RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1827
(148 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 115 bits (291), Expect = 5e-31
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 140
CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+E + G+L +LD
Sbjct: 467 FCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILD 526
Query: 141 DQAK 144
++ +
Sbjct: 527 EENR 530
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 113 bits (285), Expect = 3e-30
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 140
L IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+ +LD
Sbjct: 401 LNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLD 460
Query: 141 DQ 142
+
Sbjct: 461 EA 462
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 109 bits (274), Expect = 9e-29
Identities = 34/62 (54%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 140
CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L +LD
Sbjct: 452 FCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLDLLD 510
Query: 141 DQ 142
++
Sbjct: 511 EE 512
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 106 bits (267), Expect = 6e-28
Identities = 34/62 (54%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 140
CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L +LD
Sbjct: 452 FCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLDLLD 510
Query: 141 DQ 142
++
Sbjct: 511 EE 512
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 103 bits (260), Expect = 6e-27
Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGLLCV 138
LCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G+L +
Sbjct: 469 LCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILAL 528
Query: 139 LDDQ 142
LD+Q
Sbjct: 529 LDEQ 532
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 103 bits (258), Expect = 1e-26
Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLLCVL 139
LCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G+L +L
Sbjct: 475 LCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGILSIL 533
Query: 140 DDQ 142
+++
Sbjct: 534 EEE 536
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 103 bits (258), Expect = 1e-26
Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLLCVL 139
LCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP G++ +L
Sbjct: 476 LCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGIMSIL 534
Query: 140 DDQ 142
+++
Sbjct: 535 EEE 537
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 102 bits (255), Expect = 3e-26
Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPNGLLC 137
LCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E P GLL
Sbjct: 448 LCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLA 507
Query: 138 VLDDQ 142
+LD++
Sbjct: 508 LLDEE 512
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 101 bits (253), Expect = 5e-26
Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGLLCV 138
LCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G+L +
Sbjct: 469 LCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILAL 528
Query: 139 LDDQ 142
LD+Q
Sbjct: 529 LDEQ 532
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 96.1 bits (239), Expect = 4e-24
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 81 LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK--PNGLLC 137
LCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P G+L
Sbjct: 479 LCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLA 538
Query: 138 VLDDQAK 144
+LD++
Sbjct: 539 LLDEECW 545
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.011
Identities = 28/185 (15%), Positives = 52/185 (28%), Gaps = 52/185 (28%)
Query: 2 EFVPPNKRSDEYFRTVFEEKGLAD---IVKLHMAQASQEAKKELQEQLEEQISE------ 52
E P+ + Y ++ D K ++++ + +L++ L E
Sbjct: 101 EQRQPSMMTRMYIEQR--DRLYNDNQVFAKYNVSR--LQPYLKLRQALLELRPAKNVLID 156
Query: 53 -----GASI--KDIVADIREIAN----------KHCIPDQELIVLLCINYANEHLQYYFN 95
G + D+ + K+C + ++ E LQ
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---------EMLQKLLY 207
Query: 96 QHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD------------QA 143
Q + + I+ R L + N LL VL +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKAWNAFNLSC 266
Query: 144 KILLL 148
KILL
Sbjct: 267 KILLT 271
Score = 27.5 bits (60), Expect = 2.1
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 25/116 (21%)
Query: 30 HMAQASQEAK---KELQEQLEEQISEGASIKDIVADIREIANK----HCI--PDQE---- 76
HM + E + K++ E+ + KD+ + I +K H I D
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 77 -LIVLLCINYANEHLQYYFNQHVFQ--YE------QEEYN-KEGIRWRHIEFSDNT 122
L L E + F + V + Y+ + E + +IE D
Sbjct: 66 RLFWTLLSK--QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.053
Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 37/106 (34%)
Query: 33 QASQE------------AKKELQEQLEEQISE--GASIKDIVAD---------------- 62
Q SQE A +++ + + + G SI DIV +
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 63 IREIANKHC---IPDQELIVLLCINYANEHLQYYFNQHVFQYEQEE 105
IRE + I D +L NEH Y F+ E+
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY----TFRSEKGL 1725
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat
domain, structural genomics, PSI, protein structure
initiative; 1.90A {Homo sapiens}
Length = 168
Score = 30.4 bits (68), Expect = 0.12
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 40 KELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLL 81
+L+++L +QI S + I I++ + D+ + +L
Sbjct: 2 LKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNIL 43
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 28.1 bits (62), Expect = 0.95
Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 11/65 (16%)
Query: 58 DIVADIREIANKHCIPDQELIVLLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIE 117
++ D E+ + + I + C + + Y + GI H
Sbjct: 59 NVQKDTEELKSCGI----QDIFVFCTRGELSKYRVP-------NLLDLYQQCGIITHHHP 107
Query: 118 FSDNT 122
+D
Sbjct: 108 IADGG 112
>1j8b_A YBAB; hypothetical protein, structural genomics, structure
function project, S2F, unknown function; HET: MSE;
1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB:
1pug_A
Length = 112
Score = 27.2 bits (61), Expect = 1.2
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 15 RTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGAS 55
+F + GL ++K AQ QE +++QE++ + G S
Sbjct: 2 SHMFGKGGLGGLMK--QAQQMQEKMQKMQEEIAQLEVTGES 40
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 27.5 bits (62), Expect = 1.8
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 34 ASQEAKKELQEQLEEQISEGASI 56
S++AK++L+ Q++E I GA +
Sbjct: 308 NSEKAKEKLEAQVKEAIDAGAKV 330
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural
genomics, P protein structure initiative; HET: MSE;
1.78A {Helicobacter pylori}
Length = 99
Score = 26.1 bits (58), Expect = 2.3
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 31 MAQASQEAKKELQEQLEEQISEGAS 55
+ ++ +L+E+ ++ I S
Sbjct: 11 LLDGMKKEFSQLEEKNKDTIHTSKS 35
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 2.3
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 31 MAQASQ-----EAKKELQEQLEEQISE-GASIKDIVADIREIANKH 70
+AQA + E+ ++ +E+ +++ E A+ K + + RE A K
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKD 119
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein
structure initiative, southeast COLL for structural
genomics, secsg; HET: MSE; 1.80A {Clostridium
thermocellum}
Length = 143
Score = 26.3 bits (58), Expect = 2.7
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 22 GLADIVKLHMAQASQEAKKELQEQLEEQISEGAS 55
+ ++VK AQ Q + +QE+L+E+ E ++
Sbjct: 42 NINNLVK--QAQKMQRDMERVQEELKEKTVEASA 73
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 27.1 bits (61), Expect = 2.8
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 34 ASQEAKKELQEQLEEQISEGASI 56
A + + EL +Q++ ++EGA +
Sbjct: 311 ARFDLRDELHQQVQASVAEGARL 333
>2g7z_A Conserved hypothetical protein SPY1493; long-fatty acid binding
protein, lipid binding protein, PSI, structural
genomics; HET: MSE HXA; 2.05A {Streptococcus pyogenes}
Length = 282
Score = 26.8 bits (60), Expect = 3.1
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 29/88 (32%)
Query: 14 FRTVFE---EKGLADIVKLHMA-------QASQEAKKELQEQLE---------------- 47
F +E +KG+ DIV +H++ +AS++ + + +
Sbjct: 73 FAETYENLVKKGVTDIVAIHLSPALSGTIEASRQGAEIAEAPVTVLDSGFTDQAMKFQVV 132
Query: 48 ---EQISEGASIKDIVADIREIANKHCI 72
+ GAS+ +I+A ++ I +K +
Sbjct: 133 EAAKMAKAGASLNEILAAVQAIKSKTEL 160
>1mgp_A Hypothetical protein TM841; two domain structure with mixed
alpha/beta structures in BOTH domains, structural
genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP:
c.119.1.1 PDB: 1vpv_A*
Length = 313
Score = 26.5 bits (59), Expect = 4.0
Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 29/88 (32%)
Query: 14 FRTVFE---EKGLADIVKLHMA-------QASQEAKKELQEQLE---------------- 47
F+ + E+ ++ L ++ ++ A KE+ +
Sbjct: 96 FKKRYLKYKEEDYDVVLVLTLSSKLSGTYNSAVLASKEVDIPVYVVDTLLASGAIPLPAR 155
Query: 48 ---EQISEGASIKDIVADIREIANKHCI 72
E + GA+I++++ + E
Sbjct: 156 VAREMLENGATIEEVLKKLDERMKNKDF 183
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A
{Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A
1a7w_A 1b6w_A 1bfm_A
Length = 68
Score = 25.0 bits (55), Expect = 4.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 35 SQEAKKELQEQLEEQISEGAS 55
S +A+ L + LEE E AS
Sbjct: 21 SDDARIALAKVLEEMGEEIAS 41
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A
{Pyrococcus horikoshii} SCOP: a.22.1.2
Length = 70
Score = 25.0 bits (55), Expect = 4.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 35 SQEAKKELQEQLEEQISEGAS 55
S++A K L E LEE E A
Sbjct: 25 SEQAAKVLAEYLEEYAIEIAK 45
>2dt8_A DEGV family protein; fatty acid binding, structural genomics,
NPPSFA, natio project on protein structural and
functional analyses; HET: PLM; 1.48A {Thermus
thermophilus}
Length = 280
Score = 26.0 bits (58), Expect = 4.5
Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 28/87 (32%)
Query: 12 EYFRTVFEEKGLADIVKLHMA-------QASQEAKKELQEQLE----------------- 47
+R EE ++ LH++ Q+++ A +E ++
Sbjct: 71 RVYREALEEA--DHVLSLHISGKLSGTVQSAELAAQEFPGRVTVVDTQAASLGVGMMVLR 128
Query: 48 --EQISEGASIKDIVADIREIANKHCI 72
E + EG S++ ++A++ + H +
Sbjct: 129 AKELLEEGQSLEAVLAELERLRRDHFV 155
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 25.6 bits (56), Expect = 5.3
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 9/59 (15%)
Query: 62 DIREIANKHCIPDQELIVLLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 120
+I E + + +++L E + + Y K G++ HI D
Sbjct: 20 EILEWRKEGV----KRVLVLP-----EDWEIEESWGDKDYYLSILKKNGLQPLHIPIPD 69
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid
binding, protei structure initiative; HET: ELA; 2.65A
{Streptococcus agalactiae}
Length = 285
Score = 25.6 bits (57), Expect = 7.9
Identities = 12/89 (13%), Positives = 20/89 (22%), Gaps = 30/89 (33%)
Query: 14 FRTVFE---EKGLADIVKLHMA-------QASQEAKKELQE------------------- 44
+ ++G ++ L +A Q Q +E
Sbjct: 72 LDDLLCQLEKEGYTHVLGLFIAAGISGFWQNIQFLIEEHPNLTIAFPDTKITSAPQGNLV 131
Query: 45 -QLEEQISEGASIKDIVADIREIANKHCI 72
EG IV I+ K
Sbjct: 132 RNALMCSREGMDFDVIVNKIQSQIEKIEG 160
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding
protein, lipid binding protein; HET: PLM; 2.04A
{Streptococcus mutans}
Length = 320
Score = 25.3 bits (56), Expect = 8.7
Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 33/92 (35%)
Query: 12 EYFRTVFEEKGLADIVKLHMA-------QASQEAKKELQEQLE----------------- 47
YFR E +++ + + Q++ A+ + E+
Sbjct: 106 SYFRQSAENG--QEVLYIAFSSVLSGTYQSAVMARDIVLEEYPQASIEIVDTLAATGGEG 163
Query: 48 -------EQISEGASIKDIVADIREIANKHCI 72
+ EG S+K+ I ++ +
Sbjct: 164 YLAMLAAQAREEGKSLKETKELILDVGPRLRT 195
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains
containing mixed alpha/beta structures, PSI; HET: PLM;
2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Length = 289
Score = 25.2 bits (56), Expect = 9.4
Identities = 8/92 (8%), Positives = 18/92 (19%), Gaps = 33/92 (35%)
Query: 12 EYFRTVFEEKGLADIVKLHMA-------QASQEAKKELQEQLE----------------- 47
E F +E + + + Q + + EL ++
Sbjct: 72 ELFLPYAKEN--RPCLYIAFSSKLSGTYQTAMAVRSELLDEYPEFRLTIIDSKCASLGQG 129
Query: 48 -------EQISEGASIKDIVADIREIANKHCI 72
E + + I
Sbjct: 130 LAVMKAVELAKQNTPYNLLCETIESYCRHMEH 161
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.396
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,276,360
Number of extensions: 129214
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 65
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)