Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>psy1833
MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE
EELVHLKDLDRNENFRRERRALKLQKFIKHTKLTDHLSDRGKPLK

High Scoring Gene Products

The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy1833
        (105 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|E1C178 - symbol:MRP63 "Uncharacterized protein"...   105  5.5e-06   1
MGI|MGI:1915090 - symbol:Mrp63 "mitochondrial ribosomal p...    86  0.00057   1


>UNIPROTKB|E1C178 [details] [associations]
            symbol:MRP63 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003735 "structural constituent of ribosome"
            evidence=IEA] [GO:0005761 "mitochondrial ribosome" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] GO:GO:0006412 GO:GO:0003735
            GO:GO:0005761 GeneTree:ENSGT00390000008171 OMA:EAENEYW
            EMBL:AADN02005103 IPI:IPI00597633 Ensembl:ENSGALT00000027669
            Uniprot:E1C178
        Length = 102

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 35/100 (35%), Positives = 48/100 (48%)

Query:     1 MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRXXXXXXXXXXXXRNMFLLRHPYLTEE 60
             M LT  LLR  ++ P G  + GKYR    VT                N + L  PYLT +
Sbjct:     1 MFLTLALLR--KRIP-GKQWIGKYRRPRVVTTTMKQAMIRRLEIEAENEYWLSRPYLTRQ 57

Query:    61 EELVHLKD--LDRNENFRRERRALKLQKFIKHTKLTDHLS 98
             EE  H ++  + R E F+    ALK  KF +H  ++DHL+
Sbjct:    58 EECNHNREARVARWEAFK----ALKSSKFPEHRYMSDHLN 93


>MGI|MGI:1915090 [details] [associations]
            symbol:Mrp63 "mitochondrial ribosomal protein 63"
            species:10090 "Mus musculus" [GO:0003735 "structural constituent of
            ribosome" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0005761 "mitochondrial ribosome" evidence=IDA] [GO:0005840
            "ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IDA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            MGI:MGI:1915090 GO:GO:0006412 GO:GO:0003735 GO:GO:0005761 CTD:78988
            eggNOG:NOG85641 GeneTree:ENSGT00390000008171 HOGENOM:HOG000230903
            HOVERGEN:HBG079987 OMA:EAENEYW OrthoDB:EOG4C5CM0 InterPro:IPR016576
            PIRSF:PIRSF011124 EMBL:AK003130 EMBL:AK010282 EMBL:AK011558
            EMBL:AB049958 EMBL:BC049555 EMBL:BC055723 IPI:IPI00132487
            RefSeq:NP_080677.1 UniGene:Mm.319530 STRING:Q9CQF8
            PhosphoSite:Q9CQF8 PaxDb:Q9CQF8 PRIDE:Q9CQF8
            Ensembl:ENSMUST00000022538 GeneID:67840 KEGG:mmu:67840
            UCSC:uc007udq.1 InParanoid:Q9CQF8 ChiTaRS:MRP63 NextBio:325673
            Bgee:Q9CQF8 CleanEx:MM_MRP63 Genevestigator:Q9CQF8
            GermOnline:ENSMUSG00000021967 Uniprot:Q9CQF8
        Length = 102

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 30/97 (30%), Positives = 42/97 (43%)

Query:     1 MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRXXXXXXXXXXXXRNMFLLRHPYLTEE 60
             M LT +LLRG  + P G  + GK+R    V+                N + L  PY+T E
Sbjct:     1 MFLTAVLLRG--RIP-GRQWIGKHRRPRTVSFQAKESMIRRLEVEAENHYWLSMPYMTAE 57

Query:    61 EELVHLKDLDRNENFRRERRALKLQKFIKHTKLTDHL 97
             +E  H  +  R + F   + A    KF KH  + D L
Sbjct:    58 QECGHAAER-RAQAFEAIKAAAT-SKFPKHRYIADQL 92


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.143   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      105        93   0.00091  102 3  11 22  0.44    29
                                                     29  0.41    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  480 (51 KB)
  Total size of DFA:  94 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:02
  No. of threads or processors used:  24
  Search cpu time:  11.55u 0.07s 11.62t   Elapsed:  00:00:02
  Total cpu time:  11.55u 0.07s 11.62t   Elapsed:  00:00:04
  Start:  Thu Aug 15 12:21:25 2013   End:  Thu Aug 15 12:21:29 2013

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