Query psy1834
Match_columns 101
No_of_seqs 103 out of 187
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 17:34:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tgu_G UQCRQ, mitochondrial ub 100.0 9E-49 3.1E-53 260.4 3.5 81 19-101 1-81 (81)
2 1pp9_G Ubiquinol-cytochrome C 100.0 3.3E-47 1.1E-51 252.8 3.2 81 19-101 1-81 (81)
3 3cx5_H Cytochrome B-C1 complex 100.0 4.5E-43 1.5E-47 238.2 2.3 83 12-96 3-86 (93)
4 3pim_A Peptide methionine sulf 40.0 23 0.00078 25.9 3.1 71 18-99 109-179 (187)
5 1vqs_A Hypothetical protein AG 22.2 17 0.00057 23.7 -0.2 55 31-85 15-73 (116)
6 1vqy_A Hypothetical protein AG 18.7 28 0.00095 22.6 0.3 55 30-85 14-73 (116)
7 4dhk_A DCTP deaminase, deoxycy 17.4 46 0.0016 23.9 1.2 11 31-41 36-46 (191)
8 3tha_A Tryptophan synthase alp 15.9 44 0.0015 25.1 0.8 42 51-96 75-118 (252)
9 2qt7_A Receptor-type tyrosine- 14.1 71 0.0024 20.8 1.4 24 29-52 42-65 (91)
10 1nwa_A Peptide methionine sulf 12.8 34 0.0012 25.3 -0.6 72 17-97 102-173 (203)
No 1
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=100.00 E-value=9e-49 Score=260.45 Aligned_cols=81 Identities=36% Similarity=0.635 Sum_probs=79.0
Q ss_pred CCCCCCCCCceeeeEEEEEcCccchhhhccccchhhhhhHhhhhcccCeeehhhheehhhhhhcHHHHHHhhCCCCCCcc
Q psy1834 19 GHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYAQLNRKNPKDYE 98 (101)
Q Consensus 19 G~~~fG~l~~k~rgivtYsLSP~eQra~aG~~~~~i~N~~RR~~~q~~~~~ppfi~~Y~iy~Wa~~~~~~~~rK~p~dye 98 (101)
|+ |||||+ |||||+||+|||||||||+|+|++||||++||+++|+|||+|||+++|+||+||+++||+++||||+|||
T Consensus 1 g~-~FG~L~-k~kgIitYsLSP~~Qr~~ag~~~~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKnpady~ 78 (81)
T 3tgu_G 1 GI-HFGNLA-RVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKNPADYE 78 (81)
T ss_dssp -C-CTTTSC-CCEEEEEEEECTTTBCSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCGGGSS
T ss_pred CC-cccccc-cccceEEEEeCcccccccccchhhhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCCHHHhc
Confidence 44 999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy1834 99 HEV 101 (101)
Q Consensus 99 nd~ 101 (101)
||+
T Consensus 79 nd~ 81 (81)
T 3tgu_G 79 NDQ 81 (81)
T ss_dssp TTC
T ss_pred cCC
Confidence 997
No 2
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=100.00 E-value=3.3e-47 Score=252.78 Aligned_cols=81 Identities=35% Similarity=0.621 Sum_probs=72.2
Q ss_pred CCCCCCCCCceeeeEEEEEcCccchhhhccccchhhhhhHhhhhcccCeeehhhheehhhhhhcHHHHHHhhCCCCCCcc
Q psy1834 19 GHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYAQLNRKNPKDYE 98 (101)
Q Consensus 19 G~~~fG~l~~k~rgivtYsLSP~eQra~aG~~~~~i~N~~RR~~~q~~~~~ppfi~~Y~iy~Wa~~~~~~~~rK~p~dye 98 (101)
|+ |||||+ ||||||||||||||||||+|+|++||||++||+++|+++++|||+++|+||+||+++||+++||||+|||
T Consensus 1 g~-~fG~l~-k~~givtYslSP~~Qr~~~g~~~~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKnp~d~~ 78 (81)
T 1pp9_G 1 GR-QFGHLT-RVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNPAAYE 78 (81)
T ss_dssp -C-CTTSSC-CCEEEEEEEECTTTBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC----
T ss_pred CC-Cccccc-cccceEEEEeChhhcccccchHhhhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCCHHHhc
Confidence 44 899999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy1834 99 HEV 101 (101)
Q Consensus 99 nd~ 101 (101)
||+
T Consensus 79 nd~ 81 (81)
T 1pp9_G 79 NDR 81 (81)
T ss_dssp ---
T ss_pred cCC
Confidence 996
No 3
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=100.00 E-value=4.5e-43 Score=238.21 Aligned_cols=83 Identities=20% Similarity=0.346 Sum_probs=80.8
Q ss_pred CCCCcccCCCCCCCCC-ceeeeEEEEEcCccchhhhccccchhhhhhHhhhhcccCeeehhhheehhhhhhcHHHHHHhh
Q psy1834 12 GKESSTMGHHGFGNLG-PHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYAQLN 90 (101)
Q Consensus 12 ~k~~~~mG~~~fG~l~-~k~rgivtYsLSP~eQra~aG~~~~~i~N~~RR~~~q~~~~~ppfi~~Y~iy~Wa~~~~~~~~ 90 (101)
+|.++|||| ||||+ |||||||||||||||||||+|+|+++|||++||+++|+++++||||++|+||+||+++||++|
T Consensus 3 ~~~~~y~g~--fG~l~~~k~~givtYsLSP~~Qr~~~G~~~~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l~ 80 (93)
T 3cx5_H 3 PSGKTYMGW--WGHMGGPKQKGITSYAVSPYAQKPLQGIFHNAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLY 80 (93)
T ss_dssp CCCCCSCCB--TTBCSCCCCCSEEEEEECGGGBCCSCCSTTTTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcEecc--CccCCCccccceEEEEeCccccccccchHhhcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHHh
Confidence 578999999 99999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy1834 91 RKNPKD 96 (101)
Q Consensus 91 rK~p~d 96 (101)
||+|..
T Consensus 81 ~KaG~~ 86 (93)
T 3cx5_H 81 SKAGRE 86 (93)
T ss_dssp SGGGHH
T ss_pred cccchh
Confidence 999864
No 4
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B
Probab=40.01 E-value=23 Score=25.90 Aligned_cols=71 Identities=13% Similarity=0.056 Sum_probs=44.9
Q ss_pred cCCCCCCCCCceeeeEEEEEcCccchhhhccccchhhhhhHhhhhcccCeeehhhheehhhhhhcHHHHHHhhCCCCCCc
Q psy1834 18 MGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYAQLNRKNPKDY 97 (101)
Q Consensus 18 mG~~~fG~l~~k~rgivtYsLSP~eQra~aG~~~~~i~N~~RR~~~q~~~~~ppfi~~Y~iy~Wa~~~~~~~~rK~p~dy 97 (101)
.+. +.+.| .|..-.-|..++ +|+..+-...+.+-. ++...+..-+-|+--+| -|+++|.....|||..|
T Consensus 109 nrQ--G~D~G-~QYRS~Ify~~~-~Q~~~A~~~~~~l~~---~~~~~IvTeI~p~~~Fy----~AE~yHQ~Yl~knP~~Y 177 (187)
T 3pim_A 109 NSQ--GPDKG-TQYRSGLFAHSD-ADLKELAKIKEEWQP---KWGNKIATVIEPIKNFY----DAEEYHQLYLDKNPQGY 177 (187)
T ss_dssp CC-------C-GGGCCEEEESSH-HHHHHHHHHHHHHGG---GGTTCBCCEEEEEEEEE----EHHHHHHHHCTTCTTCT
T ss_pred CCC--CCCcC-cccceeeEeCCH-HHHHHHHHHHHHHHH---HhCCCcEEEEeeCCCee----ecHHHHHHHHHHCCCCC
Confidence 455 78899 777777777777 666666544444433 33455555566665444 68999999999999988
Q ss_pred cc
Q psy1834 98 EH 99 (101)
Q Consensus 98 en 99 (101)
..
T Consensus 178 cc 179 (187)
T 3pim_A 178 AC 179 (187)
T ss_dssp TC
T ss_pred CC
Confidence 64
No 5
>1vqs_A Hypothetical protein AGR_L_1239; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: MSE SO4; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.4.13 PDB: 2ap6_A
Probab=22.16 E-value=17 Score=23.69 Aligned_cols=55 Identities=11% Similarity=-0.049 Sum_probs=37.3
Q ss_pred eeEEEEEcCccchhhhccccch-hhhhhHhhhhcccCeeehhhh---eehhhhhhcHHH
Q psy1834 31 RNIVYHRISMFEQRAFAGLLNP-GLQNTLRRITESAPRTVPYFL---ITYVIITQTNDY 85 (101)
Q Consensus 31 rgivtYsLSP~eQra~aG~~~~-~i~N~~RR~~~q~~~~~ppfi---~~Y~iy~Wa~~~ 85 (101)
.-+.||+|-|-.-..|...+.+ +++-.-|.-.+.+-++.+-.. -.+.|+.+..-+
T Consensus 15 yElR~Y~i~Pg~~~~~~~~~~~~~i~~~~~~g~~~vG~~~~~~G~ln~v~~Lw~y~sl~ 73 (116)
T 1vqs_A 15 YEIRTYRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFSEIGPINEIVHIWAFSSLD 73 (116)
T ss_dssp EEEEEEEESTTCHHHHHHHHHHTHHHHHHHHHCCEEEEEEEEESSSSEEEEEEEESCHH
T ss_pred EEEEEEEEcCCCHHHHHHHHHHhhhHHHHHhCCceEEEEEcccCCCcEEEEEEecCCHH
Confidence 4588999999999999988888 776555443666667765332 245566655443
No 6
>1vqy_A Hypothetical protein AGR_PAT_315; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.40A {Agrobacterium tumefaciens str} SCOP: d.58.4.13
Probab=18.69 E-value=28 Score=22.59 Aligned_cols=55 Identities=13% Similarity=-0.050 Sum_probs=37.9
Q ss_pred eeeEEEEEcCccchhhhccccch-hhhhhHhhh-hcccCeeehhhh---eehhhhhhcHHH
Q psy1834 30 IRNIVYHRISMFEQRAFAGLLNP-GLQNTLRRI-TESAPRTVPYFL---ITYVIITQTNDY 85 (101)
Q Consensus 30 ~rgivtYsLSP~eQra~aG~~~~-~i~N~~RR~-~~q~~~~~ppfi---~~Y~iy~Wa~~~ 85 (101)
+.-+.||+|-|-.-..|...+.+ +++ ..+|. .+.+-|+.+-.. -.+.+|.+..-+
T Consensus 14 ~yElRtY~i~Pg~~~~f~~~~~~~~i~-~~~k~g~~~vG~~~~~~G~ln~v~~Lw~y~sl~ 73 (116)
T 1vqy_A 14 IVEERIYRIRGGKMQEYLKLVREEGIA-IQAPILGNLIGYFVTDIGPLSQVIHMWGYASLD 73 (116)
T ss_dssp EEEEEEEEECTTCHHHHHHHHHHTHHH-HHHHHHCCEEEEEEEEESBSSEEEEEEEESCHH
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHhhhH-HHHHhCCceEEEEEcccCCCcEEEEEEecCCHH
Confidence 46688999999999999988888 786 44455 566667655332 245566665443
No 7
>4dhk_A DCTP deaminase, deoxycytidine triphosphate deaminase; hydrolase; 2.05A {Burkholderia thailandensis}
Probab=17.41 E-value=46 Score=23.91 Aligned_cols=11 Identities=36% Similarity=0.383 Sum_probs=9.5
Q ss_pred eeEEEEEcCcc
Q psy1834 31 RNIVYHRISMF 41 (101)
Q Consensus 31 rgivtYsLSP~ 41 (101)
.+|++|.||||
T Consensus 36 ~~~~s~g~ss~ 46 (191)
T 4dhk_A 36 RRIVSYGTSSY 46 (191)
T ss_dssp CEEEEEEEETT
T ss_pred cceeeccCCCc
Confidence 58999999984
No 8
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=15.90 E-value=44 Score=25.06 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=30.8
Q ss_pred chhhhhhHhhhhcccCeeehhhheehh--hhhhcHHHHHHhhCCCCCC
Q psy1834 51 NPGLQNTLRRITESAPRTVPYFLITYV--IITQTNDYYAQLNRKNPKD 96 (101)
Q Consensus 51 ~~~i~N~~RR~~~q~~~~~ppfi~~Y~--iy~Wa~~~~~~~~rK~p~d 96 (101)
-+.++..++++|++ +|-.+++|+ ++.++.+++.....++|.|
T Consensus 75 ~~~~~~~~~~~r~~----~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvd 118 (252)
T 3tha_A 75 IHSVFELLARIKTK----KALVFMVYYNLIFSYGLEKFVKKAKSLGIC 118 (252)
T ss_dssp HHHHHHHHHHCCCS----SEEEEECCHHHHHHHCHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHhcC----CCEEEEeccCHHHHhhHHHHHHHHHHcCCC
Confidence 36789999999887 455566775 6788888887777666643
No 9
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens} PDB: 3n01_A 3np5_A 3ng8_A 3n4w_A
Probab=14.06 E-value=71 Score=20.85 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=17.4
Q ss_pred eeeeEEEEEcCccchhhhccccch
Q psy1834 29 HIRNIVYHRISMFEQRAFAGLLNP 52 (101)
Q Consensus 29 k~rgivtYsLSP~eQra~aG~~~~ 52 (101)
=.+..+||.++|+.|+--+--.-+
T Consensus 42 V~g~aVTFrV~~N~~n~taadVa~ 65 (91)
T 2qt7_A 42 VVGPALTFRIRHNEQNLSLADVTQ 65 (91)
T ss_dssp EETTEEEEEECCCTTCCCHHHHHH
T ss_pred eecceEEEEeccCcccCCHHHHHH
Confidence 345689999999999876543333
No 10
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1
Probab=12.78 E-value=34 Score=25.31 Aligned_cols=72 Identities=8% Similarity=-0.034 Sum_probs=46.3
Q ss_pred ccCCCCCCCCCceeeeEEEEEcCccchhhhccccchhhhhhHhhhhcccCeeehhhheehhhhhhcHHHHHHhhCCCCCC
Q psy1834 17 TMGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYAQLNRKNPKD 96 (101)
Q Consensus 17 ~mG~~~fG~l~~k~rgivtYsLSP~eQra~aG~~~~~i~N~~RR~~~q~~~~~ppfi~~Y~iy~Wa~~~~~~~~rK~p~d 96 (101)
.++. +.+.| .|..-.-|..++ +|+..+-...+.+-.. .++.+.+..-+-|+--+| -|+++|.....|||..
T Consensus 102 ~nrQ--G~D~G-tQYRSaIfy~~~-eQ~~~A~~~~~~lq~~-g~~~~~IvTeI~p~~~Fy----~AE~YHQ~Yl~knP~~ 172 (203)
T 1nwa_A 102 KDRQ--GNDRG-TSYRSAIFYFDE-QQKRIALDTIADVEAS-GLWPGKVVTEVSPAGDFW----EAEPEHQDYLQRYPNG 172 (203)
T ss_dssp TTEE--TTEES-GGGCEEEEESSH-HHHHHHHHHHHHHHHH-CCSSSCCCCEEEECCCEE----ECCGGGTTHHHHSTTS
T ss_pred cCCC--CCCCC-ccccccccCCCH-HHHHHHHHHHHHHHHh-cCcCCCeEEEEecCCCEE----EChHHHHHHHHhCCCC
Confidence 3455 78899 888878888887 4555555343333331 123344555556655444 6899998888999998
Q ss_pred c
Q psy1834 97 Y 97 (101)
Q Consensus 97 y 97 (101)
|
T Consensus 173 Y 173 (203)
T 1nwa_A 173 Y 173 (203)
T ss_dssp C
T ss_pred C
Confidence 7
Done!