RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1832
         (111 letters)



>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 307

 Score = 26.5 bits (58), Expect = 0.69
 Identities = 8/47 (17%), Positives = 19/47 (40%)

Query: 51  LLRHPYLTEEEELVHLKDLERNENFRRERRALKLQKFIKHTKLTDHL 97
            L+HP++  +  L        +E  ++     K ++    T +  H+
Sbjct: 261 ALQHPWIAGDTALDKNIHQSVSEQIKKNFAKSKWKQAFNATAVVRHM 307


>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 309

 Score = 25.3 bits (55), Expect = 1.7
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 51  LLRHPYLTEEEELVHLKDL-ERNENFRRERRALKLQKFIK 89
           LL+H ++  E     + DL +R ++  RE   L+ +K  K
Sbjct: 264 LLKHRFVLRERPPTVIMDLIQRTKDAVRELDNLQYRKMKK 303


>d2c1ia2 d.341.1.1 (A:46-267) Peptidoglycan GlcNAc deacetylase
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 222

 Score = 25.3 bits (55), Expect = 1.9
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 27  VEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLERNENFRRERRALKLQK 86
           V      ++   +  FKIEE     L   +LTE+ +   L  L  + +  +E+   +L  
Sbjct: 80  VVNRNVTKQIYDLVAFKIEETEKTSLGKVHLTEDGQPFTLDQLFSDASKAKEQLIKELTS 139

Query: 87  F-----IKHTKLTDHLSDLRYQD 104
           F     I+  +    + +   QD
Sbjct: 140 FIEDKKIEQDQSEQIVKNFSDQD 162


>d2ddza1 d.104.1.4 (A:3-190) Uncharacterized protein PH0223
          {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 188

 Score = 24.4 bits (53), Expect = 3.9
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 40 EEFKIEERNMFLLRHPYLTEEEELVHLKDLERNE 73
            F I   ++ + R     + EE+V ++DL   +
Sbjct: 26 RNFGILGDSLVVFRGKCNVKVEEMVDIEDLRLRK 59


>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 321

 Score = 24.2 bits (52), Expect = 4.4
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 51  LLRHPYLTEEEELVHLKDLERNENFRRERRALK 83
            L+HP+L ++ E V  K +   ++ R     +K
Sbjct: 255 ALQHPWLKQKIERVSTKVIRTLKHRRYYHTLIK 287


>d1vpma_ d.38.1.1 (A:) Acyl-CoA hydrolase BH0798 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 155

 Score = 23.4 bits (50), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 58  TEEEELVHLKDLERNENFRRERRAL 82
           TEEE+ ++     R EN R++R AL
Sbjct: 132 TEEEKRLYETAPARKEN-RKKRAAL 155


>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle
          domain {Baker's yeast (Saccharomyces cerevisiae)
          [TaxId: 4932]}
          Length = 238

 Score = 23.3 bits (50), Expect = 7.9
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 21 RGKYRIVEPVTHLRKAIKIEEFKIEERN---MFLLRHP 55
          RG+Y I      +R   K  E+K++ R    +  L   
Sbjct: 18 RGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKA 55


>d1r0va1 c.52.2.1 (A:62-139) Dimeric tRNA splicing endonuclease,
          domains 2 and 4 {Archaeon Archaeoglobus fulgidus
          [TaxId: 2234]}
          Length = 78

 Score = 22.7 bits (48), Expect = 8.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 34 RKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLE 70
          RK I++EE   + RN   LR   + EE E+ + +  E
Sbjct: 38 RKTIRMEEIAEKARNFDELRLAVVDEESEITYFRVYE 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.142    0.414 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 450,441
Number of extensions: 21659
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 29
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)