RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1827
(148 letters)
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 113 bits (284), Expect = 5e-30
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 140
LCINYANE LQYYFNQH+F+ EQEEY EGI W +IE++DN C+QL KP GLL +LD
Sbjct: 398 LCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLD 457
Query: 141 DQAKI 145
+++
Sbjct: 458 EESNF 462
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 109 bits (276), Expect = 8e-29
Identities = 38/64 (59%), Positives = 49/64 (76%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 140
LCINYANE LQ +FNQHVF+ EQEEY +EGI W I+F DN C+ L+E KP G+L +LD
Sbjct: 390 LCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLD 449
Query: 141 DQAK 144
++ +
Sbjct: 450 EECR 453
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 102 bits (256), Expect = 3e-26
Identities = 38/65 (58%), Positives = 48/65 (73%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 140
LCINYANE LQ +FNQHVF+ EQEEY +EGI W I+F+DN + L+E KP GLL +LD
Sbjct: 383 LCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLD 442
Query: 141 DQAKI 145
++
Sbjct: 443 EECLF 447
>gnl|CDD|211398 cd11560, W2_eIF5C_like, C-terminal W2 domain of the eukaryotic
translation initiation factor 5C and similar proteins.
eIF5C appears to be essential for the initiation of
protein translation; its actual function, and
specifically that of the C-terminal W2 domain, are not
well understood. The Drosophila ortholog, kra
(krasavietz) or exba (extra bases), may be involved in
translational inhibition in neural development. The
structure of this C-terminal domain resembles that of a
set of concatenated HEAT repeats.
Length = 194
Score = 96.5 bits (241), Expect = 7e-26
Identities = 37/80 (46%), Positives = 59/80 (73%)
Query: 2 EFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVA 61
EF PPNKR++E+F F+E+GL ++V+ + QASQE KKELQ++L+E I+E +K+I+A
Sbjct: 1 EFFPPNKRTEEHFAEHFKEEGLDELVEFYRKQASQEIKKELQQELKEMIAEEEPVKEIIA 60
Query: 62 DIREIANKHCIPDQELIVLL 81
++E K +P+ E++ LL
Sbjct: 61 AVKEQMKKSSLPEHEVVGLL 80
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 96.7 bits (241), Expect = 4e-24
Identities = 35/61 (57%), Positives = 43/61 (70%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 140
CIN NE LQ +FNQHVF+ EQEEY KE I W +IEF DN L L+E KP G++ +LD
Sbjct: 388 FCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLD 447
Query: 141 D 141
+
Sbjct: 448 E 448
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 96.4 bits (240), Expect = 5e-24
Identities = 34/64 (53%), Positives = 48/64 (75%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 140
LCIN+ANE+LQ +F QH+F+ EQEEYN E I W+HIEF DN L L+ KP ++ ++D
Sbjct: 383 LCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLID 442
Query: 141 DQAK 144
+++K
Sbjct: 443 EESK 446
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 96.2 bits (240), Expect = 5e-24
Identities = 35/65 (53%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLLCVL 139
LCINYANE LQ +FN H+F+ EQEEY +EGI W I++ DN C+ L+E KP G+L +L
Sbjct: 384 LCINYANEKLQQFFNHHMFKLEQEEYVREGIAWTFIDYGLDNQACIDLIEKKPPGILSLL 443
Query: 140 DDQAK 144
D++ +
Sbjct: 444 DEECR 448
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 94.7 bits (236), Expect = 2e-23
Identities = 37/63 (58%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 82 CINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 141
CINYANE LQ FNQHVF+ EQEEY KEGI W I+F DN C+ L+E K G+L +LD+
Sbjct: 390 CINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESKL-GILSLLDE 448
Query: 142 QAK 144
+ +
Sbjct: 449 ECR 451
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 89.6 bits (222), Expect = 1e-21
Identities = 36/62 (58%), Positives = 45/62 (72%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 140
LCINYANE+LQY FN+ VFQ EQEEY +E + W I F+DN + L+ KP G+L +LD
Sbjct: 382 LCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILD 441
Query: 141 DQ 142
DQ
Sbjct: 442 DQ 443
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 87.6 bits (217), Expect = 6e-21
Identities = 36/63 (57%), Positives = 47/63 (74%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 140
CINYANE LQ +FN+H+F+ EQEEY ++GI W +EF DN CL L E KP GLL +LD
Sbjct: 386 FCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLD 445
Query: 141 DQA 143
+++
Sbjct: 446 EES 448
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 85.1 bits (211), Expect = 5e-20
Identities = 36/64 (56%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLLCVL 139
LCINY NE LQ +FNQH+F+ EQEEY KEGI W I++ DN C+ L+E K P G+L +L
Sbjct: 449 LCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLL 508
Query: 140 DDQA 143
D++
Sbjct: 509 DEEC 512
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 80.3 bits (198), Expect = 2e-18
Identities = 33/64 (51%), Positives = 46/64 (71%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 140
LCIN ANE +QYYFNQH+F +EQ+EY EG+ R +E+ DN L + KP GLL +LD
Sbjct: 394 LCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLD 453
Query: 141 DQAK 144
++++
Sbjct: 454 EESR 457
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 78.8 bits (195), Expect = 7e-18
Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLLCVL 139
LCINY NE LQ +FN H+F EQEEY +EGI W I+F D + L+E P G+L +L
Sbjct: 395 LCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLL 454
Query: 140 DDQ 142
D++
Sbjct: 455 DEE 457
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 77.2 bits (191), Expect = 2e-17
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLLCVL 139
CINY NE LQ F + + EQEEY +EGI+W IE+ +N + L+EGK P G+ +L
Sbjct: 387 FCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSIL 446
Query: 140 DD 141
DD
Sbjct: 447 DD 448
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 76.7 bits (189), Expect = 4e-17
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 82 CINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 141
CINY NE LQ +FN+ + + EQE Y +EG+ + + DN C+ L+E K NG+L +LD+
Sbjct: 419 CINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDE 478
Query: 142 QAKI 145
+ ++
Sbjct: 479 ENRL 482
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 51.2 bits (123), Expect = 3e-08
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 140
L IN NE LQ F VF+ E + Y EGI +E++ N + L+ GK +L +L+
Sbjct: 483 LFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILE 542
Query: 141 DQ 142
DQ
Sbjct: 543 DQ 544
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 34.8 bits (80), Expect = 0.012
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 140
LC NY E LQ F+ F E Y +EG+ +EF L E P + ++D
Sbjct: 400 LCHNYLQERLQLLFHHRTFVQPLERYAEEGVE---VEFD-------LAEPSPGTTVALVD 449
>gnl|CDD|178513 PLN02925, PLN02925, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase.
Length = 733
Score = 32.0 bits (73), Expect = 0.10
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 29/108 (26%)
Query: 20 EKGLADIVKLHMAQASQEAK--KELQEQLEEQISEGASIKDIVADIREIANKHCIPDQEL 77
+KG ADIV++ Q +EA E++ L + +G +I +VADI H P L
Sbjct: 121 DKG-ADIVRI-TVQGKKEADACFEIKNTL---VQKGYNIP-LVADI------HFAPSVAL 168
Query: 78 IVLLCI--------NYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIE 117
V C N+A+ Q+ +Y +++Y KE HIE
Sbjct: 169 RVAECFDKIRVNPGNFADRRAQF----EKLEYTEDDYQKE---LEHIE 209
>gnl|CDD|236356 PRK08944, motB, flagellar motor protein MotB; Reviewed.
Length = 302
Score = 30.7 bits (70), Expect = 0.20
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 24 ADIVKLHMAQASQEA---KKELQEQLEEQISEGA----SIKD-IVADIRE 65
+ VK A A ++ K+L +QLE++I +GA S+ I+ IRE
Sbjct: 130 SAEVKAEKAAAQEQIEDLVKKLAQQLEKEIEDGAIEIESLGQQIIIRIRE 179
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 29.5 bits (67), Expect = 0.45
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 32 AQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQE 76
A+ ++ K E +L Q A K IVA I+++ ++ I ++
Sbjct: 46 AEEAKAEKAERDRELNRQRQAEAEQKAIVAQIKQLIEQNRIDRKD 90
>gnl|CDD|148491 pfam06898, YqfD, Putative stage IV sporulation protein YqfD. This
family consists of several putative bacterial stage IV
sporulation (SpoIV) proteins. YqfD of Bacillus subtilis
is known to be essential for efficient sporulation
although its exact function is unknown.
Length = 383
Score = 29.6 bits (67), Expect = 0.49
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 2 EFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVA 61
K R + E VKL +A ++ KK +++LE++I + A IKD
Sbjct: 302 PLFLKWKLPISIVRETYYEVQDKV-VKLTKEEAVEKGKKLAKKKLEKEIDKDAKIKDEKV 360
Query: 62 DIREIANKHC 71
+ N
Sbjct: 361 LHERVENGKV 370
>gnl|CDD|238559 cd01139, TroA_f, Periplasmic binding protein TroA_f. These
proteins are predicted to function as initial receptors
in the ABC metal ion uptake in eubacteria and archaea.
They belong to the TroA superfamily of helical backbone
metal receptor proteins that share a distinct fold and
ligand binding mechanism. A typical TroA protein is
comprised of two globular subdomains connected by a
single helix and can bind their ligands in the cleft
between these domains.
Length = 342
Score = 28.8 bits (65), Expect = 0.99
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 20 EKGLA---DIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQE 76
EK L D+V L++ + + + E+LE+ A I + D R+ K+ P
Sbjct: 85 EKVLTLKPDLVILNIWAKTTAEESGILEKLEQ-----AGIPVVFVDFRQKPLKNTTPSMR 139
Query: 77 L 77
L
Sbjct: 140 L 140
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 28.8 bits (65), Expect = 1.3
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 2 EFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVA 61
FVPP + E L ++L K + Q E Q E +++ + A
Sbjct: 133 PFVPPEDPENLLHALQQEVLTLKQQLELQ-----AREKAQSQALAEAQQQELVALEGLAA 187
Query: 62 DIRE 65
++ E
Sbjct: 188 ELEE 191
>gnl|CDD|232867 TIGR00194, uvrC, excinuclease ABC, C subunit. This family consists
of the DNA repair enzyme UvrC, an ABC excinuclease
subunit which interacts with the UvrA/UvrB complex to
excise UV-damaged nucleotide segments [DNA metabolism,
DNA replication, recombination, and repair].
Length = 574
Score = 28.5 bits (64), Expect = 1.5
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 36 QEAKKELQEQLEEQIS-----EGASIKDIVADIREIANKHCIPDQELIVLLCINYANEH 89
QE KEL++++E+ E A I+D +A +RE+ K + +LI L I A +
Sbjct: 193 QEVIKELEQKMEKASENLEFEEAARIRDQIAAVRELNEKQHVSLTDLIDLDIIAVAFDG 251
>gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 28.3 bits (63), Expect = 1.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 23 LADIVKLHMAQASQEAKKELQEQLEEQISEGASIKD--IVADIREIANKHCIPDQ 75
L D KL A + + ++LEE++++ SIKD + D+ +H P Q
Sbjct: 501 LPDFAKLAEAYGHVGIQIDTPDELEEKLTQAFSIKDKLVFVDVNVDETEHVYPMQ 555
>gnl|CDD|115617 pfam06972, DUF1296, Protein of unknown function (DUF1296). This
family represents a conserved region approximately 60
residues long within a number of plant proteins of
unknown function. Structural modelling suggests this
domain may bind nucleic acids.
Length = 60
Score = 26.3 bits (58), Expect = 1.7
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 54 ASIKDIVADIREIANKHCIPDQELIVLL--CINYANEHLQYYFNQHVFQ 100
A ++ + I+E+ KH D ++ +L C NE +Q +Q F
Sbjct: 3 AELRKTIQSIKEVVGKH--SDADIYAMLKECNMDPNETVQKLLSQDTFH 49
>gnl|CDD|217679 pfam03701, UPF0181, Uncharacterized protein family (UPF0181).
This family contains small proteins of about 50 amino
acids of unknown function. The family includes YoaH.
Length = 52
Score = 26.1 bits (58), Expect = 1.7
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 23 LADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANK 69
L D+ L + QEA + +QE + + +S G +I + +IRE K
Sbjct: 2 LNDLPSLTHEE-QQEAVERIQELMAQGMSSGEAIAIVAQEIREKHQK 47
>gnl|CDD|222874 PHA02557, 22, prohead core protein; Provisional.
Length = 271
Score = 27.8 bits (62), Expect = 1.9
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 12 EYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISE 52
E F TVFE VKL + ++ A+K +E +EE + E
Sbjct: 37 EKFSTVFEAAVKQHAVKLAESHIAEIAEK-AEELVEEALEE 76
>gnl|CDD|191371 pfam05778, Apo-CIII, Apolipoprotein CIII (Apo-CIII). This family
consists of several mammalian apolipoprotein CIII
(Apo-CIII) sequences. Apolipoprotein C-III is a
79-residue glycoprotein. It is synthesised in the
intestine and liver as part of the very low density
lipoprotein (VLDL) and the high density lipoprotein
(HDL) particles. Owing to its positive correlation with
plasma triglyceride (Tg) levels, Apo-CIII is suggested
to play a role in Tg metabolism and is therefore of
interest regarding atherosclerosis. However, unlike
other apolipoproteins such as Apo-AI, Apo E or CII for
which many naturally occurring mutations are known, the
structure-function relationships of apo C-III remains a
subject of debate. One possibility is that apo C-III
inhibits lipoprotein lipase (LPL) activity, as shown by
in vitro experiments. Another suggestion, is that
elevated levels of Apo-CIII displace other
apolipoproteins at the lipoprotein surface, modifying
their clearance from plasma.
Length = 70
Score = 26.4 bits (58), Expect = 2.3
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 19 EEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGA 54
E+ L ++ +M QA++ A+ L E Q+++ A
Sbjct: 3 EDSSLLGKMQGYMKQATKTAQDALTSVQESQVAQQA 38
>gnl|CDD|220023 pfam08801, Nucleoporin_N, Nup133 N terminal like. Nup133 is a
nucleoporin that is crucial for nuclear pore complex
(NPC) biogenesis. The N terminal forms a seven-bladed
beta propeller structure. This family now contains other
sized nucleoporins, including Nup155, Nup8, Nuo132,
Nup15 and Nup170.
Length = 411
Score = 27.8 bits (62), Expect = 2.3
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 28 KLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANK----HCIPDQELIVLLCI 83
L + + ++ E + + E SI + + + K IP E +LL +
Sbjct: 219 DLSPSGEKLVREVDIYEIILRDLQE--SIPKSASTLSSKSLKILDISPIPSGESSLLLLV 276
Query: 84 NYANEHLQYYFNQ 96
+ ++ YF+
Sbjct: 277 AITSNGVRLYFSL 289
>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 1-like.
Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde (SSA) to succinate. SSADH
activity in Mycobacterium tuberculosis (Mtb) is encoded
by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb
GabD1 SSADH1 reportedly is an enzyme of the
gamma-aminobutyrate shunt, which forms a functional link
between two TCA half-cycles by converting
alpha-ketoglutarate to succinate.
Length = 429
Score = 27.8 bits (63), Expect = 2.4
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 34 ASQEAKKELQEQLEEQISEGASI 56
A ++ + EL EQ+EE ++ GA++
Sbjct: 281 ARKDLRDELHEQVEEAVAAGATL 303
>gnl|CDD|224020 COG1095, RPB7, DNA-directed RNA polymerase, subunit E'
[Transcription].
Length = 183
Score = 27.3 bits (61), Expect = 2.7
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 18 FEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDI-----VADIREIANKHCI 72
++ L D V++ + ++ ++ ++E+L+E+ EG D+ V D++EI +
Sbjct: 2 YKLVELEDTVRIPPSYFGEDLEEAVKEELKEKY-EGKLDGDVGLVVLVLDVKEIGEGIIV 60
Query: 73 P 73
P
Sbjct: 61 P 61
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 27.4 bits (62), Expect = 2.7
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 35 SQEAKKELQEQLEEQISEGAS--IKDIVADIREIANK 69
++EAK+ L E++EE+ A+ IK+I + +E A+K
Sbjct: 152 AEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADK 188
>gnl|CDD|236292 PRK08566, PRK08566, DNA-directed RNA polymerase subunit A';
Validated.
Length = 882
Score = 27.5 bits (62), Expect = 2.9
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 35 SQEAKKELQEQLEEQISEGASIKDIVADIREIANK-----HC 71
++E +E E+LE G+ D++ ++++ A K HC
Sbjct: 110 TEEEIEEYLEKLERLKEWGSLADDLIKEVKKEAAKRMVCPHC 151
>gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed.
Length = 552
Score = 27.1 bits (61), Expect = 4.5
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 23 LADIVKLHMAQASQEAKKELQEQLEEQISEGASIK-------DIVADIREIAN 68
+ L ++ S E +EL+ QLEE A ++ I+ +++I
Sbjct: 327 AEKLDGLSLSPQSLEILEELRAQLEELAERPARLEEGAVHPLRIIRALQDIVT 379
>gnl|CDD|224403 COG1486, CelF, Alpha-galactosidases/6-phospho-beta-glucosidases,
family 4 of glycosyl hydrolases [Carbohydrate transport
and metabolism].
Length = 442
Score = 26.8 bits (60), Expect = 5.3
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 86 ANEHLQYYFNQHVFQYEQEEYNKEGIR---WRHIEFSDNTLCLQ-LVEGKPNGLL 136
++ H YY+ + + + +E K G R E L + ++ KP L
Sbjct: 255 SSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELE 309
>gnl|CDD|223910 COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility
and secretion / Signal transduction mechanisms].
Length = 408
Score = 26.5 bits (58), Expect = 5.6
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 30 HMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIA 67
+ QE +EL E +++ I++I + I IA
Sbjct: 212 QAVEQMQEIAEELAEVVKKLSESSQEIEEITSVINSIA 249
>gnl|CDD|239936 cd04490, PolII_SU_OBF, PolII_SU_OBF: A subfamily of OB folds
corresponding to the OB fold found in Pyrococcus abyssi
DNA polymerase II (PolII) small subunit. PolII is a
family D DNA polymerase, having a 3-prime to 5-prime
exonuclease activity. P. abyssi PolII is heterodimeric.
The large subunit appears to be the polymerase, and the
small subunit may be the exonuclease. The small subunit
contains a calcineurin-like phosphatase superfamily
domain C-terminal to this OB-fold domain.
Length = 79
Score = 25.3 bits (56), Expect = 5.8
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 54 ASIKDIVADIREIANKHCI-----PDQELIVLL 81
SI +V D+R N H I + VLL
Sbjct: 2 VSIIGMVNDVRSTKNGHRIVELEDTTGRITVLL 34
>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and
multimerization region of GCN4 and related proteins.
Basic leucine zipper (bZIP) transcription factors act
in networks of homo- and hetero-dimers in the
regulation in a diverse set of cellular pathways.
Classical leucine zippers have alpha helices with
leucine residues 7 amino acids apart, which stabilize
dimerization with a parallel leucine zipper domain.
Dimerization creates a pair of basic regions that bind
DNA and undergo conformational change. GCN4 was
identified in Saccharomyces cerevisiae from mutations
in a deficiency in activation with the general amino
acid control pathway. GCN4 encodes a trans-activator of
amino acid biosynthetic genes containing 2 acidic
activation domains and a C-terminal bZIP domain,
comprised of a basic alpha-helical DNA-binding region
and a coiled-coil dimerization region.
Length = 54
Score = 25.0 bits (55), Expect = 5.9
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 30 HMAQASQEAKKELQEQLEEQISEGASIKDIVADIREI 66
E K+L++++EE SE + ++D V +++
Sbjct: 16 RSRARKMERMKQLEDKVEELTSENSDLEDEVDRLKKA 52
>gnl|CDD|215275 PLN02498, PLN02498, omega-3 fatty acid desaturase.
Length = 450
Score = 26.7 bits (59), Expect = 6.3
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 5 PPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKE----LQEQLEEQISEGASIKDIV 60
P + S R L L + +E +E + E E + GA +
Sbjct: 47 PFDLFSRGCSRE--RNWALNVSAPLTVPSGEEEEDEEGVNGVGEDEEGEFDPGAPPPFNL 104
Query: 61 ADIREIANKHC 71
ADIR KHC
Sbjct: 105 ADIRAAIPKHC 115
>gnl|CDD|115027 pfam06342, DUF1057, Alpha/beta hydrolase of unknown function
(DUF1057). This family consists of several
Caenorhabditis elegans specific proteins of unknown
function. Members of this family have an alpha/beta
hydrolase fold.
Length = 297
Score = 26.3 bits (58), Expect = 6.5
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 13/91 (14%)
Query: 28 KLHMAQASQEAKKELQEQLEEQISEGASIKDIVA---------DIREIANKHCIPDQELI 78
KL Q E+Q E+ ++ G+ +VA D + I +K + I
Sbjct: 7 KLVKFQTELGKTVEVQAVYEDSLTSGSPFGTVVAFHGSPGSHNDFKYIRSKF---EDLNI 63
Query: 79 VLLCINY-ANEHLQYYFNQHVFQYEQEEYNK 108
+ +NY E Y Q E+ Y+K
Sbjct: 64 RFIGVNYPGFEFTTGYPGQSHTNQERNSYSK 94
>gnl|CDD|217115 pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family. This is a
family of DNA-binding proteins. Members of this family
form homodimers which bind DNA via a tweezer-like
structure. The conformation of the DNA is changed when
bound to these proteins. In bacteria, these proteins
may play a role in DNA replication-recovery following
DNA damage.
Length = 92
Score = 25.2 bits (56), Expect = 6.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 31 MAQASQEAKKELQEQLEEQISEGAS 55
AQ QE ++ QE+L + EG S
Sbjct: 3 QAQQMQEKMEKAQEELANKEVEGTS 27
>gnl|CDD|218753 pfam05794, Tcp11, T-complex protein 11. This family consists of
several eukaryotic T-complex protein 11 (Tcp11) related
sequences. Tcp11 is only expressed in fertile adult
mammalian testes and is thought to be important in sperm
function and fertility. The family also contains the
yeast Sok1 protein which is known to suppress cyclic
AMP-dependent protein kinase mutants.
Length = 431
Score = 26.5 bits (59), Expect = 7.3
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 20 EKGLADIVKLH------MAQASQEAKKELQEQLEEQISEGASIKDIVADIREI 66
E G DIVKL + + A+ E ++L+E+ISE S+ DIV +R I
Sbjct: 93 EHGALDIVKLAKFIINILKKLCAPARDEEVKKLKEKISESQSVDDIVEGLRGI 145
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 26.5 bits (58), Expect = 7.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 19 EEKGLADIVKLHMAQASQEAKKELQEQLEEQISE 52
EK L D+ K +A +EA+K L + +IS+
Sbjct: 3 PEKDLEDLKKEAARRAKEEARKRLVAKHGAEISK 36
>gnl|CDD|224496 COG1580, FliL, Flagellar basal body-associated protein [Cell
motility and secretion].
Length = 159
Score = 25.7 bits (57), Expect = 7.8
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 29 LHMAQASQEAKKELQEQLEEQISEGASIKDI 59
L + ++ K E+++++ + EG +KD+
Sbjct: 121 LSTPEGKEKLKAEIKDRINTILKEGQVVKDV 151
>gnl|CDD|182731 PRK10788, PRK10788, periplasmic folding chaperone; Provisional.
Length = 623
Score = 26.1 bits (58), Expect = 8.6
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 33 QASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLLCINYANE 88
QA Q + LQ+QL +Q SE A+ + + +R+ I D+ L+ YA E
Sbjct: 57 QAFQSERNRLQQQLGDQFSELAANEGYMKQLRQQVLNRLI-DEALLD----QYARE 107
>gnl|CDD|225682 COG3140, COG3140, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 60
Score = 24.4 bits (53), Expect = 9.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 36 QEAKKELQEQLEEQISEGASIKDIVADIREI 66
Q+A + +QE + E +S G +I + ++RE
Sbjct: 14 QKAVERIQELMAEGMSSGEAIALVAQELREN 44
>gnl|CDD|179920 PRK05054, PRK05054, exoribonuclease II; Provisional.
Length = 644
Score = 26.0 bits (58), Expect = 9.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 49 QISEGASIKDIVADIREIANK 69
++ E + DIVA+ R IAN+
Sbjct: 368 ELGEKGEVLDIVAEPRRIANR 388
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.396
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,592,097
Number of extensions: 689146
Number of successful extensions: 1438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1425
Number of HSP's successfully gapped: 141
Length of query: 148
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 60
Effective length of database: 7,034,450
Effective search space: 422067000
Effective search space used: 422067000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.4 bits)