BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1833
         (105 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9CQF8|RT63_MOUSE Ribosomal protein 63, mitochondrial OS=Mus musculus GN=Mrp63 PE=2
          SV=1
          Length = 102

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 1  MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE 60
          M LT +LLRG  + P G  + GK+R    V+   K   I   ++E  N + L  PY+T E
Sbjct: 1  MFLTAVLLRG--RIP-GRQWIGKHRRPRTVSFQAKESMIRRLEVEAENHYWLSMPYMTAE 57

Query: 61 EELVHLKDLDRNENFRRERRALKLQKFIKHTKLTDHL 97
          +E  H  +  R + F    +A    KF KH  + D L
Sbjct: 58 QECGHAAE-RRAQAF-EAIKAAATSKFPKHRYIADQL 92


>sp|Q6PBR7|RT63_DANRE Ribosomal protein 63, mitochondrial OS=Danio rerio GN=mrp63 PE=2
          SV=1
          Length = 103

 Score = 37.7 bits (86), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 5/98 (5%)

Query: 1  MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE 60
          M LT  LLR   K   G  + GKYR   PVT   K   I+  + E  N + +  P++T E
Sbjct: 1  MFLTLALLR---KGIPGKQWIGKYRRPRPVTWQIKRNVIKRLEQEAENEYWISRPFMTLE 57

Query: 61 EELVHLKDLDRNENFRRERRALKLQKFIKHTKLTDHLS 98
          +E  H     R E   ++ +A +  KF +H  + D L+
Sbjct: 58 QERGH--AAQRREWMWQQIKAERQAKFPEHKYIADQLN 93


>sp|Q3ZC04|RT63_BOVIN Ribosomal protein 63, mitochondrial OS=Bos taurus GN=MRP63 PE=1
          SV=1
          Length = 102

 Score = 37.0 bits (84), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 1  MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE 60
          M LT +L RG  + P G  + GK+R    V+ L K   I   +IE  N + L  P+LT E
Sbjct: 1  MFLTALLCRG--RIP-GRQWIGKHRRPRTVSALAKQNMIRRLEIEAENHYWLSRPFLTAE 57

Query: 61 EELVH 65
          +E  H
Sbjct: 58 QERGH 62


>sp|Q9BQC6|RT63_HUMAN Ribosomal protein 63, mitochondrial OS=Homo sapiens GN=MRP63 PE=1
          SV=1
          Length = 102

 Score = 35.8 bits (81), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 1  MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE 60
          M LT +L RG  + P G  + GK+R    V+   K   I   +IE  N + L  PY+T E
Sbjct: 1  MFLTALLWRG--RIP-GRQWIGKHRRPRFVSLRAKQNMIRRLEIEAENHYWLSMPYMTRE 57

Query: 61 EELVHLKDLDRNENFRRERRALKLQKFIKHTKLTDHL 97
          +E  H   + R E F    +A    KF  H  + D L
Sbjct: 58 QERGH-AAVRRREAF-EAIKAAATSKFPPHRFIADQL 92


>sp|Q7VQW6|HIS4_BLOFL 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
          imidazole-4-carboxamide isomerase OS=Blochmannia
          floridanus GN=hisA PE=3 SV=1
          Length = 251

 Score = 32.0 bits (71), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 48 NMFLLRHPYLTEEEELVHLKDLDRNENFRRERRALKLQKFIKHTKLTDHL 97
          N + +   Y+ +   ++HL DLD   N   + R L L K + HT +T HL
Sbjct: 29 NPYSILSTYVQQGATMIHLVDLDGARN--PKNRQLSLIKELTHTAITSHL 76


>sp|A9B4R2|NRDR_HERA2 Transcriptional repressor NrdR OS=Herpetosiphon aurantiacus
          (strain ATCC 23779 / DSM 785) GN=nrdR PE=3 SV=1
          Length = 150

 Score = 30.8 bits (68), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 52 LRHPYLTEEEELVHLKDLDRNENFRRERRA 81
          +R PY T E  ++  ++LD  E  RR RR 
Sbjct: 1  MRCPYCTGESAVIDTRELDNGETIRRRRRC 30


>sp|B2THU3|COMB_CLOBB Probable 2-phosphosulfolactate phosphatase OS=Clostridium
          botulinum (strain Eklund 17B / Type B) GN=comB PE=3
          SV=1
          Length = 238

 Score = 30.0 bits (66), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 55 PYLTEEEELVHLKDLDRNEN-FRRERRALKLQKF 87
          PYLT EE L   K  D NE     ERRA+K++ F
Sbjct: 47 PYLTVEETLEEAKKYDNNEVILGGERRAVKIEGF 80


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.142    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,762,303
Number of Sequences: 539616
Number of extensions: 1536477
Number of successful extensions: 4048
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4035
Number of HSP's gapped (non-prelim): 23
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)