Query psy1827
Match_columns 148
No_of_seqs 162 out of 1022
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 17:23:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 1E-36 2.2E-41 271.0 5.4 119 23-147 397-516 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 3.8E-36 8.2E-41 263.0 5.3 126 21-147 413-549 (821)
3 cd01382 MYSc_type_VI Myosin mo 100.0 3.2E-35 7E-40 255.0 5.4 122 25-147 353-484 (717)
4 cd01383 MYSc_type_VIII Myosin 100.0 6.2E-35 1.3E-39 251.8 6.6 119 24-147 334-452 (677)
5 cd01381 MYSc_type_VII Myosin m 100.0 1.1E-34 2.4E-39 250.2 6.9 119 24-147 331-449 (671)
6 cd01387 MYSc_type_XV Myosin mo 100.0 1.8E-34 3.9E-39 249.1 7.0 124 23-147 315-448 (677)
7 cd01379 MYSc_type_III Myosin m 100.0 1.2E-34 2.6E-39 249.2 5.6 123 24-147 338-460 (653)
8 cd01378 MYSc_type_I Myosin mot 100.0 3.2E-34 7E-39 247.6 6.3 119 23-146 334-453 (674)
9 cd01384 MYSc_type_XI Myosin mo 100.0 3.7E-34 8E-39 246.9 6.4 118 24-147 337-454 (674)
10 cd01385 MYSc_type_IX Myosin mo 100.0 6.1E-34 1.3E-38 246.3 6.3 120 23-147 342-464 (692)
11 cd01377 MYSc_type_II Myosin mo 100.0 1.3E-33 2.7E-38 244.5 6.6 118 24-147 344-462 (693)
12 cd01380 MYSc_type_V Myosin mot 100.0 2E-33 4.4E-38 243.1 6.6 118 24-147 335-454 (691)
13 KOG0164|consensus 100.0 2.7E-33 5.8E-38 236.1 2.7 126 21-147 321-462 (1001)
14 smart00242 MYSc Myosin. Large 100.0 1.2E-32 2.5E-37 238.3 6.1 118 24-147 339-456 (677)
15 cd00124 MYSc Myosin motor doma 100.0 2.5E-32 5.5E-37 236.4 6.9 123 24-147 316-449 (679)
16 PF00063 Myosin_head: Myosin h 100.0 1.4E-31 3E-36 232.4 5.2 120 23-147 332-452 (689)
17 cd01386 MYSc_type_XVIII Myosin 100.0 2.1E-31 4.6E-36 232.2 6.0 119 23-147 342-481 (767)
18 KOG0161|consensus 100.0 3.5E-31 7.5E-36 243.5 5.8 117 24-147 418-535 (1930)
19 KOG0163|consensus 100.0 3.1E-29 6.7E-34 212.7 4.4 121 26-147 408-538 (1259)
20 KOG0162|consensus 99.9 7.1E-29 1.5E-33 209.9 3.8 116 24-144 352-468 (1106)
21 KOG0160|consensus 99.9 5.3E-27 1.1E-31 204.0 5.2 134 12-147 305-454 (862)
22 KOG4229|consensus 99.9 3.4E-24 7.4E-29 190.2 5.6 123 24-147 379-514 (1062)
23 KOG2297|consensus 99.7 1.4E-16 3.1E-21 125.3 7.0 78 1-78 216-293 (412)
24 cd01380 MYSc_type_V Myosin mot 84.4 0.58 1.3E-05 41.7 1.8 42 11-52 302-347 (691)
25 cd01387 MYSc_type_XV Myosin mo 83.4 0.59 1.3E-05 41.5 1.4 37 22-60 330-366 (677)
26 smart00242 MYSc Myosin. Large 82.1 0.62 1.3E-05 41.4 1.0 89 12-104 307-401 (677)
27 cd01384 MYSc_type_XI Myosin mo 81.4 0.74 1.6E-05 40.9 1.2 82 21-106 318-401 (674)
28 PF00063 Myosin_head: Myosin h 80.9 0.56 1.2E-05 41.6 0.3 92 11-106 300-398 (689)
29 cd01381 MYSc_type_VII Myosin m 80.9 0.86 1.9E-05 40.5 1.5 92 11-106 298-396 (671)
30 cd01383 MYSc_type_VIII Myosin 79.9 1.5 3.3E-05 39.0 2.6 86 11-100 301-393 (677)
31 cd01377 MYSc_type_II Myosin mo 79.3 1.2 2.5E-05 39.8 1.8 42 11-52 311-356 (693)
32 cd00124 MYSc Myosin motor doma 78.1 0.86 1.9E-05 40.5 0.6 74 21-96 329-410 (679)
33 cd01378 MYSc_type_I Myosin mot 75.6 1.7 3.8E-05 38.6 1.8 42 11-52 298-347 (674)
34 COG5022 Myosin heavy chain [Cy 74.7 2.6 5.6E-05 40.3 2.7 82 21-106 379-462 (1463)
35 cd01379 MYSc_type_III Myosin m 72.8 2.8 6.1E-05 37.2 2.4 42 11-52 305-350 (653)
36 cd01385 MYSc_type_IX Myosin mo 68.6 3.5 7.6E-05 36.8 2.1 41 12-52 311-355 (692)
37 PF04761 Phage_Treg: Lactococc 66.5 24 0.00052 20.7 4.8 40 14-53 6-45 (57)
38 PF06777 DUF1227: Protein of u 61.8 21 0.00046 25.7 4.6 68 2-95 50-117 (146)
39 KOG0162|consensus 59.2 13 0.00029 33.6 3.8 78 26-111 338-422 (1106)
40 KOG0161|consensus 58.6 11 0.00024 37.6 3.5 66 21-86 399-466 (1930)
41 PTZ00014 myosin-A; Provisional 54.5 13 0.00029 34.0 3.2 28 21-48 429-456 (821)
42 PF14413 Thg1C: Thg1 C termina 49.9 33 0.00072 23.7 4.0 65 24-92 3-70 (120)
43 cd01382 MYSc_type_VI Myosin mo 46.8 19 0.00041 32.5 2.9 29 21-49 365-393 (717)
44 cd01386 MYSc_type_XVIII Myosin 46.5 9.8 0.00021 34.5 1.1 76 31-106 334-413 (767)
45 PHA02503 putative transcriptio 46.4 59 0.0013 19.0 4.9 40 14-53 6-45 (57)
46 PF10256 Erf4: Golgin subfamil 44.9 94 0.002 20.9 6.1 81 25-113 25-105 (118)
47 KOG0160|consensus 36.7 29 0.00063 31.9 2.5 40 21-60 334-373 (862)
48 KOG0163|consensus 31.5 22 0.00047 32.6 0.8 40 19-60 417-456 (1259)
49 PF12968 DUF3856: Domain of Un 30.1 91 0.002 22.1 3.6 17 70-86 45-61 (144)
50 PF03474 DMA: DMRTA motif; In 26.3 54 0.0012 18.1 1.6 20 3-24 11-30 (39)
51 PF11272 DUF3072: Protein of u 26.0 71 0.0015 19.2 2.1 40 6-46 16-55 (57)
52 PHA01351 putative minor struct 25.2 1.1E+02 0.0025 27.9 4.1 36 12-47 252-297 (1070)
53 PF00784 MyTH4: MyTH4 domain; 23.8 64 0.0014 21.6 2.0 45 2-46 52-96 (114)
54 PF02209 VHP: Villin headpiece 23.7 1.2E+02 0.0026 16.3 2.6 31 10-46 3-33 (36)
55 PHA00212 putative transcriptio 23.5 1.7E+02 0.0038 17.4 5.0 38 15-52 9-47 (63)
56 COG2153 ElaA Predicted acyltra 23.1 37 0.0008 24.6 0.6 28 85-112 117-144 (155)
57 PF09832 DUF2059: Uncharacteri 22.7 1.7E+02 0.0038 17.1 3.9 34 11-44 10-43 (64)
58 PHA01632 hypothetical protein 21.1 1E+02 0.0022 18.6 2.1 15 6-20 25-39 (64)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1e-36 Score=271.00 Aligned_cols=119 Identities=33% Similarity=0.595 Sum_probs=101.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHhhhcCCCcchhhhhhhhccchhHHHHHHHHhhHHHH
Q psy1827 23 LADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLLCINYANEHLQYYFNQHVFQYE 102 (148)
Q Consensus 23 l~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~~~~~~~f~~~ 102 (148)
+|.+++++|+..|.|+++.+|++|+.--. ..+++|| +||+| ||||+.|||||||||||||+|||+|++|+|+.|
T Consensus 397 rdslAK~lY~~lFdwiV~rIN~sL~~~~~-~~~fIGV----LDIyG-FEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklE 470 (1463)
T COG5022 397 RDSLAKALYSNLFDWIVDRINKSLDHSAA-ASNFIGV----LDIYG-FEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLE 470 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccc-cccceeE----Eeecc-hhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 46677777777777777777777764222 1244454 49999 999999999999999999999999999999999
Q ss_pred HhhhhccCcceeeccccCcHHHHHhhhc-CCCcccccchhhhhccC
Q psy1827 103 QEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAKILL 147 (148)
Q Consensus 103 ~~~y~~Egi~~~~~~~~dn~~~l~li~~-~p~Gll~lLDee~~~p~ 147 (148)
|++|.+|||+|.+|+|.||++|||||++ .|.|||++|||||++|.
T Consensus 471 QEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~ 516 (1463)
T COG5022 471 QEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPH 516 (1463)
T ss_pred HHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCC
Confidence 9999999999999999999999999996 37899999999999984
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=3.8e-36 Score=263.03 Aligned_cols=126 Identities=25% Similarity=0.307 Sum_probs=103.3
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cccchh---------hHHHHHHHhhhcCCCcchhhhhhhhccchhH
Q psy1827 21 KGLADIVKLHMAQASQEAKKELQEQLEEQISE--GASIKD---------IVADIREIANKHCIPDQELIVLLCINYANEH 89 (148)
Q Consensus 21 ~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~--~~~~~~---------ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~ 89 (148)
+|.+.|.+.+...++...||+|+|+||+++|+ ...++. -..+|+||+| ||+|+.|||||||||||||+
T Consensus 413 ~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~G-FE~f~~NSfEQLcINy~NEk 491 (821)
T PTZ00014 413 AGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFG-FEVFKNNSLEQLFINITNEM 491 (821)
T ss_pred eCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEeccc-ccccCcchHHHHHHHHHHHH
Confidence 34445555555666666666666666666665 111111 1126669999 99999999999999999999
Q ss_pred HHHHHHHhhHHHHHhhhhccCcceeeccccCcHHHHHhhhcCCCcccccchhhhhccC
Q psy1827 90 LQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKILL 147 (148)
Q Consensus 90 l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLDee~~~p~ 147 (148)
||++|++++|..++++|.+|||+|..++|.||++|||||+++|.|||++|||||++|+
T Consensus 492 LQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~ 549 (821)
T PTZ00014 492 LQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPG 549 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999996
No 3
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=3.2e-35 Score=255.05 Aligned_cols=122 Identities=26% Similarity=0.486 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ccch--------hhHHHHHHHhhhcCCCcchhhhhhhhccchhHHHHHH
Q psy1827 25 DIVKLHMAQASQEAKKELQEQLEEQISEG--ASIK--------DIVADIREIANKHCIPDQELIVLLCINYANEHLQYYF 94 (148)
Q Consensus 25 ~i~~~l~~~~~~~~rd~L~k~L~~~l~~~--~~~~--------~ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~~~ 94 (148)
.+.+.+...++...||+|+|.||+++|+. ..++ .-..+|+|+|| ||.|+.|+|||||||||||+||++|
T Consensus 353 ~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~IgiLDIfG-FE~f~~NsfEQLcINyaNEkLQ~~f 431 (717)
T cd01382 353 VIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFETSSNFIGVLDIAG-FEYFEHNSFEQFCINYCNEKLQQFF 431 (717)
T ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeccc-cccCCCCCHHHHhhhhhHHHHHHHH
Confidence 34444555555555666666666555551 1111 11125669999 9999999999999999999999999
Q ss_pred HHhhHHHHHhhhhccCcceeeccccCcHHHHHhhhcCCCcccccchhhhhccC
Q psy1827 95 NQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKILL 147 (148)
Q Consensus 95 ~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLDee~~~p~ 147 (148)
++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|+
T Consensus 432 ~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~ 484 (717)
T cd01382 432 NERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQ 484 (717)
T ss_pred HHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999996
No 4
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=6.2e-35 Score=251.84 Aligned_cols=119 Identities=36% Similarity=0.558 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHhhhcCCCcchhhhhhhhccchhHHHHHHHHhhHHHHH
Q psy1827 24 ADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLLCINYANEHLQYYFNQHVFQYEQ 103 (148)
Q Consensus 24 ~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~~~~~~~f~~~~ 103 (148)
|.+++.+|.+.|.|+++.+|+.|...-......+ +|+|+|| ||.|+.|||||||||||||+||++|++++|..++
T Consensus 334 dalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~I----giLDI~G-FE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~Eq 408 (677)
T cd01383 334 DALAKSIYASLFDWLVEQINKSLEVGKRRTGRSI----SILDIYG-FESFDKNSFEQFCINYANERLQQHFNRHLFKLEQ 408 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccceE----EEeeccc-cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554443211112233 5569999 9999999999999999999999999999999999
Q ss_pred hhhhccCcceeeccccCcHHHHHhhhcCCCcccccchhhhhccC
Q psy1827 104 EEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKILL 147 (148)
Q Consensus 104 ~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLDee~~~p~ 147 (148)
++|.+|||+|..|+|.||++|||||+++|.|||++|||||++|+
T Consensus 409 eeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~ 452 (677)
T cd01383 409 EEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPN 452 (677)
T ss_pred HHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCC
Confidence 99999999999999999999999999999999999999999996
No 5
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.1e-34 Score=250.22 Aligned_cols=119 Identities=32% Similarity=0.494 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHhhhcCCCcchhhhhhhhccchhHHHHHHHHhhHHHHH
Q psy1827 24 ADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLLCINYANEHLQYYFNQHVFQYEQ 103 (148)
Q Consensus 24 ~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~~~~~~~f~~~~ 103 (148)
|.+++.+|.+.|.|+++.+|+.|..........+ +|+|+|| ||+|+.|+|||||||||||+||++|++++|..++
T Consensus 331 dalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~I----giLDIfG-FE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq 405 (671)
T cd01381 331 DAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSI----GVLDIFG-FENFDVNSFEQLCINFANENLQQFFVQHIFKLEQ 405 (671)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccceE----EEEecCC-cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555442211112233 5559999 9999999999999999999999999999999999
Q ss_pred hhhhccCcceeeccccCcHHHHHhhhcCCCcccccchhhhhccC
Q psy1827 104 EEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKILL 147 (148)
Q Consensus 104 ~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLDee~~~p~ 147 (148)
++|.+|||+|..++|.||++|||||+++|.|||++|||||++|+
T Consensus 406 ~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~ 449 (671)
T cd01381 406 EEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPK 449 (671)
T ss_pred HHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCC
Confidence 99999999999999999999999999999999999999999986
No 6
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1.8e-34 Score=249.14 Aligned_cols=124 Identities=33% Similarity=0.486 Sum_probs=101.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cccchhh--------HHHHHHHhhhcCCCcchhhhhhhhccchhHHHH
Q psy1827 23 LADIVKLHMAQASQEAKKELQEQLEEQISE--GASIKDI--------VADIREIANKHCIPDQELIVLLCINYANEHLQY 92 (148)
Q Consensus 23 l~~i~~~l~~~~~~~~rd~L~k~L~~~l~~--~~~~~~i--------i~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~ 92 (148)
.+.+.+.+...++...||+|+|.||.++|+ ...++.. -.+|+|+|| ||.|+.|||||||||||||+||+
T Consensus 315 ~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~IgILDIfG-FE~f~~NsfEQLcINyaNEkLQ~ 393 (677)
T cd01387 315 REKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPTQDTLSIAILDIYG-FEDLSFNSFEQLCINYANENLQY 393 (677)
T ss_pred CceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCc-cccCCCCCHHHHHhHHHHHHHHH
Confidence 344555555556666666666666666665 1111111 125669999 99999999999999999999999
Q ss_pred HHHHhhHHHHHhhhhccCcceeeccccCcHHHHHhhhcCCCcccccchhhhhccC
Q psy1827 93 YFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKILL 147 (148)
Q Consensus 93 ~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLDee~~~p~ 147 (148)
+|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|+
T Consensus 394 ~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~ 448 (677)
T cd01387 394 LFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQ 448 (677)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999996
No 7
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.2e-34 Score=249.22 Aligned_cols=123 Identities=31% Similarity=0.479 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHhhhcCCCcchhhhhhhhccchhHHHHHHHHhhHHHHH
Q psy1827 24 ADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLLCINYANEHLQYYFNQHVFQYEQ 103 (148)
Q Consensus 24 ~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~~~~~~~f~~~~ 103 (148)
|.+++.+|.+.|.|+++.+|+.|...-...........+|+|++| ||.|+.|+|||||||||||+||++|++++|..++
T Consensus 338 dalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~G-FE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq 416 (653)
T cd01379 338 DAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFG-FENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQ 416 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccc-cccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554321110000111235669999 9999999999999999999999999999999999
Q ss_pred hhhhccCcceeeccccCcHHHHHhhhcCCCcccccchhhhhccC
Q psy1827 104 EEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKILL 147 (148)
Q Consensus 104 ~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLDee~~~p~ 147 (148)
++|.+|||+|..++|.||++|||||+++|.|||++|||||++|+
T Consensus 417 ~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~ 460 (653)
T cd01379 417 QEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQ 460 (653)
T ss_pred HHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999986
No 8
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=3.2e-34 Score=247.58 Aligned_cols=119 Identities=28% Similarity=0.473 Sum_probs=98.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHhhhcCCCcchhhhhhhhccchhHHHHHHHHhhHHHH
Q psy1827 23 LADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLLCINYANEHLQYYFNQHVFQYE 102 (148)
Q Consensus 23 l~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~~~~~~~f~~~ 102 (148)
.|.+++.+|.+.|.|++..+|+.|..........+ +|+|+|| ||.|+.|+|||||||||||+||++|++++|..+
T Consensus 334 rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~I----gILDIfG-FE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~e 408 (674)
T cd01378 334 RDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVI----GVLDIYG-FEIFQKNSFEQFCINYVNEKLQQIFIELTLKAE 408 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceE----EEEeccc-ccccccccHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554312222333 4559999 999999999999999999999999999999999
Q ss_pred HhhhhccCcceeeccccCcHHHHHhhhc-CCCcccccchhhhhcc
Q psy1827 103 QEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAKIL 146 (148)
Q Consensus 103 ~~~y~~Egi~~~~~~~~dn~~~l~li~~-~p~Gll~lLDee~~~p 146 (148)
+++|.+|||+|..++|.||++|+|||++ +|.|||++|||||++|
T Consensus 409 q~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p 453 (674)
T cd01378 409 QEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATP 453 (674)
T ss_pred HHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCC
Confidence 9999999999999999999999999999 8999999999999999
No 9
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=3.7e-34 Score=246.95 Aligned_cols=118 Identities=32% Similarity=0.492 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHhhhcCCCcchhhhhhhhccchhHHHHHHHHhhHHHHH
Q psy1827 24 ADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLLCINYANEHLQYYFNQHVFQYEQ 103 (148)
Q Consensus 24 ~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~~~~~~~f~~~~ 103 (148)
|.+++.+|.+.|.|+++.+|+.|...- .....+ +|+|+|| ||.|+.|+|||||||||||+||++|++++|..++
T Consensus 337 dalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~I----giLDI~G-FE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq 410 (674)
T cd01384 337 DALAKTIYSRLFDWLVNKINSSIGQDP-DSKSLI----GVLDIYG-FESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQ 410 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeEE----EEEeccc-ccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555444210 011223 5569999 9999999999999999999999999999999999
Q ss_pred hhhhccCcceeeccccCcHHHHHhhhcCCCcccccchhhhhccC
Q psy1827 104 EEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKILL 147 (148)
Q Consensus 104 ~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLDee~~~p~ 147 (148)
++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|+
T Consensus 411 ~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~ 454 (674)
T cd01384 411 EEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPK 454 (674)
T ss_pred HHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999986
No 10
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=6.1e-34 Score=246.30 Aligned_cols=120 Identities=36% Similarity=0.561 Sum_probs=99.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CccchhhHHHHHHHhhhcCCCcc-hhhhhhhhccchhHHHHHHHHhhH
Q psy1827 23 LADIVKLHMAQASQEAKKELQEQLEEQISE--GASIKDIVADIREIANKHCIPDQ-ELIVLLCINYANEHLQYYFNQHVF 99 (148)
Q Consensus 23 l~~i~~~l~~~~~~~~rd~L~k~L~~~l~~--~~~~~~ii~~i~d~~g~~ei~e~-n~~eqlciN~~nE~l~~~~~~~~f 99 (148)
.|.+++.+|++.|.|+++.+|..|...-.. ....+ +|+|+|| ||.|+. |+|||||||||||+||++|++++|
T Consensus 342 rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~I----giLDI~G-FE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf 416 (692)
T cd01385 342 RDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSI----GVLDIFG-FEDFGRCNSFEQLCINYANEQLQYYFNQHIF 416 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEE----EEEecCc-cccCCCCCCHHHHhhHHHHHHHHHHHHHHHH
Confidence 355556666666666666666655432110 11233 5559999 899999 999999999999999999999999
Q ss_pred HHHHhhhhccCcceeeccccCcHHHHHhhhcCCCcccccchhhhhccC
Q psy1827 100 QYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKILL 147 (148)
Q Consensus 100 ~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLDee~~~p~ 147 (148)
..++++|.+|||+|..|+|.||++|||||++||.|||++|||||++|+
T Consensus 417 ~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~ 464 (692)
T cd01385 417 KLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPH 464 (692)
T ss_pred HHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCC
Confidence 999999999999999999999999999999999999999999999986
No 11
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=1.3e-33 Score=244.53 Aligned_cols=118 Identities=34% Similarity=0.555 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHhhhcCCCcchhhhhhhhccchhHHHHHHHHhhHHHHH
Q psy1827 24 ADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLLCINYANEHLQYYFNQHVFQYEQ 103 (148)
Q Consensus 24 ~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~~~~~~~f~~~~ 103 (148)
|.+++.+|.+.|.|+++.+|+.|... ......+ +|+|||| ||.|+.|+|||||||||||+||++|++++|+.++
T Consensus 344 Dalak~lY~~LF~wiV~~IN~~l~~~-~~~~~~I----giLDIfG-FE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq 417 (693)
T cd01377 344 GALAKALYERLFLWLVKRINKTLDTK-QQRAYFI----GVLDIAG-FEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQ 417 (693)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCceE----EEEeccc-ccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444322 0012223 5569999 9999999999999999999999999999999999
Q ss_pred hhhhccCcceeeccc-cCcHHHHHhhhcCCCcccccchhhhhccC
Q psy1827 104 EEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKILL 147 (148)
Q Consensus 104 ~~y~~Egi~~~~~~~-~dn~~~l~li~~~p~Gll~lLDee~~~p~ 147 (148)
++|.+|||+|..++| .||++|||||+++|.|||++|||||++|+
T Consensus 418 ~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~ 462 (693)
T cd01377 418 EEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPK 462 (693)
T ss_pred HHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCC
Confidence 999999999999999 59999999999999999999999999985
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.98 E-value=2e-33 Score=243.14 Aligned_cols=118 Identities=34% Similarity=0.550 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--hcCccchhhHHHHHHHhhhcCCCcchhhhhhhhccchhHHHHHHHHhhHHH
Q psy1827 24 ADIVKLHMAQASQEAKKELQEQLEEQI--SEGASIKDIVADIREIANKHCIPDQELIVLLCINYANEHLQYYFNQHVFQY 101 (148)
Q Consensus 24 ~~i~~~l~~~~~~~~rd~L~k~L~~~l--~~~~~~~~ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~~~~~~~f~~ 101 (148)
|.+++.+|.+.|.|+++.+|+.|...- ......+ +|+|||| ||.|+.|+|||||||||||+||++|++++|..
T Consensus 335 dalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~I----giLDI~G-FE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~ 409 (691)
T cd01380 335 DALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFI----GVLDIYG-FETFEKNSFEQFCINYANEKLQQQFNQHVFKL 409 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceE----EEEecCc-ccccCCCCHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 445555555555555555555544321 0111223 4559999 99999999999999999999999999999999
Q ss_pred HHhhhhccCcceeeccccCcHHHHHhhhcCCCcccccchhhhhccC
Q psy1827 102 EQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKILL 147 (148)
Q Consensus 102 ~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLDee~~~p~ 147 (148)
++++|.+|||+|..++|.||++|||||++ |.|||++|||||++|+
T Consensus 410 eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~ 454 (691)
T cd01380 410 EQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPK 454 (691)
T ss_pred HHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCC
Confidence 99999999999999999999999999996 6999999999999986
No 13
>KOG0164|consensus
Probab=99.97 E-value=2.7e-33 Score=236.12 Aligned_cols=126 Identities=30% Similarity=0.471 Sum_probs=115.6
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ccchh--------------hHHHHHHHhhhcCCCcchhhhhhhhc
Q psy1827 21 KGLADIVKLHMAQASQEAKKELQEQLEEQISEG--ASIKD--------------IVADIREIANKHCIPDQELIVLLCIN 84 (148)
Q Consensus 21 ~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~--~~~~~--------------ii~~i~d~~g~~ei~e~n~~eqlciN 84 (148)
+|.+.+.+-+.+.++.+.||+|+|++|+++|.. ..+++ .+.+++|++| |++|+.|||||||||
T Consensus 321 a~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiyg-feif~~NSFEQfcIN 399 (1001)
T KOG0164|consen 321 AGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYG-FEIFQDNSFEQFCIN 399 (1001)
T ss_pred hccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeee-EEeecCCcHHHHHHH
Confidence 678999999999999999999999999999981 11111 2337789999 999999999999999
Q ss_pred cchhHHHHHHHHhhHHHHHhhhhccCcceeeccccCcHHHHHhhhcCCCcccccchhhhhccC
Q psy1827 85 YANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKILL 147 (148)
Q Consensus 85 ~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLDee~~~p~ 147 (148)
||||+|||.|++.+++.||+||.+|||.|.+|+|.+|.-++||++.+..||++||||+|..|+
T Consensus 400 YCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G 462 (1001)
T KOG0164|consen 400 YCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPG 462 (1001)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999885
No 14
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.97 E-value=1.2e-32 Score=238.33 Aligned_cols=118 Identities=36% Similarity=0.601 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHhhhcCCCcchhhhhhhhccchhHHHHHHHHhhHHHHH
Q psy1827 24 ADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLLCINYANEHLQYYFNQHVFQYEQ 103 (148)
Q Consensus 24 ~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~~~~~~~f~~~~ 103 (148)
|.+++.+|.+.|.|+++.+|+.|...- .....+ +|+|+|| ||.++.|+|||||||||||+||++|++++|..++
T Consensus 339 d~lak~lY~~lF~wiV~~iN~~l~~~~-~~~~~I----giLDifG-FE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq 412 (677)
T smart00242 339 DALAKALYSRLFDWLVKRINKSLSFKD-GSTYFI----GVLDIYG-FEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQ 412 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-CCceEE----EEEeccc-ccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443211 011223 5559999 9999999999999999999999999999999999
Q ss_pred hhhhccCcceeeccccCcHHHHHhhhcCCCcccccchhhhhccC
Q psy1827 104 EEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKILL 147 (148)
Q Consensus 104 ~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLDee~~~p~ 147 (148)
++|.+|||+|..++|.||++|||||+++|.|||++|||||++|+
T Consensus 413 ~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~ 456 (677)
T smart00242 413 EEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPK 456 (677)
T ss_pred HHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999985
No 15
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.97 E-value=2.5e-32 Score=236.43 Aligned_cols=123 Identities=37% Similarity=0.615 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cccch---------hhHHHHHHHhhhcCCCcchhhhhhhhccchhHHHH
Q psy1827 24 ADIVKLHMAQASQEAKKELQEQLEEQISE--GASIK---------DIVADIREIANKHCIPDQELIVLLCINYANEHLQY 92 (148)
Q Consensus 24 ~~i~~~l~~~~~~~~rd~L~k~L~~~l~~--~~~~~---------~ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~ 92 (148)
+.+.+.+...++...||+|+|.||.++|+ ...++ ....+|+|++| ||.++.|+|||||||||||+||+
T Consensus 316 ~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~G-FE~f~~NsfEQLcINy~NEkLq~ 394 (679)
T cd00124 316 EVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFG-FEIFEKNSFEQLCINYANEKLQQ 394 (679)
T ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccc-cccCCCCCHHHHhcccchHHHHH
Confidence 34444444555555555555555555555 11111 11125669999 99999999999999999999999
Q ss_pred HHHHhhHHHHHhhhhccCcceeeccccCcHHHHHhhhcCCCcccccchhhhhccC
Q psy1827 93 YFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKILL 147 (148)
Q Consensus 93 ~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLDee~~~p~ 147 (148)
+|++++|..++++|.+|||.|..++|.||++|+|||+++|.||+++|||||++|+
T Consensus 395 ~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~ 449 (679)
T cd00124 395 FFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPK 449 (679)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999985
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.97 E-value=1.4e-31 Score=232.35 Aligned_cols=120 Identities=38% Similarity=0.598 Sum_probs=95.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHhhhcCCCcchhhhhhhhccchhHHHHHHHHhhHHHH
Q psy1827 23 LADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLLCINYANEHLQYYFNQHVFQYE 102 (148)
Q Consensus 23 l~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~~~~~~~f~~~ 102 (148)
+|.+++.+|.+.|.|++..+|..|...-......++|+ |+|| ||.+..|+|||||||||||+||++|++++|..+
T Consensus 332 rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgIL----Di~G-FE~~~~N~fEQLciNyanErLq~~f~~~~f~~e 406 (689)
T PF00063_consen 332 RDALAKALYSRLFDWIVERINSALSPSESENSSSIGIL----DIFG-FENFSVNSFEQLCINYANERLQQFFNQHIFKSE 406 (689)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEE----EEE--B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHhhhhccccccccccccCccc----Cccc-cccccccccccceeeeccccccceeeeeccccc
Confidence 45666666666666666666666665442333445555 9999 999999999999999999999999999999999
Q ss_pred HhhhhccCcceeeccc-cCcHHHHHhhhcCCCcccccchhhhhccC
Q psy1827 103 QEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKILL 147 (148)
Q Consensus 103 ~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p~Gll~lLDee~~~p~ 147 (148)
+++|.+|||.|..++| .||++|+|||+++|.|||++|||||++|+
T Consensus 407 ~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~ 452 (689)
T PF00063_consen 407 QEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPR 452 (689)
T ss_dssp HHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTT
T ss_pred ccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhccc
Confidence 9999999999999999 99999999999999999999999999986
No 17
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.97 E-value=2.1e-31 Score=232.22 Aligned_cols=119 Identities=20% Similarity=0.273 Sum_probs=100.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHhhhcCCCcc------hhhhhhhhccchhHHHHHHHH
Q psy1827 23 LADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQ------ELIVLLCINYANEHLQYYFNQ 96 (148)
Q Consensus 23 l~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii~~i~d~~g~~ei~e~------n~~eqlciN~~nE~l~~~~~~ 96 (148)
.|.+++.+|.+.|.|+++.+|+.|...-.. ...+ +|+|||| ||+|++ |+|||||||||||+||++|++
T Consensus 342 rdalaK~lY~rLF~wiV~~IN~~l~~~~~~-~~~I----giLDIfG-FE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~ 415 (767)
T cd01386 342 LEGMASGLYSELFAAVVSLINRSISSSHHS-IASI----MLVDTPG-FQNPASQGKDRAATFEELCHNYLQERLQLLFHH 415 (767)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-CcEE----EEEeccc-ccccccccccCCCCHHHHhhhhhHHHHHHHHHH
Confidence 577888888888888888888877643211 2333 4559999 899985 899999999999999999999
Q ss_pred hhHHHHHhhhhccCcceeeccc-cCcHHHHHhhhcCC--------------CcccccchhhhhccC
Q psy1827 97 HVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP--------------NGLLCVLDDQAKILL 147 (148)
Q Consensus 97 ~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p--------------~Gll~lLDee~~~p~ 147 (148)
++|..++++|.+|||+|..+.+ .||++||+||+++| .|||++|||||++|+
T Consensus 416 ~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec~~p~ 481 (767)
T cd01386 416 RTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEALVPG 481 (767)
T ss_pred HHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHhhcCCC
Confidence 9999999999999999986555 79999999999865 499999999999996
No 18
>KOG0161|consensus
Probab=99.97 E-value=3.5e-31 Score=243.53 Aligned_cols=117 Identities=33% Similarity=0.575 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHhhhcCCCcchhhhhhhhccchhHHHHHHHHhhHHHHH
Q psy1827 24 ADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLLCINYANEHLQYYFNQHVFQYEQ 103 (148)
Q Consensus 24 ~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~~~~~~~f~~~~ 103 (148)
..+++.+|.+.|.|+++.+|++|... -+..+++||+ ||+| |+||+.|||+|+||||+||+||++|++|+|..++
T Consensus 418 ~alAk~lYerlF~wlV~riN~sld~~-~~~~~fIgvL----DiaG-FEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEq 491 (1930)
T KOG0161|consen 418 EALAKALYERLFGWLVKRINKSLDSK-QQRDYFIGVL----DIAG-FEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQ 491 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc-cccCCcceee----eecc-ccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhH
Confidence 44777788888888888888888776 3345667666 9999 9999999999999999999999999999999999
Q ss_pred hhhhccCcceeeccc-cCcHHHHHhhhcCCCcccccchhhhhccC
Q psy1827 104 EEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKILL 147 (148)
Q Consensus 104 ~~y~~Egi~~~~~~~-~dn~~~l~li~~~p~Gll~lLDee~~~p~ 147 (148)
++|.+|||.|.+|+| .|-+||||||+ +|+||+|+|||||++|+
T Consensus 492 eeY~~EgIew~fidfG~Dlq~~idLIE-kp~Gi~slLdEEc~~Pk 535 (1930)
T KOG0161|consen 492 EEYQREGIEWDFIDFGLDLQPTIDLIE-KPMGILSLLDEECVVPK 535 (1930)
T ss_pred HHHHHhCCceeeeccccchhhhHHHHh-chhhHHHHHHHHHhcCC
Confidence 999999999999999 79999999999 58899999999999996
No 19
>KOG0163|consensus
Probab=99.95 E-value=3.1e-29 Score=212.70 Aligned_cols=121 Identities=31% Similarity=0.520 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--Cccchh--------hHHHHHHHhhhcCCCcchhhhhhhhccchhHHHHHHH
Q psy1827 26 IVKLHMAQASQEAKKELQEQLEEQISE--GASIKD--------IVADIREIANKHCIPDQELIVLLCINYANEHLQYYFN 95 (148)
Q Consensus 26 i~~~l~~~~~~~~rd~L~k~L~~~l~~--~~~~~~--------ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~~~~ 95 (148)
|--.++.-++...||+|+|++|..+|+ +..++. -..+|+|+.| |+.|.+|||||||||||||+||+||+
T Consensus 408 IrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe~St~fiGVLDiAG-FEyf~~NSFEQFCINyCNEKLQ~FFN 486 (1259)
T KOG0163|consen 408 IRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFEKSTFFIGVLDIAG-FEYFAVNSFEQFCINYCNEKLQKFFN 486 (1259)
T ss_pred EEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccccccceeEEEeecc-ceeeecccHHHHHHHHHHHHHHHHHH
Confidence 444566777778888888888888887 122211 1126779999 99999999999999999999999999
Q ss_pred HhhHHHHHhhhhccCcceeeccccCcHHHHHhhhcCCCcccccchhhhhccC
Q psy1827 96 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKILL 147 (148)
Q Consensus 96 ~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLDee~~~p~ 147 (148)
+++++.+|+.|..||+.++.|.|+||++||+||+.|..|||.|||||+++|+
T Consensus 487 erILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~ 538 (1259)
T KOG0163|consen 487 ERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPK 538 (1259)
T ss_pred HHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCC
Confidence 9999999999999999999999999999999999999999999999999997
No 20
>KOG0162|consensus
Probab=99.95 E-value=7.1e-29 Score=209.92 Aligned_cols=116 Identities=27% Similarity=0.435 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHhhhcCCCcchhhhhhhhccchhHHHHHHHHhhHHHHH
Q psy1827 24 ADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLLCINYANEHLQYYFNQHVFQYEQ 103 (148)
Q Consensus 24 ~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~~~~~~~f~~~~ 103 (148)
|.+++-+|+++|.|+++.+|++|..--.+++..+| |+||+| ||||++|+|||+||||.||+|||.|++.+++.||
T Consensus 352 DAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIG----iLDIYG-FEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQ 426 (1106)
T KOG0162|consen 352 DALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIG----ILDIYG-FEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQ 426 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccee----eEEeee-eeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 55666666666666666666666543222333444 459999 9999999999999999999999999999999999
Q ss_pred hhhhccCcceeeccccCcHHHHHhhhc-CCCcccccchhhhh
Q psy1827 104 EEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAK 144 (148)
Q Consensus 104 ~~y~~Egi~~~~~~~~dn~~~l~li~~-~p~Gll~lLDee~~ 144 (148)
++|.+|||.|.+|.|.||.-++|||+. +|+|||++|||.|-
T Consensus 427 EeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~A 468 (1106)
T KOG0162|consen 427 EEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCA 468 (1106)
T ss_pred HHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHH
Confidence 999999999999999999999999986 58899999999885
No 21
>KOG0160|consensus
Probab=99.93 E-value=5.3e-27 Score=203.96 Aligned_cols=134 Identities=36% Similarity=0.543 Sum_probs=112.1
Q ss_pred HHHHHHHHhc----CchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cccch----------hhHHHHHHHhhhcCCCcc
Q psy1827 12 EYFRTVFEEK----GLADIVKLHMAQASQEAKKELQEQLEEQISE--GASIK----------DIVADIREIANKHCIPDQ 75 (148)
Q Consensus 12 ~~~~~~f~~~----gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~--~~~~~----------~ii~~i~d~~g~~ei~e~ 75 (148)
+.+...+.+. +-+.|++.+...++...||.+.|.||+.+|+ ...++ .-.++++|++| |+.|+.
T Consensus 305 ~~l~~~L~~r~i~~~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYg-FEsF~~ 383 (862)
T KOG0160|consen 305 EALEQWLSKRKILTARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYG-FESFEV 383 (862)
T ss_pred HHHHHHHHHHHhhcccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehccc-cccccc
Confidence 4444444442 3367777888888888888888888888887 11111 11236779999 999999
Q ss_pred hhhhhhhhccchhHHHHHHHHhhHHHHHhhhhccCcceeeccccCcHHHHHhhhcCCCcccccchhhhhccC
Q psy1827 76 ELIVLLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKILL 147 (148)
Q Consensus 76 n~~eqlciN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLDee~~~p~ 147 (148)
|+|+||||||+||+||+.|++|+|+.++++|..|+|+|..++|.||++|+++|+. |.|++++|||+|++|.
T Consensus 384 nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~ 454 (862)
T KOG0160|consen 384 NSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPK 454 (862)
T ss_pred CcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCC
Confidence 9999999999999999999999999999999999999999999999999999996 8999999999999985
No 22
>KOG4229|consensus
Probab=99.89 E-value=3.4e-24 Score=190.17 Aligned_cols=123 Identities=33% Similarity=0.584 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------ccc-hhhHHHHHHHhhhcCCCcchhhhhhhhccchhHH
Q psy1827 24 ADIVKLHMAQASQEAKKELQEQLEEQISEG------------ASI-KDIVADIREIANKHCIPDQELIVLLCINYANEHL 90 (148)
Q Consensus 24 ~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~------------~~~-~~ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l 90 (148)
+.+...+...++..+||.++|.||.++|.. ..+ ...-.+++|+|| |+.++.|+|+|+|||+|||++
T Consensus 379 e~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFg-fE~f~~nsfEq~~in~Ane~l 457 (1062)
T KOG4229|consen 379 ELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFG-FENFERNSFEQLCINLANEQL 457 (1062)
T ss_pred hhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhc-ccchhhhHHHHHHHHHHHHHH
Confidence 556666777777777778888887777761 111 112247889999 888899999999999999999
Q ss_pred HHHHHHhhHHHHHhhhhccCcceeeccccCcHHHHHhhhcCCCcccccchhhhhccC
Q psy1827 91 QYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKILL 147 (148)
Q Consensus 91 ~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLDee~~~p~ 147 (148)
|.||++|+|..++++|..|+|+|..+.|.||..|+|+|..+|+||+.+|||||.||+
T Consensus 458 Q~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~ 514 (1062)
T KOG4229|consen 458 QYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPK 514 (1062)
T ss_pred HHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCc
Confidence 999999999999999999999999999999999999999999999999999999996
No 23
>KOG2297|consensus
Probab=99.67 E-value=1.4e-16 Score=125.29 Aligned_cols=78 Identities=42% Similarity=0.733 Sum_probs=74.8
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHhhhcCCCcchhh
Q psy1827 1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELI 78 (148)
Q Consensus 1 ~~~~P~~kr~~~~~~~~f~~~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii~~i~d~~g~~ei~e~n~~ 78 (148)
|+||||||||.|||.+||+++||.++++|+..|++...|++|++.|.++++++.|+++|+.+|++.+....++++..+
T Consensus 216 meffPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi 293 (412)
T KOG2297|consen 216 MEFFPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVI 293 (412)
T ss_pred HHhcCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEE
Confidence 689999999999999999999999999999999999999999999999999999999999999999998999977644
No 24
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=84.43 E-value=0.58 Score=41.68 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=32.8
Q ss_pred HHHHHHHHHh----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1827 11 DEYFRTVFEE----KGLADIVKLHMAQASQEAKKELQEQLEEQISE 52 (148)
Q Consensus 11 ~~~~~~~f~~----~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~ 52 (148)
.+.+.+.+.. .|.+.+.+.+...++...||+|+|+||+++|+
T Consensus 302 ~~~L~~~l~~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~LF~ 347 (691)
T cd01380 302 ASDLRKWLVKRQIVTRSEKIVKPLTKEQAIVARDALAKHIYSKLFD 347 (691)
T ss_pred HHHHHHHHHhCEEEECCeeEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445544443 34567778888999999999999999999999
No 25
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=83.44 E-value=0.59 Score=41.54 Aligned_cols=37 Identities=11% Similarity=-0.003 Sum_probs=29.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhH
Q psy1827 22 GLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60 (148)
Q Consensus 22 gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii 60 (148)
..|.+++.+|.+.|.|+++.+|+.|... .....++|+
T Consensus 330 ~rdalak~lY~~lF~wiV~~iN~~l~~~--~~~~~IgIL 366 (677)
T cd01387 330 ARDAIAKVLYALLFNWLITRVNALVSPT--QDTLSIAIL 366 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCceEEEE
Confidence 4589999999999999999999999752 223445544
No 26
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=82.13 E-value=0.62 Score=41.39 Aligned_cols=89 Identities=12% Similarity=0.042 Sum_probs=51.5
Q ss_pred HHHHHHHHh----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CccchhhHHHHHHHhhhcCCCcchhhhhhhhcc
Q psy1827 12 EYFRTVFEE----KGLADIVKLHMAQASQEAKKELQEQLEEQISE--GASIKDIVADIREIANKHCIPDQELIVLLCINY 85 (148)
Q Consensus 12 ~~~~~~f~~----~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~--~~~~~~ii~~i~d~~g~~ei~e~n~~eqlciN~ 85 (148)
+.+.+.+.. .|.+.+.+.+...++...||+|+|.||.++|. ...++..+..-.+.-..--+.|.=|||.+..|
T Consensus 307 ~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~~N- 385 (677)
T smart00242 307 EELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFEVN- 385 (677)
T ss_pred HHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccccC-
Confidence 445544443 45567778888899999999999999999998 23333333100000001114455678777654
Q ss_pred chhHHHHHHHHhhHHHHHh
Q psy1827 86 ANEHLQYYFNQHVFQYEQE 104 (148)
Q Consensus 86 ~nE~l~~~~~~~~f~~~~~ 104 (148)
.+-|++++.+-+.=|.
T Consensus 386 ---sfEQLcINyaNEkLq~ 401 (677)
T smart00242 386 ---SFEQLCINYANEKLQQ 401 (677)
T ss_pred ---CHHHHHhHhhHHHHHH
Confidence 3555554444333333
No 27
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=81.42 E-value=0.74 Score=40.91 Aligned_cols=82 Identities=9% Similarity=0.024 Sum_probs=46.4
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CccchhhHHHHHHHhhhcCCCcchhhhhhhhccchhHHHHHHHHhh
Q psy1827 21 KGLADIVKLHMAQASQEAKKELQEQLEEQISE--GASIKDIVADIREIANKHCIPDQELIVLLCINYANEHLQYYFNQHV 98 (148)
Q Consensus 21 ~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~--~~~~~~ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~~~~~~~ 98 (148)
.|.+.+.+.+...++...||+|+|.||+++|+ ...++..+..-.+....--+.|.=|||.+-.| .+-|++++.+
T Consensus 318 ~~~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~N----sfEQLcINya 393 (674)
T cd01384 318 TPEEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTN----SFEQFCINLT 393 (674)
T ss_pred eCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccCcC----CHHHHHhhhh
Confidence 34466777788899999999999999999999 23333333100000000113355567766544 4555554444
Q ss_pred HHHHHhhh
Q psy1827 99 FQYEQEEY 106 (148)
Q Consensus 99 f~~~~~~y 106 (148)
=+.=|..|
T Consensus 394 NEkLQ~~f 401 (674)
T cd01384 394 NEKLQQHF 401 (674)
T ss_pred HHHHHHHH
Confidence 33333333
No 28
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=80.91 E-value=0.56 Score=41.56 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=48.7
Q ss_pred HHHHHHHHHh----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CccchhhHHHHH-HHhhhcCCCcchhhhhhhh
Q psy1827 11 DEYFRTVFEE----KGLADIVKLHMAQASQEAKKELQEQLEEQISE--GASIKDIVADIR-EIANKHCIPDQELIVLLCI 83 (148)
Q Consensus 11 ~~~~~~~f~~----~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~--~~~~~~ii~~i~-d~~g~~ei~e~n~~eqlci 83 (148)
.+.+.+.+.. .|.+.+...+...++...||+|+|+||.++|. ...++..+..-. +....--|.|.=|||.+..
T Consensus 300 ~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~ 379 (689)
T PF00063_consen 300 SEELEKALTTRTIKVGGETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSV 379 (689)
T ss_dssp HHHHHHHHHSEEEESTTSEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SS
T ss_pred HHHHHHHHhhccccccccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccc
Confidence 4556666643 45566778889999999999999999999999 233333331100 0001111456667888854
Q ss_pred ccchhHHHHHHHHhhHHHHHhhh
Q psy1827 84 NYANEHLQYYFNQHVFQYEQEEY 106 (148)
Q Consensus 84 N~~nE~l~~~~~~~~f~~~~~~y 106 (148)
| .+.+++++..-+.=+..|
T Consensus 380 N----~fEQLciNyanErLq~~f 398 (689)
T PF00063_consen 380 N----SFEQLCINYANERLQQFF 398 (689)
T ss_dssp B-----HHHHHHHHHHHHHHHHH
T ss_pred c----ccccceeeecccccccee
Confidence 4 344444444333333333
No 29
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=80.87 E-value=0.86 Score=40.48 Aligned_cols=92 Identities=7% Similarity=-0.017 Sum_probs=52.7
Q ss_pred HHHHHHHHHh----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CccchhhHHHH-HHHhhhcCCCcchhhhhhhh
Q psy1827 11 DEYFRTVFEE----KGLADIVKLHMAQASQEAKKELQEQLEEQISE--GASIKDIVADI-REIANKHCIPDQELIVLLCI 83 (148)
Q Consensus 11 ~~~~~~~f~~----~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~--~~~~~~ii~~i-~d~~g~~ei~e~n~~eqlci 83 (148)
.+.+.+.+.. .|.+.+.+.+...++...||+|+|+||+++|+ ...++..+..- .+.-..--+.|.=|||.+-.
T Consensus 298 ~~~L~~~lt~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~ 377 (671)
T cd01381 298 IQDLMDALTSRTIFTRGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDV 377 (671)
T ss_pred HHHHhhhhceEEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCC
Confidence 3455555543 34567778889999999999999999999999 23333333100 00000011335556776654
Q ss_pred ccchhHHHHHHHHhhHHHHHhhh
Q psy1827 84 NYANEHLQYYFNQHVFQYEQEEY 106 (148)
Q Consensus 84 N~~nE~l~~~~~~~~f~~~~~~y 106 (148)
| .+-|++++.+-+.=|..|
T Consensus 378 N----sfEQLcINy~NEkLQ~~f 396 (671)
T cd01381 378 N----SFEQLCINFANENLQQFF 396 (671)
T ss_pred C----CHHHHHHHHHHHHHHHHH
Confidence 4 555655554444333333
No 30
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=79.91 E-value=1.5 Score=39.02 Aligned_cols=86 Identities=12% Similarity=0.030 Sum_probs=50.5
Q ss_pred HHHHHHHHHh----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CccchhhHHHHHHHhh-hcCCCcchhhhhhhh
Q psy1827 11 DEYFRTVFEE----KGLADIVKLHMAQASQEAKKELQEQLEEQISE--GASIKDIVADIREIAN-KHCIPDQELIVLLCI 83 (148)
Q Consensus 11 ~~~~~~~f~~----~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~--~~~~~~ii~~i~d~~g-~~ei~e~n~~eqlci 83 (148)
.+.+.+.+.. .|.+.+.+.+...++...||+|+|+||+++|+ ...++..+..-.+..+ .--+.|-=|||.+-.
T Consensus 301 ~~~L~~~l~~~~~~~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~ 380 (677)
T cd01383 301 IEDLMLALSTRKMHVNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDK 380 (677)
T ss_pred HHHHHHHhhhcEEEeCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCC
Confidence 3455555543 35567888889999999999999999999999 2333333311000000 011334556776654
Q ss_pred ccchhHHHHHHHHhhHH
Q psy1827 84 NYANEHLQYYFNQHVFQ 100 (148)
Q Consensus 84 N~~nE~l~~~~~~~~f~ 100 (148)
| .+-|++++..=+
T Consensus 381 N----sfEQLcINyaNE 393 (677)
T cd01383 381 N----SFEQFCINYANE 393 (677)
T ss_pred C----CHHHHHHHHHHH
Confidence 4 455555544433
No 31
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=79.35 E-value=1.2 Score=39.84 Aligned_cols=42 Identities=12% Similarity=-0.003 Sum_probs=32.5
Q ss_pred HHHHHHHHHh----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1827 11 DEYFRTVFEE----KGLADIVKLHMAQASQEAKKELQEQLEEQISE 52 (148)
Q Consensus 11 ~~~~~~~f~~----~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~ 52 (148)
.+.+.+.+.. .|.+.+.+.+...++...||+|+|+||.++|+
T Consensus 311 ~~~L~~~l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~ 356 (693)
T cd01377 311 SADLLKALLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFL 356 (693)
T ss_pred HHHHHHHhcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445444443 35566777888899999999999999999999
No 32
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=78.07 E-value=0.86 Score=40.49 Aligned_cols=74 Identities=11% Similarity=0.023 Sum_probs=45.1
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHH--hhh--cC---C-CcchhhhhhhhccchhHHHH
Q psy1827 21 KGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREI--ANK--HC---I-PDQELIVLLCINYANEHLQY 92 (148)
Q Consensus 21 ~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii~~i~d~--~g~--~e---i-~e~n~~eqlciN~~nE~l~~ 92 (148)
..+|.+++.+|.+.|.|+++.+|+.|... ......++|+. |-.+ +.. || | +-.+.+.|+.+...=+.-|.
T Consensus 329 ~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~~IgiLD-i~GFE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~ 406 (679)
T cd00124 329 DSRDSLAKALYSRLFDWIVSRINSSLKPK-DGRSLFIGILD-IFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQE 406 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCceeeEEe-ccccccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999764 22234455442 1122 110 11 1 23445677776665555555
Q ss_pred HHHH
Q psy1827 93 YFNQ 96 (148)
Q Consensus 93 ~~~~ 96 (148)
-|.+
T Consensus 407 ~y~~ 410 (679)
T cd00124 407 EYQE 410 (679)
T ss_pred HHHh
Confidence 4443
No 33
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=75.62 E-value=1.7 Score=38.59 Aligned_cols=42 Identities=5% Similarity=0.019 Sum_probs=33.2
Q ss_pred HHHHHHHHHh----cCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1827 11 DEYFRTVFEE----KGL----ADIVKLHMAQASQEAKKELQEQLEEQISE 52 (148)
Q Consensus 11 ~~~~~~~f~~----~gl----~~i~~~l~~~~~~~~rd~L~k~L~~~l~~ 52 (148)
.+.+...+.. .|. +.+.+.+...++...||+|+|.||+++|+
T Consensus 298 ~~~L~~~l~~~~~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~ 347 (674)
T cd01378 298 PSELEKALTSRTIETGGGGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFD 347 (674)
T ss_pred HHHHHHHhcccEEEeCCCCCceeEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555552 233 77888889999999999999999999999
No 34
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=74.66 E-value=2.6 Score=40.30 Aligned_cols=82 Identities=12% Similarity=0.000 Sum_probs=51.1
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CccchhhHHHHHHHhhhcCCCcchhhhhhhhccchhHHHHHHHHhh
Q psy1827 21 KGLADIVKLHMAQASQEAKKELQEQLEEQISE--GASIKDIVADIREIANKHCIPDQELIVLLCINYANEHLQYYFNQHV 98 (148)
Q Consensus 21 ~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~--~~~~~~ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~~~~~~~ 98 (148)
+|...|+..+...|+..+||+|+|.||+.+|+ +..++..+.+-....++--+.|--|||-|=-| .+-|++++.+
T Consensus 379 t~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFEkN----SFEQlCINYt 454 (1463)
T COG5022 379 TGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKN----SFEQLCINYT 454 (1463)
T ss_pred cCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhccC----cHHHHHHhhh
Confidence 56678888888899999999999999999999 23333333111111111124566788887644 3555555555
Q ss_pred HHHHHhhh
Q psy1827 99 FQYEQEEY 106 (148)
Q Consensus 99 f~~~~~~y 106 (148)
-+.=|.++
T Consensus 455 NEKLQQ~F 462 (1463)
T COG5022 455 NEKLQQFF 462 (1463)
T ss_pred hHHHHHHH
Confidence 44434333
No 35
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=72.85 E-value=2.8 Score=37.21 Aligned_cols=42 Identities=10% Similarity=0.210 Sum_probs=33.5
Q ss_pred HHHHHHHHHh----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1827 11 DEYFRTVFEE----KGLADIVKLHMAQASQEAKKELQEQLEEQISE 52 (148)
Q Consensus 11 ~~~~~~~f~~----~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~ 52 (148)
.+.+...+.. .+.+.+.+.+...++...||+|+|+||+++|+
T Consensus 305 ~~~L~~~L~~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~ 350 (653)
T cd01379 305 SDELQEALTSHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFS 350 (653)
T ss_pred HHHHHHHhcccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555543 34577888888999999999999999999999
No 36
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=68.59 E-value=3.5 Score=36.82 Aligned_cols=41 Identities=7% Similarity=0.050 Sum_probs=32.1
Q ss_pred HHHHHHHHh----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1827 12 EYFRTVFEE----KGLADIVKLHMAQASQEAKKELQEQLEEQISE 52 (148)
Q Consensus 12 ~~~~~~f~~----~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~ 52 (148)
+.+.+.+.. .+.+.+.+.+...++...||+|+|+||+++|+
T Consensus 311 ~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~ 355 (692)
T cd01385 311 ETLMEALTKKRTVTVNETLILPYSLSEAITARDAMAKCLYSALFD 355 (692)
T ss_pred HHHHHHhccCeEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444555543 34567777788889999999999999999999
No 37
>PF04761 Phage_Treg: Lactococcus bacteriophage putative transcription regulator; InterPro: IPR006848 This family represents a number of putative transcription repressor proteins found in several Lactococcus bacteriophages. Horizontal transfer may account for the presence of similar proteins in Lactococcus species [].
Probab=66.49 E-value=24 Score=20.67 Aligned_cols=40 Identities=20% Similarity=0.116 Sum_probs=32.2
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1827 14 FRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEG 53 (148)
Q Consensus 14 ~~~~f~~~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~ 53 (148)
.-+|+++.-..+-++|++++.....+|-|+.+|-.++++.
T Consensus 6 ~i~h~~q~v~q~sve~yk~kl~~~s~~flq~slipql~ew 45 (57)
T PF04761_consen 6 TINHLGQTVYQESVEFYKEKLSVDSKDFLQNSLIPQLYEW 45 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3455555455777899999999999999999999999873
No 38
>PF06777 DUF1227: Protein of unknown function (DUF1227); InterPro: IPR010643 This domain represents a conserved region within a number of eukaryotic DNA repair helicases.; GO: 0005634 nucleus
Probab=61.79 E-value=21 Score=25.68 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=42.3
Q ss_pred CCCCCCCCCHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHhhhcCCCcchhhhhh
Q psy1827 2 EFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLL 81 (148)
Q Consensus 2 ~~~P~~kr~~~~~~~~f~~~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii~~i~d~~g~~ei~e~n~~eql 81 (148)
+..|-|-|..+||-...+. ++.|++.+.- .+... .++....+..+.+..+ ++.-
T Consensus 50 eaVPGnIR~AeHFv~flkR-----~veylk~rlr----------v~~v~--~e~P~sFL~~~~~~~~---------id~k 103 (146)
T PF06777_consen 50 EAVPGNIRRAEHFVAFLKR-----FVEYLKTRLR----------VQHVI--SESPLSFLQHLKDETF---------IDRK 103 (146)
T ss_pred hcCCchHHhHHHHHHHHHH-----HHHHHHHHhh----------hccee--ecCHHHHHHHHHHHhC---------CCcH
Confidence 4579999999999998875 8888877750 11001 1244455544444322 3444
Q ss_pred hhccchhHHHHHHH
Q psy1827 82 CINYANEHLQYYFN 95 (148)
Q Consensus 82 ciN~~nE~l~~~~~ 95 (148)
-.-+|.|||+.+..
T Consensus 104 ~LrFc~eRL~sLl~ 117 (146)
T PF06777_consen 104 PLRFCSERLSSLLR 117 (146)
T ss_pred HHHHHHHHHHHHHH
Confidence 44566789988775
No 39
>KOG0162|consensus
Probab=59.15 E-value=13 Score=33.65 Aligned_cols=78 Identities=9% Similarity=0.053 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--CccchhhHHHHHHHhhh---cC--CCcchhhhhhhhccchhHHHHHHHHhh
Q psy1827 26 IVKLHMAQASQEAKKELQEQLEEQISE--GASIKDIVADIREIANK---HC--IPDQELIVLLCINYANEHLQYYFNQHV 98 (148)
Q Consensus 26 i~~~l~~~~~~~~rd~L~k~L~~~l~~--~~~~~~ii~~i~d~~g~---~e--i~e~n~~eqlciN~~nE~l~~~~~~~~ 98 (148)
+--.|...|+...||+|++++|.++|+ +..++..+ .++.. ++ |.+.-+||-|- |-...|++++.+
T Consensus 338 ~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam----~~~~~~~~~sIGiLDIYGFEIFe----~N~FEQ~CINfV 409 (1106)
T KOG0162|consen 338 IHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAM----QAFKGSEEYSIGILDIYGFEIFE----NNGFEQFCINFV 409 (1106)
T ss_pred EEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCccccceeeEEeeeeeecc----cCCHHHHHHHHH
Confidence 444567789999999999999999999 34444433 22211 11 33445666554 334566666666
Q ss_pred HHHHHhhhhccCc
Q psy1827 99 FQYEQEEYNKEGI 111 (148)
Q Consensus 99 f~~~~~~y~~Egi 111 (148)
-+.-|..+.+.-+
T Consensus 410 NEKLQQIFIeLTL 422 (1106)
T KOG0162|consen 410 NEKLQQIFIELTL 422 (1106)
T ss_pred HHHHHHHHHHHhh
Confidence 6555655544433
No 40
>KOG0161|consensus
Probab=58.57 E-value=11 Score=37.56 Aligned_cols=66 Identities=14% Similarity=0.002 Sum_probs=50.9
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CccchhhHHHHHHHhhhcCCCcchhhhhhhhccc
Q psy1827 21 KGLADIVKLHMAQASQEAKKELQEQLEEQISE--GASIKDIVADIREIANKHCIPDQELIVLLCINYA 86 (148)
Q Consensus 21 ~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~--~~~~~~ii~~i~d~~g~~ei~e~n~~eqlciN~~ 86 (148)
.|.+-+.+.....++.|++..+++.+|+++|. +..++.-+....+..++--+.+.-+|+-|-.|-.
T Consensus 399 vg~e~v~k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe~nSF 466 (1930)
T KOG0161|consen 399 VGREWVSKAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIFEFNSF 466 (1930)
T ss_pred ccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeeccccccCcCCH
Confidence 78888999999999999999999999999999 4555555544445455444678888888876543
No 41
>PTZ00014 myosin-A; Provisional
Probab=54.52 E-value=13 Score=33.99 Aligned_cols=28 Identities=11% Similarity=-0.035 Sum_probs=25.4
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1827 21 KGLADIVKLHMAQASQEAKKELQEQLEE 48 (148)
Q Consensus 21 ~gl~~i~~~l~~~~~~~~rd~L~k~L~~ 48 (148)
...|.+++.+|.+.|.|+++.+|+.|..
T Consensus 429 ~~rdalaK~lY~rLF~wiV~~IN~~l~~ 456 (821)
T PTZ00014 429 MLKDSLSKAVYEKLFLWIIRNLNATIEP 456 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4569999999999999999999999974
No 42
>PF14413 Thg1C: Thg1 C terminal domain; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.
Probab=49.92 E-value=33 Score=23.71 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CccchhhHHHHHHHhhhcCCCcch--hhhhhhhccchhHHHH
Q psy1827 24 ADIVKLHMAQASQEAKKELQEQLEEQISE-GASIKDIVADIREIANKHCIPDQE--LIVLLCINYANEHLQY 92 (148)
Q Consensus 24 ~~i~~~l~~~~~~~~rd~L~k~L~~~l~~-~~~~~~ii~~i~d~~g~~ei~e~n--~~eqlciN~~nE~l~~ 92 (148)
++|..|+.=+|+..-|..|+..-+-.+-. +.+..++-..++..-+ .+.| -|++++|||.+...-+
T Consensus 3 ~~v~dYl~WRQ~D~hrN~l~~~~fw~Lv~~g~s~~ea~~~L~G~~~----~~knElLf~~fGINyn~~P~~~ 70 (120)
T PF14413_consen 3 EEVRDYLSWRQADCHRNNLYNTCFWALVKSGFSPKEAHKRLKGTKS----SDKNELLFSRFGINYNNLPAWF 70 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHTT--H----HHHHHHHHHCC---GGGS-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCCH----HHHHHHHHHHhCCChhhCcHHH
Confidence 67899999999999999999888776654 3343433322211111 1112 2788999999855444
No 43
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=46.78 E-value=19 Score=32.46 Aligned_cols=29 Identities=3% Similarity=0.012 Sum_probs=25.6
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1827 21 KGLADIVKLHMAQASQEAKKELQEQLEEQ 49 (148)
Q Consensus 21 ~gl~~i~~~l~~~~~~~~rd~L~k~L~~~ 49 (148)
...|.+++.+|.+.|.|+++.+|+.|...
T Consensus 365 ~~rdalak~lY~~LF~wiV~~IN~~l~~~ 393 (717)
T cd01382 365 NARDALAKAVYSHLFDHVVSRVNQCFPFE 393 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35689999999999999999999998743
No 44
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=46.47 E-value=9.8 Score=34.51 Aligned_cols=76 Identities=7% Similarity=-0.028 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--CccchhhHHHHHHHhhhcCCCcchhhhhhhhcc--chhHHHHHHHHhhHHHHHhhh
Q psy1827 31 MAQASQEAKKELQEQLEEQISE--GASIKDIVADIREIANKHCIPDQELIVLLCINY--ANEHLQYYFNQHVFQYEQEEY 106 (148)
Q Consensus 31 ~~~~~~~~rd~L~k~L~~~l~~--~~~~~~ii~~i~d~~g~~ei~e~n~~eqlciN~--~nE~l~~~~~~~~f~~~~~~y 106 (148)
...++...||+|+|+||.++|+ ...++..+..-.+....--+.|.=|||.|-.|= ..-.+-|++++.+-+.=|..|
T Consensus 334 ~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f 413 (767)
T cd01386 334 LKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLF 413 (767)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHH
Confidence 4557888999999999999999 234444331110100111134555677664330 011455555544433333333
No 45
>PHA02503 putative transcription regulator; Provisional
Probab=46.39 E-value=59 Score=18.96 Aligned_cols=40 Identities=20% Similarity=0.056 Sum_probs=30.7
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1827 14 FRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEG 53 (148)
Q Consensus 14 ~~~~f~~~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~ 53 (148)
..+|+-+.-..+-++|++.+.....++-|+.+|-.++++.
T Consensus 6 ~i~h~g~~v~q~sve~yke~l~~~s~~fl~~slipql~ew 45 (57)
T PHA02503 6 TINHLGQVVYQESVEFYKEKLSVYSKDFLQNSLIPQLYEW 45 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3444444444667889999999999999999999998873
No 46
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=44.85 E-value=94 Score=20.86 Aligned_cols=81 Identities=15% Similarity=0.209 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHhhhcCCCcchhhhhhhhccchhHHHHHHHHhhHHHHHh
Q psy1827 25 DIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLLCINYANEHLQYYFNQHVFQYEQE 104 (148)
Q Consensus 25 ~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii~~i~d~~g~~ei~e~n~~eqlciN~~nE~l~~~~~~~~f~~~~~ 104 (148)
++..++..+++..+.+.+|+.|.+.... ....-++..+++... -+.-.+|+....++...-....+-.....
T Consensus 25 ~L~~~is~~ef~~iI~~IN~~l~~a~~~-~~~~~~~~~~l~~lt-------~~l~~~~~~~~~~~~~~~le~~l~~~N~~ 96 (118)
T PF10256_consen 25 ELSGYISPEEFEEIINTINQILKEAFEP-ISWRNIIENILGCLT-------LGLSSLCFKTHYKRKLRELEKYLEQLNEE 96 (118)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788999999999999999876433 112223333333321 01223333333334333333444444446
Q ss_pred hhhccCcce
Q psy1827 105 EYNKEGIRW 113 (148)
Q Consensus 105 ~y~~Egi~~ 113 (148)
.|..-||.|
T Consensus 97 ~~~~~gi~i 105 (118)
T PF10256_consen 97 LFKPRGIKI 105 (118)
T ss_pred hcccCCcEE
Confidence 778888876
No 47
>KOG0160|consensus
Probab=36.74 E-value=29 Score=31.95 Aligned_cols=40 Identities=8% Similarity=0.008 Sum_probs=31.6
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhH
Q psy1827 21 KGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60 (148)
Q Consensus 21 ~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii 60 (148)
..+|.+++.+|+.+|.|+++.+|..|..--......++++
T Consensus 334 ~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVL 373 (862)
T KOG0160|consen 334 KRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVL 373 (862)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeee
Confidence 4569999999999999999999999997333334555555
No 48
>KOG0163|consensus
Probab=31.55 E-value=22 Score=32.57 Aligned_cols=40 Identities=5% Similarity=-0.002 Sum_probs=30.4
Q ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhH
Q psy1827 19 EEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIV 60 (148)
Q Consensus 19 ~~~gl~~i~~~l~~~~~~~~rd~L~k~L~~~l~~~~~~~~ii 60 (148)
...|.|.+++..|+.+|.|++..+|+.+-=..+. .++|++
T Consensus 417 A~n~RDALaKaiYSkLFD~lV~~iNqsiPFe~St--~fiGVL 456 (1259)
T KOG0163|consen 417 ASNARDALAKAIYSKLFDWLVGRINQSIPFEKST--FFIGVL 456 (1259)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHhhccccccccc--ceeEEE
Confidence 4478899999999999999999999876533332 455544
No 49
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=30.08 E-value=91 Score=22.08 Aligned_cols=17 Identities=12% Similarity=-0.003 Sum_probs=11.5
Q ss_pred cCCCcchhhhhhhhccc
Q psy1827 70 HCIPDQELIVLLCINYA 86 (148)
Q Consensus 70 ~ei~e~n~~eqlciN~~ 86 (148)
.+.|++++|+-||.-..
T Consensus 45 eEaFDh~GFDA~chA~L 61 (144)
T PF12968_consen 45 EEAFDHDGFDAFCHAGL 61 (144)
T ss_dssp TS---HHHHHHHHHHHH
T ss_pred HhhcccccHHHHHHHHH
Confidence 78899999999996543
No 50
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=26.34 E-value=54 Score=18.14 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=13.5
Q ss_pred CCCCCCCCHHHHHHHHHhcCch
Q psy1827 3 FVPPNKRSDEYFRTVFEEKGLA 24 (148)
Q Consensus 3 ~~P~~kr~~~~~~~~f~~~gl~ 24 (148)
.||-.|||. ++.+++..+.|
T Consensus 11 vFP~~kr~~--Le~iL~~C~GD 30 (39)
T PF03474_consen 11 VFPHQKRSV--LELILQRCNGD 30 (39)
T ss_pred HCCCCChHH--HHHHHHHcCCc
Confidence 589888876 55666665544
No 51
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=25.95 E-value=71 Score=19.22 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH
Q psy1827 6 PNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQL 46 (148)
Q Consensus 6 ~~kr~~~~~~~~f~~~gl~~i~~~l~~~~~~~~rd~L~k~L 46 (148)
....-..|++..-+++| +.+-.-+.+.++....|+|.+..
T Consensus 16 mT~aQ~syL~tL~e~Ag-e~~~~~LtkaeAs~rId~L~~~~ 55 (57)
T PF11272_consen 16 MTGAQASYLKTLSEEAG-EPFPDDLTKAEASERIDELQAQT 55 (57)
T ss_pred CcHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHHHHHHh
Confidence 33344567777777788 88888899999999999887754
No 52
>PHA01351 putative minor structural protein
Probab=25.18 E-value=1.1e+02 Score=27.86 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCch----------hHHHHHHHHHHHHHHHHHHHHHH
Q psy1827 12 EYFRTVFEEKGLA----------DIVKLHMAQASQEAKKELQEQLE 47 (148)
Q Consensus 12 ~~~~~~f~~~gl~----------~i~~~l~~~~~~~~rd~L~k~L~ 47 (148)
-.+|+.|.+.||. .|.+|..++-|..++|++..++-
T Consensus 252 is~reifneiglgdipfadp~f~~i~~wv~arsf~e~kdh~ket~l 297 (1070)
T PHA01351 252 ISAREIFNEIGLGDLPFADPPFQLIGRWVAVRSFNEVKDHLKETIL 297 (1070)
T ss_pred hhHHHHHHhcCCCCCCCCCCcHHHHHHHHHHhhHHHHHHHHHhHHH
Confidence 3578999999985 47899999999999999998874
No 53
>PF00784 MyTH4: MyTH4 domain; InterPro: IPR000857 The microtubule-based kinesin motors and actin-based myosin motors generate movements required for intracellular trafficking, cell division, and muscle contraction. In general, these proteins consist of a motor domain that generates movement and a tail region that varies widely from class to class and is thought to mediate many of the regulatory or cargo binding functions specific to each class of motor []. The Myosin Tail Homology 4 (MyTH4) domain has been identified as a conserved domain in the tail domains of several different unconventional myosins [] and a plant kinesin-like protein [], but has more recently been found in several non-motor proteins []. Although the function is not yet fully understood, there is an evidence that the MyTH4 domain of Myosin-X (Myo10) binds to microtubules and thus could provide a link between an actin-based motor protein and the microtubule cytoskeleton []. The MyTH4 domain is found in one or two copies associated with other domains, such as myosin head, kinesin motor, FERM, PH, SH3 and IQ. The domain is predicted to be largely alpha-helical, interrupted by three or four turns. The MyTH4 domain contains four highly conserved regions designated MGD (consensus sequence L(K/R)(F/Y)MGDhP, LRDE (consensus LRDEhYCQhhKQHxxxN), RGW (consensus RGWxLh), and ELEA (RxxPPSxhELEA), where h indicates a hydrophobic residue and x is any residue [].; GO: 0005856 cytoskeleton; PDB: 3AU5_A 3AU4_A 3PZD_A 3PVL_A.
Probab=23.85 E-value=64 Score=21.59 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=23.5
Q ss_pred CCCCCCCCCHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH
Q psy1827 2 EFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQL 46 (148)
Q Consensus 2 ~~~P~~kr~~~~~~~~f~~~gl~~i~~~l~~~~~~~~rd~L~k~L 46 (148)
.+|||.+.=..+++.++....-+..........+.+..+.|.+..
T Consensus 52 ~~f~PS~~l~~yL~~fl~~~~~~~~~~~~~~~~a~~c~~~L~~~~ 96 (114)
T PF00784_consen 52 SCFPPSKDLLPYLRNFLNRHADSQESDPEVGKYAQYCLRRLKRTK 96 (114)
T ss_dssp CC----CCCHHHHHHHHHCCHCHHSTTSHHHCCHHHHHHHHCCHH
T ss_pred hhcCCcHHHHHHHHHHHHHcCcccCCCchHHHHHHHHHHHHHHHh
Confidence 589999999999999999864322212222333444444454443
No 54
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=23.66 E-value=1.2e+02 Score=16.35 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=18.7
Q ss_pred CHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH
Q psy1827 10 SDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQL 46 (148)
Q Consensus 10 ~~~~~~~~f~~~gl~~i~~~l~~~~~~~~rd~L~k~L 46 (148)
|++.|.++|. +.+--...+-.|-+..+.+.+
T Consensus 3 sd~dF~~vFg------m~~~eF~~lP~WKq~~lKK~~ 33 (36)
T PF02209_consen 3 SDEDFEKVFG------MSREEFYKLPKWKQNNLKKKA 33 (36)
T ss_dssp -HHHHHHHHS------S-HHHHHHS-HHHHHHHHHHT
T ss_pred CHHHHHHHHC------CCHHHHHHChHHHHHHHHHHh
Confidence 6788888885 334444556677777776653
No 55
>PHA00212 putative transcription regulator
Probab=23.46 E-value=1.7e+02 Score=17.36 Aligned_cols=38 Identities=18% Similarity=0.077 Sum_probs=26.0
Q ss_pred HHHHHhcCchhHHHHHHHHH-HHHHHHHHHHHHHHHHhc
Q psy1827 15 RTVFEEKGLADIVKLHMAQA-SQEAKKELQEQLEEQISE 52 (148)
Q Consensus 15 ~~~f~~~gl~~i~~~l~~~~-~~~~rd~L~k~L~~~l~~ 52 (148)
.+|+-+.-...-++|++++. ..-.++-++.+|-.++++
T Consensus 9 i~h~g~~i~q~sve~yk~~ll~~~s~~f~~~~l~pql~e 47 (63)
T PHA00212 9 VTHYGETIQQHSVEWYKKQLLKDFSVQFIKDSLLPQLFE 47 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444433355567777776 777888888888888887
No 56
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=23.14 E-value=37 Score=24.60 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=25.8
Q ss_pred cchhHHHHHHHHhhHHHHHhhhhccCcc
Q psy1827 85 YANEHLQYYFNQHVFQYEQEEYNKEGIR 112 (148)
Q Consensus 85 ~~nE~l~~~~~~~~f~~~~~~y~~Egi~ 112 (148)
=|++.||.+|-++-|..-.++|.+.||+
T Consensus 117 ~AQahLq~fYa~~GFv~~~e~yledGIp 144 (155)
T COG2153 117 GAQAHLQDFYASFGFVRVGEEYLEDGIP 144 (155)
T ss_pred ehHHHHHHHHHHhCcEEcCchhhcCCCC
Confidence 4788999999999999999999999995
No 57
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=22.72 E-value=1.7e+02 Score=17.10 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Q psy1827 11 DEYFRTVFEEKGLADIVKLHMAQASQEAKKELQE 44 (148)
Q Consensus 11 ~~~~~~~f~~~gl~~i~~~l~~~~~~~~rd~L~k 44 (148)
...+.++|+++-++.++.|+..-.-..+.+.-..
T Consensus 10 ~~~y~~~ft~~El~~i~~FY~Sp~Gqk~~~~~~~ 43 (64)
T PF09832_consen 10 APIYAEHFTEEELDAILAFYESPLGQKIVAKEPA 43 (64)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHCCHHhHHHHHHhHH
Confidence 4568889999999999999988766655554443
No 58
>PHA01632 hypothetical protein
Probab=21.07 E-value=1e+02 Score=18.57 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=12.0
Q ss_pred CCCCCHHHHHHHHHh
Q psy1827 6 PNKRSDEYFRTVFEE 20 (148)
Q Consensus 6 ~~kr~~~~~~~~f~~ 20 (148)
|+|-|++.+|+++.+
T Consensus 25 p~kpteeelrkvlpk 39 (64)
T PHA01632 25 PQKPTEEELRKVLPK 39 (64)
T ss_pred CCCCCHHHHHHHHHH
Confidence 688888888888765
Done!