BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1833
         (105 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VR0|A Chain A, Crystal Structure Of Putative 2-Phosphosulfolactate
          Phosphatase (15026306) From Clostridium Acetobutylicum
          At 2.6 A Resolution
 pdb|1VR0|B Chain B, Crystal Structure Of Putative 2-Phosphosulfolactate
          Phosphatase (15026306) From Clostridium Acetobutylicum
          At 2.6 A Resolution
 pdb|1VR0|C Chain C, Crystal Structure Of Putative 2-Phosphosulfolactate
          Phosphatase (15026306) From Clostridium Acetobutylicum
          At 2.6 A Resolution
          Length = 247

 Score = 25.8 bits (55), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 55 PYLTEEEELVHLKDLDRNENFRRERRALKLQKF 87
          P LT EE L  +K+  ++     ER+ LK++ F
Sbjct: 59 PVLTVEEALKKVKEYGKDAILGGERKGLKIEGF 91


>pdb|3AYH|A Chain A, Crystal Structure Of The C1725 SUBCOMPLEX FROM S. POMBE
          RNA Polymerase Iii
          Length = 136

 Score = 25.8 bits (55), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 53 RHPYLTEEEELVHLKDLDRNENFRRERRA 81
          R  YLT  E   HLK+++  +N R + R 
Sbjct: 14 RDAYLTNAEVFFHLKEMENEQNARTQERG 42


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.143    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,755,140
Number of Sequences: 62578
Number of extensions: 82128
Number of successful extensions: 233
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 2
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)