct: 379 YFTCRRARIRDRKAQQVFVDEGHTVQFVC--RADGDPPPAILWLSPRK 424
Score = 27.0 bits (60), Expect = 3.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 38 NEDWTLQIKYPQKRDSGIYECQVS 61
D TL+++Y Q +D+G Y C +
Sbjct: 438 FPDGTLEVRYAQVQDNGTYLCIAA 461
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin;
immune system/receptor, immune system/receptor/complex,
TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A
2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D
3qeq_D
Length = 215
Score = 29.6 bits (66), Expect = 0.43
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 19 VSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP 65
V+G +R + +D +L I Q D+G+Y C + +
Sbjct: 50 VTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQG 96
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 28.4 bits (64), Expect = 0.47
Identities = 5/31 (16%), Positives = 9/31 (29%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ G ++ P + W HN
Sbjct: 17 SHRVPCGQNTRFILNVQSK--PTAEVKWYHN 45
Score = 27.6 bits (62), Expect = 0.95
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 13/58 (22%)
Query: 5 QISWVRHRDIHLLTVSG-YTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
++ W + + L S YT+ TL+I DSG Y +
Sbjct: 39 EVKW--YHNGVELQESSKIHYTNTSGVL----------TLEILDCHTDDSGTYRAVCT 84
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 28.5 bits (64), Expect = 0.49
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
M + +G + + CV+ H W
Sbjct: 17 TMEVLEGESCSFECVLSH-ESASDPAMWTVG 46
Score = 26.2 bits (58), Expect = 3.1
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 7/44 (15%)
Query: 42 TLQIKYPQKRDSGIYECQV--STTPPIGISMYLSVVEPITQIIG 83
L ++ D+G V T+ L V E G
Sbjct: 66 ILVVREAAPSDAGEVVFSVRGLTS-----KASLIVRERSGPSSG 104
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 28.5 bits (64), Expect = 0.49
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
P ++KG + + P + W N
Sbjct: 16 PAYQVDKGGRVRFVVELAD---PKLEVKWYKN 44
Score = 25.8 bits (57), Expect = 3.8
Identities = 7/36 (19%), Positives = 9/36 (25%), Gaps = 2/36 (5%)
Query: 25 TSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQV 60
++ HK L I Q D Y
Sbjct: 49 RPSTKYIFEHK--GCQRILFINNCQMTDDSEYYVTA 82
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 28.4 bits (64), Expect = 0.52
Identities = 7/45 (15%), Positives = 11/45 (24%), Gaps = 4/45 (8%)
Query: 73 SVVEPITQIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
S + D G + L C + + W N
Sbjct: 2 SSGSSGIMVTKQLEDTTAYCGERVELECEVSE---DDANVKWFKN 43
Score = 25.4 bits (56), Expect = 5.4
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 42 TLQIKYPQKRDSGIYECQVST 62
L I+ K D+ Y +
Sbjct: 65 ILIIEGATKADAAEYSVMTTG 85
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 29.1 bits (65), Expect = 0.53
Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Query: 19 VSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS--TTPPIGISMYLSVVE 76
R S + L IK Q DS Y C + G L+V+
Sbjct: 50 TLNGDEKKKGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIP 109
Query: 77 PITQ 80
I
Sbjct: 110 NIQN 113
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 29.2 bits (65), Expect = 0.53
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 20/107 (18%)
Query: 16 LLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVV 75
+ S+ R++ + +L I Q DS Y C VS
Sbjct: 50 TIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDRGST--------- 100
Query: 76 EPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQL 122
+Y +G+ + + P PA+Y L +++ S
Sbjct: 101 --------LGRLYFGRGTQLTVWP---DIQNPDPAVYQLRDSKSSDK 136
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 28.9 bits (64), Expect = 0.55
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 39 EDWTLQIKYPQKRDSGIYECQVS 61
+ ++ +K D G+Y V
Sbjct: 101 DRSIFTVEGAEKEDEGVYTVTVK 123
Score = 27.8 bits (61), Expect = 1.3
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSS 133
+ + G+ + L I S +P P + W + ++
Sbjct: 27 TIVVVAGNKLRLDVPI--SGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 28.1 bits (63), Expect = 0.65
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 72 LSVVEPITQIIGGPDMY-INKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ + Y ++KG + LT + + WL N
Sbjct: 10 MDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD---HDAEVKWLKN 52
Score = 25.4 bits (56), Expect = 5.0
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 42 TLQIKYPQKRDSGIYECQV 60
TL I D Y+C V
Sbjct: 73 TLTISQCSLADDAAYQCVV 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.67
Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 91 KGSTMNLTCVIK-HSPEPPPAI 111
K + L +K ++ + PA+
Sbjct: 19 KQALKKLQASLKLYADDSAPAL 40
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 28.2 bits (63), Expect = 0.72
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQII 82
L + Q DSG Y C++ S ++V EP +II
Sbjct: 69 RLVLPAVQLEDSGEYLCEIDDES---ASFTVTVTEPPVRII 106
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 28.7 bits (64), Expect = 0.72
Identities = 16/134 (11%), Positives = 33/134 (24%), Gaps = 26/134 (19%)
Query: 6 ISWVRHRD------IHLLTVSGYTYTSD--QRFSCIHKPQNEDWTLQIKYPQKRDSGIYE 57
+SW + + L G + D L+++
Sbjct: 33 MSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATR--VTDTELRLQVANMSQGRTLY 90
Query: 58 CQVSTTPPIGISMY-------LSVVEPITQIIGGPDMYI--------NKGSTMNLTCVIK 102
C S L+V+E + + P++ + + L C+
Sbjct: 91 CTSSADHWTNTGQLYFGEGSKLTVLED-LKNVFPPEVAVFEPSEAEISHTQKATLVCLAT 149
Query: 103 HSPEPPPAIYWLHN 116
+ W N
Sbjct: 150 GFYPDHVELSWWVN 163
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 28.1 bits (63), Expect = 0.73
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
++ + + T TC +H P + W
Sbjct: 17 NLQVEEKGTAVFTCKTEH---PAATVTWRKG 44
Score = 27.3 bits (61), Expect = 1.2
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 13/58 (22%)
Query: 4 AQISWVRHRDIHLLTVSG-YTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQV 60
A ++W + + L SG + + + L I +K DS Y C +
Sbjct: 37 ATVTW--RKGLLELRASGKHQPSQEGLTL----------RLTISALEKADSDTYTCDI 82
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 28.9 bits (65), Expect = 0.75
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+SW+ + ++T Y R + D TL +D+G+Y C VS
Sbjct: 371 SVSWI-TPNGTVMTHGAY----KVRIAV-----LSDGTLNFTNVTVQDTGMYTCMVS 417
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 27.7 bits (62), Expect = 0.76
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEP 77
L + + +DSG +EC+ ++V +P
Sbjct: 66 RLILPEAKVQDSGEFECRTEGVS---AFFGVTVQDP 98
Score = 27.4 bits (61), Expect = 1.0
Identities = 4/31 (12%), Positives = 8/31 (25%), Gaps = 3/31 (9%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ + LTC + W +
Sbjct: 19 SLTFTTSERVVLTCELSR---VDFPATWYKD 46
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 27.7 bits (62), Expect = 0.78
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 42 TLQIKYPQKRDSGIYECQVS 61
++ ++ DSG Y+ +V
Sbjct: 59 SIFFPSAKRADSGNYKLKVK 78
Score = 27.7 bits (62), Expect = 0.85
Identities = 8/31 (25%), Positives = 9/31 (29%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ I G T NL P P W
Sbjct: 11 KIKIKAGFTHNLEVDF--IGAPDPTATWTVG 39
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 29.0 bits (64), Expect = 0.83
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 33 IHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINKG 92
+ + + + KRD+G Y C + T +GIS Y +V + P + G
Sbjct: 215 VTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVG 274
Query: 93 ST 94
+T
Sbjct: 275 AT 276
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 27.7 bits (62), Expect = 0.86
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
D ++ G + L C + + P ++WL +
Sbjct: 17 DQWVAPGEDVELRCELSRAGTP---VHWLKD 44
Score = 26.5 bits (59), Expect = 2.4
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 42 TLQIKYPQKRDSGIYECQVS 61
L I+ +D+G Y C+V
Sbjct: 64 MLVIRGASLKDAGEYTCEVE 83
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 28.9 bits (65), Expect = 0.86
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 2 SLAQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
++ + W+ + +L+ + + R S D TL + D+G+Y C V+
Sbjct: 378 PMSSVKWL-LPNGTVLSHA----SRHPRISV-----LNDGTLNFSHVLLSDTGVYTCMVT 427
Score = 26.2 bits (58), Expect = 6.5
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 84 GPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNT 117
D+ I++G L C P ++ WL
Sbjct: 359 PRDLNISEGRMAELKC----RTPPMSSVKWLLPN 388
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 27.5 bits (61), Expect = 1.1
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+I+ P D+ ++KG L C K P P I W
Sbjct: 11 RIVEHPSDLIVSKGEPATLNC--KAEGRPTPTIEWYKG 46
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 28.0 bits (62), Expect = 1.2
Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 11/120 (9%)
Query: 23 TYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVE----- 76
+ R H I + +G Y C S T P +S ++
Sbjct: 45 MFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIG 104
Query: 77 --PITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSF 134
+ P + G + L+C S + E + L + +F
Sbjct: 105 LYEKPSLSAQPGPTVLAGENVTLSC---SSRSSYDMYHLSREGEAHERRLPAGPKVNGTF 161
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 28.3 bits (63), Expect = 1.2
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 12/97 (12%)
Query: 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVE-------PI 78
D+ I + + + +G Y C+ S P G S + V
Sbjct: 60 DRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRK 119
Query: 79 TQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLH 115
++ P + G + L C S ++LH
Sbjct: 120 PSLLAHPGPLVKSGERVILQC---WSD-IMFEHFFLH 152
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 28.1 bits (62), Expect = 1.3
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 13/100 (13%)
Query: 29 RFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLS----VVEPITQIIGG 84
+FS + +P +TL+I+ DS +Y C S + V + +
Sbjct: 65 QFS-VERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFP 123
Query: 85 PDMYI--------NKGSTMNLTCVIKHSPEPPPAIYWLHN 116
P++ + + L C+ + W N
Sbjct: 124 PEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN 163
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 28.0 bits (62), Expect = 1.3
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 15/125 (12%)
Query: 42 TLQIKYPQKRDSGIYECQV-STTPPIGISMYLSVVEPITQIIGGPDMYI-------NKGS 93
L I + ++C+V S P I +S E + P +Y S
Sbjct: 83 ELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRG---PQVYTMAPPKEEMTQS 139
Query: 94 TMNLTCVIKH-SPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWK 152
+++TC++K P W N + + + + L L+V W+
Sbjct: 140 QVSITCMVKGFYPP-DIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKET--WQ 196
Query: 153 LEATY 157
T+
Sbjct: 197 QGNTF 201
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 26.9 bits (60), Expect = 1.4
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+I+ D +N G + L C I + W N
Sbjct: 9 KILTPLTDQTVNLGKEICLKCEISENIPGK----WTKN 42
Score = 25.4 bits (56), Expect = 5.1
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 1/36 (2%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEP 77
L I D G Y + + + V+
Sbjct: 62 KLVIANALTEDEGDYVF-APDAYNVTLPAKVHVISG 96
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 27.9 bits (62), Expect = 1.4
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 15/125 (12%)
Query: 42 TLQIKYPQKRDSGIYECQVS-TTPPIGISMYLSVVEPITQIIGGPDMYI-------NKGS 93
L + + + Y+C+VS P I +S + + P +Y +
Sbjct: 69 VLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPRE---PQVYTLPPSRDELTKN 125
Query: 94 TMNLTCVIKH-SPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTWK 152
++LTC++K P A+ W N + S L L+V W+
Sbjct: 126 QVSLTCLVKGFYPS-DIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSR--WQ 182
Query: 153 LEATY 157
+
Sbjct: 183 QGNVF 187
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 27.1 bits (59), Expect = 1.4
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 92 GSTMNLTCVIKHSPEPPPAIYWLHNTE 118
G+T+ LTC P I W HN +
Sbjct: 21 GTTVILTC----PQYPGSEILWQHNDK 43
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A
{Mus musculus} PDB: 3c60_A
Length = 200
Score = 27.7 bits (61), Expect = 1.5
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 16 LLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP 65
L + S + F + + LQ Q+ DS +Y C ++
Sbjct: 47 LQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQEIDSAVYYCAANSGTY 96
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II,
I immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 27.7 bits (61), Expect = 1.7
Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 14 IHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIG 67
I L ++ T + R + TL IK Q DSG Y C
Sbjct: 44 ITLFYLAQGT-KENGRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAEDGGSGN 96
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 26.5 bits (59), Expect = 1.8
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 42 TLQIKYPQKRDSGIYECQVST 62
L + Q +G Q +
Sbjct: 61 ILILHNCQLGMTGEVSFQAAN 81
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 26.9 bits (60), Expect = 1.9
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
D+ + +G L CV+ P + W +
Sbjct: 17 DLEVLEGGAATLRCVLSSVAAP---VKWCYG 44
Score = 25.7 bits (57), Expect = 4.3
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 13/58 (22%)
Query: 4 AQISWVRHRDIHLLTVSG-YTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQV 60
A + W ++L Y+ + L ++ + +DSG Y C
Sbjct: 37 APVKW--CYGNNVLRPGDKYSLRQEGAML----------ELVVRNLRPQDSGRYSCSF 82
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 27.8 bits (60), Expect = 1.9
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 13/57 (22%)
Query: 3 LAQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQ 59
LA++ W + Y + L I + DSG+Y+C
Sbjct: 561 LARVFWKFQNGVLKAESPKYGLMGRK-------------NLLIFNLSEGDSGVYQCL 604
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel,
oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP:
b.82.1.20
Length = 176
Score = 27.3 bits (60), Expect = 2.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 69 SMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPP 109
SM L VV+ D+ IN+G + L + HSP
Sbjct: 64 SMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFA 104
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system;
2.35A {Mus musculus} PDB: 2e7l_C
Length = 121
Score = 26.8 bits (60), Expect = 2.1
Identities = 5/37 (13%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 29 RFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP 65
+ +P E+++L ++ + +Y C
Sbjct: 63 GYK-ASRPSQENFSLTLESATPSQTSVYFCASGGGGT 98
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 27.3 bits (60), Expect = 2.2
Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 20/130 (15%)
Query: 6 ISWVRHRDIHLLTVSGYTYTSDQ---------RFSCIHKPQNEDWTLQIKYPQKRDSGIY 56
+ W R Y + RF +P+ TL+I+ ++ DS +Y
Sbjct: 57 LYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFF-AVRPEGSVSTLKIQRTERGDSAVY 115
Query: 57 ECQVSTT---------PPIGISMYLSVVEPITQIIGGP-DMYINKGSTMNLTCVIKHSPE 106
C S + + L V P + P + I+ L C+
Sbjct: 116 LCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYP 175
Query: 107 PPPAIYWLHN 116
+ W N
Sbjct: 176 DHVELSWWVN 185
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 2.3
Identities = 14/117 (11%), Positives = 37/117 (31%), Gaps = 37/117 (31%)
Query: 69 SMYLSVVEPITQIIGG-----------PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNT 117
Y +V + + + +G +N+ +++ P P +L +
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG--LNILEWLEN-PSNTPDKDYLLSI 234
Query: 118 EVS-------QL---------------NLMQRESESSSFVKRLVVLLSVSIVELTWK 152
+S QL L ++ + LV ++++ + +W+
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD-SWE 290
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 26.5 bits (59), Expect = 2.4
Identities = 4/31 (12%), Positives = 10/31 (32%), Gaps = 3/31 (9%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
D + G + + + + W+ N
Sbjct: 17 DQQVFVGDRVEMAVEVSE---EGAQVMWMKN 44
Score = 25.4 bits (56), Expect = 6.2
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 42 TLQIKYPQKRDSGIYECQVS 61
L + D G Y+ +
Sbjct: 68 ILIFSDVVQEDRGRYQVITN 87
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 26.6 bits (59), Expect = 2.5
Identities = 5/31 (16%), Positives = 10/31 (32%), Gaps = 4/31 (12%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
++G+T L C + + W
Sbjct: 17 TKEASEGATATLQCEL----SKVAPVEWKKG 43
Score = 25.8 bits (57), Expect = 4.4
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQII 82
LQI D+G Y C S L+V +
Sbjct: 63 ELQIHDLSVADAGEYSCMCGQER---TSATLTVRALPARFT 100
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 27.3 bits (60), Expect = 2.5
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 20/107 (18%)
Query: 14 IHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLS 73
L+++ + RF+ + +L I+ Q DS +Y C S
Sbjct: 46 KALMSIFSDGDKKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAAS------------ 93
Query: 74 VVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVS 120
Q + G+ ++ V + P PA+Y L +++ S
Sbjct: 94 -----EQNNYAQGLTFGLGTRVS---VFPYIQNPDPAVYQLRDSKSS 132
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 26.2 bits (58), Expect = 2.5
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 42 TLQIKYPQKRDSGIYECQV 60
L ++ + ++G Y C+
Sbjct: 67 RLVVQQAGQAEAGEYSCEA 85
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 27.1 bits (60), Expect = 2.9
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 42 TLQIKYPQKRDSGIYECQVS 61
L K Q D G+Y C
Sbjct: 302 DLFFKKVQVEDGGVYTCYAM 321
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 26.8 bits (59), Expect = 3.0
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 42 TLQIKYPQKRDSGIYECQV-STTPPIGISMYLSVVEPITQIIGGPDMYI-------NKGS 93
L + + + Y+C+V + P I +S + + P +Y +
Sbjct: 90 VLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPRE---PQVYTLPPSRDELTKN 146
Query: 94 TMNLTCVIKH-SPEPPPAIYWLHNTEVSQ 121
++LTC++K P A+ W N +
Sbjct: 147 QVSLTCLVKGFYPS-DIAVEWESNGQPEN 174
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 26.9 bits (59), Expect = 3.6
Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 12/100 (12%)
Query: 24 YTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGIS-----MYLSVVEP 77
+ H I + +G Y C S T P +S + + +
Sbjct: 45 FKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGL 104
Query: 78 IT--QIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLH 115
+ P + G ++ L+C S +Y L
Sbjct: 105 YEKPSLSAQPGPTVLAGESVTLSC----SSRSSYDMYHLS 140
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 26.7 bits (59), Expect = 3.7
Identities = 11/44 (25%), Positives = 15/44 (34%)
Query: 20 SGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63
S R+S K + L I Q DS Y C + +
Sbjct: 188 SDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES 231
Score = 25.9 bits (57), Expect = 6.1
Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 12/69 (17%)
Query: 6 ISWVRHRD-------IHLLTVSGYTYT----SDQRFSCIHKPQNEDWTLQIKYPQKRDSG 54
I W H++ ++ + + S ++ + + + ++ + DSG
Sbjct: 34 IHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRK-NLRMILRNLIENDSG 92
Query: 55 IYECQVSTT 63
+Y C
Sbjct: 93 VYYCATWDQ 101
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system;
2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Length = 112
Score = 25.7 bits (57), Expect = 4.3
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 26 SDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
S + F + + + LQ Q+ DS +Y C +S
Sbjct: 57 SSRGFEATYNKEATSFHLQKASVQESDSAVYYCALS 92
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 26.4 bits (58), Expect = 4.4
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 12/71 (16%)
Query: 52 DSGIYECQVSTTP-------PIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHS 104
+G Y+CQ + + + +P G + G ++LTC S
Sbjct: 75 KAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGL--VLMPGENISLTC---SS 129
Query: 105 PEPPPAIYWLH 115
P + L
Sbjct: 130 AHIPFDRFSLA 140
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 25.8 bits (57), Expect = 4.5
Identities = 8/52 (15%), Positives = 17/52 (32%)
Query: 22 YTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLS 73
+ + R+ ++ ++L+I D G Y C + S
Sbjct: 47 ESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVAGGYCDYALCS 98
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 26.6 bits (58), Expect = 4.5
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 18 TVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63
+ + FS +T+ P DSG++ C V+T
Sbjct: 370 VLHPKDFNHTDHFSVAI------FTIHRILPP--DSGVWVCSVNTV 407
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 26.9 bits (58), Expect = 4.5
Identities = 19/164 (11%), Positives = 42/164 (25%), Gaps = 16/164 (9%)
Query: 1 MSLAQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQV 60
++ SW +++ G Y + E+ + ++ + CQ+
Sbjct: 231 AAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQI 290
Query: 61 STTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVS 120
P Y+ V+P + PP++ +
Sbjct: 291 PVPDPATHGQYIVSVQPRRA--------------EKHIKSSVNIQMAPPSLQVTKDG--D 334
Query: 121 QLNLMQRESESSSFVKRLVVLLSVSIVELTWKLEATYILAGTYT 164
+L + + TWK T L ++
Sbjct: 335 SYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHS 378
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 26.0 bits (56), Expect = 4.7
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 33 IHKPQNEDWTLQIKYPQKRDSGIYECQVST 62
TL++ + +D G Y CQV+
Sbjct: 84 ASVANLAAPTLRLTHVHPQDGGRYWCQVAQ 113
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 26.8 bits (59), Expect = 4.7
Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 26/132 (19%)
Query: 49 QKRDSGIYECQVSTT-----------PPIGISMYLSVVEPITQIIGGPDMYI-------- 89
+ Y C V+ P + P +++GGP +++
Sbjct: 201 SSLGTQTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDT 260
Query: 90 -NKGSTMNLTCVIKHSPEPPPAIYW---LHNTEVSQLNLMQRESESSSFVKRLVVLLSVS 145
T +TCV+ P + + + EV RE + +S + + VL +
Sbjct: 261 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVL---T 317
Query: 146 IVELTWKLEATY 157
++ W Y
Sbjct: 318 VLHQDWLNGKEY 329
>3i84_A Cervical EMMPRIN; CD147, dimerization, cell adhesion, beta-strand
swapping; 2.00A {Homo sapiens} PDB: 3i85_A
Length = 98
Score = 25.5 bits (55), Expect = 5.4
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEV 119
GS + LTC + S WL V
Sbjct: 22 GSKILLTCSLDDSATEVTGHRWLKGGVV 49
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A
{Rattus norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B
1a6p_A 1t6w_A
Length = 97
Score = 25.4 bits (55), Expect = 5.6
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 42 TLQIKYPQKRDSGIYECQV 60
L+IK + DSG Y V
Sbjct: 60 DLKIKNLTRDDSGTYNVTV 78
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 26.0 bits (57), Expect = 5.8
Identities = 14/106 (13%), Positives = 26/106 (24%), Gaps = 12/106 (11%)
Query: 34 HKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPIT-------QIIGGPD 86
+ + I +G Y C + G S +E + + P
Sbjct: 52 QELVKKG-QFPIPSITWEHTGRYRCYYGSDTA-GRSESSDPLELVVTGAYIKPTLSAQPS 109
Query: 87 MYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESS 132
+N G + L C S E + + +
Sbjct: 110 PVVNSGGNVTLQC---DSQVAFDGFILCKEGEDEHPQCLNSQPHAR 152
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 25.3 bits (55), Expect = 6.0
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 38 NEDWTLQIKYPQKRDSGIYECQVST 62
++ L I + D+G Y+ ++T
Sbjct: 69 GPNYNLVISDLRMEDAGDYKADINT 93
>3c5j_B MHC class II antigen; HLA, MHC class II, glycoprotein, immune
response, membrane, transmembrane, GTP-binding,
methylation; HET: NAG; 1.80A {Homo sapiens} PDB: 2q6w_B
1a6a_B* 1d5m_B* 1j8h_B* 1d5z_B* 1d5x_B* 1d6e_B* 2seb_B*
2wbj_B* 1ymm_B* 3l6f_B* 3s4s_B 3s5l_B 1fyt_B* 1seb_B
1bx2_B* 1zgl_B 1fv1_B 1h15_B* 1hqr_B ...
Length = 190
Score = 25.8 bits (57), Expect = 6.0
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 10/38 (26%)
Query: 37 QNEDWTLQI-----KYPQKRDSGIYECQV---STTPPI 66
N DWT Q P+ + +Y CQV S T P+
Sbjct: 149 HNGDWTFQTLVMLETVPRSGE--VYTCQVEHPSVTSPL 184
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 25.5 bits (56), Expect = 6.1
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPP 65
+L+I + DSG Y+CQ
Sbjct: 67 SLRISDLRVEDSGTYKCQAFYVFF 90
>1iao_B MHC class II I-AD; MHC II, class II MHC, ovalbumin peptide; HET:
NAG; 2.60A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Length = 222
Score = 25.9 bits (57), Expect = 7.5
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 10/38 (26%)
Query: 37 QNEDWTLQI-----KYPQKRDSGIYECQV---STTPPI 66
+N DWT Q+ P + + +Y C V S PI
Sbjct: 175 RNGDWTFQVLVMLEMTPHQGE--VYTCHVEHPSLKSPI 210
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C*
3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 25.8 bits (56), Expect = 7.8
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 14 IHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62
I+L ++ T + R + TL I+ Q DSG Y C
Sbjct: 46 INLFYLASGT-KENGRLKSAFDSKERYSTLHIRDAQLEDSGTYFCAAEA 93
>4d8p_B Peptide from gamma-gliadin, linker, MHC class II; class II MHC,
immune system; 3.05A {Triticum aestivum}
Length = 250
Score = 25.9 bits (57), Expect = 7.8
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 10/38 (26%)
Query: 37 QNEDWTLQIK-----YPQKRDSGIYECQV---STTPPI 66
+N DWT QI PQ+ D +Y C V S PI
Sbjct: 182 RNGDWTFQILVMLEMTPQRGD--VYTCHVEHPSLQSPI 217
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer,
AT-rich interaction domain, NESG, ARID, cytopla binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 145
Score = 25.5 bits (55), Expect = 8.0
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 103 HSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRL 138
H P W + + QL + + + F+ L
Sbjct: 7 HHSHMPDHGDWTYEEQFKQLYELDGDPKRKEFLDDL 42
>4ah2_B HLA class II histocompatibility antigen gamma CHA class II
histocompatibility antigen\,DRB1-1...; MHC II, immune
system, SELF antigen; 2.36A {Homo sapiens}
Length = 229
Score = 25.5 bits (56), Expect = 8.3
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 10/38 (26%)
Query: 37 QNEDWTLQIKY-----PQKRDSGIYECQV---STTPPI 66
QN DWT Q P+ + +Y CQV S T P+
Sbjct: 180 QNGDWTFQTLVMLETVPRSGE--VYTCQVEHPSVTSPL 215
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 25.6 bits (56), Expect = 8.3
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 27 DQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62
RFS L +K Q +DS Y C V
Sbjct: 56 KGRFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQA 91
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 25.8 bits (56), Expect = 8.5
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 13/120 (10%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
Q++W R + + ++ TL + + Y+C+V+
Sbjct: 148 QLTWSRASGKPVNHSTRKE----EKQRN--GTLTVTSTLPVGTRDWIEGETYQCRVTHPH 201
Query: 65 PIG-----ISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIK-HSPEPPPAIYWLHNTE 118
+ + L C+I+ PE ++ WLHN
Sbjct: 202 LPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPE-DISVQWLHNEV 260
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 26.1 bits (56), Expect = 8.8
Identities = 9/101 (8%), Positives = 27/101 (26%), Gaps = 1/101 (0%)
Query: 50 KRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPP 109
SG+ +C + + + + + K + P
Sbjct: 132 NECSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEP 191
Query: 110 AIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELT 150
IY + ++ + ++ V + V + ++
Sbjct: 192 VIYVVQRRWNYGIHPSEDDATHWQTVAQ-TTDERVQLTDIR 231
>1uww_A Endoglucanase; carbohydrate binding module, glycosidase, lectin,
cellulose, binding, CBM, hydrolase; HET: MSE; 1.4A
{Bacillus akibai} SCOP: b.18.1.23
Length = 191
Score = 25.5 bits (55), Expect = 9.0
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 42 TLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPITQIIGGPDMYINKGSTMNLTCVI 101
+ + YP+ + S + +T P + + S + D Y++ I
Sbjct: 54 SWEFGYPEVKPSDNW----ATAPRL--DFWKSDLVRGENDYVTFDFYLDPVRATEGAMNI 107
Query: 102 KHSPEPPPAIYWLHNTEVSQLNLMQRES 129
+PP YW+ + +N + E
Sbjct: 108 NLVFQPPTNGYWVQAPKTYTINFDELEE 135
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR
complex, immune system; 2.50A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Length = 211
Score = 25.4 bits (55), Expect = 9.5
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 20 SGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
R+S + + I Q DS +Y C +S
Sbjct: 56 FDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALS 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.403
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,436,660
Number of extensions: 124335
Number of successful extensions: 1136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 860
Number of HSP's successfully gapped: 537
Length of query: 169
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 82
Effective length of database: 4,272,666
Effective search space: 350358612
Effective search space used: 350358612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)