BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1834
(101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CQ69|QCR8_MOUSE Cytochrome b-c1 complex subunit 8 OS=Mus musculus GN=Uqcrq PE=1
SV=3
Length = 82
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 18 MGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYV 77
MG FGNL IR+++ + +S FEQRAF + G+ N LRR E R P F++ Y+
Sbjct: 1 MGRE-FGNLA-RIRHVISYSLSPFEQRAFPSYFSKGIPNVLRRTRERILRVAPPFVVVYL 58
Query: 78 IITQTNDYYAQLNRKNPKDYEHE 100
I T N + Q RKNP YE++
Sbjct: 59 IYTWGNQEFEQSKRKNPAMYEND 81
>sp|Q7TQ16|QCR8_RAT Cytochrome b-c1 complex subunit 8 OS=Rattus norvegicus GN=Uqcrq
PE=3 SV=1
Length = 82
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 18 MGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYV 77
MG FGNL IR+++ + +S FEQRAF + G+ N LRR E R P F++ Y+
Sbjct: 1 MGRE-FGNLT-RIRHVISYSLSPFEQRAFPHYFSKGIPNVLRRTRERILRVAPPFVLFYL 58
Query: 78 IITQTNDYYAQLNRKNPKDYEHE 100
I T N +AQ RKNP YE++
Sbjct: 59 IYTWGNQEFAQSKRKNPAKYEND 81
>sp|O14949|QCR8_HUMAN Cytochrome b-c1 complex subunit 8 OS=Homo sapiens GN=UQCRQ PE=1
SV=4
Length = 82
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 18 MGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYV 77
MG FGNL +R+++ + +S FEQRA+ + G+ N LRRI ES R VP F++ Y+
Sbjct: 1 MGRE-FGNLT-RMRHVISYSLSPFEQRAYPHVFTKGIPNVLRRIRESFFRVVPQFVVFYL 58
Query: 78 IITQTNDYYAQLNRKNPKDYEHE 100
I T + + + RKNP YE++
Sbjct: 59 IYTWGTEEFERSKRKNPAAYEND 81
>sp|Q5R597|QCR8_PONAB Cytochrome b-c1 complex subunit 8 OS=Pongo abelii GN=UQCRQ PE=3
SV=3
Length = 82
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 23 FGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQT 82
FGNL +R+++ + +S FEQRA + G+ N LRR ES R P F++ Y+I T
Sbjct: 5 FGNLT-RMRHVISYSLSPFEQRAHPHVFTKGIPNVLRRFRESFFRVAPQFVVFYLIYTWG 63
Query: 83 NDYYAQLNRKNPKDYEHE 100
+ + + RKNP YE++
Sbjct: 64 TEEFERSKRKNPAAYEND 81
>sp|Q2L897|QCR8_AILME Cytochrome b-c1 complex subunit 8 OS=Ailuropoda melanoleuca
GN=UQCRQ PE=3 SV=3
Length = 82
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 23 FGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQT 82
FGNL +R+++ + +S FEQRAF + G+ N LRR+ R VP F+ Y++ T
Sbjct: 5 FGNLT-RMRHVITYSLSPFEQRAFPHYFSKGIPNVLRRMRACVLRVVPPFVAFYLVYTWG 63
Query: 83 NDYYAQLNRKNPKDYEHE 100
+ RKNP YE++
Sbjct: 64 TQEFENSKRKNPAAYEND 81
>sp|P13271|QCR8_BOVIN Cytochrome b-c1 complex subunit 8 OS=Bos taurus GN=UQCRQ PE=1 SV=3
Length = 82
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 23 FGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQT 82
FG+L +R+++ + +S FEQRAF + G+ N LRR R P F+ Y++ T
Sbjct: 5 FGHLT-RVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYTWG 63
Query: 83 NDYYAQLNRKNPKDYEHE 100
+ + RKNP YE++
Sbjct: 64 TQEFEKSKRKNPAAYEND 81
>sp|P50523|QCR8_SCHPO Cytochrome b-c1 complex subunit 8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=qcr8 PE=3 SV=1
Length = 92
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 23 FGNLG-PHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRI-TESAPRTVPYFLITYVIIT 80
+G+LG P + I+ + +S F+QR AG QN RR+ TE +P F I Y I
Sbjct: 14 WGHLGGPKQKGIITYSLSPFQQRPMAGFFKTSTQNMFRRVMTEGLYVAIP-FGIAYYIYC 72
Query: 81 QTNDYYAQLNRKNPK 95
+ LN K+ +
Sbjct: 73 WGKERNEFLNSKHGR 87
>sp|P48503|QCR8_NEUCR Cytochrome b-c1 complex subunit 8 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=qcr-8 PE=1 SV=1
Length = 107
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 2 MMTTAILIPIGKESSTMGHHGFGNLGP-HIRNIVYHRISMFEQRAFAGLLNPGLQNTLRR 60
M+ PIGK + +G G+GN G R I+ + IS Q AG + + NT RR
Sbjct: 7 MLGGGGGAPIGKHNHYLG--GWGNFGGMKQRGIISYGISPNRQNPLAGTAHDAVFNTFRR 64
Query: 61 ITESAPRTVPYFLITYVIITQTNDYYAQLNRK 92
++ P + Y I+ + LN K
Sbjct: 65 VSSQFLYWAPSLVAGYYIMNWAIERNHYLNSK 96
>sp|B3DVG9|OBG_METI4 GTPase obg OS=Methylacidiphilum infernorum (isolate V4) GN=obg PE=3
SV=2
Length = 365
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 45 AFAGLLNPGLQNTLRRITESAPRTVPYFLIT---YVIITQTNDYY 86
F GL N G LR++T++ P+T PY T +V I +D Y
Sbjct: 181 GFVGLPNSGKSTLLRQVTDAKPKTAPYPFTTLKPHVGIVNFDDGY 225
>sp|Q54V76|QCR8_DICDI Probable cytochrome b-c1 complex subunit 8 OS=Dictyostelium
discoideum GN=DDB_G0280569 PE=3 SV=1
Length = 73
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 36 HRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYY 86
+ +S F+Q+ F + + R + ++ +VPYF Y+ + N+ Y
Sbjct: 14 YSVSPFQQKLFVNYFKNAIPHLRRGVKDNFFCSVPYFAALYITVNWANETY 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,801,810
Number of Sequences: 539616
Number of extensions: 1231953
Number of successful extensions: 2332
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2322
Number of HSP's gapped (non-prelim): 11
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)