RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1826
(169 letters)
>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 45.6 bits (107), Expect = 1e-07
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 8 WVRHRDIHLLTVSGYTYTSDQ--RFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP 65
+ + G ++ ++ WTL++ Q +D G+Y+C + P
Sbjct: 34 QDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKP 93
Query: 66 IG------ISMYLSVV 75
G ++ LSV+
Sbjct: 94 TGMIRIHQMNSELSVL 109
>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 40.7 bits (94), Expect = 8e-06
Identities = 12/60 (20%), Positives = 22/60 (36%)
Query: 6 ISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP 65
I W + + + L +SG + + + ++ I + D G YEC V
Sbjct: 30 IYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEK 89
>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 119
Score = 37.2 bits (85), Expect = 2e-04
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 30 FSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPI---GISMYLSVVE 76
+ P +D ++ I D+G + C V P I + L V E
Sbjct: 70 IQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFE 119
>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 36.9 bits (84), Expect = 2e-04
Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 1/75 (1%)
Query: 8 WVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIG 67
+R+ + L+I+ + D G Y C
Sbjct: 48 VHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQE 107
Query: 68 -ISMYLSVVEPITQI 81
++ L V +P I
Sbjct: 108 EAAVELKVEDPFYWI 122
>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding
Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 121
Score = 33.2 bits (75), Expect = 0.005
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 20 SGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+ RF + PQ ++ TL I+ + D+G Y ++
Sbjct: 62 WAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGN 106
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 33.0 bits (74), Expect = 0.006
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 5 QISWVRHRDIH--LLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62
I W++H + + G Y + + ++ E L I+ D+G Y C
Sbjct: 36 HIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGN 95
Query: 63 TPPIGI---SMYLSVV 75
IGI S +L+V+
Sbjct: 96 --SIGISFHSAWLTVL 109
Score = 27.3 bits (59), Expect = 0.48
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 2/88 (2%)
Query: 77 PITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVK 136
PI Q + G + C + P I W+ + E + +K
Sbjct: 5 PILQAGLPANASTVVGGDVEFVCKVYSD--AQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 62
Query: 137 RLVVLLSVSIVELTWKLEATYILAGTYT 164
V + +E+ + T+ AG YT
Sbjct: 63 AAGVNTTDKEIEVLYIRNVTFEDAGEYT 90
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 30.9 bits (69), Expect = 0.021
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 22 YTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
++ + + + D L IK + D G Y C+ +
Sbjct: 35 VVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRAT 74
Score = 26.3 bits (57), Expect = 0.75
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTE 118
+ + +G + + C + P P + W HN +
Sbjct: 11 KVIVVKQGQDVTIPCKVTGL--PAPNVVWSHNAK 42
>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal
fragment {Mouse (Mus musculus) [TaxId: 10090]}
Length = 117
Score = 30.8 bits (69), Expect = 0.029
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 12/85 (14%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSD------QRFSCIHKPQNEDWTLQIKYPQKRDSGIYEC 58
+++ +R + + V T+T C L I+ + D+G+Y C
Sbjct: 33 RVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLYLC 92
Query: 59 QVSTTPPIGISMY------LSVVEP 77
+V P + + V++P
Sbjct: 93 KVELMYPPPYFVGMGNGTQIYVIDP 117
>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 30.7 bits (68), Expect = 0.029
Identities = 6/56 (10%), Positives = 14/56 (25%)
Query: 8 WVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63
+ + + + + + F +L I D YE +
Sbjct: 27 LWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82
>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 30.1 bits (67), Expect = 0.040
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 40 DWTLQIKYPQKRDSGIYECQVSTT 63
++ L IK + DS Y C+V
Sbjct: 66 NFPLIIKNLKIEDSDTYICEVEDQ 89
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 29.4 bits (65), Expect = 0.067
Identities = 5/40 (12%), Positives = 12/40 (30%)
Query: 22 YTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+ + + + L I+ K D+ Y +
Sbjct: 38 EEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTT 77
Score = 24.0 bits (51), Expect = 5.9
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 3/60 (5%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVS 145
D G + L C + + W N E R K ++++ +
Sbjct: 9 DTTAYCGERVELECEVSE---DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGAT 65
>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 30.1 bits (68), Expect = 0.079
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 69 SMYLSVVEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPP 109
SM L VV+ D+ IN+G + L + HSP
Sbjct: 63 SMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFA 103
>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 29.6 bits (66), Expect = 0.088
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 29 RFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSVVEPIT 79
FS + N + L + K + G Y C V + + S + V++ ++
Sbjct: 71 LFS-AMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVS 120
>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 118
Score = 29.4 bits (65), Expect = 0.095
Identities = 11/58 (18%), Positives = 17/58 (29%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62
S R IH R + ++ L +K + DSG Y +
Sbjct: 43 DYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEI 100
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 29.0 bits (64), Expect = 0.10
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 41 WTLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVVEP 77
L I ++ G Y V +G + L+VV+
Sbjct: 56 SKLTILAARQEHCGCYTLLVEN--KLGSRQAQVNLTVVDK 93
Score = 28.3 bits (62), Expect = 0.20
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
QII P D + G ++ L + + P W+
Sbjct: 2 QIIQFPEDQKVRAGESVELFGKVTGT--QPITCTWMKF 37
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 28.4 bits (62), Expect = 0.14
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 22 YTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+ + Q+ L +K ++ D+G Y CQV
Sbjct: 35 AVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE 74
Score = 26.5 bits (57), Expect = 0.71
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 83 GGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVL 141
G P + +++G + L C ++ P I W+ + V Q S + L
Sbjct: 1 GAPVKLTVSQGQPVKLNCSVEGM--EEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSL 58
Query: 142 LSVS 145
SV
Sbjct: 59 KSVE 62
>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 28.9 bits (64), Expect = 0.16
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 22 YTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP 65
S F+C K NE T ++ + IY C++ P
Sbjct: 58 LQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVMYP 101
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules
[TaxId: 9606]}
Length = 91
Score = 28.3 bits (62), Expect = 0.19
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 80 QIIGGP-DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+I+ P M + +G + +C P P
Sbjct: 1 RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQ 38
Score = 25.2 bits (54), Expect = 2.3
Identities = 7/30 (23%), Positives = 8/30 (26%)
Query: 32 CIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
T +I Q D G Y V
Sbjct: 46 HQVTTTKYKSTFEISSVQASDEGNYSVVVE 75
>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens)
[TaxId: 9606]}
Length = 80
Score = 27.9 bits (62), Expect = 0.19
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 90 NKGSTMNLTCVIKHSPEPPPAIYWLHNTEV 119
+ GS + LTC + S WL V
Sbjct: 10 DLGSKILLTCSLNDSATEVTGHRWLKGGVV 39
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 28.3 bits (62), Expect = 0.20
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 21 GYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
G +++ H ++ L I+ K D Y C
Sbjct: 43 GEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAE 83
Score = 23.7 bits (50), Expect = 8.7
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ N G ++ L C P P + W +
Sbjct: 14 NATANLGQSVTLVCDADGF--PEPTMSWTKD 42
>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human
(Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 28.6 bits (63), Expect = 0.20
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 22 YTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST-TPPIGISMYLSVVEPITQ 80
+ R + + P+N + + I + DSG Y+C + + + + L V+E
Sbjct: 55 VSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLEHHHH 114
Query: 81 I 81
Sbjct: 115 H 115
>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 97
Score = 27.6 bits (60), Expect = 0.30
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 4/95 (4%)
Query: 76 EPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFV 135
EP+ Q + DM G + C+ + P + N + N R + +
Sbjct: 3 EPVPQYVS-KDMMAKAGDVTMIYCMYGSN--PMGYPNYFKNGKDVNGNPEDRITRHNRTS 59
Query: 136 KRLVVLLSVSI-VELTWKLEATYILAGTYTNSFNL 169
+ ++ + E + E + +S L
Sbjct: 60 GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKL 94
>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing
protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 27.5 bits (60), Expect = 0.35
Identities = 7/76 (9%), Positives = 19/76 (25%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
Q+ W +S Y+ + + ++ Y ++
Sbjct: 20 QLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAAN 79
Query: 65 PIGISMYLSVVEPITQ 80
+G + + T
Sbjct: 80 KMGFGPFSEKCDITTA 95
>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal
fragment {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 27.7 bits (61), Expect = 0.37
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 12/84 (14%)
Query: 6 ISWVRHRDIHLLTVSGYTYTSDQ------RFSCIHKPQNEDWTLQIKYPQKRDSGIYECQ 59
++ +R D + V TY C L I+ + D+G+Y C+
Sbjct: 34 VTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICK 93
Query: 60 VSTTPPIGISMY------LSVVEP 77
V P + + V++P
Sbjct: 94 VELMYPPPYYLGIGNGAQIYVIDP 117
>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car),
domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 27.6 bits (60), Expect = 0.43
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 26 SDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPI-GISMYLSVV 75
+ + ++ D ++ + Q D G Y+C+V P + ++L V+
Sbjct: 73 KGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 123
>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus
musculus), beta-chain [TaxId: 10090]}
Length = 110
Score = 27.3 bits (60), Expect = 0.46
Identities = 5/38 (13%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 28 QRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP 65
+ +P E ++L ++ + +Y C
Sbjct: 62 DGYE-ASRPSQEQFSLILESATPSQTSVYFCASGGGGT 98
>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 27.2 bits (59), Expect = 0.46
Identities = 10/53 (18%), Positives = 18/53 (33%)
Query: 22 YTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLSV 74
+ S + L ++ Q DSG Y C + P + + + V
Sbjct: 41 WVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDV 93
>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 98
Score = 27.0 bits (59), Expect = 0.49
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 6/60 (10%)
Query: 5 QISWVRHRDIHLLTVSGY-TYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT 63
++ W R + + F + L+IK + DSG Y V +T
Sbjct: 28 EVRWERGSTLVAEFKRKMKPFLKSGAFE-----ILANGDLKIKNLTRDDSGTYNVTVYST 82
>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda
constant domain, CL-lambda {Hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 104
Score = 26.9 bits (59), Expect = 0.52
Identities = 8/67 (11%), Positives = 18/67 (26%), Gaps = 2/67 (2%)
Query: 91 KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELT 150
+ + L C++ + W N + + LS++ +
Sbjct: 19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQ-- 76
Query: 151 WKLEATY 157
WK
Sbjct: 77 WKSHNRV 83
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 91
Score = 26.7 bits (58), Expect = 0.58
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 75 VEPITQIIGGPDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
P + D Y G + L C + P P I W
Sbjct: 3 YAPSIKAKFPADTYALTGQMVTLECFAFGN--PVPQIKWRKL 42
Score = 25.2 bits (54), Expect = 2.5
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 24 YTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
S K + + L I+ D G YEC+
Sbjct: 38 KWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAE 75
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 26.7 bits (58), Expect = 0.66
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 32 CIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+K +N+ W+L ++ D G Y C V
Sbjct: 53 GGYKVRNQHWSLIMESVVPSDKGNYTCVVE 82
Score = 26.7 bits (58), Expect = 0.77
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 89 INKGSTMNLTCVIKHSPEPPPAIYWLHNTE 118
+ +T+ C + P P + WL N +
Sbjct: 17 VPAANTVKFRCPAGGN--PMPTMRWLKNGK 44
>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 4
[TaxId: 10090]}
Length = 107
Score = 26.6 bits (58), Expect = 0.84
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 1 MSLAQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQV 60
+ Q + + S RFS D+TL I + D G+Y CQ
Sbjct: 33 LHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVETEDFGMYFCQQ 90
Query: 61 STTPP 65
+ + P
Sbjct: 91 ANSWP 95
>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 26.2 bits (56), Expect = 1.2
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
I W + + + L + +G + F + + +QI + +G Y C+V+
Sbjct: 34 TIKWFKGKWMDLASKAGKHLQLKETFERHSR--VYTFEMQIIKAKDNFAGNYRCEVTYKD 91
Query: 65 P-IGISMYLSVVEP 77
S L V E
Sbjct: 92 KFDSCSFDLEVHES 105
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 25.6 bits (55), Expect = 1.4
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 32 CIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+ + D+ L I + D G Y +
Sbjct: 48 YMKRYNGNDYGLTINRVKGDDKGEYTVRAK 77
Score = 24.5 bits (52), Expect = 4.4
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ +G + N C + S P +
Sbjct: 10 GTEVGEGQSANFYCRVIASSPPVVTWHKDDR 40
>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 93
Score = 25.7 bits (55), Expect = 1.5
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
+ I G T NL +P+P +
Sbjct: 11 KIKIKAGFTHNLEVDFIGAPDPTATWTVGDS 41
>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2
(ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 25.7 bits (55), Expect = 1.5
Identities = 6/64 (9%), Positives = 16/64 (25%), Gaps = 1/64 (1%)
Query: 77 PITQIIGGPDMYINKGSTMNLTCVIKHS-PEPPPAIYWLHNTEVSQLNLMQRESESSSFV 135
P I+ + G + + C + P ++ E + + +
Sbjct: 2 PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEA 61
Query: 136 KRLV 139
Sbjct: 62 TATF 65
>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 25.6 bits (56), Expect = 1.6
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 39 EDWTLQIKYPQKRDSGIYECQV 60
++ TL+IK+ + D IY+ +
Sbjct: 61 KNGTLKIKHLKTDDQDIYKVSI 82
>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 25.6 bits (55), Expect = 1.8
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 32 CIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
I + TL I D Y+C V
Sbjct: 53 YIFESIGAKRTLTISQCSLADDAAYQCVVG 82
Score = 24.4 bits (52), Expect = 4.8
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 85 PDMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
P ++KG + LT + + WL N
Sbjct: 14 PAYQVSKGHKIRLTVELAD---HDAEVKWLKN 42
>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a,
CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 107
Score = 25.4 bits (55), Expect = 2.1
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 39 EDWTLQIKYPQKRDSGIYECQVSTTP 64
+ +L + +D G+Y ++
Sbjct: 69 SNGSLLFQMITMKDMGVYTLDMTDEN 94
>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C,
different domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 25.4 bits (54), Expect = 2.1
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTT- 63
+ W + + + L + G + K + L I Q +G Y C+VST
Sbjct: 38 VVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYL--FELHITDAQPAFTGGYRCEVSTKD 95
Query: 64 PPIGISMYLSVVEPI 78
+ L+V E +
Sbjct: 96 KFDCSNFNLTVHEAM 110
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 25.4 bits (54), Expect = 2.3
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 37 QNEDWTLQIKYPQKRDSGIYECQVSTTPPIGI---SMYLSVVE 76
+ ++ +K D G+Y V P+G ++ + V++
Sbjct: 90 TKDRSIFTVEGAEKEDEGVYTVTVKN--PVGEDQVNLTVKVID 130
Score = 24.6 bits (52), Expect = 4.9
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYW 113
+ + G+ + L I P P
Sbjct: 18 TIVVVAGNKLRLDVPISGDPAPTVIWQK 45
>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 1.1
[TaxId: 10090]}
Length = 113
Score = 25.4 bits (55), Expect = 2.4
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 5 QISWVRHRDIHLLTVSGYTYTSDQ-----RFSCIHKPQNEDWTLQIKYPQKRDSGIYECQ 59
+ W + + Y ++ RFS D+TL+I + D GIY C
Sbjct: 38 YLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSG--SGSGTDFTLKISRVEAEDLGIYYCF 95
Query: 60 VSTTPP 65
+ P
Sbjct: 96 QGSHFP 101
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 24.8 bits (53), Expect = 2.4
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYWLHN 116
D + GS + +CV P P
Sbjct: 10 DTEADIGSDLRWSCVASGKPRPAVRWLRDGQ 40
Score = 24.1 bits (51), Expect = 5.3
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 22 YTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
Q + ++ + L+ DSG+Y+C
Sbjct: 34 RWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAE 73
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules
[TaxId: 9606]}
Length = 98
Score = 25.2 bits (54), Expect = 2.6
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYW 113
+ +GS + + P+P Y
Sbjct: 13 SQTVGQGSDAHFRVRVVGKPDPECEWYK 40
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 24.9 bits (53), Expect = 2.7
Identities = 4/28 (14%), Positives = 7/28 (25%)
Query: 86 DMYINKGSTMNLTCVIKHSPEPPPAIYW 113
+G + C + S P
Sbjct: 10 PQEFKEGEDAVIVCDVVSSLPPTIIWKH 37
Score = 23.3 bits (49), Expect = 9.0
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 28 QRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+ + LQI+ +K D G Y C+
Sbjct: 43 ILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGR 76
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein
phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 25.0 bits (53), Expect = 3.0
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 37 QNEDWTLQIKYPQKRDSGIYECQVS 61
+ + + KRD+G Y C +
Sbjct: 56 RRFIASFNVVNTTKRDAGKYRCMIR 80
>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 96
Score = 24.8 bits (53), Expect = 3.7
Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 5/63 (7%)
Query: 6 ISWVRHRDIHLL-----TVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQV 60
+ W R L S R + +L I + D+ Y C
Sbjct: 24 LQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCAT 83
Query: 61 STT 63
TT
Sbjct: 84 DTT 86
>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor
TrkA, different domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 107
Score = 24.5 bits (52), Expect = 4.0
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 32 CIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIG---ISMYLSVVEP 77
L++ P ++G Y + P G S+ + ++
Sbjct: 54 PAANETVRHGCLRLNQPTHVNNGNYTLLAAN--PFGQASASIMAAFMDN 100
>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant
domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 24.6 bits (53), Expect = 4.3
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 91 KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELT 150
++LTC+I + W N + ++ + + + L+V
Sbjct: 17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSN-- 74
Query: 151 WKLEATY 157
W+ T+
Sbjct: 75 WEAGNTF 81
>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Engineered (including hybrid
species)}
Length = 106
Score = 24.6 bits (53), Expect = 4.4
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 6 ISWVRHRDIH---LLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62
++W + + LL T + ++TL I Q D Y CQ
Sbjct: 32 LAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHCQHYA 91
Query: 63 TPP 65
Sbjct: 92 GYS 94
>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 1.1
[TaxId: 10090]}
Length = 112
Score = 24.2 bits (52), Expect = 5.1
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 5 QISWVRHRD---IHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
++W+ R L G S D+TL+I + D G+Y C
Sbjct: 37 FLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDLGVYYCWQG 96
Query: 62 TTPP 65
T P
Sbjct: 97 THFP 100
>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon
constant domain 2, CH2-epsilon {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 24.3 bits (52), Expect = 5.4
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 90 NKGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVEL 149
+ T+ L C++ I WL + +V ++L + + L++S
Sbjct: 19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKH- 77
Query: 150 TWKLEATY 157
W + TY
Sbjct: 78 -WLSDRTY 84
>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 3.2 [TaxId: 10090]}
Length = 104
Score = 24.3 bits (52), Expect = 5.6
Identities = 8/59 (13%), Positives = 12/59 (20%)
Query: 8 WVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPI 66
S ++L I + D+ Y CQ P
Sbjct: 36 QKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYCQQWGRNPT 94
>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 4 [TaxId: 10090]}
Length = 107
Score = 24.3 bits (52), Expect = 5.8
Identities = 13/58 (22%), Positives = 16/58 (27%)
Query: 8 WVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPP 65
+ L S S D+TL I Q D Y CQ + P
Sbjct: 38 QKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFCQQYNSYP 95
>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1
(ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 24.1 bits (51), Expect = 5.9
Identities = 5/47 (10%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 34 HKPQNEDWTLQIKYPQKRDSGIYECQVSTT-PPIGISMYLSVVEPIT 79
+ + T + + + C+ P G+ ++ + P
Sbjct: 53 AVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQ 99
>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 23.8 bits (50), Expect = 6.9
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 92 GSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELTW 151
G+ LTC + PP W + V N + S+S + L+
Sbjct: 17 GNRAVLTCSEQDGS-PPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA 75
Query: 152 KLEATY 157
Y
Sbjct: 76 SDTGEY 81
>d1ucda_ d.124.1.1 (A:) Ribonuclease MC1 {Bitter gourd (Momordica
charantia) [TaxId: 3673]}
Length = 190
Score = 24.3 bits (52), Expect = 7.1
Identities = 10/51 (19%), Positives = 17/51 (33%)
Query: 23 TYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMYLS 73
S Q+ +T+ +PQ+ + + C S IS S
Sbjct: 13 AVCSFQKSGSCPGSGLRTFTIHGLWPQQSGTSLTNCPGSPFDITKISHLQS 63
>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma
constant domain 3, CH3-gamma {Human (Homo sapiens)
[TaxId: 9606]}
Length = 102
Score = 23.8 bits (51), Expect = 7.2
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 91 KGSTMNLTCVIKHSPEPPPAIYWLHNTEVSQLNLMQRESESSSFVKRLVVLLSVSIVELT 150
+ ++LTC++K A+ W N + S L L+V
Sbjct: 18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSR-- 75
Query: 151 WKLEATY 157
W+ +
Sbjct: 76 WQQGNVF 82
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)
[TaxId: 9103]}
Length = 102
Score = 23.7 bits (50), Expect = 7.2
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 32 CIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
I + + +L I D Y C+
Sbjct: 56 QIDYDEEGNCSLTISEVCGDDDAKYTCKAV 85
>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 24.1 bits (51), Expect = 7.4
Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 1/84 (1%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGI-YECQVST 62
+SW L + Q S + + + Y V
Sbjct: 32 VTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRA 91
Query: 63 TPPIGISMYLSVVEPITQIIGGPD 86
P G+S + +P+ GP
Sbjct: 92 INPQGLSDPSPMSDPVRTQDSGPS 115
>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 112
Score = 23.9 bits (51), Expect = 7.5
Identities = 6/57 (10%), Positives = 15/57 (26%)
Query: 8 WVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTP 64
+ + + + ED+ L++ + +Y C S
Sbjct: 39 MGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFCASSYVG 95
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 23.8 bits (50), Expect = 7.6
Identities = 12/54 (22%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 8 WVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
I +LT + S P++ D DSG Y CQ
Sbjct: 36 SWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLI--FDPVTAFDSGEYYCQAQ 87
>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa
variable domain, VL-kappa {Mouse (Mus musculus),
cluster 4 [TaxId: 10090]}
Length = 107
Score = 23.9 bits (51), Expect = 7.8
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 6 ISWVRHRDIHLLTVSGYTYT---SDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVST 62
+SW + + + Y + + D+TL I Q D Y C S
Sbjct: 33 VSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYCGQSY 92
Query: 63 TPPI 66
+ P+
Sbjct: 93 SSPL 96
>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 94
Score = 23.5 bits (49), Expect = 8.3
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 32 CIHKPQNEDWTLQIKYPQKRDSGIYECQVS 61
+ ++ +L PQ D G Y+C
Sbjct: 49 HNAALRKDEGSLVFLRPQASDEGHYQCFAE 78
>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 23.7 bits (50), Expect = 9.0
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
Query: 4 AQISWVRHRDIHLLTVSGYTYTSDQRFSCIHKPQNEDWTLQIKY--PQKRDSGIYECQVS 61
+ W I + GY S P N++ + + +V
Sbjct: 18 TTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVV 77
Query: 62 TTPPIGISMYLSVVEPIT 79
G S ++++P+T
Sbjct: 78 GVNIAGRSEPATLLQPVT 95
>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 113
Score = 23.6 bits (50), Expect = 9.5
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 22 YTYTSDQRFSCIHKPQNEDWTLQIKYPQKRDSGIYECQVSTTPPIGISMY------LSVV 75
+ + N + + + DS +Y C S + + L+VV
Sbjct: 53 RNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALYLCASSLADRVNTEAFFGQGTRLTVV 112
Query: 76 E 76
E
Sbjct: 113 E 113
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.403
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 606,021
Number of extensions: 25184
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 115
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)