RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1834
         (101 letters)



>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of
          cytochrome bc1 complex (Ubiquinol-cytochrome c
          reductase) {Cow (Bos taurus) [TaxId: 9913]}
          Length = 75

 Score = 82.0 bits (203), Expect = 5e-23
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 21 HGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIIT 80
            FG+L   +R+++ + +S FEQRAF    + G+ N LRR      R  P F+  Y++ T
Sbjct: 2  RQFGHLTR-VRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYT 60

Query: 81 QTNDYYAQLNRKNP 94
               + +  RKNP
Sbjct: 61 WGTQEFEKSKRKNP 74


>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of
          cytochrome bc1 complex (Ubiquinol-cytochrome c
          reductase) {Baker's yeast (Saccharomyces cerevisiae)
          [TaxId: 4932]}
          Length = 93

 Score = 75.5 bits (186), Expect = 4e-20
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 22 GFGNLG-PHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIIT 80
           +G++G P  + I  + +S + Q+   G+ +  + N+ RR        +    I +    
Sbjct: 11 WWGHMGGPKQKGITSYAVSPYAQKPLQGIFHNAVFNSFRRFKSQFLYVLIPAGIYWYWWK 70

Query: 81 QTNDYYAQLNRK 92
            N+Y   L  K
Sbjct: 71 NGNEYNEFLYSK 82


>d1j2ga2 d.96.1.4 (A:159-312) Urate oxidase (uricase) {Bacillus sp.,
           strain TB-90 [TaxId: 1409]}
          Length = 154

 Score = 28.6 bits (64), Expect = 0.073
 Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 3/71 (4%)

Query: 31  RNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYAQLN 90
             +   +I       F       +Q+ +  I        P   +  V     N  + ++ 
Sbjct: 68  NYVAAEQIRDIATSVFHETETLSIQHLIYLIGRRILERFP--QLQEVYFESQNHTWDKIV 125

Query: 91  RKNPKDYEHEV 101
            + P+  E +V
Sbjct: 126 EEIPES-EGKV 135


>d2ibaa2 d.96.1.4 (A:137-295) Urate oxidase (uricase) {Aspergillus
           flavus [TaxId: 5059]}
          Length = 159

 Score = 24.0 bits (52), Expect = 3.2
 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 43  QRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYY 86
            + FA   +  +Q T+ ++ E         LI  V  +  N +Y
Sbjct: 80  LKTFAEDNSASVQATMYKMAEQILARQQ--LIETVEYSLPNKHY 121


>d1k1xa1 a.8.3.2 (A:311-384) 4-alpha-glucanotransferase, domain 2
          {Archaeon Thermococcus litoralis [TaxId: 2265]}
          Length = 74

 Score = 23.2 bits (50), Expect = 3.8
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)

Query: 21 HG-FGNL-GPHIRNIVYHRI 38
          HG FG +  PH+R  V+  I
Sbjct: 48 HGVFGGIYLPHLRRTVWENI 67


>d1ihpa_ c.60.1.2 (A:) Phytase
           (myo-inositol-hexakisphosphate-3-phosphohydrolase)
           {Aspergillus ficuum [TaxId: 5058]}
          Length = 438

 Score = 24.0 bits (51), Expect = 4.2
 Identities = 10/62 (16%), Positives = 23/62 (37%)

Query: 11  IGKESSTMGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVP 70
            G +          N+ P IR+    R+    ++   G  +  L++   +  +S+P+   
Sbjct: 110 SGIKFYQRYESLTRNIVPFIRSSGSSRVIASGKKFIEGFQSTKLKDPRAQPGQSSPKIDV 169

Query: 71  YF 72
             
Sbjct: 170 VI 171


>d2yzca2 d.96.1.4 (A:142-297) Urate oxidase (uricase) {Arthrobacter
           globiformis [TaxId: 1665]}
          Length = 156

 Score = 23.6 bits (51), Expect = 4.6
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 43  QRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYY 86
            +AFA   +  LQ T+  +  +   T P   I  + ++  N ++
Sbjct: 70  LKAFAETHSLALQQTMYEMGRAVIETHP--EIDEIKMSLPNKHH 111


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 376,808
Number of extensions: 14781
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 10
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.0 bits)