Query psy1833
Match_columns 105
No_of_seqs 56 out of 58
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 17:33:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 58.2 3.5 0.00012 31.6 1.2 41 16-58 54-106 (329)
2 4asz_A BDNF/NT-3 growth factor 56.3 5 0.00017 30.3 1.8 41 16-58 26-78 (299)
3 4gt4_A Tyrosine-protein kinase 48.3 7.9 0.00027 29.3 1.8 41 16-58 39-92 (308)
4 4g31_A Eukaryotic translation 45.6 7.6 0.00026 29.2 1.3 41 16-58 18-66 (299)
5 3omv_A RAF proto-oncogene seri 40.0 12 0.00042 28.5 1.8 41 16-58 49-95 (307)
6 2vi6_A Homeobox protein nanog; 39.4 54 0.0019 18.8 5.1 38 50-87 21-58 (62)
7 3fpq_A Serine/threonine-protei 35.6 14 0.00049 27.8 1.5 41 16-58 39-88 (290)
8 3hyh_A Carbon catabolite-derep 34.8 21 0.00072 26.7 2.3 41 16-58 26-76 (275)
9 1x2m_A LAG1 longevity assuranc 34.2 65 0.0022 19.6 4.2 42 47-88 16-57 (64)
10 1yz8_P Pituitary homeobox 2; D 32.0 51 0.0017 19.3 3.3 25 50-74 21-45 (68)
11 4b9d_A Serine/threonine-protei 31.8 28 0.00097 27.1 2.7 41 16-58 37-86 (350)
12 1iyc_A Scarabaecin; antifungal 30.8 11 0.00039 21.0 0.2 14 11-24 15-28 (36)
13 1du6_A PBX1, homeobox protein 30.4 80 0.0027 18.1 5.1 36 52-87 26-61 (64)
14 3k2a_A Homeobox protein MEIS2; 27.8 30 0.001 20.7 1.7 30 52-81 21-50 (67)
15 2h1k_A IPF-1, pancreatic and d 25.7 1E+02 0.0034 17.7 4.9 32 51-82 22-53 (63)
16 1luf_A Muscle-specific tyrosin 25.3 30 0.001 24.8 1.6 42 16-59 60-114 (343)
17 1akh_A Protein (mating-type pr 24.8 1E+02 0.0035 17.4 4.6 34 51-84 24-57 (61)
18 3a02_A Homeobox protein arista 24.4 1E+02 0.0036 17.4 4.2 34 51-84 18-51 (60)
19 1x2n_A Homeobox protein pknox1 24.2 91 0.0031 18.4 3.5 27 53-79 31-57 (73)
20 1wh7_A ZF-HD homeobox family p 23.2 64 0.0022 20.0 2.7 35 54-88 43-77 (80)
21 1fmk_A C-SRC, P60-SRC, tyrosin 22.9 42 0.0014 26.0 2.1 41 16-58 197-242 (452)
22 2dmn_A Homeobox protein TGIF2L 22.6 65 0.0022 19.9 2.7 31 53-83 31-61 (83)
23 2lk2_A Homeobox protein TGIF1; 22.5 58 0.002 21.2 2.5 18 53-70 29-46 (89)
24 4aw0_A HPDK1, 3-phosphoinositi 22.1 30 0.001 26.6 1.1 41 16-58 45-95 (311)
25 4fih_A Serine/threonine-protei 21.9 25 0.00085 27.4 0.7 41 16-58 87-134 (346)
26 3qd2_B Eukaryotic translation 21.4 39 0.0013 23.8 1.6 42 16-59 19-68 (332)
27 2qkw_B Protein kinase; three-h 21.2 34 0.0012 24.5 1.2 41 16-58 52-98 (321)
28 4fie_A Serine/threonine-protei 20.8 29 0.00099 27.9 0.9 41 16-58 164-211 (423)
29 4fvq_A Tyrosine-protein kinase 20.5 49 0.0017 23.0 1.9 41 16-58 21-75 (289)
30 4b99_A Mitogen-activated prote 20.4 59 0.002 25.4 2.6 41 16-58 67-116 (398)
31 1b72_B Protein (PBX1); homeodo 20.3 1.5E+02 0.0053 17.9 4.3 28 52-79 24-51 (87)
32 2cra_A Homeobox protein HOX-B1 20.3 1.4E+02 0.0048 17.4 5.3 39 51-89 26-64 (70)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=58.22 E-value=3.5 Score=31.64 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=30.4
Q ss_pred CCceeeccccc-----------cccch-hhhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy1833 16 KGNIFRGKYRI-----------VEPVT-HLRKAIKIEEFKIEERNMFLLRHPYLT 58 (105)
Q Consensus 16 ~G~~w~GK~R~-----------~~~vS-~k~~~~~~~~le~E~enm~~Ls~PYLT 58 (105)
.|.||.|+++. ++.+. ..... .++|.+|.+.|.-|+||.+-
T Consensus 54 fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~--~~~f~~E~~il~~l~HpnIV 106 (329)
T 4aoj_A 54 FGKVFLAECHNLLPEQDKMLVAVKALKEASESA--RQDFQREAELLTMLQHQHIV 106 (329)
T ss_dssp SEEEEEEEESSSCC---CEEEEEEEESCCSHHH--HHHHHHHHHHHTTCCCTTBC
T ss_pred CcEEEEEEECCcccCCCCeEEEEEEECcCCHHH--HHHHHHHHHHHHhCCCCCCC
Confidence 48999998763 22233 33444 78899999999999999875
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=56.32 E-value=5 Score=30.33 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=30.6
Q ss_pred CCceeeccccc-----------cccch-hhhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy1833 16 KGNIFRGKYRI-----------VEPVT-HLRKAIKIEEFKIEERNMFLLRHPYLT 58 (105)
Q Consensus 16 ~G~~w~GK~R~-----------~~~vS-~k~~~~~~~~le~E~enm~~Ls~PYLT 58 (105)
.|.||.|+++. ++.+. ..... .++|.+|.+.|.=|.||.+-
T Consensus 26 fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~--~~~f~~E~~il~~l~HpnIV 78 (299)
T 4asz_A 26 FGKVFLAECYNLCPEQDKILVAVKTLKDASDNA--RKDFHREAELLTNLQHEHIV 78 (299)
T ss_dssp CCCEEEEEECSCC----CEEEEEEEECSCCHHH--HHHHHHHHHHHTTCCCTTBC
T ss_pred CcEEEEEEECCcccCCCCEEEEEEEeCCCChHH--HHHHHHHHHHHHhCCCCCCc
Confidence 48999998763 22233 33445 78899999999999999875
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=48.32 E-value=7.9 Score=29.33 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=29.5
Q ss_pred CCceeeccccc-----------cccch--hhhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy1833 16 KGNIFRGKYRI-----------VEPVT--HLRKAIKIEEFKIEERNMFLLRHPYLT 58 (105)
Q Consensus 16 ~G~~w~GK~R~-----------~~~vS--~k~~~~~~~~le~E~enm~~Ls~PYLT 58 (105)
.|.||.|.++. ++.++ ..... .++|..|.+.+.=|.||.+-
T Consensus 39 fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~--~~~f~~E~~il~~l~HpNIV 92 (308)
T 4gt4_A 39 FGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPL--REEFRHEAMLRARLQHPNVV 92 (308)
T ss_dssp SCEEEEEEEC-------CEEEEEEECCC-CCC-C--HHHHHHHHHHHHHCCCTTBC
T ss_pred CcEEEEEEEcCCccCCCCeEEEEEEECcccChHH--HHHHHHHHHHHHhCCCCCCC
Confidence 58999998752 23333 22344 78899999999999999875
No 4
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=45.59 E-value=7.6 Score=29.16 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=28.8
Q ss_pred CCceeeccccc------cccch--hhhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy1833 16 KGNIFRGKYRI------VEPVT--HLRKAIKIEEFKIEERNMFLLRHPYLT 58 (105)
Q Consensus 16 ~G~~w~GK~R~------~~~vS--~k~~~~~~~~le~E~enm~~Ls~PYLT 58 (105)
.|.||.++++. ++.|. ..... .+++.+|.+.+.-|+||++-
T Consensus 18 fg~V~~a~~~~~~~~vAiK~i~~~~~~~~--~~~~~~E~~il~~l~HpnIV 66 (299)
T 4g31_A 18 FGVVFEAKNKVDDCNYAIKRIRLPNRELA--REKVMREVKALAKLEHPGIV 66 (299)
T ss_dssp --EEEEEEETTTCCEEEEEEEEECSSHHH--HHHHHHHHHHHTTCCCTTBC
T ss_pred CeEEEEEEECCCCCEEEEEEEeccCCHHH--HHHHHHHHHHHHhCCCCCCC
Confidence 37888888772 23333 33445 78899999999999999874
No 5
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=40.00 E-value=12 Score=28.47 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=30.7
Q ss_pred CCceeeccccccccch------hhhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy1833 16 KGNIFRGKYRIVEPVT------HLRKAIKIEEFKIEERNMFLLRHPYLT 58 (105)
Q Consensus 16 ~G~~w~GK~R~~~~vS------~k~~~~~~~~le~E~enm~~Ls~PYLT 58 (105)
.|.||.|+++....|= ..... .++|..|.+.+.=|.||.+-
T Consensus 49 fG~Vy~~~~~~~vAvK~~~~~~~~~~~--~~~f~~E~~il~~l~HpNIV 95 (307)
T 3omv_A 49 FGTVYKGKWHGDVAVKILKVVDPTPEQ--FQAFRNEVAVLRKTRHVNIL 95 (307)
T ss_dssp SSEEEEEESSSEEEEEECCCSSCCHHH--HHHHHHHHHHHTTCCCTTBC
T ss_pred CcEEEEEEECCcEEEEEEEecCCCHHH--HHHHHHHHHHHHhCCCCCEe
Confidence 5899999988543322 22334 68899999999999999765
No 6
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=39.38 E-value=54 Score=18.79 Aligned_cols=38 Identities=11% Similarity=-0.042 Sum_probs=26.9
Q ss_pred HHHhcCCCCHHHhhhhhHHHhHHHHHHHHHHHHHHcCC
Q psy1833 50 FLLRHPYLTEEEELVHLKDLDRNENFRRERRALKLQKF 87 (105)
Q Consensus 50 ~~Ls~PYLT~EqE~gh~~el~~r~~~~~~~~~~~~~Kf 87 (105)
.+...||++.++=..-++.++--+..+.-|.+.+++|.
T Consensus 21 ~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 58 (62)
T 2vi6_A 21 RFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKC 58 (62)
T ss_dssp HHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTC
T ss_pred HHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcch
Confidence 34679999999888778887766666666666655543
No 7
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=35.63 E-value=14 Score=27.83 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=28.8
Q ss_pred CCceeecccccc------ccch---hhhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy1833 16 KGNIFRGKYRIV------EPVT---HLRKAIKIEEFKIEERNMFLLRHPYLT 58 (105)
Q Consensus 16 ~G~~w~GK~R~~------~~vS---~k~~~~~~~~le~E~enm~~Ls~PYLT 58 (105)
.|.||.|.++.. +.+. ..... .++|.+|.+.+.-|.||++-
T Consensus 39 fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~--~~~~~~E~~il~~l~HpnIV 88 (290)
T 3fpq_A 39 FKTVYKGLDTETTVEVAWCELQDRKLTKSE--RQRFKEEAEMLKGLQHPNIV 88 (290)
T ss_dssp SEEEEEEEETTTCCEEEEEEEEGGGSCHHH--HHHHHHHHHHHHTCCCTTBC
T ss_pred CcEEEEEEECCCCeEEEEEEEchhhCCHHH--HHHHHHHHHHHHhCCCCCCC
Confidence 378888887732 2222 12233 67899999999999999875
No 8
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=34.78 E-value=21 Score=26.72 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=27.4
Q ss_pred CCceeecccccc------ccch----hhhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy1833 16 KGNIFRGKYRIV------EPVT----HLRKAIKIEEFKIEERNMFLLRHPYLT 58 (105)
Q Consensus 16 ~G~~w~GK~R~~------~~vS----~k~~~~~~~~le~E~enm~~Ls~PYLT 58 (105)
.|.||.+.++.. +.++ ..... .+++.+|.+.+.-|.||++-
T Consensus 26 fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~--~~~~~~Ei~il~~l~HpnIv 76 (275)
T 3hyh_A 26 FGKVKLAYHTTTGQKVALKIINKKVLAKSDM--QGRIEREISYLRLLRHPHII 76 (275)
T ss_dssp -CCEEEEECTTTCCEEEEEEEECC------C--HHHHHHHHHHHHHCCCTTBC
T ss_pred CeEEEEEEECCCCCEEEEEEEeHHHcCCHHH--HHHHHHHHHHHHHCCCCCCC
Confidence 378888877631 2222 23344 78899999999999999875
No 9
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=34.19 E-value=65 Score=19.59 Aligned_cols=42 Identities=12% Similarity=-0.077 Sum_probs=28.9
Q ss_pred HHHHHHhcCCCCHHHhhhhhHHHhHHHHHHHHHHHHHHcCCC
Q psy1833 47 RNMFLLRHPYLTEEEELVHLKDLDRNENFRRERRALKLQKFI 88 (105)
Q Consensus 47 enm~~Ls~PYLT~EqE~gh~~el~~r~~~~~~~~~~~~~Kf~ 88 (105)
|..|--..+|+|.++=..-++.|+--+..+.-|.+.++.|..
T Consensus 16 E~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k 57 (64)
T 1x2m_A 16 EKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEK 57 (64)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccC
Confidence 444445689999998777888887666666666666655443
No 10
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=31.97 E-value=51 Score=19.35 Aligned_cols=25 Identities=12% Similarity=-0.068 Sum_probs=17.6
Q ss_pred HHHhcCCCCHHHhhhhhHHHhHHHH
Q psy1833 50 FLLRHPYLTEEEELVHLKDLDRNEN 74 (105)
Q Consensus 50 ~~Ls~PYLT~EqE~gh~~el~~r~~ 74 (105)
.+...||.+.++=..-+..++--+.
T Consensus 21 ~F~~~~yp~~~~r~~La~~l~l~~~ 45 (68)
T 1yz8_P 21 TFQRNRYPDMSTREEIAVWTNLTEA 45 (68)
T ss_dssp HHTTCSSCCTTTTTHHHHHTTSCHH
T ss_pred HHHccCCCCHHHHHHHHHHHCcCHH
Confidence 3567999999887777777653333
No 11
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=31.84 E-value=28 Score=27.14 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=28.5
Q ss_pred CCceeecccccc------ccch---hhhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy1833 16 KGNIFRGKYRIV------EPVT---HLRKAIKIEEFKIEERNMFLLRHPYLT 58 (105)
Q Consensus 16 ~G~~w~GK~R~~------~~vS---~k~~~~~~~~le~E~enm~~Ls~PYLT 58 (105)
.|.||.+.++.. +.|. ..... ++++.+|.+.+.-|.||++-
T Consensus 37 fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~--~~~~~~E~~il~~l~HpnIV 86 (350)
T 4b9d_A 37 FGKAILVKSTEDGRQYVIKEINISRMSSKE--REESRREVAVLANMKHPNIV 86 (350)
T ss_dssp --CEEEEEETTTCCEEEEEEEECTTSCHHH--HHHHHHHHHHHHHCCCTTBC
T ss_pred CeEEEEEEECCCCCEEEEEEEehHHCCHHH--HHHHHHHHHHHHHCCCCCCC
Confidence 488999888732 2222 22334 78899999999999999876
No 12
>1iyc_A Scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, antifungal protein; NMR {Synthetic} SCOP: g.31.1.2
Probab=30.79 E-value=11 Score=21.01 Aligned_cols=14 Identities=29% Similarity=0.600 Sum_probs=10.9
Q ss_pred cCCCCCCceeeccc
Q psy1833 11 ARKYPKGNIFRGKY 24 (105)
Q Consensus 11 ~~~ip~G~~w~GK~ 24 (105)
..+-|.|++|-|=.
T Consensus 15 rsncpkgkvwngfd 28 (36)
T 1iyc_A 15 RSNCPKGKVWNGFD 28 (36)
T ss_dssp TSCCCSSCEEETTE
T ss_pred ccCCCCcceecCcc
Confidence 35788999998843
No 13
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=30.41 E-value=80 Score=18.08 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=27.4
Q ss_pred HhcCCCCHHHhhhhhHHHhHHHHHHHHHHHHHHcCC
Q psy1833 52 LRHPYLTEEEELVHLKDLDRNENFRRERRALKLQKF 87 (105)
Q Consensus 52 Ls~PYLT~EqE~gh~~el~~r~~~~~~~~~~~~~Kf 87 (105)
..+||.|.++=..-++.++--+..+.-|.+-++.+.
T Consensus 26 ~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~ 61 (64)
T 1du6_A 26 LSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRY 61 (64)
T ss_dssp TTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTS
T ss_pred ccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 579999999888888888766666677766665543
No 14
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=27.77 E-value=30 Score=20.68 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=18.7
Q ss_pred HhcCCCCHHHhhhhhHHHhHHHHHHHHHHH
Q psy1833 52 LRHPYLTEEEELVHLKDLDRNENFRRERRA 81 (105)
Q Consensus 52 Ls~PYLT~EqE~gh~~el~~r~~~~~~~~~ 81 (105)
+.+||.|.++=..-+..++--...+.-|.+
T Consensus 21 ~~~pyp~~~~r~~La~~~~l~~~qV~~WFq 50 (67)
T 3k2a_A 21 LTHPYPSEEQKKQLAQDTGLTILQVNNWFI 50 (67)
T ss_dssp TTSCCCCHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHhCcCHHHhhhhhH
Confidence 379999998877666666533333333333
No 15
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=25.73 E-value=1e+02 Score=17.68 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=20.9
Q ss_pred HHhcCCCCHHHhhhhhHHHhHHHHHHHHHHHH
Q psy1833 51 LLRHPYLTEEEELVHLKDLDRNENFRRERRAL 82 (105)
Q Consensus 51 ~Ls~PYLT~EqE~gh~~el~~r~~~~~~~~~~ 82 (105)
+...||.+.++=..-+..++--+..+.-|.+.
T Consensus 22 F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 53 (63)
T 2h1k_A 22 FLFNKYISRPRRVELAVMLNLTERHIKIWFQN 53 (63)
T ss_dssp HHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHh
Confidence 45799999998777777776444434444333
No 16
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=25.31 E-value=30 Score=24.80 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=29.2
Q ss_pred CCceeeccccc--------cccc---h--hhhhhhhHHHHHHHHHHHHHHhcCCCCH
Q psy1833 16 KGNIFRGKYRI--------VEPV---T--HLRKAIKIEEFKIEERNMFLLRHPYLTE 59 (105)
Q Consensus 16 ~G~~w~GK~R~--------~~~v---S--~k~~~~~~~~le~E~enm~~Ls~PYLT~ 59 (105)
.|.+|.|++.. ...| . ..... .+++..|.+.+.-|.||++-.
T Consensus 60 ~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~--~~~~~~E~~~l~~l~hp~iv~ 114 (343)
T 1luf_A 60 FGRVFQARAPGLLPYEPFTMVAVKMLKEEASADM--QADFQREAALMAEFDNPNIVK 114 (343)
T ss_dssp SCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHH--HHHHHHHHHHHHTCCCTTBCC
T ss_pred CeeEEEEEecCcCCCCCceeEEEEEeccccCHHH--HHHHHHHHHHHHhCCCCCEEE
Confidence 48899988762 1111 1 22334 788999999999999998863
No 17
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=24.80 E-value=1e+02 Score=17.39 Aligned_cols=34 Identities=18% Similarity=-0.063 Sum_probs=23.2
Q ss_pred HHhcCCCCHHHhhhhhHHHhHHHHHHHHHHHHHH
Q psy1833 51 LLRHPYLTEEEELVHLKDLDRNENFRRERRALKL 84 (105)
Q Consensus 51 ~Ls~PYLT~EqE~gh~~el~~r~~~~~~~~~~~~ 84 (105)
+..+||.+.++=..-+..++--+..+.-|.+.++
T Consensus 24 f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR 57 (61)
T 1akh_A 24 FRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKR 57 (61)
T ss_dssp HHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567999999888777777655555555554443
No 18
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=24.39 E-value=1e+02 Score=17.38 Aligned_cols=34 Identities=9% Similarity=-0.139 Sum_probs=22.7
Q ss_pred HHhcCCCCHHHhhhhhHHHhHHHHHHHHHHHHHH
Q psy1833 51 LLRHPYLTEEEELVHLKDLDRNENFRRERRALKL 84 (105)
Q Consensus 51 ~Ls~PYLT~EqE~gh~~el~~r~~~~~~~~~~~~ 84 (105)
+...||.+.++=..-+++++--+..+.-|.+.++
T Consensus 18 F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR 51 (60)
T 3a02_A 18 FSRTHYPDVFTREELAMKIGLTEARIQVWFQNRR 51 (60)
T ss_dssp HHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhh
Confidence 4679999998877777777654454444544443
No 19
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=24.18 E-value=91 Score=18.37 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=18.2
Q ss_pred hcCCCCHHHhhhhhHHHhHHHHHHHHH
Q psy1833 53 RHPYLTEEEELVHLKDLDRNENFRRER 79 (105)
Q Consensus 53 s~PYLT~EqE~gh~~el~~r~~~~~~~ 79 (105)
.+||.|.++=..-+..++--+..+.-|
T Consensus 31 ~~~yp~~~~r~~La~~~~L~~~qV~~W 57 (73)
T 1x2n_A 31 GHPYPTEDEKKQIAAQTNLTLLQVNNW 57 (73)
T ss_dssp TSCCCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 499999998877777766433333333
No 20
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=23.24 E-value=64 Score=20.04 Aligned_cols=35 Identities=0% Similarity=-0.286 Sum_probs=26.2
Q ss_pred cCCCCHHHhhhhhHHHhHHHHHHHHHHHHHHcCCC
Q psy1833 54 HPYLTEEEELVHLKDLDRNENFRRERRALKLQKFI 88 (105)
Q Consensus 54 ~PYLT~EqE~gh~~el~~r~~~~~~~~~~~~~Kf~ 88 (105)
.||++.++=..-+.+++--+..+.-|.+-+++|+.
T Consensus 43 ~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~ 77 (80)
T 1wh7_A 43 IQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP 77 (80)
T ss_dssp CCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSC
T ss_pred CCCCCHHHHHHHHHHhCcCcCcccccccccccCCC
Confidence 99999887777777777666667777776666654
No 21
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=22.91 E-value=42 Score=25.96 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=28.9
Q ss_pred CCceeeccccccccch----hh-hhhhhHHHHHHHHHHHHHHhcCCCC
Q psy1833 16 KGNIFRGKYRIVEPVT----HL-RKAIKIEEFKIEERNMFLLRHPYLT 58 (105)
Q Consensus 16 ~G~~w~GK~R~~~~vS----~k-~~~~~~~~le~E~enm~~Ls~PYLT 58 (105)
.|.+|.|.+.....|- .. ..- .+++..|.+.|.-|+||++-
T Consensus 197 fg~Vy~~~~~~~~~vavK~~~~~~~~--~~~~~~E~~~l~~l~hp~iv 242 (452)
T 1fmk_A 197 FGEVWMGTWNGTTRVAIKTLKPGTMS--PEAFLQEAQVMKKLRHEKLV 242 (452)
T ss_dssp SCEEEEEEETTTEEEEEEECCTTSSC--HHHHHHHHHHHHHCCCTTBC
T ss_pred CeEEEEEEECCCceEEEEEeccCCCC--HHHHHHHHHHHHhCCCCCEe
Confidence 4889999887533333 11 122 56789999999999999875
No 22
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=22.57 E-value=65 Score=19.86 Aligned_cols=31 Identities=13% Similarity=-0.052 Sum_probs=20.0
Q ss_pred hcCCCCHHHhhhhhHHHhHHHHHHHHHHHHH
Q psy1833 53 RHPYLTEEEELVHLKDLDRNENFRRERRALK 83 (105)
Q Consensus 53 s~PYLT~EqE~gh~~el~~r~~~~~~~~~~~ 83 (105)
.+||.|.++=..-+..++--+..+.-|.+-+
T Consensus 31 ~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNr 61 (83)
T 2dmn_A 31 FKAYPSEEEKQMLSEKTNLSLLQISNWFINA 61 (83)
T ss_dssp TTCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHCcCHHHhhHHhhhh
Confidence 4799999887777777664444444444443
No 23
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=22.53 E-value=58 Score=21.22 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=13.4
Q ss_pred hcCCCCHHHhhhhhHHHh
Q psy1833 53 RHPYLTEEEELVHLKDLD 70 (105)
Q Consensus 53 s~PYLT~EqE~gh~~el~ 70 (105)
.+||.|.++=..-+++++
T Consensus 29 ~npYPs~~ek~~LA~~tg 46 (89)
T 2lk2_A 29 YNAYPSEQEKALLSQQTH 46 (89)
T ss_dssp GGGSCCHHHHHHHHHHSS
T ss_pred cCCCCCHHHHHHHHHHHC
Confidence 399999998776666643
No 24
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=22.11 E-value=30 Score=26.58 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=29.6
Q ss_pred CCceeecccccc------ccch----hhhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy1833 16 KGNIFRGKYRIV------EPVT----HLRKAIKIEEFKIEERNMFLLRHPYLT 58 (105)
Q Consensus 16 ~G~~w~GK~R~~------~~vS----~k~~~~~~~~le~E~enm~~Ls~PYLT 58 (105)
.|.||.+.++.. +-|+ ...+. ++++.+|.+.+.-|.||++-
T Consensus 45 fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~--~~~~~~E~~il~~l~HpnIv 95 (311)
T 4aw0_A 45 FSTVVLARELATSREYAIKILEKRHIIKENK--VPYVTRERDVMSRLDHPFFV 95 (311)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEHHHHHHTTC--HHHHHHHHHHHTTCCCTTBC
T ss_pred CeEEEEEEECCCCCEEEEEEEEHHHCCCHHH--HHHHHHHHHHHHhCCCCCCC
Confidence 378888887732 2222 22344 78899999999999999986
No 25
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=21.86 E-value=25 Score=27.40 Aligned_cols=41 Identities=17% Similarity=0.071 Sum_probs=29.1
Q ss_pred CCceeeccccc------cccch-hhhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy1833 16 KGNIFRGKYRI------VEPVT-HLRKAIKIEEFKIEERNMFLLRHPYLT 58 (105)
Q Consensus 16 ~G~~w~GK~R~------~~~vS-~k~~~~~~~~le~E~enm~~Ls~PYLT 58 (105)
.|.||.+.++. ++.|. ..... .+.+.+|.+.|.-|.||++-
T Consensus 87 fG~V~~a~~~~tg~~vAiK~i~~~~~~~--~~~~~~Ei~il~~l~HpnIV 134 (346)
T 4fih_A 87 TGIVCIATVRSSGKLVAVKKMDLRKQQR--RELLFNEVVIMRDYQHENVV 134 (346)
T ss_dssp SCEEEEEEETTTCCEEEEEEEEGGGCSS--GGGGHHHHHHHHHCCCTTBC
T ss_pred CeEEEEEEECCCCCEEEEEEEecCchhH--HHHHHHHHHHHHhCCCCCCC
Confidence 48899988873 22222 22333 66788999999999999976
No 26
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=21.38 E-value=39 Score=23.82 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=30.0
Q ss_pred CCceeecccccc------ccch--hhhhhhhHHHHHHHHHHHHHHhcCCCCH
Q psy1833 16 KGNIFRGKYRIV------EPVT--HLRKAIKIEEFKIEERNMFLLRHPYLTE 59 (105)
Q Consensus 16 ~G~~w~GK~R~~------~~vS--~k~~~~~~~~le~E~enm~~Ls~PYLT~ 59 (105)
.|.+|.++++.. +.+. ..... .+++.+|.+.+.-|+||++-.
T Consensus 19 ~g~V~~a~~~~~~~~vavK~~~~~~~~~~--~~~~~~E~~~l~~l~hpniv~ 68 (332)
T 3qd2_B 19 FGVVFEAKNKVDDCNYAIKRIRLPNRELA--REKVMREVKALAKLEHPGIVR 68 (332)
T ss_dssp CSEEEEEEETTTCCEEEEEEEECCSTTTH--HHHHHHHHHHHTSCCCTTBCC
T ss_pred CeEEEEEEEcCCCcEEEEEEeecCCchhH--HHHHHHHHHHHHhCCCCCEee
Confidence 488999988722 2121 22334 788999999999999999863
No 27
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=21.17 E-value=34 Score=24.53 Aligned_cols=41 Identities=32% Similarity=0.506 Sum_probs=29.0
Q ss_pred CCceeeccccccccch------hhhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy1833 16 KGNIFRGKYRIVEPVT------HLRKAIKIEEFKIEERNMFLLRHPYLT 58 (105)
Q Consensus 16 ~G~~w~GK~R~~~~vS------~k~~~~~~~~le~E~enm~~Ls~PYLT 58 (105)
.|.+|.|.++.-..|. ..... .+++..|.+.+.-|.||++-
T Consensus 52 ~g~Vy~~~~~~~~~vavK~~~~~~~~~--~~~~~~E~~~l~~l~h~~iv 98 (321)
T 2qkw_B 52 FGKVYKGVLRDGAKVALKRRTPESSQG--IEEFETEIETLSFCRHPHLV 98 (321)
T ss_dssp SSEEEEEECTTCCEEEEEECCSCCSSH--HHHHHHHHHGGGSCCCTTBC
T ss_pred CeeEEEEEECCCCEEEEEEecccChHH--HHHHHHHHHHHHhCCCCCEe
Confidence 4889998876333332 22233 67889999999999999875
No 28
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=20.81 E-value=29 Score=27.90 Aligned_cols=41 Identities=17% Similarity=0.071 Sum_probs=29.5
Q ss_pred CCceeeccccc------cccch-hhhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy1833 16 KGNIFRGKYRI------VEPVT-HLRKAIKIEEFKIEERNMFLLRHPYLT 58 (105)
Q Consensus 16 ~G~~w~GK~R~------~~~vS-~k~~~~~~~~le~E~enm~~Ls~PYLT 58 (105)
.|.||.+.++. ++.|. ..... .+.+.+|.+.|.-|.||++-
T Consensus 164 fG~V~~a~~~~tg~~vAiK~i~~~~~~~--~~~~~~Ei~il~~l~HpnIV 211 (423)
T 4fie_A 164 TGIVCIATVRSSGKLVAVKKMDLRKQQR--RELLFNEVVIMRDYQHENVV 211 (423)
T ss_dssp SCEEEEEEETTTCCEEEEEEEESTTCSS--GGGHHHHHHHHHHCCCTTBC
T ss_pred CcEEEEEEECCCCCEEEEEEEeccchhH--HHHHHHHHHHHHhCCCCCCC
Confidence 48899998873 22233 23333 66788999999999999876
No 29
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=20.49 E-value=49 Score=22.97 Aligned_cols=41 Identities=32% Similarity=0.264 Sum_probs=29.0
Q ss_pred CCceeeccccccc--------cc-----h-hhhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy1833 16 KGNIFRGKYRIVE--------PV-----T-HLRKAIKIEEFKIEERNMFLLRHPYLT 58 (105)
Q Consensus 16 ~G~~w~GK~R~~~--------~v-----S-~k~~~~~~~~le~E~enm~~Ls~PYLT 58 (105)
.|.+|.|.++... .| . ..... .+++..|.+.+.-|.||++-
T Consensus 21 ~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~--~~~~~~E~~~l~~l~h~~iv 75 (289)
T 4fvq_A 21 FTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNY--SESFFEAASMMSKLSHKHLV 75 (289)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGG--HHHHHHHHHHHHTSCCTTBC
T ss_pred CceEEEEEEecccccccccchhhhhhhcccccHHH--HHHHHHHHHHHHhCCCCCEe
Confidence 4788888776422 12 1 22344 78899999999999999876
No 30
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=20.37 E-value=59 Score=25.38 Aligned_cols=41 Identities=10% Similarity=0.176 Sum_probs=28.1
Q ss_pred CCceeeccccc------cccch---hhhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy1833 16 KGNIFRGKYRI------VEPVT---HLRKAIKIEEFKIEERNMFLLRHPYLT 58 (105)
Q Consensus 16 ~G~~w~GK~R~------~~~vS---~k~~~~~~~~le~E~enm~~Ls~PYLT 58 (105)
.|.||.+.++. ++.|. ..... .+++.+|.+.+.-|.||.+-
T Consensus 67 fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~--~~~~~~Ei~il~~l~HpnIv 116 (398)
T 4b99_A 67 YGVVSSARRRLTGQQVAIKKIPNAFDVVTN--AKRTLRELKILKHFKHDNII 116 (398)
T ss_dssp SCEEEEEEETTTCCEEEEEEETTTTSSHHH--HHHHHHHHHHHHHCCCTTBC
T ss_pred CeEEEEEEECCCCCEEEEEEECccccchHH--HHHHHHHHHHHHhcCCCCcc
Confidence 37888888772 22232 22233 67788999999999999864
No 31
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=20.30 E-value=1.5e+02 Score=17.86 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=19.2
Q ss_pred HhcCCCCHHHhhhhhHHHhHHHHHHHHH
Q psy1833 52 LRHPYLTEEEELVHLKDLDRNENFRRER 79 (105)
Q Consensus 52 Ls~PYLT~EqE~gh~~el~~r~~~~~~~ 79 (105)
..+||.|.++=..-+..++--+..+.-|
T Consensus 24 ~~~~yp~~~~r~~La~~~~l~~~qV~~W 51 (87)
T 1b72_B 24 LSNPYPSEEAKEELAKKCGITVSQVSNW 51 (87)
T ss_dssp TTSCCCCHHHHHHHHHHHTSCHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 6799999998887777766433333333
No 32
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.29 E-value=1.4e+02 Score=17.39 Aligned_cols=39 Identities=10% Similarity=-0.073 Sum_probs=28.3
Q ss_pred HHhcCCCCHHHhhhhhHHHhHHHHHHHHHHHHHHcCCCC
Q psy1833 51 LLRHPYLTEEEELVHLKDLDRNENFRRERRALKLQKFIK 89 (105)
Q Consensus 51 ~Ls~PYLT~EqE~gh~~el~~r~~~~~~~~~~~~~Kf~~ 89 (105)
+...||.+.++=..-++.++--+..+.-|.+.+++|...
T Consensus 26 F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (70)
T 2cra_A 26 YAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 64 (70)
T ss_dssp HHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred HHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcc
Confidence 457899999998888888776666666666666655443
Done!