Query psy1836
Match_columns 127
No_of_seqs 222 out of 1048
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 17:36:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l7q_A Putative translation in 100.0 4.5E-38 1.5E-42 214.0 12.9 115 10-125 8-123 (125)
2 3r0p_A L-PSP putative endoribo 100.0 8.6E-38 2.9E-42 213.0 13.0 112 11-123 12-124 (127)
3 3k0t_A Endoribonuclease L-PSP, 100.0 8.4E-38 2.9E-42 217.2 12.4 112 11-123 28-139 (143)
4 2cvl_A TTHA0137, protein trans 100.0 1.5E-37 5.2E-42 211.0 13.3 112 10-123 8-120 (124)
5 2dyy_A UPF0076 protein PH0854; 100.0 1.3E-37 4.4E-42 211.9 12.9 111 12-123 11-122 (126)
6 1x25_A Hypothetical UPF0076 pr 100.0 1.1E-37 3.9E-42 212.7 12.6 112 11-123 12-124 (128)
7 1qd9_A Purine regulatory prote 100.0 1.9E-37 6.3E-42 210.7 13.1 111 11-123 9-120 (124)
8 2b33_A Protein synthesis inhib 100.0 1.9E-37 6.6E-42 214.7 13.1 113 10-123 21-134 (140)
9 1qu9_A YJGF protein; structura 100.0 1.4E-37 4.8E-42 212.2 11.2 113 10-123 9-124 (128)
10 2ig8_A Hypothetical protein PA 100.0 1.7E-37 5.7E-42 215.7 11.7 122 1-123 1-131 (144)
11 3quw_A Protein MMF1; chorismat 100.0 3.2E-37 1.1E-41 216.3 13.0 109 13-123 39-148 (153)
12 1jd1_A Hypothetical 13.9 kDa p 100.0 4E-37 1.4E-41 210.3 12.7 109 13-123 15-124 (129)
13 3m1x_A Putative endoribonuclea 100.0 3.1E-37 1E-41 215.5 12.1 112 11-123 33-145 (148)
14 2cwj_A Putative endonuclease; 100.0 1.2E-37 4.1E-42 211.3 9.4 111 12-123 5-116 (123)
15 1qah_A Perchloric acid soluble 100.0 7.5E-37 2.6E-41 210.7 13.3 111 12-123 14-125 (136)
16 1xrg_A Putative translation in 100.0 9E-37 3.1E-41 214.7 13.1 114 9-123 39-153 (156)
17 1pf5_A Hypothetical protein YJ 100.0 1.9E-36 6.5E-41 207.4 13.9 109 12-123 15-125 (131)
18 3lyb_A Putative endoribonuclea 100.0 3.1E-36 1.1E-40 213.7 12.6 113 10-122 6-145 (165)
19 3vcz_A Endoribonuclease L-PSP; 100.0 1.5E-36 5E-41 213.1 10.7 112 11-123 34-149 (153)
20 3v4d_A Aminoacrylate peracid r 100.0 6.3E-36 2.1E-40 205.6 13.4 110 13-123 19-129 (134)
21 3i3f_A Hypothetical protein; s 100.0 3.4E-36 1.2E-40 208.5 12.1 117 4-123 12-136 (141)
22 3lme_A Possible translation in 100.0 4.7E-36 1.6E-40 207.2 11.4 110 12-122 13-124 (138)
23 3gtz_A Putative translation in 100.0 3.1E-35 1.1E-39 199.8 12.2 102 14-122 10-112 (124)
24 3i7t_A RV2704, putative unchar 100.0 2.7E-35 9.3E-40 205.7 11.1 113 4-123 1-117 (149)
25 3kjj_A NMB1025 protein; YJGF p 100.0 2.2E-34 7.7E-39 196.6 13.1 106 11-123 13-119 (128)
26 3k12_A Uncharacterized protein 100.0 1.4E-34 4.9E-39 196.0 10.8 104 13-122 6-110 (122)
27 2ewc_A Conserved hypothetical 100.0 5.7E-34 1.9E-38 194.1 13.0 105 13-123 9-117 (126)
28 2otm_A Hypothetical protein; s 100.0 2.7E-33 9.4E-38 196.6 8.8 112 11-123 20-151 (154)
29 3d01_A Uncharacterized protein 100.0 6.6E-33 2.3E-37 196.6 8.2 111 12-123 29-160 (165)
30 1spv_A Putative polyprotein/ph 55.1 22 0.00075 24.4 4.9 27 72-98 151-177 (184)
31 1ais_A TBP, protein (tata-bind 49.1 11 0.00039 26.1 2.6 22 47-68 72-93 (182)
32 1mp9_A Tata-binding protein; t 48.8 15 0.00051 25.9 3.2 36 27-68 62-97 (198)
33 1xho_A Chorismate mutase; sout 44.9 68 0.0023 21.6 6.2 35 54-88 53-89 (148)
34 2kjw_A TS9, 30S ribosomal prot 42.5 28 0.00095 21.6 3.4 25 48-72 58-82 (96)
35 3q71_A Poly [ADP-ribose] polym 41.8 60 0.0021 23.1 5.6 52 47-99 166-218 (221)
36 2x47_A Macro domain-containing 40.9 60 0.002 23.2 5.5 27 72-98 208-234 (235)
37 4gni_A Putative heat shock pro 38.7 64 0.0022 24.2 5.7 51 47-99 320-371 (409)
38 1dbf_A Protein (chorismate mut 38.0 84 0.0029 20.6 6.1 35 54-88 24-60 (127)
39 3zzp_A TS9, ribosomal protein 37.9 33 0.0011 20.3 3.1 20 48-67 58-77 (77)
40 3r8n_F 30S ribosomal protein S 37.4 18 0.0006 22.4 1.9 28 45-72 12-39 (100)
41 3r3t_A 30S ribosomal protein S 34.6 39 0.0013 20.8 3.2 28 45-72 15-43 (99)
42 2juz_A UPF0352 protein HI0840; 34.0 41 0.0014 20.3 3.0 23 48-70 9-31 (80)
43 2jr2_A UPF0352 protein CPS_261 33.3 38 0.0013 20.2 2.8 23 48-70 9-31 (76)
44 2juw_A UPF0352 protein SO_2176 32.9 40 0.0014 20.3 2.9 23 48-70 9-31 (80)
45 2jpq_A UPF0352 protein VP2129; 32.3 42 0.0014 20.3 2.9 23 48-70 9-31 (83)
46 2z8u_A Tata-box-binding protei 31.2 21 0.00071 25.0 1.6 22 47-68 76-97 (188)
47 2jrx_A UPF0352 protein YEJL; h 31.2 42 0.0015 20.3 2.8 23 48-70 9-31 (83)
48 1xhj_A Nitrogen fixation prote 30.6 44 0.0015 20.4 2.9 54 45-98 6-72 (88)
49 3q6z_A Poly [ADP-ribose] polym 30.6 62 0.0021 22.8 4.1 26 72-97 189-214 (214)
50 1cqm_A Ribosomal protein S6; a 30.6 44 0.0015 20.6 3.0 25 48-72 16-40 (101)
51 1rki_A Hypothetical protein; s 30.4 60 0.0021 20.2 3.4 22 12-33 76-97 (102)
52 1ufy_A Chorismate mutase; shik 30.1 1.1E+02 0.0039 19.8 6.1 35 54-88 23-60 (122)
53 3i33_A Heat shock-related 70 k 29.0 1E+02 0.0035 23.0 5.3 50 47-98 327-377 (404)
54 1ytb_A Protein (tata binding p 27.1 50 0.0017 22.8 3.0 22 47-68 68-89 (180)
55 2wte_A CSA3; antiviral protein 27.0 1.7E+02 0.0058 20.8 7.1 46 47-97 45-90 (244)
56 3qfu_A 78 kDa glucose-regulate 25.7 1.6E+02 0.0054 21.7 5.9 50 47-98 319-369 (394)
57 3a1y_A 50S ribosomal protein P 25.1 42 0.0014 18.7 1.9 16 56-71 20-35 (58)
58 1rm1_A Tata-box binding protei 25.0 70 0.0024 23.2 3.6 36 27-68 114-149 (240)
59 3eno_A Putative O-sialoglycopr 24.3 1.1E+02 0.0038 22.8 4.7 44 41-85 42-86 (334)
60 3eik_A Tata-box-binding protei 24.0 63 0.0021 23.1 3.1 24 47-70 106-129 (218)
61 2lbf_A 60S acidic ribosomal pr 23.8 49 0.0017 19.2 2.1 16 56-71 26-41 (69)
62 1oef_A Apolipoprotein E; glyco 22.9 67 0.0023 14.7 2.3 16 45-60 8-23 (26)
63 2j5a_A 30S ribosomal protein S 22.7 57 0.002 20.4 2.4 24 48-71 22-45 (110)
64 3nuf_A PRD-containing transcri 22.4 98 0.0033 20.0 3.5 40 32-72 1-49 (119)
65 2wkn_A Formamidase, gamma-lact 21.3 1.4E+02 0.005 23.3 4.9 45 25-71 303-348 (409)
66 3u7r_A NADPH-dependent FMN red 20.6 1.1E+02 0.0038 20.8 3.8 32 35-67 151-183 (190)
67 2lbf_B 60S acidic ribosomal pr 20.5 56 0.0019 19.0 1.9 16 56-71 22-37 (70)
No 1
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} SCOP: d.79.1.0
Probab=100.00 E-value=4.5e-38 Score=213.98 Aligned_cols=115 Identities=36% Similarity=0.553 Sum_probs=108.6
Q ss_pred ccccCCCCcceEEEECCEEEEccccccCCCCCcc-cccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHH
Q psy1836 10 VSLVGSASAFQAVQHDNTLYISGVLGIDASSGKM-AEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATV 88 (127)
Q Consensus 10 ~~~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~-~~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~ 88 (127)
..+.|.++|||++++|+++|+|||+|.|+.+|++ .+|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+
T Consensus 8 ~~p~p~g~ys~av~~g~~l~vSGq~~~d~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~ 87 (125)
T 3l7q_A 8 KAPAAIGPYVQGKIVGNLLFASGQVPLSPETGQVIGTTIEEQTQQVLKNISAILTEAGTDFDHVVKTTCFLSDIDDFVPF 87 (125)
T ss_dssp TSCCCCSSCBSEEEETTEEEEEEECSBCTTTCSBCCSSHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEESCGGGHHHH
T ss_pred CCCCCCCCCCCEEEECCEEEEeccCCcCCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHH
Confidence 4567889999999999999999999999978999 499999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCccEEEEcCCCCCCCEEEEEecccc
Q psy1836 89 NNVYGQFFKPPYPARSTFQVGKLPLIDFCLVVLGGHE 125 (127)
Q Consensus 89 ~~v~~~~f~~~~Pa~t~v~V~~L~~~~~liEi~~~~~ 125 (127)
|++|.+||++++|+||+++|+.|| ++++||||+-..
T Consensus 88 n~v~~~~f~~~~Part~v~v~~L~-~~~~VEIe~iA~ 123 (125)
T 3l7q_A 88 NEVYATAFKSDFPARSAVEVARLP-KDVKIEIEVIAE 123 (125)
T ss_dssp HHHHHTTCCSSCCEEEEEECSBCG-GGCSEEEEEEEE
T ss_pred HHHHHHHcCCCCCcEEEEEcccCC-CCCEEEEEEEEE
Confidence 999999999999999999999998 899999998543
No 2
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0
Probab=100.00 E-value=8.6e-38 Score=213.03 Aligned_cols=112 Identities=31% Similarity=0.539 Sum_probs=106.4
Q ss_pred cccCCCCcceEEEECCEEEEccccccCCCCCccc-ccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHHH
Q psy1836 11 SLVGSASAFQAVQHDNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVN 89 (127)
Q Consensus 11 ~~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~-~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~~ 89 (127)
.+.|.++|||++++|+++|+|||+|.|+.+|+++ +|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+|
T Consensus 12 ~p~~~g~ys~av~~g~~l~vSGq~~~~~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~l~~vvk~~vyl~d~~~~~~~~ 91 (127)
T 3r0p_A 12 APAAIGTYSQAVKVNNTVYLSGQIPLDPVTMQLVEGDFAVQAHQVFKNLRAVCEAAGGGLRDIVKLNVYLTDLANFPIVN 91 (127)
T ss_dssp SCCCCSSCCSEEEETTEEEEEEECSBCTTTSSBCSSCHHHHHHHHHHHHHHHHHHTTSCGGGEEEEEEEESCGGGHHHHH
T ss_pred CCCCCCCCCCeEEECCEEEEeccCCcCCCCCcCCCCCHHHHHHHHHHHHHHHHHHhCCCHHHEEEEEEEEcCHHHHHHHH
Confidence 3557789999999999999999999999669988 899999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 90 NVYGQFFKPPYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 90 ~v~~~~f~~~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
++|.+||++++|+||+++|+.|| ++++||||+-
T Consensus 92 ~v~~~~f~~~~Part~v~V~~L~-~~~~VEIe~i 124 (127)
T 3r0p_A 92 EVMGQYFQAPYPARAAIGINQLP-RASLIEADGI 124 (127)
T ss_dssp HHHHHHCCSSCCEEEEEECSBCG-GGCSEEEEEE
T ss_pred HHHHHHcCCCCCcEEEEEcccCC-CCCEEEEEEE
Confidence 99999999999999999999998 7999999974
No 3
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV}
Probab=100.00 E-value=8.4e-38 Score=217.19 Aligned_cols=112 Identities=34% Similarity=0.591 Sum_probs=106.4
Q ss_pred cccCCCCcceEEEECCEEEEccccccCCCCCcccccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHHHH
Q psy1836 11 SLVGSASAFQAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVNN 90 (127)
Q Consensus 11 ~~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~~~ 90 (127)
.+.|.++|||++++|+++|+|||+|.|+.+|++++|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+|+
T Consensus 28 ~p~p~g~YS~av~~g~~lfvSGq~~~d~~~g~~~~d~~~Qt~~~l~ni~aiL~~aG~~l~~Vvk~tvyl~d~~df~~~n~ 107 (143)
T 3k0t_A 28 APAAIGPYSQAIKAGNTVYMSGQIPLDPSTMELVEGIEAQITQVFENLKSVAQAAGGSFKDIVKLNIFLTDLGHFAKVNE 107 (143)
T ss_dssp SCCCCSSCCSEEEETTEEEEEEECSBCTTTCSBCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHH
T ss_pred CCCCCCCcCcEEEECCEEEEeeeCCcCCCCCcCCcCHHHHHHHHHHHHHHHHHHhCCChHHEEEEEEEEcChHHHHHHHH
Confidence 34567899999999999999999999996699889999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 91 VYGQFFKPPYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 91 v~~~~f~~~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
+|.+||++++|+||+++|+.|| ++++||||+-
T Consensus 108 v~~~~f~~~~PArt~v~V~~Lp-~~~lVEIe~i 139 (143)
T 3k0t_A 108 IMGSYFSQPYPARAAIGVAALP-RGAQVEMDAI 139 (143)
T ss_dssp HHTTTCCSSCCEEEEEECSBCG-GGCSEEEEEE
T ss_pred HHHHHcCCCCCcEEEEEcccCC-CCCEEEEEEE
Confidence 9999999999999999999998 7999999975
No 4
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A
Probab=100.00 E-value=1.5e-37 Score=211.02 Aligned_cols=112 Identities=30% Similarity=0.531 Sum_probs=106.6
Q ss_pred ccccCCCCcceEEEECCEEEEccccccCCCCCccc-ccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHH
Q psy1836 10 VSLVGSASAFQAVQHDNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATV 88 (127)
Q Consensus 10 ~~~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~-~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~ 88 (127)
+.+.+.++|||++++|+++|+|||+|.|+ +|++. +|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+
T Consensus 8 ~~p~~~g~ys~av~~g~~~~vSGq~~~~~-~g~~~~~~~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~ 86 (124)
T 2cvl_A 8 RAPAAIGPYAQAVKAGGFVFVSGQIPLAP-DGSLVEGDIRVQTERVMENLKAVLEAAGSGLSRVVQTTCFLADMEDFPGF 86 (124)
T ss_dssp TSCCCCSSCBSEEEETTEEEEEEECSBCT-TSCBCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHH
T ss_pred CCCCCCCCcCCEEEECCEEEEeeeCCcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcChHHHHHH
Confidence 34557789999999999999999999999 89997 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 89 NNVYGQFFKPPYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 89 ~~v~~~~f~~~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
|++|.+||++++|+||+++|+.|| ++++||||+-
T Consensus 87 ~~~~~~~f~~~~Part~v~v~~L~-~~~~VEIe~i 120 (124)
T 2cvl_A 87 NEVYARYFTPPYPARATVAVKALP-RGVRVEVACV 120 (124)
T ss_dssp HHHHHHHCCSSCCEEEEEECSCCG-GGCSEEEEEE
T ss_pred HHHHHHHcCCCCCceEEEEcccCC-CCCEEEEEEE
Confidence 999999999999999999999997 8999999974
No 5
>2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-37 Score=211.90 Aligned_cols=111 Identities=34% Similarity=0.564 Sum_probs=104.6
Q ss_pred ccCCCCcceEEEECCEEEEccccccCCCCCccc-ccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHHHH
Q psy1836 12 LVGSASAFQAVQHDNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVNN 90 (127)
Q Consensus 12 ~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~-~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~~~ 90 (127)
+.+.++|||++++|+++|+|||+|.|+.+|+++ +|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+|+
T Consensus 11 p~~~g~ys~av~~g~~l~vSGq~~~~~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~ 90 (126)
T 2dyy_A 11 PKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNE 90 (126)
T ss_dssp CCCCSSCBSEEEETTEEEEEEECSBCTTTCSBCSSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECC-CCTTHHHH
T ss_pred CCCCCCcccEEEECCEEEEeeeCCcCCCCCcCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHH
Confidence 456788999999999999999999999559988 8999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 91 VYGQFFKPPYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 91 v~~~~f~~~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
+|.+||++++|+||+++|+.|| ++++||||+-
T Consensus 91 ~~~~~f~~~~Part~v~v~~L~-~~~~VEIe~i 122 (126)
T 2dyy_A 91 VYAEYFGESKPARVAVEVSRLP-KDVLIEIEAI 122 (126)
T ss_dssp HHHHHHTTTCCEEEEEECSCCG-GGCSEEEEEE
T ss_pred HHHHHcCCCCCcEEEEEcccCC-CCCEEEEEEE
Confidence 9999999999999999999998 7999999974
No 6
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1
Probab=100.00 E-value=1.1e-37 Score=212.73 Aligned_cols=112 Identities=33% Similarity=0.483 Sum_probs=106.0
Q ss_pred cccCCCCcceEEEECCEEEEccccccCCCCCccc-ccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHHH
Q psy1836 11 SLVGSASAFQAVQHDNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVN 89 (127)
Q Consensus 11 ~~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~-~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~~ 89 (127)
.+.|.++|||++++|+++|+|||+|.|+.+|++. +|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+|
T Consensus 12 ~p~~~g~ys~av~~g~~l~vSGq~~~~~~~g~~~~~~~~~Q~~~~l~ni~~~L~~ag~~l~~vvk~~vyl~d~~~~~~~n 91 (128)
T 1x25_A 12 APKPVGPYSQAIKVGNTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSLSDVAMAFVFLKDMNMFNDFN 91 (128)
T ss_dssp SCCCCSSCCSEEEETTEEEEEEECSEETTTTEECSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHH
T ss_pred CCCCCCCcCCEEEECCEEEEeeeCCcCCCCCcCCCccHHHHHHHHHHHHHHHHHHhCCCHHHEEEEEEEECCHHHHHHHH
Confidence 3456789999999999999999999999559986 999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 90 NVYGQFFKPPYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 90 ~v~~~~f~~~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
++|.+||++++|+||+++|+.|| ++++||||+-
T Consensus 92 ~~~~~~f~~~~Part~v~V~~L~-~~~~VEIe~i 124 (128)
T 1x25_A 92 SVYAEYFKDKPPARVTVEVSRLP-KDALIEIAVI 124 (128)
T ss_dssp HHHHHHCCSSCCEEEEEECSCCG-GGCSEEEEEE
T ss_pred HHHHHHcCCCCCCEEEEEcccCC-CCCEEEEEEE
Confidence 99999999999999999999998 8999999974
No 7
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1
Probab=100.00 E-value=1.9e-37 Score=210.66 Aligned_cols=111 Identities=35% Similarity=0.575 Sum_probs=105.8
Q ss_pred cccCCCCcceEEEECCEEEEccccccCCCCCccc-ccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHHH
Q psy1836 11 SLVGSASAFQAVQHDNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVN 89 (127)
Q Consensus 11 ~~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~-~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~~ 89 (127)
.+.|.++|||++++|+++|+|||+|.|+ +|+++ +|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+|
T Consensus 9 ~p~~~g~ys~av~~g~~v~vSGq~~~~~-~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n 87 (124)
T 1qd9_A 9 APAAIGPYSQGIIVNNMFYSSGQIPLTP-SGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVN 87 (124)
T ss_dssp SCCCCSSCBSEEEETTEEEECCBCSBCT-TSCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHH
T ss_pred CCCCCCCCCCEEEECCEEEEeeeCCcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcChHHHHHHH
Confidence 3457789999999999999999999999 99998 899999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 90 NVYGQFFKPPYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 90 ~v~~~~f~~~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
++|.+||++++|+||+++|+.|| ++++||||+-
T Consensus 88 ~~~~~~f~~~~Part~v~v~~L~-~~~~VEIe~i 120 (124)
T 1qd9_A 88 EVYGQYFDTHKPARSCVEVARLP-KDALVEIEVI 120 (124)
T ss_dssp HHHHHHSSSCCCEEEEEECSBCG-GGCSEEEEEE
T ss_pred HHHHHHcCCCCCCeEEEEcccCC-CCCEEEEEEE
Confidence 99999999999999999999998 7999999974
No 8
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1
Probab=100.00 E-value=1.9e-37 Score=214.70 Aligned_cols=113 Identities=29% Similarity=0.453 Sum_probs=106.8
Q ss_pred ccccCCCCcceEEEECCEEEEccccccCCCCCccc-ccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHH
Q psy1836 10 VSLVGSASAFQAVQHDNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATV 88 (127)
Q Consensus 10 ~~~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~-~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~ 88 (127)
..+.|.++||+++++|+++|+|||+|.|+.+|+++ +|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+
T Consensus 21 ~~p~~~g~ys~av~~g~~lfvSGq~~~d~~tG~~~~~d~~~Qt~~~l~ni~~~L~~aG~~l~~Vvk~tvyl~d~~df~~~ 100 (140)
T 2b33_A 21 KAPKAIGPYSQAVVVGNMMFVSGQIPIDPETGELVQGTIEEKTERVLENLKAILEAGGFSLKDVVKVTVFTTSMDYFQRV 100 (140)
T ss_dssp TSCCCCSSCCSEEEETTEEEEEEECSBCTTTCCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHH
T ss_pred CCCCCCCCcCCEEEECCEEEEEeeCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCchhHHHH
Confidence 44567789999999999999999999999569988 89999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 89 NNVYGQFFKPPYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 89 ~~v~~~~f~~~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
|++|.+||++++|+||+++|+.|| ++++||||+-
T Consensus 101 n~v~~~~f~~~~PArt~V~V~~L~-~~~lVEIe~i 134 (140)
T 2b33_A 101 NEVYSRYFGDHRPARSFVAVAQLP-RNVEIEIEAI 134 (140)
T ss_dssp HHHHHHHHTTTCCEEEEEECSCCG-GGCSEEEEEE
T ss_pred HHHHHHHCCCCCCcEEEEEcccCC-CCCEEEEEEE
Confidence 999999999999999999999998 8999999974
No 9
>1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A
Probab=100.00 E-value=1.4e-37 Score=212.23 Aligned_cols=113 Identities=34% Similarity=0.525 Sum_probs=106.7
Q ss_pred ccccCCCCcceEEEECCEEEEccccccCCCCCcccccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHHH
Q psy1836 10 VSLVGSASAFQAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVN 89 (127)
Q Consensus 10 ~~~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~~ 89 (127)
..+.+.++|||++++|+++|+|||+|.|+.+|++.+|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+|
T Consensus 9 ~~p~~~g~ys~av~~g~~l~vSGq~~~d~~~g~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n 88 (128)
T 1qu9_A 9 NAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPADVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVN 88 (128)
T ss_dssp TSCCCCSSCBSEEECSSEEEECCBCSCCTTTCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHH
T ss_pred CCCCCCCCccceEEECCEEEEeccCCccCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHH
Confidence 34567789999999999999999999998788888999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCC---CCccEEEEcCCCCCCCEEEEEecc
Q psy1836 90 NVYGQFFKPP---YPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 90 ~v~~~~f~~~---~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
++|.+||+++ +|+||+++|+.|| ++++||||+-
T Consensus 89 ~~~~~~f~~~~~~~Part~v~v~~L~-~~~~VEIe~i 124 (128)
T 1qu9_A 89 ATYEAFFTEHNATFPARSCVEVARLP-KDVKIEIEAI 124 (128)
T ss_dssp HHHHHHHHHTTCCCCEEEEEECSBCG-GGCSEEEEEE
T ss_pred HHHHHHcCCCCCCCCCEEEEEhhhCC-CCCEEEEEEE
Confidence 9999999987 7999999999999 8999999974
No 10
>2ig8_A Hypothetical protein PA3499; structural genomics, PSI-2, Pro structure initiative; 1.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.7e-37 Score=215.72 Aligned_cols=122 Identities=20% Similarity=0.262 Sum_probs=109.3
Q ss_pred Cccccccc--cccccCCCCcceEEEECCEEEEccccccCCCCCccc--c---cHHHHHHHHHHHHHHHHHHcCCCccceE
Q psy1836 1 MCLMLHAS--LVSLVGSASAFQAVQHDNTLYISGVLGIDASSGKMA--E---GVENQAKQALTNMGHILKEAGGSYEHVV 73 (127)
Q Consensus 1 ~~~~~~~~--~~~~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~--~---d~~~Q~~~~~~ni~~~L~~~G~~~~~vv 73 (127)
|+-|+... .-.+.+.++|||++++|+++|+|||+|.|+ +|++. + |+++|++++|+||+++|+++|++++||+
T Consensus 1 m~~m~~~~~~~~p~~~~~~ys~av~~g~~l~vSGq~~~~~-~g~~~~~~~~~d~~~Q~~~~l~ni~~~L~~aG~~l~~vv 79 (144)
T 2ig8_A 1 MTAVRRIRAAALPDLPDASWSNALLVGEELVMSGMTAHPA-TRQAAERGAALDAHAQALVVLGKVKALLEAAGGHVGNLY 79 (144)
T ss_dssp CCCEEECCBTTBCCCTTCSSCSEEEETTEEEECCBCCTTH-HHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred CCcccccceecCCCCCCCCcCCEEEECCEEEEeeeCCcCC-CCcEecCCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHEE
Confidence 66676542 222446788999999999999999999998 67765 6 9999999999999999999999999999
Q ss_pred EEEEEeCCCCCHHHHHHHHHhhc--CCCCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 74 KTTILLNDINDFATVNNVYGQFF--KPPYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 74 ~~~vyl~d~~~~~~~~~v~~~~f--~~~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
|+++|++|+++|+.++++|.+|| +.++|+||+|+|+.||.|+++||||+-
T Consensus 80 k~~vyl~d~~df~~~~~v~~~~f~~~~~~PArt~v~V~~L~~p~~~VEIe~i 131 (144)
T 2ig8_A 80 KLNVYVTRIADKDAIGRARQEFFAGQGTFPASTLVEVSGLVFPELLVEIDAW 131 (144)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHTTTCSSCCEEEEEECSBCSSTTCCEEEEEE
T ss_pred EEEEEECChHHHHHHHHHHHHHhcCCCCCCCEEEEEecccCCCCCEEEEEEE
Confidence 99999999999999999999999 566999999999999999999999973
No 11
>3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-37 Score=216.31 Aligned_cols=109 Identities=31% Similarity=0.486 Sum_probs=104.2
Q ss_pred cCCCCcceEEEECCEEEEccccccCCCCCccc-ccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHHHHH
Q psy1836 13 VGSASAFQAVQHDNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVNNV 91 (127)
Q Consensus 13 ~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~-~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~~~v 91 (127)
.|.++||+++++|+++|+|||+|.|+ +|++. +|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+|++
T Consensus 39 ~p~g~YS~av~~g~~lfvSGq~~~d~-~g~~~~gdi~~Qt~~~l~Ni~a~L~~aG~~l~dVVkvtvyl~d~~df~~~n~v 117 (153)
T 3quw_A 39 PAAASYSQAMKANNFVYVSGQIPYTP-DNKPVQGSISEKAEQVFQNVKNILAESNSSLDNIVKVNVFLADMKNFAEFNSV 117 (153)
T ss_dssp CCCTTCCSEEEETTEEEEEEECSBCT-TSCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHH
T ss_pred CCCCCcCCEEEECCEEEEeeeCCcCC-CCCCcCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHH
Confidence 46678999999999999999999999 78876 89999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 92 YGQFFKPPYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 92 ~~~~f~~~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
|.+||++++|+||+|+|+.|| ++++||||+-
T Consensus 118 ~~~~f~~~~PArt~V~V~~L~-~~~lVEIeai 148 (153)
T 3quw_A 118 YAKHFHTHKPARSCVGVASLP-LNVDLEMEVI 148 (153)
T ss_dssp HHHHSSSCCCEEEEEECSCCG-GGCSEEEEEE
T ss_pred HHHHcCCCCCcEEEEEcccCC-CCCEEEEEEE
Confidence 999999889999999999998 8999999974
No 12
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1
Probab=100.00 E-value=4e-37 Score=210.29 Aligned_cols=109 Identities=30% Similarity=0.536 Sum_probs=104.0
Q ss_pred cCCCCcceEEEECCEEEEccccccCCCCCccc-ccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHHHHH
Q psy1836 13 VGSASAFQAVQHDNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVNNV 91 (127)
Q Consensus 13 ~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~-~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~~~v 91 (127)
.+.++|||++++|+++|+|||+|.|+ +|++. +|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+|++
T Consensus 15 ~~~~~ys~av~~g~~l~vSGq~~~~~-~g~~~~g~~~~Q~~~~l~ni~~~L~~aG~~~~~vvk~~vyl~d~~d~~~~n~~ 93 (129)
T 1jd1_A 15 AAAASYSHAMKVNNLIFLSGQIPVTP-DNKLVEGSIADKAEQVIQNIKNVLEASNSSLDRVVKVNIFLADINHFAEFNSV 93 (129)
T ss_dssp CCSSSCCSEEEETTEEEEEEECSBCT-TSCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHH
T ss_pred CCCCCcCCEEEECCEEEEeeeCCcCC-CCCCcCCCHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEEcChHHHHHHHHH
Confidence 45678999999999999999999999 68887 89999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 92 YGQFFKPPYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 92 ~~~~f~~~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
|.+||++++|+||+++|+.|| ++++||||+-
T Consensus 94 ~~~~f~~~~Part~v~v~~L~-~~~~VEIe~i 124 (129)
T 1jd1_A 94 YAKYFNTHKPARSCVAVAALP-LGVDMEMEAI 124 (129)
T ss_dssp HHHHSSSSCCEEEEEECSBCG-GGCSEEEEEE
T ss_pred HHHHcCCCCCcEEEEEeccCC-CCCEEEEEEE
Confidence 999999999999999999998 7999999974
No 13
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A*
Probab=100.00 E-value=3.1e-37 Score=215.45 Aligned_cols=112 Identities=37% Similarity=0.527 Sum_probs=106.3
Q ss_pred cccCCCCcceEEEECCEEEEccccccCCCCCccc-ccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHHH
Q psy1836 11 SLVGSASAFQAVQHDNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVN 89 (127)
Q Consensus 11 ~~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~-~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~~ 89 (127)
.+.|.++|||++++|+++|+|||+|.|+.+|+++ +|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+|
T Consensus 33 ~p~p~g~YS~av~~g~~lfvSGq~~~d~~~G~~~~~d~~~Q~~~~l~nl~aiL~~aG~~l~~Vvk~tvyl~d~~df~~~n 112 (148)
T 3m1x_A 33 APEAVGAYSQAIICNGXVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFN 112 (148)
T ss_dssp SCCCCSSCCSEEEETTEEEEEEEESEETTTTEESCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHH
T ss_pred CCCCCCCCCcEEEECCEEEEEeeCCcCCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHH
Confidence 3456789999999999999999999999789987 799999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 90 NVYGQFFKPPYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 90 ~v~~~~f~~~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
++|.+||++++|+||+|+|+.|| ++++||||+-
T Consensus 113 ~v~~~~fg~~~PArt~V~V~~L~-~~~lVEIe~i 145 (148)
T 3m1x_A 113 GIYAEAFGNHKPARACFAAAALP-KGALVEVECI 145 (148)
T ss_dssp HHHHHHHTTCCCEEEEEECSCCG-GGCSEEEEEE
T ss_pred HHHHHHhCCCCCcEEEEEcccCC-CCCEEEEEEE
Confidence 99999999889999999999998 8999999974
No 14
>2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1
Probab=100.00 E-value=1.2e-37 Score=211.28 Aligned_cols=111 Identities=33% Similarity=0.548 Sum_probs=105.4
Q ss_pred ccCCCCcceEEEECCEEEEccccccCCCCCccc-ccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHHHH
Q psy1836 12 LVGSASAFQAVQHDNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVNN 90 (127)
Q Consensus 12 ~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~-~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~~~ 90 (127)
+.|.++|||++++|+++|+|||+|.|+.+|++. +|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+|+
T Consensus 5 p~~~g~ys~av~~g~~l~vSGq~~~~~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~l~~vvk~~vyl~d~~df~~~n~ 84 (123)
T 2cwj_A 5 PKPVGPYSQAVESGCFMFVSGQIPINPETGALEEGGFKESAKRALDNLKAIVEGAGYSMDDIVKVTVYITDISRFSEFNE 84 (123)
T ss_dssp CCCCSSCCSCEEETTEEEEEEECCEEGGGTEECSSSSHHHHHHHHHHHHHHHHHTSCCGGGCCEEEEEESSSSHHHHHHH
T ss_pred CCCCCCcccEEEECCEEEEeccCCCCCCCCcCCCccHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEEcCHHHHHHHHH
Confidence 457789999999999999999999999558885 9999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 91 VYGQFFKPPYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 91 v~~~~f~~~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
+|.+||++++|+||+++|+.|| ++++||||+-
T Consensus 85 ~~~~~f~~~~Part~v~V~~L~-~~~~VEIe~i 116 (123)
T 2cwj_A 85 VYREYFNRPYPARAVVGVAALP-LGAPLEVEAV 116 (123)
T ss_dssp HHHTTCCSSCCEEEEEECSCCG-GGCSEEEEEE
T ss_pred HHHHHcCCCCCcEEEEEhhcCC-CCCEEEEEEE
Confidence 9999999999999999999998 8999999974
No 15
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A
Probab=100.00 E-value=7.5e-37 Score=210.69 Aligned_cols=111 Identities=46% Similarity=0.707 Sum_probs=105.0
Q ss_pred ccCCCCcceEEEECCEEEEccccccCCCCCccc-ccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHHHH
Q psy1836 12 LVGSASAFQAVQHDNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVNN 90 (127)
Q Consensus 12 ~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~-~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~~~ 90 (127)
+.+.++|||++++|+++|+|||+|.|+.+|++. +|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+|+
T Consensus 14 p~~~g~ys~av~~g~~l~vSGq~~~d~~~g~~~~~d~~~Q~~~~l~ni~~~L~~aG~~l~~vvk~~vyl~d~~d~~~~n~ 93 (136)
T 1qah_A 14 PAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEILKAAGCDFTNVVKTTVLLADINDFGTVNE 93 (136)
T ss_dssp CCCSSSCCSEEEETTEEEEEEECCBCTTTCSBCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHH
T ss_pred CCCCCCCCCEEEECCEEEEeeECCcCCCCCcCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEccCccHHHHHH
Confidence 456788999999999999999999999668885 9999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 91 VYGQFFKPPYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 91 v~~~~f~~~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
+|.+||++++|+||+++|+.||. +++||||+-
T Consensus 94 ~~~~~f~~~~Part~v~V~~L~~-~~~VEIe~i 125 (136)
T 1qah_A 94 IYKTYFQGNLPARAAYQVAALPK-GSRIEIEAI 125 (136)
T ss_dssp HHHTTCCSSCCEEEEEECSCCGG-GCSEEEEEE
T ss_pred HHHHHcCCCCCcEEEEEcccCCC-CCEEEEEEE
Confidence 99999999999999999999986 999999974
No 16
>1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1
Probab=100.00 E-value=9e-37 Score=214.70 Aligned_cols=114 Identities=37% Similarity=0.606 Sum_probs=106.8
Q ss_pred cccccCCCCcceEEEECCEEEEccccccCCCCCccc-ccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHH
Q psy1836 9 LVSLVGSASAFQAVQHDNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFAT 87 (127)
Q Consensus 9 ~~~~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~-~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~ 87 (127)
...+.+.++|||++++|+++|+|||+|.|+.+|+++ +|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.
T Consensus 39 ~~~p~~~g~YS~av~~g~~lfvSGq~~~d~~tG~l~~~d~~~Qt~~~l~ni~~iL~~aG~~l~~Vvk~tvyl~d~~df~~ 118 (156)
T 1xrg_A 39 NKAPEAIGPYSQAIVTGSFVYTSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNKVVKTTVFIKDMDSFAK 118 (156)
T ss_dssp TTSCCCCSSCCSEEEETTEEEECCBCCBCTTTSSBCSSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHH
T ss_pred CCCCCCCCCCCCEEEECCEEEEEeECCcCCCCCcCCCcCHHHHHHHHHHHHHHHHHHhCCCHHHEEEEEEEECChHHHHH
Confidence 334557789999999999999999999999569987 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 88 VNNVYGQFFKPPYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 88 ~~~v~~~~f~~~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
+|++|.+||++++|+||+|+|+.|| ++++||||+-
T Consensus 119 ~n~v~~~~f~~~~PArt~V~V~~Lp-~~~lVEIe~i 153 (156)
T 1xrg_A 119 VNEVYAKYFSEPYPARSCVEVSKLP-KGVLIEIEAV 153 (156)
T ss_dssp HHHHHHTTCCSSCCEEEEEECSBCG-GGCSEEEEEE
T ss_pred HHHHHHHHcCCCCCceEEEEcCCCC-CCCeEEEEEE
Confidence 9999999999999999999999998 8999999973
No 17
>1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1
Probab=100.00 E-value=1.9e-36 Score=207.36 Aligned_cols=109 Identities=23% Similarity=0.392 Sum_probs=103.3
Q ss_pred ccCCCCcceEEEECCEEEEccccccCCCCCcccccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCC-CCHHHHHH
Q psy1836 12 LVGSASAFQAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDI-NDFATVNN 90 (127)
Q Consensus 12 ~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~-~~~~~~~~ 90 (127)
+.+.++||+++++|+++|+|||+|.|+ +|++++|+++|++++|+||+++|+++|++++||+|+++|++|+ ++|+.+++
T Consensus 15 ~~~~~~ys~av~~g~~l~vSGq~~~~~-~g~~~~d~~~Q~~~~l~ni~~~L~~aG~~~~~vvk~~vyl~d~~~~~~~~~~ 93 (131)
T 1pf5_A 15 LYAEHRYSAAIRSGDLLFVSGQVGSRE-DGTPEPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPENQFEDIMT 93 (131)
T ss_dssp TTTTTTCCSEEEETTEEEEEEECCBCT-TSCBCSSHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESSGGGTHHHHHH
T ss_pred CCCCCCcCCEEEECCEEEEcccCCcCC-CCccCcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCcHHhHHHHHH
Confidence 345789999999999999999999999 7998899999999999999999999999999999999999999 99999999
Q ss_pred HHHhhcCC-CCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 91 VYGQFFKP-PYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 91 v~~~~f~~-~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
+|.+||++ ++|+||+|+|+.|| +++||||+-
T Consensus 94 ~~~~~f~~~~~Part~v~V~~L~--~~~VEIe~i 125 (131)
T 1pf5_A 94 VKNEIFSAPPYPNWTAVGVTWLA--GFDFEIKVI 125 (131)
T ss_dssp HHHHHSCSSSCCCCEEEECSCST--TCSEEEEEE
T ss_pred HHHHHcCCCCCCCeEEEeecccC--CccEEEEEE
Confidence 99999985 69999999999999 899999974
No 18
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae}
Probab=100.00 E-value=3.1e-36 Score=213.68 Aligned_cols=113 Identities=17% Similarity=0.274 Sum_probs=99.7
Q ss_pred ccccCCCCcceEEEECCEEEEccccccCCCCCccc-c-------------------------cHHHHHHHHHHHHHHHHH
Q psy1836 10 VSLVGSASAFQAVQHDNTLYISGVLGIDASSGKMA-E-------------------------GVENQAKQALTNMGHILK 63 (127)
Q Consensus 10 ~~~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~-~-------------------------d~~~Q~~~~~~ni~~~L~ 63 (127)
..+.|.++|||++++|+++|+|||+|.|+.+|+++ + |+++|++++|+||+++|+
T Consensus 6 ~ap~p~g~Ys~av~~G~~lfvSGq~~~~~~~g~l~~g~~~~~~~~~~~~g~~G~~g~~~~~~d~~~Qt~~~l~Ni~aiL~ 85 (165)
T 3lyb_A 6 GAGAPLARYAAWRRAGDFIFLSGIIPVNPLTGTIVNGFQDVPEPVRELLGATGEFSTDAKQGPILAQSWYVLESIRRTVA 85 (165)
T ss_dssp ---------CCEEEETTEEEECCBCCEETTTTEECCSGGGSCHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCEEEECCEEEEeeeCCcCCCCCeEccCcccccccccccccccccccccccccCHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999999999999667776 4 999999999999999999
Q ss_pred HcCCCccceEEEEEEeCCCCCHHHHHHHHHhhcCCCCCccEEEEcCCC-CCCCEEEEEec
Q psy1836 64 EAGGSYEHVVKTTILLNDINDFATVNNVYGQFFKPPYPARSTFQVGKL-PLIDFCLVVLG 122 (127)
Q Consensus 64 ~~G~~~~~vv~~~vyl~d~~~~~~~~~v~~~~f~~~~Pa~t~v~V~~L-~~~~~liEi~~ 122 (127)
++|++++||+|+++|++|+++|+.+|++|.+||++++|+||+|+|+.| |.++++||||+
T Consensus 86 ~aG~~l~~Vvkvtvyl~d~~df~~~n~v~~~~f~~~~PArt~V~V~~L~p~~~~lVEIe~ 145 (165)
T 3lyb_A 86 SAGGQMSDVIKLVQYFRNLDHFPYYSRVRKLFYPDQPPVSTVVQVSEMLPDATVLIEVEA 145 (165)
T ss_dssp TTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHCSSCCCEEEEEECSCCSSCTTCCEEEEE
T ss_pred HhcCChhHhEEEEEEECCHHHhHHHHHHHHHHcCCCCCceEEEEccccCCCCCCEEEEEE
Confidence 999999999999999999999999999999999999999999999999 67999999998
No 19
>3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus}
Probab=100.00 E-value=1.5e-36 Score=213.05 Aligned_cols=112 Identities=32% Similarity=0.572 Sum_probs=105.8
Q ss_pred cccCCCCcceEEEECCEEEEccccccCCCCCcccccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHHHH
Q psy1836 11 SLVGSASAFQAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVNN 90 (127)
Q Consensus 11 ~~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~~~ 90 (127)
.+.|.++||+++++|+++|+|||+|.|+.+|.+.+|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+|+
T Consensus 34 ~p~p~g~YS~av~~g~~lfvSGq~~~d~~~g~v~~d~~~Qt~~~l~nl~a~L~~aG~~l~~Vvk~tvyl~d~~df~~~n~ 113 (153)
T 3vcz_A 34 APAAIGPYIQGVDLGNMVLTSGQIPVNPATGEVPADIAAQARQSLDNVKAVVEASGLTVGDIVKMTVFVKDLNDFGTVNE 113 (153)
T ss_dssp SCCCCSSCBSEEECSSEEEECCBCSCCTTTCCCCSSHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESCGGGHHHHHH
T ss_pred CCCCCCCcCCEEEECCEEEEeeecccCCCCCeeCcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCchHHHHHHH
Confidence 34577899999999999999999999997788889999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCC----CCccEEEEcCCCCCCCEEEEEecc
Q psy1836 91 VYGQFFKPP----YPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 91 v~~~~f~~~----~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
+|.+||+++ +|+||+|+|+.||. +++||||+-
T Consensus 114 v~~~~f~~~~~~~~PArt~V~V~~L~~-~~lVEIeai 149 (153)
T 3vcz_A 114 VYGNFFDEHNVAHYPARSCVEVARLPK-DVGIEIEAI 149 (153)
T ss_dssp HHHHHHHHTTCSSCCEEEEEECSBCGG-GCSEEEEEE
T ss_pred HHHHHhCCCCCCCCCCEEEEEeccCCC-CCEEEEEEE
Confidence 999999987 99999999999997 999999974
No 20
>3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli O6}
Probab=100.00 E-value=6.3e-36 Score=205.59 Aligned_cols=110 Identities=25% Similarity=0.434 Sum_probs=100.1
Q ss_pred cCCCCcceEEEECCEEEEccccccCCCCCccc-ccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHHHHH
Q psy1836 13 VGSASAFQAVQHDNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVNNV 91 (127)
Q Consensus 13 ~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~-~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~~~v 91 (127)
.|.++|||++++|+++|+|||+|.|+.+|.+. +|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+|++
T Consensus 19 ~p~g~ys~av~~g~~l~vSGq~~~d~~~~~~~~~d~~~Q~~~~l~nl~~~L~~aG~~l~~vvk~~vyl~d~~~f~~~n~v 98 (134)
T 3v4d_A 19 APLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEI 98 (134)
T ss_dssp ----CCCSEEEETTEEEEEEECCBCTTSCBSSTTCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHH
T ss_pred CCCCCcCCEEEECCEEEEeccCccCCCCCEECCccHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEECCHHHHHHHHHH
Confidence 45689999999999999999999999555665 89999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 92 YGQFFKPPYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 92 ~~~~f~~~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
|.+||++++|+||+|+|. +..++++||||+-
T Consensus 99 ~~~~f~~~~Part~v~v~-~l~~~~~VEIe~i 129 (134)
T 3v4d_A 99 YAEFFPGDKPARFCIQCG-LVKPDALVEIATI 129 (134)
T ss_dssp HHHHCCSSCCEEEEEECB-CSSTTCCEEEEEE
T ss_pred HHHHcCCCCCcEEEEEcc-ccCCCCEEEEEEE
Confidence 999999889999999997 6678999999974
No 21
>3i3f_A Hypothetical protein; structural genomics, niaid, decode, infectious seattle structural genomics center for infectious disease, unknown function; 1.35A {Giardia lamblia}
Probab=100.00 E-value=3.4e-36 Score=208.52 Aligned_cols=117 Identities=23% Similarity=0.375 Sum_probs=107.8
Q ss_pred cccccccccc---CCCCcceEEEECCEEEEccccccCCCCCcccccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeC
Q psy1836 4 MLHASLVSLV---GSASAFQAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLN 80 (127)
Q Consensus 4 ~~~~~~~~~~---~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~ 80 (127)
|+..++..++ +.++|||++++|+++|+|||+|.|+ +|++++|+++|++++|+||+++|+++|++++||+|+++|++
T Consensus 12 m~~~~~~~p~~~~~~~~ys~av~~g~~vfvSGq~~~d~-~g~~~~~~~~Q~~~~l~nl~~~L~~aG~~~~~Vvk~~vyl~ 90 (141)
T 3i3f_A 12 MPTPTFLVCPDVVKFENVGQIAVVNGMVYLGGSVGIDK-SGTLHKGLEEQTRQTFDNIRKCLEYANSGLDYIVSLNIFLS 90 (141)
T ss_dssp CCCCEEECCTTSCCCTTCBCEEEETTEEEECCBCSBCT-TSCBCSHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEEE
T ss_pred CCceeEECCCCCCCCCCcCcEEEECCEEEEeeeCCcCC-CCCCCcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEc
Confidence 6666665443 5578999999999999999999999 99999789999999999999999999999999999999999
Q ss_pred CCC---CHHHHHHHHHhhc--CCCCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 81 DIN---DFATVNNVYGQFF--KPPYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 81 d~~---~~~~~~~v~~~~f--~~~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
|++ +|+.+|++|.+|| ++++|+||+|+ +.|| ++++||||+-
T Consensus 91 d~~~~~df~~~n~v~~~~f~~~~~~Part~v~-~~L~-~~~lVEIe~i 136 (141)
T 3i3f_A 91 TSLSDSEEARFNELYREVFCVPATRPCRCCVR-AQLQ-EGLLVEVVNV 136 (141)
T ss_dssp TTCCHHHHHHHHHHHHHHSCCGGGCCEEEEEE-EBCS-TTCSEEEEEE
T ss_pred CCccccCHHHHHHHHHHHhCCCCCCCcEEEEh-hhCC-CCCEEEEEEE
Confidence 999 9999999999999 45699999999 9999 9999999974
No 22
>3lme_A Possible translation initiation inhibitor; structural genomics, RPA2473, PSI-2, protein structure initiative; 2.74A {Rhodopseudomonas palustris} SCOP: d.79.1.0
Probab=100.00 E-value=4.7e-36 Score=207.18 Aligned_cols=110 Identities=25% Similarity=0.431 Sum_probs=102.7
Q ss_pred ccCCCCcceEEEECCEEEEccccccCCCCCcccccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHH-HHHH
Q psy1836 12 LVGSASAFQAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFA-TVNN 90 (127)
Q Consensus 12 ~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~-~~~~ 90 (127)
+.|.++||+++++|+++|+|||+|.|+.+|+++++.++|++++|+||+++|+++|++++||+|+++|++|+++|. .+|+
T Consensus 13 p~p~g~ys~av~~g~~lfvSGq~~~d~~~g~~~~~~~~Q~~~~l~ni~~~L~~aG~~l~~Vvk~~vyl~d~~d~~~~~n~ 92 (138)
T 3lme_A 13 ITPSGTWSIGARAGDFVFIGGMHGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNK 92 (138)
T ss_dssp CCCCSSCBSEEEETTEEEEEEEESBCTTTCCBCSSHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCCCCCCEEEECCEEEEeccCCcCCCCCcCCcCHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEECCHHHHHHHHHH
Confidence 456789999999999999999999999778888666899999999999999999999999999999999999996 7999
Q ss_pred HHHhhcCC-CCCccEEEEcCCCCCCCEEEEEec
Q psy1836 91 VYGQFFKP-PYPARSTFQVGKLPLIDFCLVVLG 122 (127)
Q Consensus 91 v~~~~f~~-~~Pa~t~v~V~~L~~~~~liEi~~ 122 (127)
+|.+||++ ++|+||+|+|+.|| ++++||||+
T Consensus 93 v~~~~f~~~~~PArt~v~V~~L~-~~~lVEIe~ 124 (138)
T 3lme_A 93 VQKDIWGDGPYPPRTVLQVPALD-QGDIAEIDG 124 (138)
T ss_dssp HHHHHHTTCCCCBEEEEECSCCG-GGCSEEEEE
T ss_pred HHHHHcCCCCCCCEEEEEcCcCC-CCCEEEEEE
Confidence 99999997 69999999999998 688999998
No 23
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium}
Probab=100.00 E-value=3.1e-35 Score=199.84 Aligned_cols=102 Identities=24% Similarity=0.312 Sum_probs=97.8
Q ss_pred CCCCcceEEEECCEEEEccccccCCCCCcccccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHHHHHHH
Q psy1836 14 GSASAFQAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVNNVYG 93 (127)
Q Consensus 14 ~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~~~v~~ 93 (127)
+.++||+++++|+++|+|||+|.|+ +|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+|++|.
T Consensus 10 ~~~~ys~av~~g~~lfvSGq~~~d~------~d~~~Q~~~~l~nl~~~L~~aG~~~~~Vvk~tvyl~d~~df~~~n~v~~ 83 (124)
T 3gtz_A 10 AEDRWSDVVIYNNTLWYTGVPENLD------ADAFEQTANTLAQIDAVLEKQGSSKSRILDATIFLSDKADFAAMNKAWD 83 (124)
T ss_dssp ECSSCEEEEEETTEEEEEECCSCTT------SCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHH
T ss_pred CCCCcCCEEEECCEEEEeccCCCCC------CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHH
Confidence 4578999999999999999999984 7999999999999999999999999999999999999999999999999
Q ss_pred hhcCC-CCCccEEEEcCCCCCCCEEEEEec
Q psy1836 94 QFFKP-PYPARSTFQVGKLPLIDFCLVVLG 122 (127)
Q Consensus 94 ~~f~~-~~Pa~t~v~V~~L~~~~~liEi~~ 122 (127)
+||++ ++|+||+|+ ++|+.|+++||||+
T Consensus 84 ~~f~~~~~Part~v~-~~L~~p~~lVEIe~ 112 (124)
T 3gtz_A 84 AWVVAGHAPVRCTVQ-AGLMNPKYKVEIKI 112 (124)
T ss_dssp HHSCTTCCCEEEEEE-CEESSTTCSEEEEE
T ss_pred HHhCCCCCCcEEEEe-cccCCCCCEEEEEE
Confidence 99994 699999999 89999999999998
No 24
>3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.7e-35 Score=205.71 Aligned_cols=113 Identities=24% Similarity=0.321 Sum_probs=102.8
Q ss_pred ccccccccc----cCCCCcceEEEECCEEEEccccccCCCCCcccccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEe
Q psy1836 4 MLHASLVSL----VGSASAFQAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79 (127)
Q Consensus 4 ~~~~~~~~~----~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl 79 (127)
|++++.+.. .+.++||+++++|+++|+|||+|.| +|+++|++++|+||+++|+++|++++||+|+++|+
T Consensus 1 m~~r~~i~~~~~~~~~~~YS~av~~G~~lfvSGq~~~~-------~d~~~Qt~~~l~ni~aiL~~aG~~l~dVvk~tvyl 73 (149)
T 3i7t_A 1 MASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSG-------DDIAAQTRDALRRIEIALGQAGATLADVVRTRIYV 73 (149)
T ss_dssp --CEEEECCCCHHHHHHTCCSEEEETTEEEEEEEECCS-------SSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEE
T ss_pred CCcceEecCCCCCCCCCCcCCEEEECCEEEEeccCCCC-------CCHHHHHHHHHHHHHHHHHHccCCHhHEEEEEEEE
Confidence 555554433 3567899999999999999999997 58999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 80 NDINDFATVNNVYGQFFKPPYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 80 ~d~~~~~~~~~v~~~~f~~~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
+|+++|+.++++|.+||++++|+||+|+|+.|+.|+++||||+-
T Consensus 74 ~d~~df~~~n~v~~~~f~~~~PArt~V~V~~L~~~~~lVEIe~i 117 (149)
T 3i7t_A 74 TDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEAD 117 (149)
T ss_dssp SCGGGHHHHHHHHHHHHTTTCCBCCEEECSCCSSTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCCceEEEEeccCCCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999973
No 25
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=100.00 E-value=2.2e-34 Score=196.58 Aligned_cols=106 Identities=22% Similarity=0.381 Sum_probs=99.3
Q ss_pred cccCCCCcceEEEECCEEEEccccccCCCCCcccccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHHHH
Q psy1836 11 SLVGSASAFQAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVNN 90 (127)
Q Consensus 11 ~~~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~~~ 90 (127)
...+.++||+++++|+++|+|||+|.|+ +|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+|+
T Consensus 13 ~~~~~~~ys~av~~g~~lfvSGq~~~d~------~d~~~Q~~~~l~nl~~~L~~aG~~l~~Vvk~tvyl~d~~df~~~n~ 86 (128)
T 3kjj_A 13 YFGTTPRYSEAVGANGLIFLSGMVPENG------ETAAEQTADVLAQIDRWLAECGSDKAHVLDAVIYLRDMGDYAEMNG 86 (128)
T ss_dssp EEEECSSCEEEEEETTEEEECCBCCSSC------SSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHH
T ss_pred ccCCCCCcCcEEEECCEEEEeecCCCCC------CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHH
Confidence 3457889999999999999999999984 7999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCC-CCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 91 VYGQFFKP-PYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 91 v~~~~f~~-~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
+|.+||++ ++|+||+++| .|..|+++||||+-
T Consensus 87 v~~~~f~~~~~PArt~v~v-~ll~~~~lVEIe~i 119 (128)
T 3kjj_A 87 VWDAWVAAGRTPARACVEA-RLARPEWRVEIKIT 119 (128)
T ss_dssp HHHHHSCTTCCCEEEEEEC-BCSSTTCCEEEEEE
T ss_pred HHHHHhCCCCCCCEEEEEc-cccCCCCEEEEEEE
Confidence 99999997 5999999998 67789999999984
No 26
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.4e-34 Score=196.00 Aligned_cols=104 Identities=26% Similarity=0.400 Sum_probs=98.0
Q ss_pred cCCCCcceEEEECCEEEEccccccCCCCCcccccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHHHHHH
Q psy1836 13 VGSASAFQAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVNNVY 92 (127)
Q Consensus 13 ~~~~~ys~av~~g~~v~iSG~~~~d~~~g~~~~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~~~v~ 92 (127)
.|.++||+++++|+++|+|||+|.|+ . +|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+|++|
T Consensus 6 ~~~~~ys~av~~g~~vfvSGq~~~d~-~----~d~~~Q~~~~l~ni~~~L~~aG~~~~~Vvk~tvyl~d~~df~~~n~v~ 80 (122)
T 3k12_A 6 EVVKRRAEMALHGNTVYIGGQVADDP-S----GDIQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVW 80 (122)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCSST-T----SCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHH
T ss_pred CCCCCcCCEEEECCEEEEeeccCCCC-C----CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCchHHHHHHHHH
Confidence 35678999999999999999999997 2 799999999999999999999999999999999999999999999999
Q ss_pred HhhcCC-CCCccEEEEcCCCCCCCEEEEEec
Q psy1836 93 GQFFKP-PYPARSTFQVGKLPLIDFCLVVLG 122 (127)
Q Consensus 93 ~~~f~~-~~Pa~t~v~V~~L~~~~~liEi~~ 122 (127)
.+||++ ++|+||+|+ ..|..|+++||||+
T Consensus 81 ~~~f~~~~~Part~v~-~~ll~~~~lVEIe~ 110 (122)
T 3k12_A 81 DQWFPEGRAPTRACSL-AELIDPRWRVEMIV 110 (122)
T ss_dssp TTTSCTTCCCEEEEEE-CBCSSTTCSEEEEE
T ss_pred HHHhCCCCCCCEEEEE-cccCCCCCEEEEEE
Confidence 999996 699999999 56888999999998
No 27
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1
Probab=100.00 E-value=5.7e-34 Score=194.08 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=97.3
Q ss_pred cCCC-CcceEEEECCEEEEccccccCCCCCcccccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHHHHH
Q psy1836 13 VGSA-SAFQAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVNNV 91 (127)
Q Consensus 13 ~~~~-~ys~av~~g~~v~iSG~~~~d~~~g~~~~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~~~v 91 (127)
.+.+ +||+++++|+++|+|||+|.-+ +|+++|++++|+||+++|+++|++++||+|+++|++|+++|+.+|++
T Consensus 9 ~~~~~~ys~av~~g~~l~vSGq~~~~~------~d~~~Q~~~~l~ni~~~L~~aG~~l~~Vvk~~vyl~d~~df~~~n~v 82 (126)
T 2ewc_A 9 VNEDRGHTGLVEAGDFYYLNYCVGNVG------QDIESQINGAFDEMERRLALVGLTLDAVVQMDCLFRDVWNIPVMEKM 82 (126)
T ss_dssp EETTTTEEEEEEETTEEEEEEECCSTT------SCHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESSGGGHHHHHHH
T ss_pred CCCCCCcccEEEECCEEEEeCcCCCCC------cCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECChhHHHHHHHH
Confidence 3455 8999999999999999988632 79999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCccEEEEcCCCCC---CCEEEEEecc
Q psy1836 92 YGQFFKPPYPARSTFQVGKLPL---IDFCLVVLGG 123 (127)
Q Consensus 92 ~~~~f~~~~Pa~t~v~V~~L~~---~~~liEi~~~ 123 (127)
|.+||++++|+||+++|..||. |+++||||+-
T Consensus 83 ~~~~f~~~~Part~v~v~~l~~~~~~~~lVEIe~i 117 (126)
T 2ewc_A 83 IKERFNGRYPARKSIQTEFAHHGGPQGLLFQVDGV 117 (126)
T ss_dssp HHHHSTTCCCEEEEEECCCSSCCSTTCCCEEEEEE
T ss_pred HHHHcCCCCCcEEEEEccCccCCCCCCcEEEEEEE
Confidence 9999999999999999987775 8999999974
No 28
>2otm_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.85A {Shewanella oneidensis} SCOP: d.79.1.1
Probab=100.00 E-value=2.7e-33 Score=196.55 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=99.2
Q ss_pred cccCCCCcceEEEECCEEEEccccccCCC----CCccc-----ccHHHHHHHHHHHHHHHHHHcCCCccc---eEEEEEE
Q psy1836 11 SLVGSASAFQAVQHDNTLYISGVLGIDAS----SGKMA-----EGVENQAKQALTNMGHILKEAGGSYEH---VVKTTIL 78 (127)
Q Consensus 11 ~~~~~~~ys~av~~g~~v~iSG~~~~d~~----~g~~~-----~d~~~Q~~~~~~ni~~~L~~~G~~~~~---vv~~~vy 78 (127)
.+.|.++|||++++|+++|+|||+|+|+. +|++. +|+++|++++|+||+++|+++|+++++ |+|+|+|
T Consensus 20 ~~~~~g~Ys~av~~g~~v~vSGQ~~~~~~~~~~~G~~~~~~~~~~~~~Qa~~~~~Ni~a~L~~ag~~l~~~~~VVk~tvy 99 (154)
T 2otm_A 20 VAAALGNYEPYSIVGSQLMTSGQFPYLQGKLLYQGQLGADYTVSEGYAACRLATLNAIAQLKQACGELSRIKQIYRLEGV 99 (154)
T ss_dssp CCCCSSSSCSEEEETTEEEECCBCCEETTEECCBSCBTTTBCHHHHHHHHHHHHHHHHHHHHHHHSSGGGCCEEEEEEEE
T ss_pred CCCCCCCCcCEEEECCEEEEeccCCCCCCcccccccccCccCchhHHHHHHHHHHHHHHHHHHcCCCccccCcEEEEEEE
Confidence 34567889999999999999999999984 36664 579999999999999999999999886 9999999
Q ss_pred eCCCCCHHHH-------HHHHHhhcCCC-CCccEEEEcCCCCCCCEEEEEecc
Q psy1836 79 LNDINDFATV-------NNVYGQFFKPP-YPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 79 l~d~~~~~~~-------~~v~~~~f~~~-~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
++|+++|+.+ +++|.+||++. +||||+++|+.|| ++++||||+-
T Consensus 100 v~d~~df~~~~~v~~~~~~~~~~~fg~~~~PArt~v~V~~Lp-~~~~VEIEai 151 (154)
T 2otm_A 100 LNVHQSCIEHPKALDGASDLLLEIFGEAGRHSRMIWTNPVMP-LNSLCLVYLF 151 (154)
T ss_dssp ECBCTTCCCHHHHHHHHHHHHHHHHGGGGCCEEEEEECSSCG-GGBSEEEEEE
T ss_pred ECCcHHHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEccccC-CCCEEEEEEE
Confidence 9999887654 69999999974 9999999999998 5899999974
No 29
>3d01_A Uncharacterized protein; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; HET: PG5; 1.70A {Agrobacterium tumefaciens str}
Probab=99.98 E-value=6.6e-33 Score=196.57 Aligned_cols=111 Identities=20% Similarity=0.293 Sum_probs=98.8
Q ss_pred ccCCCCcceEEEECCEEEEccccccCCC----CCccc-----ccHHHHHHHHHHHHHHHHHHcC-CCcc---ceEEEEEE
Q psy1836 12 LVGSASAFQAVQHDNTLYISGVLGIDAS----SGKMA-----EGVENQAKQALTNMGHILKEAG-GSYE---HVVKTTIL 78 (127)
Q Consensus 12 ~~~~~~ys~av~~g~~v~iSG~~~~d~~----~g~~~-----~d~~~Q~~~~~~ni~~~L~~~G-~~~~---~vv~~~vy 78 (127)
+.|.++|||++++|+++|+|||+|.|+. +|+++ +|+++|++++|+||+++|+++| ++++ ||+|+++|
T Consensus 29 p~p~g~Ys~av~~g~~lfvSGq~~~~~~~~~~~G~~~~~~~~~d~~~Qa~~~l~ni~~~L~~ag~~~l~~v~~Vvk~tvy 108 (165)
T 3d01_A 29 AAPAANYVPFTISGNLLYVSGQLPMESGKIAVTGLVGRDVDVASAQRAAELCAVNILAQVKAALNGDLSKIRRVIKLNGF 108 (165)
T ss_dssp -----CBCSEEEETTEEEEEEECCEETTEECSBSCBTTTBCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGCCEEEEEEEE
T ss_pred CCCCCCccCEEEECCEEEEeeECCCCCCCccccccccCccCcccHHHHHHHHHHHHHHHHHHhCCCChhhhCCEEEEEEE
Confidence 3467889999999999999999999984 48886 5999999999999999999999 9999 99999999
Q ss_pred eCCCCCHHH----HH---HHHHhhcCC-CCCccEEEEcCCCCCCCEEEEEecc
Q psy1836 79 LNDINDFAT----VN---NVYGQFFKP-PYPARSTFQVGKLPLIDFCLVVLGG 123 (127)
Q Consensus 79 l~d~~~~~~----~~---~v~~~~f~~-~~Pa~t~v~V~~L~~~~~liEi~~~ 123 (127)
++|+++|+. +| ++|.+||++ ++|+||+|+|+.|| ++++||||+-
T Consensus 109 v~d~~df~~~~~v~ngas~~~~~~f~~~~~PArt~V~V~~Lp-~~~~VEIe~i 160 (165)
T 3d01_A 109 VASVPEFVEQHLVINGASNLIATVLGEPGRHARAAVGMASLP-FNASVEIDAI 160 (165)
T ss_dssp EEBCTTCCCHHHHHHHHHHHHHHHHCGGGCBEEEEEEESBCG-GGBSEEEEEE
T ss_pred ECCHHHhhHHHHHhhhHHHHHHHHhCCCCCCceEEEEcccCC-CCCEEEEEEE
Confidence 999999877 67 999999998 59999999999998 5999999974
No 30
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=55.10 E-value=22 Score=24.41 Aligned_cols=27 Identities=7% Similarity=-0.093 Sum_probs=18.0
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHhhcCC
Q psy1836 72 VVKTTILLNDINDFATVNNVYGQFFKP 98 (127)
Q Consensus 72 vv~~~vyl~d~~~~~~~~~v~~~~f~~ 98 (127)
+-++.+.+-|.+++..+.+.+.++|+.
T Consensus 151 ~~~V~~v~~~~~~~~~~~~~l~~~~~~ 177 (184)
T 1spv_A 151 PEQVYFVCYDEENAHLYERLLTQQGDE 177 (184)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHCC---
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCc
Confidence 345666666777888888888888874
No 31
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=49.05 E-value=11 Score=26.12 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC
Q psy1836 47 VENQAKQALTNMGHILKEAGGS 68 (127)
Q Consensus 47 ~~~Q~~~~~~ni~~~L~~~G~~ 68 (127)
-++|++.+++++...|++.|..
T Consensus 72 S~~~~~~a~~~i~~~L~~lG~~ 93 (182)
T 1ais_A 72 SVQDIERAVAKLAQKLKSIGVK 93 (182)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCC
Confidence 4579999999999999999986
No 32
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=48.79 E-value=15 Score=25.91 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=26.7
Q ss_pred EEEEccccccCCCCCcccccHHHHHHHHHHHHHHHHHHcCCC
Q psy1836 27 TLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGS 68 (127)
Q Consensus 27 ~v~iSG~~~~d~~~g~~~~d~~~Q~~~~~~ni~~~L~~~G~~ 68 (127)
+||.||-+-... .--++|++.+++++..+|+..|..
T Consensus 62 lIF~SGKiv~TG------akS~e~a~~a~~~i~~~L~~lG~~ 97 (198)
T 1mp9_A 62 LIFKSGKMVVTG------AKSTDELIKAVKRIIKTLKKYGMQ 97 (198)
T ss_dssp EECTTSEEEEEC------CSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEeCCCeEEEec------cCCHHHHHHHHHHHHHHHHHcCCc
Confidence 566666554422 234579999999999999999986
No 33
>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} SCOP: d.79.1.2
Probab=44.94 E-value=68 Score=21.56 Aligned_cols=35 Identities=9% Similarity=0.305 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEEeC-CCC-CHHHH
Q psy1836 54 ALTNMGHILKEAGGSYEHVVKTTILLN-DIN-DFATV 88 (127)
Q Consensus 54 ~~~ni~~~L~~~G~~~~~vv~~~vyl~-d~~-~~~~~ 88 (127)
+-+=++.+++..+.+.+||+.+..-+| |++ .||+.
T Consensus 53 t~ELl~eii~~N~l~~eDIvSv~FTvT~DL~A~FPA~ 89 (148)
T 1xho_A 53 TQKLLKEMAEKNGLEEDDIISIIFTVTKDLDAAFPAI 89 (148)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEEECTTCCSSCTHH
T ss_pred HHHHHHHHHHHcCCCHHHEEEEEEEeCCccCccChHH
Confidence 444567889999999999999999988 554 57654
No 34
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=42.49 E-value=28 Score=21.60 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccce
Q psy1836 48 ENQAKQALTNMGHILKEAGGSYEHV 72 (127)
Q Consensus 48 ~~Q~~~~~~ni~~~L~~~G~~~~~v 72 (127)
++|.....+++..++.+.|+....+
T Consensus 58 ee~~~~~ve~~~~iI~~~gG~i~~v 82 (96)
T 2kjw_A 58 QSQLALEKEIIQRALENYGARVEKV 82 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSCC
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6899999999999999999876553
No 35
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=41.80 E-value=60 Score=23.07 Aligned_cols=52 Identities=6% Similarity=0.046 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHcC-CCccceEEEEEEeCCCCCHHHHHHHHHhhcCCC
Q psy1836 47 VENQAKQALTNMGHILKEAG-GSYEHVVKTTILLNDINDFATVNNVYGQFFKPP 99 (127)
Q Consensus 47 ~~~Q~~~~~~ni~~~L~~~G-~~~~~vv~~~vyl~d~~~~~~~~~v~~~~f~~~ 99 (127)
.++-++.+++.+...|++.. .+++. |.+.+|=.|.+.+..+.+.+.++|+..
T Consensus 166 ~~~aA~i~~~~v~~fl~~~~~~~l~~-V~fv~f~~d~~~~~~f~~~l~~r~~~~ 218 (221)
T 3q71_A 166 KNIFAELIISEVFKFSSKNQLKTLQE-VHFLLHPSDHENIQAFSDEFARRANGN 218 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSCCE-EEEEECTTCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCE-EEEEEeCCCHHHHHHHHHHHHHHccCC
Confidence 34444455555555555543 22332 233333334455688888888888754
No 36
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=40.88 E-value=60 Score=23.24 Aligned_cols=27 Identities=15% Similarity=0.050 Sum_probs=19.9
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHhhcCC
Q psy1836 72 VVKTTILLNDINDFATVNNVYGQFFKP 98 (127)
Q Consensus 72 vv~~~vyl~d~~~~~~~~~v~~~~f~~ 98 (127)
+-++.+.+-+.++++.+.+.+.+||+.
T Consensus 208 l~~V~fv~f~~~~~~~y~~~l~~~fp~ 234 (235)
T 2x47_A 208 VDRLIICVFLEKDEDIYRSRLPHYFPV 234 (235)
T ss_dssp CSEEEEEECSHHHHHHHHHHHHHHSCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcCC
Confidence 435555566778888999999898863
No 37
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=38.66 E-value=64 Score=24.23 Aligned_cols=51 Identities=10% Similarity=0.109 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeC-CCCCHHHHHHHHHhhcCCC
Q psy1836 47 VENQAKQALTNMGHILKEAGGSYEHVVKTTILLN-DINDFATVNNVYGQFFKPP 99 (127)
Q Consensus 47 ~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~-d~~~~~~~~~v~~~~f~~~ 99 (127)
++..++.+++.++..|+.+|.+.++|-. ++++ .....+.+.+...++|+..
T Consensus 320 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~--V~LvGG~s~~p~v~~~l~~~f~~~ 371 (409)
T 4gni_A 320 ARTVFEGFNRLVESAVKKAGLDPLDVDE--VIMSGGTSNTPRIAANFRYIFPES 371 (409)
T ss_dssp THHHHHHHHHHHHHHHHHTTCCGGGCCE--EEEESGGGGCHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCE--EEEECCccccHHHHHHHHHHcCCc
Confidence 4456677888888999999998888743 5555 4567899999999999864
No 38
>1dbf_A Protein (chorismate mutase); shikimate pathway, isomerase; 1.30A {Bacillus subtilis} SCOP: d.79.1.2 PDB: 1com_A 2chs_A 2cht_A* 1fnj_A 1fnk_A
Probab=38.01 E-value=84 Score=20.58 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEEeC-CCC-CHHHH
Q psy1836 54 ALTNMGHILKEAGGSYEHVVKTTILLN-DIN-DFATV 88 (127)
Q Consensus 54 ~~~ni~~~L~~~G~~~~~vv~~~vyl~-d~~-~~~~~ 88 (127)
+-+=++.+++..+.+.+||+++..-+| |+. .|++.
T Consensus 24 t~eLl~~i~~~N~l~~~dIvSv~FT~T~DL~a~FPA~ 60 (127)
T 1dbf_A 24 TKQLLEKIIEENHTKPEDVVQMLLSATPDLHAVFPAK 60 (127)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEEECTTCCSSCTHH
T ss_pred HHHHHHHHHHHcCCCHHHEEEEEEEeCCccCccChHH
Confidence 444567889999999999999999988 553 57654
No 39
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=37.91 E-value=33 Score=20.29 Aligned_cols=20 Identities=15% Similarity=0.229 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHcCC
Q psy1836 48 ENQAKQALTNMGHILKEAGG 67 (127)
Q Consensus 48 ~~Q~~~~~~ni~~~L~~~G~ 67 (127)
++|...+++.++.++++.|+
T Consensus 58 ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 58 QSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 46999999999999999875
No 40
>3r8n_F 30S ribosomal protein S6; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_F 3fih_F* 3iy8_F 3j18_F* 2wwl_F 3oar_F 3oaq_F 3ofb_F 3ofa_F 3ofp_F 3ofx_F 3ofy_F 3ofo_F 3r8o_F 4a2i_F 4gd1_F 4gd2_F 2gy9_F 2gyb_F
Probab=37.37 E-value=18 Score=22.44 Aligned_cols=28 Identities=11% Similarity=0.149 Sum_probs=23.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCccce
Q psy1836 45 EGVENQAKQALTNMGHILKEAGGSYEHV 72 (127)
Q Consensus 45 ~d~~~Q~~~~~~ni~~~L~~~G~~~~~v 72 (127)
++..+|+..+++++..++.+.|+...++
T Consensus 12 p~~~e~~~~~~~~~~~~i~~~gg~i~~~ 39 (100)
T 3r8n_F 12 PDQSEQVPGMIERYTAAITGAEGKIHRL 39 (100)
T ss_dssp GGGTTHHHHHHHHHHHHHHTTTCBCCCC
T ss_pred CCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3455799999999999999999876654
No 41
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=34.63 E-value=39 Score=20.76 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=22.8
Q ss_pred ccH-HHHHHHHHHHHHHHHHHcCCCccce
Q psy1836 45 EGV-ENQAKQALTNMGHILKEAGGSYEHV 72 (127)
Q Consensus 45 ~d~-~~Q~~~~~~ni~~~L~~~G~~~~~v 72 (127)
+++ ++|+..+++++..++.+.|+...++
T Consensus 15 p~~~~e~~~~~~~~~~~~i~~~gg~i~~~ 43 (99)
T 3r3t_A 15 PGVEEEAQKALVERFAGVLTNNGAEIINT 43 (99)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 344 6899999999999999999866543
No 42
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=33.96 E-value=41 Score=20.26 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcc
Q psy1836 48 ENQAKQALTNMGHILKEAGGSYE 70 (127)
Q Consensus 48 ~~Q~~~~~~ni~~~L~~~G~~~~ 70 (127)
.+|+++.+..+-.+|+....+.+
T Consensus 9 d~qvE~ll~eli~VLEKH~Ap~D 31 (80)
T 2juz_A 9 DAQLSAIVNDMIAVLEKHKAPVD 31 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcc
Confidence 37999999999999999987654
No 43
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=33.26 E-value=38 Score=20.17 Aligned_cols=23 Identities=4% Similarity=0.186 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcc
Q psy1836 48 ENQAKQALTNMGHILKEAGGSYE 70 (127)
Q Consensus 48 ~~Q~~~~~~ni~~~L~~~G~~~~ 70 (127)
.+|+++.+..+-.+|+....+.+
T Consensus 9 d~qvE~ll~eli~VLEKH~Ap~D 31 (76)
T 2jr2_A 9 NERVEKIIQDLLDVLVKEEVTPD 31 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcc
Confidence 37999999999999999987644
No 44
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=32.94 E-value=40 Score=20.27 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcc
Q psy1836 48 ENQAKQALTNMGHILKEAGGSYE 70 (127)
Q Consensus 48 ~~Q~~~~~~ni~~~L~~~G~~~~ 70 (127)
.+|+++.+..+-.+|+....+.+
T Consensus 9 d~qvE~ll~eli~VLEKH~Ap~D 31 (80)
T 2juw_A 9 NTQVESLIAEILVVLEKHKAPTD 31 (80)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcc
Confidence 37999999999999999987644
No 45
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=32.25 E-value=42 Score=20.32 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcc
Q psy1836 48 ENQAKQALTNMGHILKEAGGSYE 70 (127)
Q Consensus 48 ~~Q~~~~~~ni~~~L~~~G~~~~ 70 (127)
.+|+++.+..+-.+|+....+.+
T Consensus 9 d~qvE~ll~eli~VLEKH~Ap~D 31 (83)
T 2jpq_A 9 DEQVEKILAEVALVLEKHAASPE 31 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcc
Confidence 37999999999999999987654
No 46
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=31.20 E-value=21 Score=24.96 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC
Q psy1836 47 VENQAKQALTNMGHILKEAGGS 68 (127)
Q Consensus 47 ~~~Q~~~~~~ni~~~L~~~G~~ 68 (127)
-++|++.+.+++..+|+..|..
T Consensus 76 S~e~a~~a~~~~~~~L~~lg~~ 97 (188)
T 2z8u_A 76 SKEEAEIAIKKIIKELKDAGID 97 (188)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHhcCCC
Confidence 4579999999999999999975
No 47
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=31.15 E-value=42 Score=20.30 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcc
Q psy1836 48 ENQAKQALTNMGHILKEAGGSYE 70 (127)
Q Consensus 48 ~~Q~~~~~~ni~~~L~~~G~~~~ 70 (127)
.+|+++.+..+-.+|+....+.+
T Consensus 9 d~qvE~ll~eli~VLEKH~Ap~D 31 (83)
T 2jrx_A 9 DEQVEQLLAELLNVLEKHKAPTD 31 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcc
Confidence 47999999999999999987654
No 48
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=30.61 E-value=44 Score=20.36 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCcc------ceEEEEEEeCCC----C---CHHHHHHHHHhhcCC
Q psy1836 45 EGVENQAKQALTNMGHILKEAGGSYE------HVVKTTILLNDI----N---DFATVNNVYGQFFKP 98 (127)
Q Consensus 45 ~d~~~Q~~~~~~ni~~~L~~~G~~~~------~vv~~~vyl~d~----~---~~~~~~~v~~~~f~~ 98 (127)
.+..++++.+++.|+-.|++-|++.+ .+|+++.-=.-- + -...+.+..++++++
T Consensus 6 ~~~~~~I~~~L~~IRP~L~~dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPe 72 (88)
T 1xhj_A 6 PTMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPG 72 (88)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhcHHHHhcCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCC
Confidence 57889999999999999999998654 233333221111 1 124667777777743
No 49
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}
Probab=30.59 E-value=62 Score=22.82 Aligned_cols=26 Identities=8% Similarity=0.072 Sum_probs=16.4
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHhhcC
Q psy1836 72 VVKTTILLNDINDFATVNNVYGQFFK 97 (127)
Q Consensus 72 vv~~~vyl~d~~~~~~~~~v~~~~f~ 97 (127)
+-++.+..-|.+++..+.+.+.++|.
T Consensus 189 l~~V~fv~~d~~~~~~f~~~l~~~f~ 214 (214)
T 3q6z_A 189 LKEIYLVDVSEKTVEAFAEAVKTVFK 214 (214)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHC-
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhhC
Confidence 33445555566677777777777773
No 50
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=30.56 E-value=44 Score=20.57 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccce
Q psy1836 48 ENQAKQALTNMGHILKEAGGSYEHV 72 (127)
Q Consensus 48 ~~Q~~~~~~ni~~~L~~~G~~~~~v 72 (127)
++|.....+++..+|.+.|+...++
T Consensus 16 ~e~~~~~~~~~~~~i~~~gg~i~~~ 40 (101)
T 1cqm_A 16 QSQLALEKEIIQRALENYGARVEKV 40 (101)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 6899999999999999999865543
No 51
>1rki_A Hypothetical protein; structural genomics, (beta-alpha-beta)X2, beta-loop-beta-BET motif, unknown function; HET: P6G PG4; 1.60A {Pyrobaculum aerophilum} SCOP: d.308.1.2
Probab=30.37 E-value=60 Score=20.17 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=18.6
Q ss_pred ccCCCCcceEEEECCEEEEccc
Q psy1836 12 LVGSASAFQAVQHDNTLYISGV 33 (127)
Q Consensus 12 ~~~~~~ys~av~~g~~v~iSG~ 33 (127)
..|+..++.++++|+..|++--
T Consensus 76 s~Psc~~crvv~iG~~yFv~~~ 97 (102)
T 1rki_A 76 SKPNCDKCLIVEIGGVYFVRRV 97 (102)
T ss_dssp SCCCCSSEEEEEETTEEEEEEC
T ss_pred cCCCCCceEEEEEcCEEEEEec
Confidence 3577889999999999999843
No 52
>1ufy_A Chorismate mutase; shikimate pathway, mutant, riken structur genomics/proteomics initiative, RSGI, structural genomics,; HET: MES; 0.96A {Thermus thermophilus} SCOP: d.79.1.2 PDB: 1ode_A* 1ui9_A*
Probab=30.14 E-value=1.1e+02 Score=19.78 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCCc-cceEEEEEEeC-CCC-CHHHH
Q psy1836 54 ALTNMGHILKEAGGSY-EHVVKTTILLN-DIN-DFATV 88 (127)
Q Consensus 54 ~~~ni~~~L~~~G~~~-~~vv~~~vyl~-d~~-~~~~~ 88 (127)
+-+=++.+++..+.+. +||+++..-+| |+. .||+.
T Consensus 23 t~eLl~~i~~~N~l~~~~divSv~FT~T~DL~a~FPA~ 60 (122)
T 1ufy_A 23 TRELLLKMLEANGIQSYEELAAVIFTVTEDLTSAFPAE 60 (122)
T ss_dssp HHHHHHHHHHHHTCCCGGGEEEEEEEECTTCCSCCHHH
T ss_pred HHHHHHHHHHhcCCCChHhEEEEEEEeCCccCccChHH
Confidence 4445678899999999 99999999988 554 57654
No 53
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=29.04 E-value=1e+02 Score=22.99 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCC-CCCHHHHHHHHHhhcCC
Q psy1836 47 VENQAKQALTNMGHILKEAGGSYEHVVKTTILLND-INDFATVNNVYGQFFKP 98 (127)
Q Consensus 47 ~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d-~~~~~~~~~v~~~~f~~ 98 (127)
++...+.+++.++..|+.++...++|-. |+++. ....+.+.+...++|++
T Consensus 327 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~--VvLvGG~s~~p~l~~~l~~~~~~ 377 (404)
T 3i33_A 327 NADLFRGTLEPVEKALRDAKLDKGQIQE--IVLVGGSTRIPKIQKLLQDFFNG 377 (404)
T ss_dssp THHHHHHTHHHHHHHHHHHTCCGGGCCE--EEEESGGGGCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHhhCCE--EEEECCccccHHHHHHHHHHcCC
Confidence 3445667788889999999998888733 55554 56789999999999954
No 54
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=27.09 E-value=50 Score=22.80 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC
Q psy1836 47 VENQAKQALTNMGHILKEAGGS 68 (127)
Q Consensus 47 ~~~Q~~~~~~ni~~~L~~~G~~ 68 (127)
-+++++.+++++...|++.|..
T Consensus 68 s~e~~~~a~~~i~~~L~~lg~~ 89 (180)
T 1ytb_A 68 SEDDSKLASRKYARIIQKIGFA 89 (180)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCC
Confidence 4578999999999999999974
No 55
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=27.00 E-value=1.7e+02 Score=20.77 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCHHHHHHHHHhhcC
Q psy1836 47 VENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVNNVYGQFFK 97 (127)
Q Consensus 47 ~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~~~~~~v~~~~f~ 97 (127)
..++.+.+++.++..|...|. +.+.++-.|..+|...-.-..+.+.
T Consensus 45 ~~~~~~~A~~~i~~~l~~~~~-----i~~e~~~vd~~df~~~v~~i~~~i~ 90 (244)
T 2wte_A 45 IVSGTRAAIESLRAQISRLNY-----PPPRIYEIEITDFNLALSKILDIIL 90 (244)
T ss_dssp CCHHHHHHHHHHHHHHHHHTC-----CCEEEEEECCCSHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHcCC-----CceEEEEECCccHHHHHHHHHHHHh
Confidence 357999999999999999943 1233444477787665444444433
No 56
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=25.71 E-value=1.6e+02 Score=21.67 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeC-CCCCHHHHHHHHHhhcCC
Q psy1836 47 VENQAKQALTNMGHILKEAGGSYEHVVKTTILLN-DINDFATVNNVYGQFFKP 98 (127)
Q Consensus 47 ~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~-d~~~~~~~~~v~~~~f~~ 98 (127)
++...+.+++.++..|+.++.+.++|- .++++ .....+.+.+...++|++
T Consensus 319 ~~~~~~~i~~~i~~~l~~~~~~~~~i~--~VvLvGG~s~~p~l~~~l~~~~~~ 369 (394)
T 3qfu_A 319 NLDLFKKTLKPVEKVLQDSGLEKKDVD--DIVLVGGSTRIPKVQQLLESYFDG 369 (394)
T ss_dssp HHHHHHHTHHHHHHHHHHHTCCGGGCC--EEEEESGGGGSHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCC--EEEEECCccccHHHHHHHHHHcCC
Confidence 344566777788889999999877773 45555 456789999999999953
No 57
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=25.14 E-value=42 Score=18.71 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCCccc
Q psy1836 56 TNMGHILKEAGGSYEH 71 (127)
Q Consensus 56 ~ni~~~L~~~G~~~~~ 71 (127)
++|+++|+++|...++
T Consensus 20 ~~I~~il~aaGveve~ 35 (58)
T 3a1y_A 20 ENLKAVLQAAGVEPEE 35 (58)
T ss_dssp HHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHcCCCccH
Confidence 5789999999987664
No 58
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=25.02 E-value=70 Score=23.17 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=25.7
Q ss_pred EEEEccccccCCCCCcccccHHHHHHHHHHHHHHHHHHcCCC
Q psy1836 27 TLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGS 68 (127)
Q Consensus 27 ~v~iSG~~~~d~~~g~~~~d~~~Q~~~~~~ni~~~L~~~G~~ 68 (127)
+||.||-+-+.. .--+++++.+++++..+|++.|..
T Consensus 114 lIF~SGKiV~TG------aks~e~a~~A~~~i~~~L~~lg~~ 149 (240)
T 1rm1_A 114 LIFASGKMVVTG------AKSEDDSKLASRKYARIIQKIGFA 149 (240)
T ss_dssp EEETTSEEEEEE------ESSHHHHHHHHHHHHHHHHHHTCC
T ss_pred EEECCCeEEEEe------cCCHHHHHHHHHHHHHHHHHcCCC
Confidence 667666544321 234578999999999999999974
No 59
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=24.26 E-value=1.1e+02 Score=22.75 Aligned_cols=44 Identities=11% Similarity=-0.027 Sum_probs=32.2
Q ss_pred Cccc-ccHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEeCCCCCH
Q psy1836 41 GKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDF 85 (127)
Q Consensus 41 g~~~-~d~~~Q~~~~~~ni~~~L~~~G~~~~~vv~~~vyl~d~~~~ 85 (127)
|.++ ...+...+....-|+.+|+++|.+++||-.+-+. .....|
T Consensus 42 Gv~p~~a~~~H~~~l~~~i~~~L~~ag~~~~did~Iav~-~gPG~~ 86 (334)
T 3eno_A 42 GIRPLDAAVHHSEVIDTVISRALEKAKISIHDIDLIGFS-MGPGLA 86 (334)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCEEEEE-CSSSCH
T ss_pred CcCcchHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-cCCCCc
Confidence 3344 3356788889999999999999999998666544 344443
No 60
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=24.00 E-value=63 Score=23.11 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcc
Q psy1836 47 VENQAKQALTNMGHILKEAGGSYE 70 (127)
Q Consensus 47 ~~~Q~~~~~~ni~~~L~~~G~~~~ 70 (127)
-+++++.+++++...|++.|....
T Consensus 106 S~e~a~~A~~ki~~~L~~lG~~v~ 129 (218)
T 3eik_A 106 SEKSSRMAAQRYAKIIHKLGFNAT 129 (218)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcc
Confidence 468899999999999999997443
No 61
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=23.82 E-value=49 Score=19.17 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCCccc
Q psy1836 56 TNMGHILKEAGGSYEH 71 (127)
Q Consensus 56 ~ni~~~L~~~G~~~~~ 71 (127)
++|+++|+++|...++
T Consensus 26 ~~I~~il~AaGveve~ 41 (69)
T 2lbf_A 26 DKINALIKAAGVNVEP 41 (69)
T ss_dssp HHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHcCCCccH
Confidence 6789999999987665
No 62
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=22.88 E-value=67 Score=14.66 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=12.1
Q ss_pred ccHHHHHHHHHHHHHH
Q psy1836 45 EGVENQAKQALTNMGH 60 (127)
Q Consensus 45 ~d~~~Q~~~~~~ni~~ 60 (127)
+++++|...+++.+..
T Consensus 8 e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 8 EDMQRQWAGLVEKVQA 23 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6788888888877764
No 63
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=22.67 E-value=57 Score=20.40 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccc
Q psy1836 48 ENQAKQALTNMGHILKEAGGSYEH 71 (127)
Q Consensus 48 ~~Q~~~~~~ni~~~L~~~G~~~~~ 71 (127)
++|...+++++..+|.+.|+...+
T Consensus 22 ~e~~~~~v~~~~~~i~~~Gg~i~~ 45 (110)
T 2j5a_A 22 EEEMKKKFEQVKEFIKQKGGEILY 45 (110)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEE
Confidence 578999999999999999975544
No 64
>3nuf_A PRD-containing transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 1.38A {Lactobacillus casei}
Probab=22.42 E-value=98 Score=20.03 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=28.1
Q ss_pred cccccCCCCCccc---------ccHHHHHHHHHHHHHHHHHHcCCCccce
Q psy1836 32 GVLGIDASSGKMA---------EGVENQAKQALTNMGHILKEAGGSYEHV 72 (127)
Q Consensus 32 G~~~~d~~~g~~~---------~d~~~Q~~~~~~ni~~~L~~~G~~~~~v 72 (127)
|+.+.|. +-+++ ....+=+...++.+...+++.|..++++
T Consensus 1 ~~~~~~~-~~~~~~e~~~~i~~s~~~~~~~~ll~~i~~ll~~~~I~~~~v 49 (119)
T 3nuf_A 1 GMTPLDA-NVELPTEVKAMIEQSSDAQAATALVNYVIKLAAAAEIHFTDL 49 (119)
T ss_dssp -CCCCCC-CCCCCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred CCCchhh-hccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 4566665 55554 2233446789999999999999988875
No 65
>2wkn_A Formamidase, gamma-lactamase; hydrolase, biocatalysis; 2.08A {Delftia acidovorans}
Probab=21.30 E-value=1.4e+02 Score=23.26 Aligned_cols=45 Identities=29% Similarity=0.288 Sum_probs=34.4
Q ss_pred CCEEEEccccccCCCCCccc-ccHHHHHHHHHHHHHHHHHHcCCCccc
Q psy1836 25 DNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEH 71 (127)
Q Consensus 25 g~~v~iSG~~~~d~~~g~~~-~d~~~Q~~~~~~ni~~~L~~~G~~~~~ 71 (127)
.+++.+.|. +.|. +|+.. -|..+-+|+++.|+-..|...|++.++
T Consensus 303 ~~~li~~G~-~~d~-~g~~~~ld~~~A~r~A~~~~i~~L~~~Gls~~e 348 (409)
T 2wkn_A 303 KDYLIFEGI-SVDE-KGKQHYLDVTVAYRQACLNAIEYLKKFGYSGAQ 348 (409)
T ss_dssp CCEEEEEEE-SBCT-TCCBCSSCHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred CcEEEEEee-cccc-ccccccccHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 466666775 5555 56555 788899999999999999988887665
No 66
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=20.58 E-value=1.1e+02 Score=20.82 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=26.9
Q ss_pred ccCCCCCccc-ccHHHHHHHHHHHHHHHHHHcCC
Q psy1836 35 GIDASSGKMA-EGVENQAKQALTNMGHILKEAGG 67 (127)
Q Consensus 35 ~~d~~~g~~~-~d~~~Q~~~~~~ni~~~L~~~G~ 67 (127)
.+|. +|++. ++..++.+..++++...+++.|.
T Consensus 151 ~fd~-~G~l~de~~~~~l~~~~~~~~~~i~~~~~ 183 (190)
T 3u7r_A 151 AYAA-DGSVTDEKTAKFLQGFVDAFVDWIEKHGL 183 (190)
T ss_dssp GBCT-TSCBCSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHcCc
Confidence 4566 78887 77888999999999999998876
No 67
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=20.54 E-value=56 Score=19.03 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCCCccc
Q psy1836 56 TNMGHILKEAGGSYEH 71 (127)
Q Consensus 56 ~ni~~~L~~~G~~~~~ 71 (127)
++|+++|+++|...++
T Consensus 22 ~~I~~il~aaGvevd~ 37 (70)
T 2lbf_B 22 KDIKKILDSVGIEADD 37 (70)
T ss_dssp HHHHHHHHTTTCCCCT
T ss_pred HHHHHHHHHcCCCccH
Confidence 5789999999997765
Done!