BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1834
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CWB|G Chain G, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|T Chain T, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|G Chain G, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|T Chain T, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|G Chain G, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|T Chain T, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|G Chain G, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|T Chain T, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|G Chain G, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|T Chain T, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|G Chain G, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|T Chain T, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|G Chain G, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|T Chain T, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|G Chain G, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|T Chain T, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|G Chain G, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|T Chain T, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|G Chain G, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|T Chain T, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|G Chain G, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|T Chain T, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|G Chain G, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|T Chain T, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|G Chain G, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|T Chain T, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 81
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 23 FGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQT 82
FGNL +R+I+ + +S FEQRA + + L N RR + + P FL Y++ +
Sbjct: 4 FGNLA-RVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWG 62
Query: 83 NDYYAQLNRKNPKDYEHE 100
+ +L RKNP DYE++
Sbjct: 63 TQEFERLKRKNPADYEND 80
>pdb|1BGY|G Chain G, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|S Chain S, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|G Chain G, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|G Chain G, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|G Chain G, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|G Chain G, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|G Chain G, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|G Chain G, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|G Chain G, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|G Chain G, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|T Chain T, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|G Chain G, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|T Chain T, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1SQB|G Chain G, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|2A06|G Chain G, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|T Chain T, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|G Chain G, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|G Chain G, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQP|G Chain G, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
pdb|1SQQ|G Chain G, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|G Chain G, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|G Chain G, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|GG Chain g, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 81
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 23 FGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQT 82
FG+L +R+++ + +S FEQRAF + G+ N LRR R P F+ Y++ T
Sbjct: 4 FGHLT-RVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYTWG 62
Query: 83 NDYYAQLNRKNPKDYEHE 100
+ + RKNP YE++
Sbjct: 63 TQEFEKSKRKNPAAYEND 80
>pdb|1BCC|G Chain G, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|G Chain G, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|G Chain G, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 81
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 23 FGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQT 82
FG+L +R+++ + +S FEQR F + G+ N RR+ R P FL Y++ T
Sbjct: 4 FGHLT-RVRHLITYSLSPFEQRPFPHYFSKGVPNVWRRLRACILRVAPPFLAFYLLYTWG 62
Query: 83 NDYYAQLNRKNPKDY 97
+ + RKNP Y
Sbjct: 63 TQEFEKSKRKNPAAY 77
>pdb|1QCR|G Chain G, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 70
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 23 FGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIIT 80
FG+L +R+++ + +S FEQRAF + G+ N LRR R P F+ Y++ T
Sbjct: 4 FGHLT-RVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYT 60
>pdb|3S2U|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa
Murg:udp-Glcnac Substrate Complex
Length = 365
Score = 27.3 bits (59), Expect = 1.9, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 42 EQRAFAGLLNPGLQNTLRRITESAPRTVP 70
EQ A AG N L RR+ E+ P T P
Sbjct: 122 EQNAVAGTANRSLAPIARRVCEAFPDTFP 150
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 52 PGLQNTLRRITESAPRTVPYFLITY 76
PG++N R T AP PY L+ Y
Sbjct: 299 PGVENYARYFTGKAPGEPPYTLLDY 323
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 52 PGLQNTLRRITESAPRTVPYFLITY 76
PG++N R T AP PY L+ Y
Sbjct: 298 PGVENYARYFTGKAPGEPPYTLLDY 322
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,031,686
Number of Sequences: 62578
Number of extensions: 100775
Number of successful extensions: 165
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 7
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)