Query psy1832
Match_columns 111
No_of_seqs 57 out of 59
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 17:31:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gt4_A Tyrosine-protein kinase 50.4 3.3 0.00011 31.8 0.0 43 16-58 39-92 (308)
2 2vi6_A Homeobox protein nanog; 38.0 59 0.002 18.8 5.6 56 22-86 1-57 (62)
3 1yz8_P Pituitary homeobox 2; D 37.1 31 0.001 20.5 3.0 40 22-70 1-41 (68)
4 4g31_A Eukaryotic translation 34.6 6.8 0.00023 29.7 -0.5 42 17-58 19-66 (299)
5 4aoj_A High affinity nerve gro 33.9 10 0.00034 29.3 0.4 42 16-58 54-106 (329)
6 4asz_A BDNF/NT-3 growth factor 33.0 14 0.00047 28.1 1.0 42 16-58 26-78 (299)
7 1luf_A Muscle-specific tyrosin 32.4 14 0.00047 26.9 0.9 44 16-59 60-114 (343)
8 1iyc_A Scarabaecin; antifungal 31.8 12 0.00039 21.1 0.3 13 11-23 15-27 (36)
9 2h1k_A IPF-1, pancreatic and d 30.5 82 0.0028 18.2 5.2 40 22-70 1-41 (63)
10 3d1n_I POU domain, class 6, tr 29.0 1.2E+02 0.0042 20.7 5.4 40 23-71 92-132 (151)
11 2dmu_A Homeobox protein goosec 28.8 93 0.0032 18.3 5.4 39 23-70 6-45 (70)
12 3poz_A Epidermal growth factor 28.7 24 0.00083 25.9 1.7 43 16-58 28-80 (327)
13 2da2_A Alpha-fetoprotein enhan 28.5 94 0.0032 18.3 4.9 39 23-70 6-45 (70)
14 3omv_A RAF proto-oncogene seri 26.9 17 0.00058 27.9 0.6 43 16-58 49-95 (307)
15 3hyh_A Carbon catabolite-derep 24.6 52 0.0018 24.8 2.9 43 16-58 26-76 (275)
16 2l92_A Histone family protein 22.3 36 0.0012 20.6 1.3 15 16-30 12-26 (50)
17 3cc6_A Protein tyrosine kinase 21.7 48 0.0016 23.4 2.1 43 16-58 25-76 (281)
18 1mp8_A Focal adhesion kinase 1 21.0 34 0.0012 24.2 1.2 43 16-58 28-79 (281)
No 1
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=50.39 E-value=3.3 Score=31.76 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=30.2
Q ss_pred CCceeeecccc-----------ccccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1832 16 KGNIFRGKYRI-----------VEPVTHLRKAIKIEEFKIEERNMFLLRHPYLT 58 (111)
Q Consensus 16 ~G~~w~GK~R~-----------~~~vs~~~k~~~~~rle~E~enm~~Ls~PYLT 58 (111)
+|.||.|+++. ++.++........++|..|.+.+.=|.||.+-
T Consensus 39 fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV 92 (308)
T 4gt4_A 39 FGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVV 92 (308)
T ss_dssp SCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBC
T ss_pred CcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCC
Confidence 58999987642 33444444445567899999999999999875
No 2
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=37.97 E-value=59 Score=18.80 Aligned_cols=56 Identities=9% Similarity=0.022 Sum_probs=27.9
Q ss_pred eccccccc-cCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhhhHHHHHHHHHHHHHHHHHHcC
Q psy1832 22 GKYRIVEP-VTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLERNENFRRERRALKLQK 86 (111)
Q Consensus 22 GK~R~~~~-vs~~~k~~~~~rle~E~enm~~Ls~PYLT~EqE~gh~~~l~~r~~~~~~~~~~~~~K 86 (111)
|+.|+++. +|......|... +...||++.++=..-++.++--+.-..-|...+++|
T Consensus 1 g~~rr~Rt~ft~~q~~~Le~~---------F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 57 (62)
T 2vi6_A 1 GTKQKMRTVFSQAQLCALKDR---------FQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMK 57 (62)
T ss_dssp -------CCCCHHHHHHHHHH---------HHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHH---------HHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcc
Confidence 44455553 455544433332 356899999887777776654444444454444433
No 3
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=37.09 E-value=31 Score=20.54 Aligned_cols=40 Identities=13% Similarity=-0.069 Sum_probs=23.8
Q ss_pred eccccccc-cCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhhhHHHH
Q psy1832 22 GKYRIVEP-VTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLE 70 (111)
Q Consensus 22 GK~R~~~~-vs~~~k~~~~~rle~E~enm~~Ls~PYLT~EqE~gh~~~l~ 70 (111)
|+.|+.+. +|......|.. .+...||.+.++=..-+..++
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~---------~F~~~~yp~~~~r~~La~~l~ 41 (68)
T 1yz8_P 1 GSQRRQRTHFTSQQLQQLEA---------TFQRNRYPDMSTREEIAVWTN 41 (68)
T ss_dssp CCSSCSCCCCCHHHHHHHHH---------HHTTCSSCCTTTTTHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHH---------HHHccCCCCHHHHHHHHHHHC
Confidence 45555553 45555443333 345699999887666666553
No 4
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=34.57 E-value=6.8 Score=29.73 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=27.6
Q ss_pred Cceeeeccccc------cccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1832 17 GNIFRGKYRIV------EPVTHLRKAIKIEEFKIEERNMFLLRHPYLT 58 (111)
Q Consensus 17 G~~w~GK~R~~------~~vs~~~k~~~~~rle~E~enm~~Ls~PYLT 58 (111)
|.||.++++.. +.|.........+++.+|.+.|.-|.||++-
T Consensus 19 g~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV 66 (299)
T 4g31_A 19 GVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIV 66 (299)
T ss_dssp -EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBC
T ss_pred eEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCC
Confidence 77888765532 2232222334467899999999999999874
No 5
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=33.89 E-value=10 Score=29.31 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=28.9
Q ss_pred CCceeeecccc-----------ccccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1832 16 KGNIFRGKYRI-----------VEPVTHLRKAIKIEEFKIEERNMFLLRHPYLT 58 (111)
Q Consensus 16 ~G~~w~GK~R~-----------~~~vs~~~k~~~~~rle~E~enm~~Ls~PYLT 58 (111)
+|.||.|+++. ++.+.. ......++|.+|.+.|.-|.||.+-
T Consensus 54 fG~Vy~a~~~~~~~~~~~~~vAvK~l~~-~~~~~~~~f~~E~~il~~l~HpnIV 106 (329)
T 4aoj_A 54 FGKVFLAECHNLLPEQDKMLVAVKALKE-ASESARQDFQREAELLTMLQHQHIV 106 (329)
T ss_dssp SEEEEEEEESSSCC---CEEEEEEEESC-CSHHHHHHHHHHHHHHTTCCCTTBC
T ss_pred CcEEEEEEECCcccCCCCeEEEEEEECc-CCHHHHHHHHHHHHHHHhCCCCCCC
Confidence 48899887653 222321 1223467899999999999999875
No 6
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=33.00 E-value=14 Score=28.15 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=28.9
Q ss_pred CCceeeecccc-----------ccccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1832 16 KGNIFRGKYRI-----------VEPVTHLRKAIKIEEFKIEERNMFLLRHPYLT 58 (111)
Q Consensus 16 ~G~~w~GK~R~-----------~~~vs~~~k~~~~~rle~E~enm~~Ls~PYLT 58 (111)
.|.||.|+++. ++.+... ..+..++|.+|.+.|.=|.||.+-
T Consensus 26 fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~-~~~~~~~f~~E~~il~~l~HpnIV 78 (299)
T 4asz_A 26 FGKVFLAECYNLCPEQDKILVAVKTLKDA-SDNARKDFHREAELLTNLQHEHIV 78 (299)
T ss_dssp CCCEEEEEECSCC----CEEEEEEEECSC-CHHHHHHHHHHHHHHTTCCCTTBC
T ss_pred CcEEEEEEECCcccCCCCEEEEEEEeCCC-ChHHHHHHHHHHHHHHhCCCCCCc
Confidence 48999997652 1222211 123467899999999999999875
No 7
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=32.39 E-value=14 Score=26.94 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=29.8
Q ss_pred CCceeeecccc-----------ccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCH
Q psy1832 16 KGNIFRGKYRI-----------VEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTE 59 (111)
Q Consensus 16 ~G~~w~GK~R~-----------~~~vs~~~k~~~~~rle~E~enm~~Ls~PYLT~ 59 (111)
.|.+|.|++.. ++.+.........+++..|.+.+.-|.||++-.
T Consensus 60 ~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~ 114 (343)
T 1luf_A 60 FGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVK 114 (343)
T ss_dssp SCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCC
T ss_pred CeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 48888887652 122222223345678999999999999998863
No 8
>1iyc_A Scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, antifungal protein; NMR {Synthetic} SCOP: g.31.1.2
Probab=31.78 E-value=12 Score=21.10 Aligned_cols=13 Identities=31% Similarity=0.718 Sum_probs=10.6
Q ss_pred cCCCCCCceeeec
Q psy1832 11 ARKYPKGNIFRGK 23 (111)
Q Consensus 11 ~~~ip~G~~w~GK 23 (111)
..+-|.|++|-|-
T Consensus 15 rsncpkgkvwngf 27 (36)
T 1iyc_A 15 RSNCPKGKVWNGF 27 (36)
T ss_dssp TSCCCSSCEEETT
T ss_pred ccCCCCcceecCc
Confidence 4588899999983
No 9
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=30.52 E-value=82 Score=18.24 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=22.3
Q ss_pred ecccccc-ccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhhhHHHH
Q psy1832 22 GKYRIVE-PVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLE 70 (111)
Q Consensus 22 GK~R~~~-~vs~~~k~~~~~rle~E~enm~~Ls~PYLT~EqE~gh~~~l~ 70 (111)
|+.|+.+ .+|......|...| ...||++.++=..-|..++
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~~F---------~~~~yp~~~~r~~LA~~l~ 41 (63)
T 2h1k_A 1 GSNKRTRTAYTRAQLLELEKEF---------LFNKYISRPRRVELAVMLN 41 (63)
T ss_dssp ----CCCCCCCHHHHHHHHHHH---------HHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCHHHHHHHHHHH---------hcCCCcCHHHHHHHHHHhC
Confidence 3344444 34665555444333 4689999988776666554
No 10
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=29.00 E-value=1.2e+02 Score=20.71 Aligned_cols=40 Identities=23% Similarity=0.135 Sum_probs=25.9
Q ss_pred ccccccc-cCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhhhHHHHH
Q psy1832 23 KYRIVEP-VTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLER 71 (111)
Q Consensus 23 K~R~~~~-vs~~~k~~~~~rle~E~enm~~Ls~PYLT~EqE~gh~~~l~~ 71 (111)
+-|+.+. +|......|...|+ .+||.+.++=..-+..++-
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~---------~~~yp~~~~r~~LA~~l~L 132 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFE---------KNPLPTGQEITEMAKELNY 132 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHH---------HCSSCCHHHHHHHHHHHTS
T ss_pred CCCCCCcccCHHHHHHHHHHHH---------hcCCCCHHHHHHHHHHHCC
Confidence 4454443 67776665555554 3899999887766666643
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.83 E-value=93 Score=18.33 Aligned_cols=39 Identities=10% Similarity=-0.063 Sum_probs=24.2
Q ss_pred cccccc-ccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhhhHHHH
Q psy1832 23 KYRIVE-PVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLE 70 (111)
Q Consensus 23 K~R~~~-~vs~~~k~~~~~rle~E~enm~~Ls~PYLT~EqE~gh~~~l~ 70 (111)
+.|+.+ .+|......|...| ...||.+.++=..-+..++
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F---------~~~~yp~~~~r~~LA~~l~ 45 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLF---------QETKYPDVGTREQLARKVH 45 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHH---------HHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHH---------HccCCCCHHHHHHHHHHHC
Confidence 344444 35666555444443 3489999998777666664
No 12
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=28.73 E-value=24 Score=25.90 Aligned_cols=43 Identities=14% Similarity=0.208 Sum_probs=26.5
Q ss_pred CCceeeecccc----------ccccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1832 16 KGNIFRGKYRI----------VEPVTHLRKAIKIEEFKIEERNMFLLRHPYLT 58 (111)
Q Consensus 16 ~G~~w~GK~R~----------~~~vs~~~k~~~~~rle~E~enm~~Ls~PYLT 58 (111)
.|.+|.|++.. ++.+.........+++..|.+.+.-|.||++-
T Consensus 28 ~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 80 (327)
T 3poz_A 28 FGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVC 80 (327)
T ss_dssp TEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBC
T ss_pred CeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEe
Confidence 47888886532 22333333344567899999999999999764
No 13
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=28.47 E-value=94 Score=18.26 Aligned_cols=39 Identities=15% Similarity=0.047 Sum_probs=23.9
Q ss_pred cccccc-ccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhhhHHHH
Q psy1832 23 KYRIVE-PVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLE 70 (111)
Q Consensus 23 K~R~~~-~vs~~~k~~~~~rle~E~enm~~Ls~PYLT~EqE~gh~~~l~ 70 (111)
+.|+.+ .+|......|...| ...||.+.++=..-+..++
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F---------~~~~yp~~~~r~~LA~~l~ 45 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFF---------DANAYPKDDEFEQLSNLLN 45 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHH---------HHCSSCCHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHH---------HcCCCcCHHHHHHHHHHhC
Confidence 445544 35666555444333 4589999988776666554
No 14
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=26.86 E-value=17 Score=27.94 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=29.5
Q ss_pred CCceeeecccccccc---C-HHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1832 16 KGNIFRGKYRIVEPV---T-HLRKAIKIEEFKIEERNMFLLRHPYLT 58 (111)
Q Consensus 16 ~G~~w~GK~R~~~~v---s-~~~k~~~~~rle~E~enm~~Ls~PYLT 58 (111)
.|.||.|+++....| . ........++|..|.+.+.=|.||.+-
T Consensus 49 fG~Vy~~~~~~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV 95 (307)
T 3omv_A 49 FGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNIL 95 (307)
T ss_dssp SSEEEEEESSSEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBC
T ss_pred CcEEEEEEECCcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEe
Confidence 589999987653322 1 111122367899999999999999765
No 15
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=24.62 E-value=52 Score=24.77 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=26.9
Q ss_pred CCceeeeccccc------ccc--CHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1832 16 KGNIFRGKYRIV------EPV--THLRKAIKIEEFKIEERNMFLLRHPYLT 58 (111)
Q Consensus 16 ~G~~w~GK~R~~------~~v--s~~~k~~~~~rle~E~enm~~Ls~PYLT 58 (111)
.|.||.++++.. +.| +.........++.+|.+.+.-|.||++-
T Consensus 26 fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv 76 (275)
T 3hyh_A 26 FGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHII 76 (275)
T ss_dssp -CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBC
T ss_pred CeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCC
Confidence 377888766532 112 2233445678899999999999999875
No 16
>2l92_A Histone family protein nucleoid-structuring prote; H-NS, at HOOK, DNA binding protein; NMR {Burkholderia vietnamiensis}
Probab=22.29 E-value=36 Score=20.59 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=13.8
Q ss_pred CCceeeecccccccc
Q psy1832 16 KGNIFRGKYRIVEPV 30 (111)
Q Consensus 16 ~G~~w~GK~R~~~~v 30 (111)
+|..|-|.+|.|.-|
T Consensus 12 ~G~TWsGRGR~P~Wi 26 (50)
T 2l92_A 12 TGKTWSGRGRQPAWL 26 (50)
T ss_dssp TCCEECSCSSCCSTT
T ss_pred CCCeecCCCCCCccc
Confidence 599999999999887
No 17
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=21.74 E-value=48 Score=23.35 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=27.5
Q ss_pred CCceeeecccc---------ccccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1832 16 KGNIFRGKYRI---------VEPVTHLRKAIKIEEFKIEERNMFLLRHPYLT 58 (111)
Q Consensus 16 ~G~~w~GK~R~---------~~~vs~~~k~~~~~rle~E~enm~~Ls~PYLT 58 (111)
.|.+|.|++.. ++.+.......-.+++..|.+.+.-|.||++.
T Consensus 25 ~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~ 76 (281)
T 3cc6_A 25 FGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIV 76 (281)
T ss_dssp SSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBC
T ss_pred CeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcc
Confidence 47888875332 12222221223357889999999999999876
No 18
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=20.97 E-value=34 Score=24.23 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=27.8
Q ss_pred CCceeeeccccc---------cccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1832 16 KGNIFRGKYRIV---------EPVTHLRKAIKIEEFKIEERNMFLLRHPYLT 58 (111)
Q Consensus 16 ~G~~w~GK~R~~---------~~vs~~~k~~~~~rle~E~enm~~Ls~PYLT 58 (111)
.|.+|.|.+... +.+.........+++..|.+.+.-|.||++-
T Consensus 28 ~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv 79 (281)
T 1mp8_A 28 FGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIV 79 (281)
T ss_dssp SSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBC
T ss_pred CeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccc
Confidence 378888866431 1111222234567888999999999999875
Done!