BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1836
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ONI|A Chain A, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|B Chain B, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|C Chain C, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|D Chain D, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|E Chain E, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|F Chain F, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|G Chain G, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|H Chain H, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|I Chain I, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
Length = 138
Score = 112 bits (280), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 69/94 (73%), Gaps = 1/94 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QAV D T+YISG +G+D SSG++ G V +AKQAL NMG ILK AG + +VVKTT+L
Sbjct: 24 QAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVL 83
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
L DINDF TVN +Y Q+FK +PAR+ +QV LP
Sbjct: 84 LADINDFNTVNEIYKQYFKSNFPARAAYQVAALP 117
>pdb|1NQ3|A Chain A, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|B Chain B, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|C Chain C, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|D Chain D, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|E Chain E, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|F Chain F, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
Length = 136
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 70/94 (74%), Gaps = 1/94 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QAV D T+YISG LG+D +SG++ G V +AKQALTN+G ILK AG + +VVK T+L
Sbjct: 22 QAVLVDRTIYISGQLGMDPASGQLVPGGVVEEAKQALTNIGEILKAAGCDFTNVVKATVL 81
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
L DINDF+ VN+VY Q+F+ +PAR+ +QV LP
Sbjct: 82 LADINDFSAVNDVYKQYFQSSFPARAAYQVAALP 115
>pdb|1QAH|A Chain A, Crystal Structure Of Perchloric Acid Soluble Protein-A
Translational Inhibitor
pdb|1QAH|B Chain B, Crystal Structure Of Perchloric Acid Soluble Protein-A
Translational Inhibitor
Length = 136
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 67/94 (71%), Gaps = 1/94 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QAV D T+Y+SG +G+D SSG++ G V +AKQAL N+G ILK AG + +VVKTT+L
Sbjct: 22 QAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEILKAAGCDFTNVVKTTVL 81
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
L DINDF TVN +Y +F+ PAR+ +QV LP
Sbjct: 82 LADINDFGTVNEIYKTYFQGNLPARAAYQVAALP 115
>pdb|1XRG|A Chain A, Conserved Hypothetical Protein From Clostridium
Thermocellum Cth-2968
pdb|1XRG|B Chain B, Conserved Hypothetical Protein From Clostridium
Thermocellum Cth-2968
pdb|1XRG|C Chain C, Conserved Hypothetical Protein From Clostridium
Thermocellum Cth-2968
Length = 156
Score = 88.6 bits (218), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QA+ + +Y SG + I+ +G++ +G +E QAKQ L N+ ++L+ AG S VVKTT+
Sbjct: 50 QAIVTGSFVYTSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNKVVKTTVF 109
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
+ D + FA VN VY ++F PYPARS +V KLP
Sbjct: 110 IKDXDSFAKVNEVYAKYFSEPYPARSCVEVSKLP 143
>pdb|3K0T|A Chain A, Crystal Structure Of Pspto -Psp Protein In Complex With
D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000
pdb|3K0T|B Chain B, Crystal Structure Of Pspto -Psp Protein In Complex With
D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000
pdb|3K0T|C Chain C, Crystal Structure Of Pspto -Psp Protein In Complex With
D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000
Length = 143
Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 57/93 (61%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
QA++ NT+Y SG + +D S+ ++ EG+E Q Q N+ + + AGGS++ +VK I L
Sbjct: 37 QAIKAGNTVYXSGQIPLDPSTXELVEGIEAQITQVFENLKSVAQAAGGSFKDIVKLNIFL 96
Query: 80 NDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
D+ FA VN + G +F PYPAR+ V LP
Sbjct: 97 TDLGHFAKVNEIXGSYFSQPYPARAAIGVAALP 129
>pdb|2DYY|A Chain A, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|B Chain B, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|C Chain C, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|D Chain D, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|E Chain E, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|F Chain F, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|G Chain G, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|H Chain H, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|I Chain I, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|J Chain J, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|K Chain K, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|L Chain L, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
Length = 126
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QA++ N L+I+G + ID +G++ +G +++Q +Q L N+ IL+ AG S V+K T+
Sbjct: 19 QAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVY 78
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
L D+NDFA +N VY ++F PAR +V +LP
Sbjct: 79 LKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLP 112
>pdb|3L7Q|A Chain A, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|B Chain B, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|C Chain C, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|D Chain D, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|E Chain E, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|F Chain F, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|G Chain G, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|H Chain H, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|I Chain I, Crystal Structure Of Aldr From Streptococcus Mutans
Length = 125
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 26 NTLYISGVLGIDASSGK-MAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDIND 84
N L+ SG + + +G+ + +E Q +Q L N+ IL EAG ++HVVKTT L+DI+D
Sbjct: 24 NLLFASGQVPLSPETGQVIGTTIEEQTQQVLKNISAILTEAGTDFDHVVKTTCFLSDIDD 83
Query: 85 FATVNNVYGQFFKPPYPARSTFQVGKLP 112
F N VY FK +PARS +V +LP
Sbjct: 84 FVPFNEVYATAFKSDFPARSAVEVARLP 111
>pdb|1J7H|A Chain A, Solution Structure Of Hi0719, A Hypothetical Protein From
Haemophilus Influenzae
pdb|1J7H|B Chain B, Solution Structure Of Hi0719, A Hypothetical Protein From
Haemophilus Influenzae
pdb|1J7H|C Chain C, Solution Structure Of Hi0719, A Hypothetical Protein From
Haemophilus Influenzae
Length = 130
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
QAV N + SG + ++ ++G++ + QA+Q+L N+ I+++AG + +VKTT+ +
Sbjct: 20 QAVDLGNLVLTSGQIPVNPATGEVPADIVAQARQSLENVKAIIEKAGLTAADIVKTTVFV 79
Query: 80 NDINDFATVNNVYGQFFK----PPYPARSTFQVGKLP 112
D+NDFA VN Y +FFK P +PARS +V +LP
Sbjct: 80 KDLNDFAAVNAEYERFFKENNHPNFPARSCVEVARLP 116
>pdb|1QD9|A Chain A, Bacillus Subtilis Yabj
pdb|1QD9|B Chain B, Bacillus Subtilis Yabj
pdb|1QD9|C Chain C, Bacillus Subtilis Yabj
Length = 124
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
Q + +N Y SG + + SG+M G ++ Q Q +N+ +L+EAG S+E VVK T+
Sbjct: 18 QGIIVNNMFYSSGQIPL-TPSGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVF 76
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLP---LIDFCLVVL 121
+ D+ FA VN VYGQ+F PARS +V +LP L++ ++ L
Sbjct: 77 IADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVIAL 122
>pdb|2CWJ|A Chain A, Crystal Structure Of Ape1501, A Putative Endonuclease From
Aeropyrum Pernix
Length = 123
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QAV+ +++SG + I+ +G + EG + AK+AL N+ I++ AG S + +VK T+
Sbjct: 13 QAVESGCFMFVSGQIPINPETGALEEGGFKESAKRALDNLKAIVEGAGYSMDDIVKVTVY 72
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
+ DI+ F+ N VY ++F PYPAR+ V LPL
Sbjct: 73 ITDISRFSEFNEVYREYFNRPYPARAVVGVAALPL 107
>pdb|3R0P|A Chain A, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|B Chain B, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|C Chain C, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|D Chain D, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|E Chain E, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|F Chain F, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
Length = 127
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QAV+ +NT+Y+SG + +D + ++ EG QA Q N+ + + AGG +VK +
Sbjct: 21 QAVKVNNTVYLSGQIPLDPVTMQLVEGDFAVQAHQVFKNLRAVCEAAGGGLRDIVKLNVY 80
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
L D+ +F VN V GQ+F+ PYPAR+ + +LP
Sbjct: 81 LTDLANFPIVNEVMGQYFQAPYPARAAIGINQLP 114
>pdb|1X25|A Chain A, Crystal Structure Of A Member Of Yjgf Family From
Sulfolobus Tokodaii (st0811)
pdb|1X25|B Chain B, Crystal Structure Of A Member Of Yjgf Family From
Sulfolobus Tokodaii (st0811)
Length = 128
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QA++ NTLY+SG + ID + ++ +G ++ Q +Q L N+ I+K AG S V +
Sbjct: 21 QAIKVGNTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSLSDVAMAFVF 80
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLP---LIDFCLVVLGG 123
L D+N F N+VY ++FK PAR T +V +LP LI+ ++ G
Sbjct: 81 LKDMNMFNDFNSVYAEYFKDKPPARVTVEVSRLPKDALIEIAVICSKG 128
>pdb|2UYJ|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Ethylene
Glycol
pdb|2UYJ|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound Ethylene
Glycol
pdb|2UYJ|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound Ethylene
Glycol
pdb|2UYN|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound
2-Ketobutyrate
pdb|2UYN|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound
2-Ketobutyrate
pdb|2UYP|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Propionate
pdb|2UYP|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound Propionate
pdb|2UYP|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound Propionate
pdb|2UYK|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Serine
pdb|2UYK|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound Serine
pdb|2UYK|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound Serine
Length = 129
Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
Q V + ++ SG + + +G++ V++QA+ +L N+ I+ AG S ++K T+ +
Sbjct: 19 QGVDLGSMVFTSGQIPVXPQTGEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFI 78
Query: 80 NDINDFATVNNVYGQFF---KPPYPARSTFQVGKLP 112
D+NDFAT+N VY QFF + YP RS QV +LP
Sbjct: 79 TDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLP 114
>pdb|2UYN|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound
2-Ketobutyrate
Length = 129
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
Q V + ++ SG + + +G++ V++QA+ +L N+ I+ AG S ++K T+ +
Sbjct: 19 QGVDLGSMVFTSGQIPVXPQTGEIPADVQDQARLSLENVXAIVVAAGLSVGDIIKMTVFI 78
Query: 80 NDINDFATVNNVYGQFF---KPPYPARSTFQVGKLP 112
D+NDFAT+N VY QFF + YP RS QV +LP
Sbjct: 79 TDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLP 114
>pdb|3MQW|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|B Chain B, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|C Chain C, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|D Chain D, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|E Chain E, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|F Chain F, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
Length = 148
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QA+ + +Y SG +G+D +G A + +E Q+KQ +TN+ ++L+EAG S + VVKTT L
Sbjct: 42 QAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCL 101
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
L DI DF N +Y + F PAR+ F LP
Sbjct: 102 LADIKDFGVFNGIYAEAFGNHKPARACFAAAALP 135
>pdb|3M1X|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Rhomobohedral Form
Length = 148
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QA+ + +Y SG +G+D +G A + +E Q+KQ +TN+ ++L+EAG S + VVKTT L
Sbjct: 42 QAIICNGXVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCL 101
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
L DI DF N +Y + F PAR+ F LP
Sbjct: 102 LADIKDFGVFNGIYAEAFGNHKPARACFAAAALP 135
>pdb|3M4S|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|B Chain B, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|C Chain C, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|D Chain D, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|E Chain E, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|F Chain F, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
Length = 148
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QA+ + +Y SG +G+D +G A + +E Q+KQ +TN+ ++L+EAG S + VVKTT L
Sbjct: 42 QAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCL 101
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
L DI DF N +Y + F PAR+ F LP
Sbjct: 102 LADIKDFGVFNGIYAEAFGNHKPARACFAAAALP 135
>pdb|1QU9|A Chain A, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
pdb|1QU9|B Chain B, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
pdb|1QU9|C Chain C, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
Length = 128
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
Q V N + SG + ++ +G++ V QA+Q+L N+ I++ AG +VKTT+ +
Sbjct: 19 QGVDLGNMIITSGQIPVNPKTGEVPADVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFV 78
Query: 80 NDINDFATVNNVYGQFF---KPPYPARSTFQVGKLP 112
D+NDFATVN Y FF +PARS +V +LP
Sbjct: 79 KDLNDFATVNATYEAFFTEHNATFPARSXVEVARLP 114
>pdb|3VCZ|A Chain A, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
pdb|3VCZ|B Chain B, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
pdb|3VCZ|C Chain C, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
Length = 153
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 19 FQAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
Q V N + SG + ++ ++G++ + QA+Q+L N+ +++ +G + +VK T+
Sbjct: 42 IQGVDLGNMVLTSGQIPVNPATGEVPADIAAQARQSLDNVKAVVEASGLTVGDIVKMTVF 101
Query: 79 LNDINDFATVNNVYGQFFK----PPYPARSTFQVGKLP 112
+ D+NDF TVN VYG FF YPARS +V +LP
Sbjct: 102 VKDLNDFGTVNEVYGNFFDEHNVAHYPARSCVEVARLP 139
>pdb|2CSL|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|B Chain B, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|C Chain C, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|D Chain D, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|E Chain E, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|F Chain F, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|B Chain B, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|C Chain C, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|D Chain D, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|E Chain E, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|F Chain F, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CW4|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
Length = 124
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QAV+ +++SG + + A G + EG + Q ++ N+ +L+ AG VV+TT
Sbjct: 18 QAVKAGGFVFVSGQIPL-APDGSLVEGDIRVQTERVXENLKAVLEAAGSGLSRVVQTTCF 76
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
L D DF N VY ++F PPYPAR+T V LP
Sbjct: 77 LADXEDFPGFNEVYARYFTPPYPARATVAVKALP 110
>pdb|1JD1|A Chain A, Crystal Structure Of Yeo7_yeast
pdb|1JD1|B Chain B, Crystal Structure Of Yeo7_yeast
pdb|1JD1|C Chain C, Crystal Structure Of Yeo7_yeast
pdb|1JD1|D Chain D, Crystal Structure Of Yeo7_yeast
pdb|1JD1|E Chain E, Crystal Structure Of Yeo7_yeast
pdb|1JD1|F Chain F, Crystal Structure Of Yeo7_yeast
Length = 129
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 25 DNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDIN 83
+N +++SG + + K+ EG + ++A+Q + N+ ++L+ + S + VVK I L DIN
Sbjct: 27 NNLIFLSGQIPV-TPDNKLVEGSIADKAEQVIQNIKNVLEASNSSLDRVVKVNIFLADIN 85
Query: 84 DFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
FA N+VY ++F PARS V LPL
Sbjct: 86 HFAEFNSVYAKYFNTHKPARSCVAVAALPL 115
>pdb|2B33|A Chain A, Crystal Structure Of A Putative Endoribonuclease (tm0215)
From Thermotoga Maritima Msb8 At 2.30 A Resolution
pdb|2B33|B Chain B, Crystal Structure Of A Putative Endoribonuclease (tm0215)
From Thermotoga Maritima Msb8 At 2.30 A Resolution
Length = 140
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QAV N +++SG + ID +G++ +G +E + ++ L N+ IL+ G S + VVK T+
Sbjct: 31 QAVVVGNMMFVSGQIPIDPETGELVQGTIEEKTERVLENLKAILEAGGFSLKDVVKVTVF 90
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
++ F VN VY ++F PARS V +LP
Sbjct: 91 TTSMDYFQRVNEVYSRYFGDHRPARSFVAVAQLP 124
>pdb|3QUW|A Chain A, Crystal Structure Of Yeast Mmf1
Length = 153
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
QA++ +N +Y+SG + + + + +A+Q N+ +IL E+ S +++VK + L
Sbjct: 46 QAMKANNFVYVSGQIPYTPDNKPVQGSISEKAEQVFQNVKNILAESNSSLDNIVKVNVFL 105
Query: 80 NDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL-IDFCLVVLG 122
D+ +FA N+VY + F PARS V LPL +D + V+
Sbjct: 106 ADMKNFAEFNSVYAKHFHTHKPARSCVGVASLPLNVDLEMEVIA 149
>pdb|3V4D|A Chain A, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|C Chain C, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|F Chain F, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|B Chain B, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|D Chain D, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|E Chain E, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
Length = 134
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 25 DNTLYISGVLGIDASSGKM-AEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDIN 83
D +Y+SG L D + + A+ + Q + L + +++ AGG+ V +I + D
Sbjct: 31 DGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTXADVTFNSIFITDWK 90
Query: 84 DFATVNNVYGQFFKPPYPARSTFQVG 109
++A +N +Y +FF PAR Q G
Sbjct: 91 NYAAINEIYAEFFPGDKPARFCIQCG 116
>pdb|3K12|A Chain A, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|B Chain B, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|C Chain C, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|D Chain D, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|E Chain E, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|F Chain F, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
Length = 122
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 24 HDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDIN 83
H NT+YI G + D S +++Q +Q L N+ +L+ G V+ ILL
Sbjct: 17 HGNTVYIGGQVADDPSGD-----IQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHRE 71
Query: 84 DFATVNNVYGQFF 96
D+A +N V+ Q+F
Sbjct: 72 DYAGLNQVWDQWF 84
>pdb|3GTZ|A Chain A, Crystal Structure Of A Putative Translation Initiation
Inhibitor From Salmonella Typhimurium
pdb|3GTZ|B Chain B, Crystal Structure Of A Putative Translation Initiation
Inhibitor From Salmonella Typhimurium
pdb|3GTZ|C Chain C, Crystal Structure Of A Putative Translation Initiation
Inhibitor From Salmonella Typhimurium
Length = 124
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 22 VQHDNTLYISGV-LGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLN 80
V ++NTL+ +GV +DA + + Q L + +L++ G S ++ TI L+
Sbjct: 18 VIYNNTLWYTGVPENLDADAFE-------QTANTLAQIDAVLEKQGSSKSRILDATIFLS 70
Query: 81 DINDFATVNNVYGQFFKPPY-PARSTFQVG 109
D DFA +N + + + P R T Q G
Sbjct: 71 DKADFAAMNKAWDAWVVAGHAPVRCTVQAG 100
>pdb|3LME|A Chain A, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|B Chain B, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|C Chain C, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|D Chain D, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|E Chain E, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|F Chain F, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|G Chain G, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|H Chain H, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|I Chain I, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|J Chain J, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|K Chain K, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|L Chain L, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
Length = 138
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 28 LYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDF-A 86
++I G+ G D +GKM +G E + ++ NM + AG + V+ T+ + D+ +
Sbjct: 29 VFIGGMHGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRP 88
Query: 87 TVNNVYGQFF-KPPYPARSTFQVGKL 111
VN V + PYP R+ QV L
Sbjct: 89 VVNKVQKDIWGDGPYPPRTVLQVPAL 114
>pdb|3I7T|A Chain A, Crystal Structure Of Rv2704, A Member Of Highly Conserved
YjgfYER057CUK114 FAMILY, FROM MYCOBACTERIUM TUBERCULOSIS
Length = 149
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
AV + + I ++ + ++G + + Q + AL + L +AG + VV+T I +
Sbjct: 15 SAVGYSRAVRIGPLVVVAGTTGS-GDDIAAQTRDALRRIEIALGQAGATLADVVRTRIYV 73
Query: 80 NDINDFATVNNVYGQFFKPPYPARSTFQVGKL 111
DI+ + V V+ Q F P S +V L
Sbjct: 74 TDISRWREVGEVHAQAFGKIRPVTSMVEVTAL 105
>pdb|3KJJ|A Chain A, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|B Chain B, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|C Chain C, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|D Chain D, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|E Chain E, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|F Chain F, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|G Chain G, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|H Chain H, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|I Chain I, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|J Chain J, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|K Chain K, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|L Chain L, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJK|A Chain A, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|B Chain B, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|C Chain C, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|D Chain D, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|E Chain E, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|F Chain F, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|G Chain G, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|H Chain H, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|I Chain I, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|J Chain J, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|K Chain K, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|L Chain L, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
Length = 128
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 40 SGKMAEGVENQAKQA---LTNMGHILKEAGGSYEHVVKTTILLNDINDFATVNNVYGQFF 96
SG + E E A+Q L + L E G HV+ I L D D+A N V+ +
Sbjct: 33 SGXVPENGETAAEQTADVLAQIDRWLAECGSDKAHVLDAVIYLRDXGDYAEXNGVWDAWV 92
Query: 97 KP-PYPARSTFQV 108
PAR+ +
Sbjct: 93 AAGRTPARACVEA 105
>pdb|1XJV|A Chain A, Crystal Structure Of Human Pot1 Bound To Telomeric Single-
Stranded Dna (Ttagggttag)
Length = 294
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 87 TVNNVYG--QFFKPPYPARSTFQVGKLPLID------FCLVVLGGHETL 127
T+ NVYG +FFKPPY ++ T + ++D CL+ G +E L
Sbjct: 16 TIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNYEAL 64
>pdb|3KJO|A Chain A, Crystal Structure Of Hpot1v2-Dtrud(Agggttag)
pdb|3KJP|A Chain A, Crystal Structure Of Hpot1v2-Ggttagggttag
Length = 299
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 87 TVNNVYG--QFFKPPYPARSTFQVGKLPLID------FCLVVLGGHETL 127
T+ NVYG +FFKPPY ++ T + ++D CL+ G +E L
Sbjct: 21 TIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNYEAL 69
>pdb|4DK5|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A
Pyridyl- Triazine Inhibitor
Length = 959
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 98 PPYPARSTFQVGKLPLIDFCLVVLGGHETL 127
PP PA + + PL+D C V G HE L
Sbjct: 167 PPDPALDEVRKEEWPLVDDCTGVTGYHEQL 196
>pdb|3QAQ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Triazine-Benzimidazole 1
pdb|3QAR|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Triazine-Benzimidazole 32
pdb|3QJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Benzothiazole 1
pdb|3QK0|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Benzothiazole 82
pdb|3S2A|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With A
Quinoline Inhibitor
pdb|4FHJ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Imidazopyridine 2
pdb|4F1S|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A
Pyridyl- Triazine-Sulfonamide Inhibitor
pdb|4FLH|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Amg511
pdb|4FJY|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Quinoline-Indoline Inhibitor 24f
pdb|4FJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Pyrrolo-Pyridine Inhibitor 63
Length = 960
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 98 PPYPARSTFQVGKLPLIDFCLVVLGGHETL 127
PP PA + + PL+D C V G HE L
Sbjct: 168 PPDPALDEVRKEEWPLVDDCTGVTGYHEQL 197
>pdb|3DBS|A Chain A, Structure Of Pi3k Gamma In Complex With Gdc0941
pdb|3L13|A Chain A, Crystal Structures Of Pan-Pi3-Kinase And Dual
Pan-Pi3-KinaseMTOR Inhibitors
pdb|4AOF|A Chain A, Selective Small Molecule Inhibitor Discovered By
Chemoproteomic Assay Platform Reveals Regulation Of Th17
Cell Differentiation By Pi3kgamma
Length = 960
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 98 PPYPARSTFQVGKLPLIDFCLVVLGGHETL 127
PP PA + + PL+D C V G HE L
Sbjct: 168 PPDPALDEVRKEEWPLVDDCTGVTGYHEQL 197
>pdb|3CST|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In
Complex With Organoruthenium Inhibitor E5e2
pdb|3CSF|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In
Complex With Organoruthenium Inhibitor Dw2
pdb|3L16|A Chain A, Discovery Of (Thienopyrimidin-2-Yl)aminopyrimidines As
Potent, Selective, And Orally Available Pan-Pi3-Kinase
And Dual Pan-Pi3- KinaseMTOR INHIBITORS FOR THE
TREATMENT OF CANCER
pdb|3L17|A Chain A, Discovery Of (Thienopyrimidin-2-Yl)aminopyrimidines As
Potent, Selective, And Orally Available Pan-Pi3-Kinase
And Dual Pan-Pi3- KinaseMTOR INHIBITORS FOR THE
TREATMENT OF CANCER
pdb|3L08|A Chain A, Structure Of Pi3k Gamma With A Potent Inhibitor:
Gsk2126458
pdb|3OAW|A Chain A, 4-Methylpteridineones As Orally Active And Selective
Pi3kMTOR DUAL Inhibitors
pdb|3PRE|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3PRZ|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3PS6|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3R7Q|A Chain A, Structure-Based Design Of Thienobenzoxepin Inhibitors Of
Pi3- Kinase
pdb|3R7R|A Chain A, Structure-Based Design Of Thienobenzoxepin Inhibitors Of
Pi3-Kinase
pdb|3ZVV|A Chain A, Fragment Bound To Pi3kinase Gamma
pdb|3ZW3|A Chain A, Fragment Based Discovery Of A Novel And Selective Pi3
Kinase Inhibitor
pdb|3TL5|A Chain A, Discovery Of Gdc-0980: A Potent, Selective, And Orally
Available Class I Phosphatidylinositol 3-Kinase
(Pi3k)MAMMALIAN TARGET OF RAPAMYCIN (Mtor) Kinase
Inhibitor For The Treatment Of Cancer
pdb|3T8M|A Chain A, Rational Design Of Pi3k-Alpha Inhibitors That Exhibit
Selectivity Over The Pi3k-Beta Isoform
pdb|4GB9|A Chain A, Potent And Highly Selective Benzimidazole Inhibitors Of
Pi3k-Delta
pdb|4G11|A Chain A, X-Ray Structure Of Pi3k-Gamma Bound To A
4-(Morpholin-4-Yl)- (6-Oxo-1,
6-Dihydropyrimidin-2-Yl)amide Inhibitor
pdb|4HLE|A Chain A, Compound 21 (1-alkyl-substituted 1,2,4-triazoles)
Length = 966
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 98 PPYPARSTFQVGKLPLIDFCLVVLGGHETL 127
PP PA + + PL+D C V G HE L
Sbjct: 168 PPDPALDEVRKEEWPLVDDCTGVTGYHEQL 197
>pdb|3L54|A Chain A, Structure Of Pi3k Gamma With Inhibitor
Length = 966
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 98 PPYPARSTFQVGKLPLIDFCLVVLGGHETL 127
PP PA + + PL+D C V G HE L
Sbjct: 168 PPDPALDEVRKEEWPLVDDCTGVTGYHEQL 197
>pdb|4ANX|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 98 PPYPARSTFQVGKLPLIDFCLVVLGGHETL 127
PP PA + + PL+D C V G HE L
Sbjct: 172 PPDPALDEVRKEEWPLVDDCTGVTGYHEQL 201
>pdb|3APC|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5132799
pdb|3APD|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5108134
pdb|3APF|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5039699
Length = 966
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 98 PPYPARSTFQVGKLPLIDFCLVVLGGHETL 127
PP PA + + PL+D C V G HE L
Sbjct: 174 PPDPALDEVRKEEWPLVDDCTGVTGYHEQL 203
>pdb|1E8X|A Chain A, Structural Insights Into Phoshoinositide 3-Kinase
Enzymatic Mechanism And Signalling
pdb|1E90|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E7V|A Chain A, Structure Determinants Of Phosphoinositide 3-kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8W|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 961
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 98 PPYPARSTFQVGKLPLIDFCLVVLGGHETL 127
PP PA + + PL+D C V G HE L
Sbjct: 169 PPDPALDEVRKEEWPLVDDCTGVTGYHEQL 198
>pdb|1E7U|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 961
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 98 PPYPARSTFQVGKLPLIDFCLVVLGGHETL 127
PP PA + + PL+D C V G HE L
Sbjct: 169 PPDPALDEVRKEEWPLVDDCTGVTGYHEQL 198
>pdb|4ANV|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 98 PPYPARSTFQVGKLPLIDFCLVVLGGHETL 127
PP PA + + PL+D C V G HE L
Sbjct: 172 PPDPALDEVRKEEWPLVDDCTGVTGYHEQL 201
>pdb|4ANU|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors.
pdb|4ANW|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 98 PPYPARSTFQVGKLPLIDFCLVVLGGHETL 127
PP PA + + PL+D C V G HE L
Sbjct: 172 PPDPALDEVRKEEWPLVDDCTGVTGYHEQL 201
>pdb|3NZS|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And
-Pyridine Inhibitors Of Pi3-Kinase
pdb|3NZU|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And
-Pyridine Inhibitors Of Pi3-Kinase
Length = 954
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 98 PPYPARSTFQVGKLPLIDFCLVVLGGHETL 127
PP PA + + PL+D C V G HE L
Sbjct: 164 PPDPALDEVRKEEWPLVDDCTGVTGYHEQL 193
>pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8Z|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|2A4Z|A Chain A, Crystal Structure Of Human Pi3kgamma Complexed With
As604850
pdb|2A5U|A Chain A, Crystal Structure Of Human Pi3kgamma Complexed With
As605240
pdb|2CHW|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110 Alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-39
pdb|2CHX|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-90
pdb|2CHZ|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-93
pdb|3DPD|A Chain A, Achieving Multi-Isoform Pi3k Inhibition In A Series Of
Substituted 3,4-Dihydro-2h-Benzo[1,4]oxazines
pdb|2V4L|A Chain A, Complex Of Human Phosphoinositide 3-kinase Catalytic
Subunit Gamma (p110 Gamma) With Pik-284
pdb|3IBE|A Chain A, Crystal Structure Of A Pyrazolopyrimidine Inhibitor Bound
To Pi3 Kinase Gamma
pdb|3LJ3|A Chain A, Pi3-Kinase-Gamma With A Pyrrolopyridine-Benzofuran
Inhibitor
pdb|3ML8|A Chain A, Discovery Of The Highly Potent Pi3kMTOR DUAL INHIBITOR
PF-0 Through Structure Based Drug Design
pdb|3ML9|A Chain A, Discovery Of The Highly Potent Pi3kMTOR DUAL INHIBITOR
PF-0 Through Structure Based Drug Design
pdb|3MJW|A Chain A, Pi3 Kinase Gamma With A Benzofuranone Inhibitor
pdb|3P2B|A Chain A, Crystal Structure Of Pi3k Gamma With
3-(2-Morpholino-6-(Pyridin-3-
Ylamino)pyrimidin-4-Yl)phenol
pdb|3SD5|A Chain A, Crystal Structure Of Pi3k Gamma With
5-(2,4-Dimorpholinopyrimidin-6-
Yl)-4-(Trifluoromethyl)pyridin-2-Amine
pdb|3TJP|A Chain A, Crystal Structure Of Pi3k Gamma With
N6-(3,4-Dimethoxyphenyl)-2-
Morpholino-[4,5'-Bipyrimidine]-2',6-Diamine
pdb|4FUL|A Chain A, Pi3 Kinase Gamma Bound To A Pyrmidine Inhibitor
Length = 966
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 98 PPYPARSTFQVGKLPLIDFCLVVLGGHETL 127
PP PA + + PL+D C V G HE L
Sbjct: 168 PPDPALDEVRKEEWPLVDDCTGVTGYHEQL 197
>pdb|3ENE|A Chain A, Complex Of Pi3k Gamma With An Inhibitor
Length = 959
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 98 PPYPARSTFQVGKLPLIDFCLVVLGGHETL 127
PP PA + + PL+D C V G HE L
Sbjct: 167 PPDPALDEVRKEEWPLVDDCTGVTGYHEQL 196
>pdb|1HE8|A Chain A, Ras G12v-Pi 3-Kinase Gamma Complex
Length = 965
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 98 PPYPARSTFQVGKLPLIDFCLVVLGGHETL 127
PP PA + + PL D C V G HE L
Sbjct: 167 PPDPALDEVRKEEWPLADDCTGVTGYHEQL 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,451,421
Number of Sequences: 62578
Number of extensions: 119383
Number of successful extensions: 336
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 49
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)