RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1827
         (148 letters)



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 68.2 bits (166), Expect = 7e-15
 Identities = 28/62 (45%), Positives = 41/62 (66%)

Query: 81  LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 140
           L IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP GL+ +LD
Sbjct: 393 LNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLD 452

Query: 141 DQ 142
           + 
Sbjct: 453 EA 454


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 65.9 bits (160), Expect = 5e-14
 Identities = 28/62 (45%), Positives = 39/62 (62%)

Query: 81  LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 140
           LCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP G+  +L+
Sbjct: 429 LCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFSILE 488

Query: 141 DQ 142
           ++
Sbjct: 489 EE 490


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 62.8 bits (152), Expect = 5e-13
 Identities = 30/62 (48%), Positives = 40/62 (64%)

Query: 81  LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 140
           LCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP G+L +L+
Sbjct: 427 LCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILSILE 486

Query: 141 DQ 142
           ++
Sbjct: 487 EE 488


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 61.7 bits (149), Expect = 1e-12
 Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 81  LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPNGLLC 137
           LCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E    P G+L 
Sbjct: 401 LCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLA 460

Query: 138 VLDDQ 142
           +LD++
Sbjct: 461 LLDEE 465


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 61.3 bits (148), Expect = 2e-12
 Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 1/62 (1%)

Query: 81  LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 140
            CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K  G+L +LD
Sbjct: 390 FCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLD 448

Query: 141 DQ 142
           ++
Sbjct: 449 EE 450


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 57.8 bits (139), Expect = 3e-11
 Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 2/64 (3%)

Query: 81  LCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCV 138
           LCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G +P G+L +
Sbjct: 422 LCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILAL 481

Query: 139 LDDQ 142
           LD+Q
Sbjct: 482 LDEQ 485


>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor
          eIF4G {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 38 AKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLL 81
            +EL  QLE+ + EG+S + +   I    ++  I    L+  L
Sbjct: 3  PSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLVRAL 46


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 25.2 bits (55), Expect = 3.5
 Identities = 8/39 (20%), Positives = 10/39 (25%)

Query: 83  INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 121
           I Y       +  Q  F+            W H E  D 
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415


>d1tlja_ d.282.1.1 (A:) Hypothetical protein SSo0622 {Sulfolobus
          solfataricus [TaxId: 2287]}
          Length = 189

 Score = 24.8 bits (54), Expect = 4.8
 Identities = 4/35 (11%), Positives = 12/35 (34%)

Query: 36 QEAKKELQEQLEEQISEGASIKDIVADIREIANKH 70
          +E +++   ++      G    DI+  +       
Sbjct: 4  EELREKALNKIYHDKEIGYLDPDILGFLLAFYRNR 38


>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus
          influenzae [TaxId: 727]}
          Length = 92

 Score = 23.4 bits (51), Expect = 6.7
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 23 LADIVKLHMAQASQEAKKELQEQLEEQISEGAS 55
          L  ++K   AQ  QE  +++QE++ +    G S
Sbjct: 1  LGGLMK--QAQQMQEKMQKMQEEIAQLEVTGES 31


>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni
           [TaxId: 197]}
          Length = 165

 Score = 23.8 bits (51), Expect = 8.2
 Identities = 11/44 (25%), Positives = 17/44 (38%)

Query: 25  DIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIAN 68
            +V+  +          LQ  + EQ  E A  + IV  I+ I  
Sbjct: 103 TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGE 146


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 554,907
Number of extensions: 24684
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 28
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.1 bits)