RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1836
(127 letters)
>gnl|CDD|129116 TIGR00004, TIGR00004, reactive intermediate/imine deaminase. This
protein was described initially as an inhibitor of
protein synthesis intiation, then as an endoribonuclease
active on single-stranded mRNA, endoribonuclease L-PSP.
Members of this family, conserved in all domains of life
and often with several members per bacterial genome,
appear to catalyze a reaction that minimizes toxic
by-products from reactions catalyzed by pyridoxal
phosphate-dependent enzymes [Cellular processes, Other].
Length = 124
Score = 131 bits (331), Expect = 1e-40
Identities = 49/95 (51%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QAV+ NT+Y+SG + +D S+G++ G + QA+Q L N+ IL+ AG S + VVKTT+
Sbjct: 18 QAVKVGNTVYVSGQIPLDPSTGELVGGDIAEQAEQVLENLKAILEAAGLSLDDVVKTTVF 77
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
L D+NDFA VN VYGQ+F YPARS QV LP
Sbjct: 78 LTDLNDFAEVNEVYGQYFDEHYPARSAVQVAALPK 112
>gnl|CDD|100004 cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong
to a large family of proteins present in bacteria,
archaea, and eukaryotes with no definitive function. The
conserved domain is similar in structure to chorismate
mutase but there is no sequence similarity and no
functional connection. Members of this family have been
implicated in isoleucine (Yeo7, Ibm1, aldR) and purine
(YjgF) biosynthesis, as well as threonine anaerobic
degradation (tdcF) and mitochondrial DNA maintenance
(Ibm1). This domain homotrimerizes forming a distinct
intersubunit cavity that may serve as a small molecule
binding site.
Length = 107
Score = 116 bits (293), Expect = 4e-35
Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
QAV+ N +++SG + +D + +E Q +QAL N+ +L+ AGGS + VVK T+ L
Sbjct: 3 QAVRVGNLVFVSGQIPLDPDGELVPGDIEAQTRQALENLEAVLEAAGGSLDDVVKVTVYL 62
Query: 80 NDINDFATVNNVYGQFFK-PPYPARSTFQVGKLP 112
D+ DFA VN VY +FF P PAR+ V LP
Sbjct: 63 TDMADFAAVNEVYDEFFGEGPPPARTAVGVAALP 96
>gnl|CDD|216262 pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP. Endoribonuclease
active on single-stranded mRNA. Inhibits protein
synthesis by cleavage of mRNA. Previously thought to
inhibit protein synthesis initiation. This protein may
also be involved in the regulation of purine
biosynthesis.
Length = 120
Score = 114 bits (288), Expect = 3e-34
Identities = 46/96 (47%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QAV+ N +Y+SG + +D +G++ EG VE Q +Q N+ +L AG S VVKTTI
Sbjct: 13 QAVRVGNLVYVSGQIPLDPETGELVEGDVEEQTRQVFENLKAVLAAAGASLSDVVKTTIF 72
Query: 79 LNDINDFATVNNVYGQFFK-PPYPARSTFQVGKLPL 113
L D+NDFA VN VY ++F P PARS +V LPL
Sbjct: 73 LADMNDFAEVNEVYAEYFDAPKRPARSAVEVAALPL 108
>gnl|CDD|223329 COG0251, TdcF, Putative translation initiation inhibitor, yjgF
family [Translation, ribosomal structure and
biogenesis].
Length = 130
Score = 107 bits (269), Expect = 3e-31
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 20 QAVQHDNTLYISGVLGIDASSG-KMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QAV +++SG + +D + E +E Q +QAL N+ +L+ AG + + VVK T+
Sbjct: 21 QAVVAGGLVFVSGQIPLDPTGELVGGEDIEAQTRQALANIKAVLEAAGSTLDDVVKVTVF 80
Query: 79 LNDINDFATVNNVYGQFFK-PPYPARSTFQVGKLPL 113
L D+NDFA +N VY +FF+ YPARS V LP
Sbjct: 81 LTDMNDFAAMNEVYDEFFEVGGYPARSAVGVALLPP 116
>gnl|CDD|100011 cd06154, YjgF_YER057c_UK114_like_6, This group of proteins belong
to a large family of YjgF/YER057c/UK114-like proteins
present in bacteria, archaea, and eukaryotes with no
definitive function. The conserved domain is similar in
structure to chorismate mutase but there is no sequence
similarity and no functional connection. Members of this
family have been implicated in isoleucine (Yeo7, Ibm1,
aldR) and purine (YjgF) biosynthesis, as well as
threonine anaerobic degradation (tdcF) and mitochondrial
DNA maintenance (Ibm1). This domain homotrimerizes
forming a distinct intersubunit cavity that may serve as
a small molecule binding site.
Length = 119
Score = 80.3 bits (199), Expect = 1e-20
Identities = 31/92 (33%), Positives = 43/92 (46%)
Query: 21 AVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLN 80
AV+ N +++SG G D M Q +Q L + L EAG S E VV+T + +
Sbjct: 16 AVRVGNWVFVSGTTGYDYDGMVMPGDAYEQTRQCLEIIEAALAEAGASLEDVVRTRMYVT 75
Query: 81 DINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
DI DF V +G+ F PA + V L
Sbjct: 76 DIADFEAVGRAHGEVFGDIRPAATMVVVSLLV 107
>gnl|CDD|105214 PRK11401, PRK11401, putative endoribonuclease L-PSP; Provisional.
Length = 129
Score = 78.6 bits (193), Expect = 6e-20
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
Q V + ++ SG + + +G++ V++QA+ +L N+ I+ AG S ++K T+ +
Sbjct: 19 QGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFI 78
Query: 80 NDINDFATVNNVYGQFF---KPPYPARSTFQVGKLP 112
D+NDFAT+N VY QFF + YP RS QV +LP
Sbjct: 79 TDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLP 114
>gnl|CDD|100012 cd06155, eu_AANH_C_1, A group of hypothetical eukaryotic proteins,
characterized by the presence of an adenine nucleotide
alpha hydrolase (AANH)-like domain located N-terminal to
two distinctly different YjgF-YER057c-UK114-like
domains. This CD contains the first of these domains.
The YjgF-YER057c-UK114 protein family is a large family
of proteins present in bacteria, archaea, and eukaryotes
with no definitive function. The conserved domain is
similar in structure to chorismate mutase but there is
no sequence similarity and no functional connection.
Members of this family have been implicated in
isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF)
biosynthesis, as well as threonine anaerobic degradation
(tdcF) and mitochondrial DNA maintenance (Ibm1). This
domain homotrimerizes forming a distinct intersubunit
cavity that may serve as a small molecule binding site.
Length = 101
Score = 71.1 bits (175), Expect = 3e-17
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 26 NTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDF 85
L+IS V ++ + E VE Q + + + IL+ G S ++ T+ L D++DF
Sbjct: 8 GLLWISNV-----TASESDETVEEQMESIFSKLREILQSNGLSLSDILYVTLYLRDMSDF 62
Query: 86 ATVNNVYGQFFKPPYP-ARSTFQVGKLPLIDFCLVVLG 122
A VN+VYG FF P P +R + L + C V L
Sbjct: 63 AEVNSVYGTFFDKPNPPSRVCVE---CGLPEGCDVQLS 97
>gnl|CDD|100005 cd02198, YjgH_like, YjgH belongs to a large family of
YjgF/YER057c/UK114-like proteins present in bacteria,
archaea, and eukaryotes with no definitive function. The
conserved domain is similar in structure to chorismate
mutase but there is no sequence similarity and no
functional connection. Members of this family have been
implicated in isoleucine (Yeo7, Ibm1, aldR) and purine
(YjgF) biosynthesis, as well as threonine anaerobic
degradation (tdcF) and mitochondrial DNA maintenance
(Ibm1). This domain homotrimerizes forming a distinct
intersubunit cavity that may serve as a small molecule
binding site.
Length = 111
Score = 70.4 bits (173), Expect = 7e-17
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVK-TTIL 78
AV+ +TL++SG +G DA G +AE E Q + A N+G +L+ AG S++ VV+ TT
Sbjct: 5 PAVRVGDTLFVSGQVGSDAD-GSVAEDFEAQFRLAFQNLGAVLEAAGCSFDDVVELTTFH 63
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKL 111
++ V ++FK PYPA + V L
Sbjct: 64 VDMAAHLPAFAAVKDEYFKEPYPAWTAVGVAWL 96
>gnl|CDD|100007 cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong
to a large family of YjgF/YER057c/UK114-like proteins
present in bacteria, archaea, and eukaryotes with no
definitive function. The conserved domain is similar in
structure to chorismate mutase but there is no sequence
similarity and no functional connection. Members of this
family have been implicated in isoleucine (Yeo7, Ibm1,
aldR) and purine (YjgF) biosynthesis, as well as
threonine anaerobic degradation (tdcF) and mitochondrial
DNA maintenance (Ibm1). This domain homotrimerizes
forming a distinct intersubunit cavity that may serve as
a small molecule binding site.
Length = 105
Score = 67.2 bits (165), Expect = 1e-15
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
QAV H+ T+Y++G + D S + Q +Q L + +L EAG ++ TI L
Sbjct: 5 QAVVHNGTVYLAGQVADDTS-----ADITGQTRQVLAKIDALLAEAGSDKSRILSATIWL 59
Query: 80 NDINDFATVNNVYGQFFKPPY-PARSTFQV 108
D+ DFA +N V+ + P + PAR+ +
Sbjct: 60 ADMADFAAMNAVWDAWVPPGHAPARACVEA 89
>gnl|CDD|211850 TIGR03610, RutC, pyrimidine utilization protein C. This protein is
observed in operons extremely similar to that
characterized in E. coli K-12 responsible for the import
and catabolism of pyrimidines, primarily uracil. This
protein is a member of the endoribonuclease L-PSP family
defined by pfam01042.
Length = 126
Score = 59.9 bits (145), Expect = 1e-12
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 25 DNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDIN 83
D +Y+SG L D + + G + Q + L + +++ AGG+ + V I + D
Sbjct: 24 DGVVYVSGTLPFDKDNNVVHVGDAKAQTRHVLETIKSVIETAGGTMDDVTFNHIFITDWA 83
Query: 84 DFATVNNVYGQFFKPPYPARSTFQVG 109
D+A +N VY ++F PAR Q G
Sbjct: 84 DYAAINEVYAEYFPGEKPARYCIQCG 109
>gnl|CDD|100008 cd06151, YjgF_YER057c_UK114_like_3, This group of proteins belong
to a large family of YjgF/YER057c/UK114-like proteins
present in bacteria, archaea, and eukaryotes with no
definitive function. The conserved domain is similar in
structure to chorismate mutase but there is no sequence
similarity and no functional connection. Members of this
family have been implicated in isoleucine (Yeo7, Ibm1,
aldR) and purine (YjgF) biosynthesis, as well as
threonine anaerobic degradation (tdcF) and mitochondrial
DNA maintenance (Ibm1). This domain homotrimerizes
forming a distinct intersubunit cavity that may serve as
a small molecule binding site.
Length = 126
Score = 45.4 bits (108), Expect = 4e-07
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 16/106 (15%)
Query: 27 TLYISGVLG--IDASSGKM---AEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTILL- 79
T+Y+SG + ++AS+ K G E Q L + IL+ G + VVK + L
Sbjct: 13 TIYLSGTVPAVVNASAPKGSPARYGDTETQTISVLKRIETILQSQGLTMGDVVKMRVFLV 72
Query: 80 -----NDINDFATVNNVYGQFF----KPPYPARSTFQVGKLPLIDF 116
+ DFA Y QFF +P PARST QV L +
Sbjct: 73 ADPALDGKMDFAGFMKAYRQFFGTAEQPNKPARSTLQVAGLVNPGW 118
>gnl|CDD|100009 cd06152, YjgF_YER057c_UK114_like_4, YjgF, YER057c, and UK114
belong to a large family of proteins present in
bacteria, archaea, and eukaryotes with no definitive
function. The conserved domain is similar in structure
to chorismate mutase but there is no sequence
similarity and no functional connection. Members of
this family have been implicated in isoleucine (Yeo7,
Ibm1, aldR) and purine (YjgF) biosynthesis, as well as
threonine anaerobic degradation (tdcF) and
mitochondrial DNA maintenance (Ibm1). This domain
homotrimerizes forming a distinct intersubunit cavity
that may serve as a small molecule binding site.
Length = 114
Score = 40.4 bits (95), Expect = 2e-05
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGG-SYEHVVKTTIL 78
QAV+ + + ISG G D +GK+ E +E + QA N+ LK AGG +E V K
Sbjct: 5 QAVRIGDRIEISGQGGWDPDTGKIPEDLEEEIDQAFDNVELALKAAGGKGWEQVYKVNSY 64
Query: 79 LNDI 82
DI
Sbjct: 65 HVDI 68
>gnl|CDD|236764 PRK10808, PRK10808, outer membrane protein A; Reviewed.
Length = 351
Score = 30.0 bits (68), Expect = 0.27
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 7 ASLVSLVGSASAFQAVQHDNTLYISGVLG 35
A V+L G A+ QA DNT Y G LG
Sbjct: 7 AIAVALAGFATVAQAAPKDNTWYTGGKLG 35
>gnl|CDD|173113 PRK14650, PRK14650, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 302
Score = 29.4 bits (66), Expect = 0.46
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 23 QHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGS 68
Q+ NT + L + + K E + Q KQ N GH L + GS
Sbjct: 178 QNKNTFILKATLNLKKGNKKHIEEIMKQNKQIRINKGHYLFPSSGS 223
>gnl|CDD|100006 cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong
to a large family of YjgF/YER057c/UK114-like proteins
present in bacteria, archaea, and eukaryotes with no
definitive function. The conserved domain is similar in
structure to chorismate mutase but there is no sequence
similarity and no functional connection. Members of this
family have been implicated in isoleucine (Yeo7, Ibm1,
aldR) and purine (YjgF) biosynthesis, as well as
threonine anaerobic degradation (tdcF) and mitochondrial
DNA maintenance (Ibm1). This domain homotrimerizes
forming a distinct intersubunit cavity that may serve as
a small molecule binding site.
Length = 142
Score = 29.0 bits (66), Expect = 0.48
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 26/116 (22%)
Query: 21 AVQHDNTLYISGVL----GIDASSGKMAEGV---ENQ--AKQALTNMGHILKEAGGSYEH 71
AV+ N LY+SG L G +GK+ + E Q A+ N LK A G +
Sbjct: 19 AVRTGNLLYVSGQLPRVDGKLVYTGKVGADLSVEEGQEAARLCALNALAALKAALGDLDR 78
Query: 72 V---VKTTILLNDINDF----ATVN-------NVYGQFFKPPYPARSTFQVGKLPL 113
V V+ T +N DF N V+G + ARS V LPL
Sbjct: 79 VKRVVRLTGFVNSAPDFTEQPKVANGASDLLVEVFG---EAGRHARSAVGVASLPL 131
>gnl|CDD|100013 cd06156, eu_AANH_C_2, A group of hypothetical eukaryotic
proteins, characterized by the presence of an adenine
nucleotide alpha hydrolase (AANH)-like domain located
N-terminal to two distinctly different
YjgF-YER057c-UK114-like domains. This CD contains the
second of these domains. The YjgF-YER057c-UK114 protein
family is a large family of proteins present in
bacteria, archaea, and eukaryotes with no definitive
function. The conserved domain is similar in structure
to chorismate mutase but there is no sequence
similarity and no functional connection. Members of
this family have been implicated in isoleucine (Yeo7,
Ibm1, aldR) and purine (YjgF) biosynthesis, as well as
threonine anaerobic degradation (tdcF) and
mitochondrial DNA maintenance (Ibm1). This domain
homotrimerizes forming a distinct intersubunit cavity
that may serve as a small molecule binding site.
Length = 118
Score = 27.7 bits (62), Expect = 0.95
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMA---EGVENQAKQALTNMGHILKE 64
QA+ YISG +G+ ++ M G+ QA +L ++ + K
Sbjct: 3 QAIVVPKVAYISGQIGLIPAT--MTLLEGGITLQAVLSLQHLERVAKA 48
>gnl|CDD|199835 cd10277, PQQ_ADH_I, Ethanol dehydrogenase, a bacterial quinoprotein
(PQQ-dependent type I alcohol dehydrogenase). This
bacterial family of homodimeric ethanol dehydrogenases
utilize pyrroloquinoline quinone (PQQ) as a cofactor. It
represents proteins whose expression may be induced by
ethanol, and which are similar to quinoprotein methanol
dehydrogenases, but have higher specificities for
ethanol and other primary and secondary alcohols.
Dehydrogenases with PQQ cofactors, such as ethanol,
methanol, and membrane-bound glucose dehydrogenases,
form an 8-bladed beta-propeller.
Length = 529
Score = 28.4 bits (64), Expect = 1.1
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 25 DNTLYISGVLGIDASSGKM 43
DN LY S VL +D +GK+
Sbjct: 244 DN-LYTSSVLALDPDTGKI 261
>gnl|CDD|107386 cd06391, PBP1_iGluR_delta_2, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the delta2 receptor of an orphan glutamate
receptor family. N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the delta2 receptor of an orphan glutamate
receptor family. While this N-terminal domain belongs
to the periplasmic-binding fold type I superfamily, the
glutamate-binding domain of the iGluR is structurally
homologous to the periplasmic-binding fold type II. The
LIVBP-like domain of iGluRs is thought to play a role
in the initial assembly of iGluR subunits, but it is
not well understood how this domain is arranged and
functions in intact iGluR. Although the delta receptors
are a member of the ionotropic glutamate receptor
family, they cannot be activated by AMPA, kainate,
NMDA, glutamate, or any other ligands. Phylogenetic
analysis shows that both GluRdelta1 and GluRalpha2 are
closer related to non-NMDA receptors. GluRdelta2 was
shown to function as an AMPA-like receptor by mutation
analysis. Moreover, targeted disruption of GluRdelta2
gene caused motor coordination impairment, Purkinje
cell maturation, and long-term depression of synaptic
transmission. It has been suggested that GluRdelta2 is
the receptor for cerebellin 1, a glycoprotein of the
Clq and tumor necrosis factor family that is secreted
from cerebellar granule cells.
Length = 400
Score = 26.9 bits (59), Expect = 2.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 10 VSLVGSASAFQAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHI 61
V+ V + FQAVQ L G+L + +S G + G + Q+L + HI
Sbjct: 40 VTFVDGNNPFQAVQEACELMNQGILALVSSIGCTSAG----SLQSLADAMHI 87
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 26.7 bits (59), Expect = 4.4
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 4/57 (7%)
Query: 37 DASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVNNVYG 93
+ + K E N N K+ +Y LL T+NN
Sbjct: 43 NFYNEKNEEKSSNNNNNNYNNSSINRKKDNKNYMK----RSLLQLSPSLVTLNNSND 95
>gnl|CDD|148145 pfam06365, CD34_antigen, CD34/Podocalyxin family. This family
consists of several mammalian CD34 antigen proteins. The
CD34 antigen is a human leukocyte membrane protein
expressed specifically by lymphohematopoietic progenitor
cells. CD34 is a phosphoprotein. Activation of protein
kinase C (PKC) has been found to enhance CD34
phosphorylation. This family contains several eukaryotic
podocalyxin proteins. Podocalyxin is a major membrane
protein of the glomerular epithelium and is thought to
be involved in maintenance of the architecture of the
foot processes and filtration slits characteristic of
this unique epithelium by virtue of its high negative
charge. Podocalyxin functions as an anti-adhesin that
maintains an open filtration pathway between neighboring
foot processes in the glomerular epithelium by charge
repulsion.
Length = 202
Score = 25.5 bits (56), Expect = 8.4
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 24 HDNTLYISGVLGIDASSGKMA---EGVENQAKQALTNMGHILKE 64
HDN + + K++ E +N + GH KE
Sbjct: 149 HDNPTLEVMEVSSEMQEKKVSLNGELGDNGTGSWIVPNGHSTKE 192
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.391
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,134,948
Number of extensions: 514932
Number of successful extensions: 459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 23
Length of query: 127
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 42
Effective length of database: 7,167,512
Effective search space: 301035504
Effective search space used: 301035504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)