RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1836
(127 letters)
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor,
sugar binding protein; HET: BGC; 2.10A {Pseudomonas
syringae PV}
Length = 143
Score = 150 bits (380), Expect = 5e-48
Identities = 38/94 (40%), Positives = 58/94 (61%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
QA++ NT+Y+SG + +D S+ ++ EG+E Q Q N+ + + AGGS++ +VK I L
Sbjct: 37 QAIKAGNTVYMSGQIPLDPSTMELVEGIEAQITQVFENLKSVAQAAGGSFKDIVKLNIFL 96
Query: 80 NDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
D+ FA VN + G +F PYPAR+ V LP
Sbjct: 97 TDLGHFAKVNEIMGSYFSQPYPARAAIGVAALPR 130
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A
{Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A
Length = 136
Score = 149 bits (378), Expect = 7e-48
Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QAV D T+Y+SG +G+D SSG++ G V +AKQAL N+G ILK AG + +VVKTT+L
Sbjct: 22 QAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEILKAAGCDFTNVVKTTVL 81
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
L DINDF TVN +Y +F+ PAR+ +QV LP
Sbjct: 82 LADINDFGTVNEIYKTYFQGNLPARAAYQVAALPK 116
>3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria
maintenance, mitochondrial protein, protein binding;
1.75A {Saccharomyces cerevisiae}
Length = 153
Score = 148 bits (375), Expect = 4e-47
Identities = 31/94 (32%), Positives = 53/94 (56%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
QA++ +N +Y+SG + + + + +A+Q N+ +IL E+ S +++VK + L
Sbjct: 46 QAMKANNFVYVSGQIPYTPDNKPVQGSISEKAEQVFQNVKNILAESNSSLDNIVKVNVFL 105
Query: 80 NDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
D+ +FA N+VY + F PARS V LPL
Sbjct: 106 ADMKNFAEFNSVYAKHFHTHKPARSCVGVASLPL 139
>3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli
O6}
Length = 134
Score = 146 bits (370), Expect = 1e-46
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
D +Y+SG L D + + + Q + L + +++ AGG+ V +I
Sbjct: 26 PGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIF 85
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
+ D ++A +N +Y +FF PAR Q G +
Sbjct: 86 ITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKP 120
>2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor,
trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus
horikoshii}
Length = 126
Score = 145 bits (369), Expect = 1e-46
Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QA++ N L+I+G + ID +G++ +G +++Q +Q L N+ IL+ AG S V+K T+
Sbjct: 19 QAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVY 78
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
L D+NDFA +N VY ++F PAR +V +LP
Sbjct: 79 LKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPK 113
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease,
STRU genomics, joint center for structural genomics,
JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1
Length = 140
Score = 146 bits (370), Expect = 1e-46
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QAV N +++SG + ID +G++ +G +E + ++ L N+ IL+ G S + VVK T+
Sbjct: 31 QAVVVGNMMFVSGQIPIDPETGELVQGTIEEKTERVLENLKAILEAGGFSLKDVVKVTVF 90
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
++ F VN VY ++F PARS V +LP
Sbjct: 91 TTSMDYFQRVNEVYSRYFGDHRPARSFVAVAQLPR 125
>2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE
NPPSFA, national project on protein structural and
function analyses; 3.60A {Aeropyrum pernix} SCOP:
d.79.1.1
Length = 123
Score = 145 bits (368), Expect = 1e-46
Identities = 37/95 (38%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QAV+ +++SG + I+ +G + EG + AK+AL N+ I++ AG S + +VK T+
Sbjct: 13 QAVESGCFMFVSGQIPINPETGALEEGGFKESAKRALDNLKAIVEGAGYSMDDIVKVTVY 72
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
+ DI+ F+ N VY ++F PYPAR+ V LPL
Sbjct: 73 ITDISRFSEFNEVYREYFNRPYPARAVVGVAALPL 107
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein;
translation initiation inhibitor regulator-like; 2.50A
{Streptococcus mutans}
Length = 125
Score = 145 bits (368), Expect = 2e-46
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
Q N L+ SG + + +G++ +E Q +Q L N+ IL EAG ++HVVKTT
Sbjct: 18 QGKIVGNLLFASGQVPLSPETGQVIGTTIEEQTQQVLKNISAILTEAGTDFDHVVKTTCF 77
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
L+DI+DF N VY FK +PARS +V +LP
Sbjct: 78 LSDIDDFVPFNEVYATAFKSDFPARSAVEVARLPK 112
>1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia
coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A*
2uyp_A
Length = 128
Score = 145 bits (368), Expect = 2e-46
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
Q V N + SG + ++ +G++ V QA+Q+L N+ I++ AG +VKTT+ +
Sbjct: 19 QGVDLGNMIITSGQIPVNPKTGEVPADVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFV 78
Query: 80 NDINDFATVNNVYGQFF---KPPYPARSTFQVGKLPL 113
D+NDFATVN Y FF +PARS +V +LP
Sbjct: 79 KDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPK 115
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region;
translation inhibitor, structural genomics, PSI; 1.70A
{Saccharomyces cerevisiae} SCOP: d.79.1.1
Length = 129
Score = 145 bits (368), Expect = 2e-46
Identities = 31/94 (32%), Positives = 55/94 (58%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
A++ +N +++SG + + + + + ++A+Q + N+ ++L+ + S + VVK I L
Sbjct: 22 HAMKVNNLIFLSGQIPVTPDNKLVEGSIADKAEQVIQNIKNVLEASNSSLDRVVKVNIFL 81
Query: 80 NDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
DIN FA N+VY ++F PARS V LPL
Sbjct: 82 ADINHFAEFNSVYAKYFNTHKPARSCVAVAALPL 115
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein,
purine regulation, YJGF/YER057C family, gene regulation;
1.70A {Bacillus subtilis} SCOP: d.79.1.1
Length = 124
Score = 144 bits (367), Expect = 2e-46
Identities = 36/94 (38%), Positives = 54/94 (57%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
Q + +N Y SG + + S + ++ Q Q +N+ +L+EAG S+E VVK T+ +
Sbjct: 18 QGIIVNNMFYSSGQIPLTPSGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFI 77
Query: 80 NDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
D+ FA VN VYGQ+F PARS +V +LP
Sbjct: 78 ADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPK 111
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea,
structural genomics, UNK function; 2.00A {Sulfolobus
tokodaii} SCOP: d.79.1.1
Length = 128
Score = 144 bits (367), Expect = 3e-46
Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QA++ NTLY+SG + ID + ++ +G ++ Q +Q L N+ I+K AG S V +
Sbjct: 21 QAIKVGNTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSLSDVAMAFVF 80
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
L D+N F N+VY ++FK PAR T +V +LP
Sbjct: 81 LKDMNMFNDFNSVYAEYFKDKPPARVTVEVSRLPK 115
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured
organism}
Length = 127
Score = 144 bits (366), Expect = 3e-46
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QAV+ +NT+Y+SG + +D + ++ EG QA Q N+ + + AGG +VK +
Sbjct: 21 QAVKVNNTVYLSGQIPLDPVTMQLVEGDFAVQAHQVFKNLRAVCEAAGGGLRDIVKLNVY 80
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
L D+ +F VN V GQ+F+ PYPAR+ + +LP
Sbjct: 81 LTDLANFPIVNEVMGQYFQAPYPARAAIGINQLPR 115
>1xrg_A Putative translation initiation inhibitor, YJGF family; conserved
hypothetical protein, protein structure initiative, PSI;
2.20A {Clostridium thermocellum} SCOP: d.79.1.1
Length = 156
Score = 145 bits (368), Expect = 4e-46
Identities = 42/95 (44%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QA+ + +Y SG + I+ +G++ +G +E QAKQ L N+ ++L+ AG S VVKTT+
Sbjct: 50 QAIVTGSFVYTSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNKVVKTTVF 109
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
+ D++ FA VN VY ++F PYPARS +V KLP
Sbjct: 110 IKDMDSFAKVNEVYAKYFSEPYPARSCVEVSKLPK 144
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural
genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP:
d.79.1.1 PDB: 2csl_A 2cw4_A
Length = 124
Score = 144 bits (365), Expect = 5e-46
Identities = 32/94 (34%), Positives = 51/94 (54%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
QAV+ +++SG + + + + Q ++ + N+ +L+ AG VV+TT L
Sbjct: 18 QAVKAGGFVFVSGQIPLAPDGSLVEGDIRVQTERVMENLKAVLEAAGSGLSRVVQTTCFL 77
Query: 80 NDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
D+ DF N VY ++F PPYPAR+T V LP
Sbjct: 78 ADMEDFPGFNEVYARYFTPPYPARATVAVKALPR 111
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba
histolytica} PDB: 3m4s_A 3mqw_A*
Length = 148
Score = 144 bits (365), Expect = 9e-46
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QA+ + +Y SG +G+D +G A +E Q+KQ +TN+ ++L+EAG S + VVKTT L
Sbjct: 42 QAIICNGXVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCL 101
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
L DI DF N +Y + F PAR+ F LP
Sbjct: 102 LADIKDFGVFNGIYAEAFGNHKPARACFAAAALPK 136
>3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious
diseases, center for STR genomics of infectious
diseases, csgid, translation; HET: GOL; 1.80A {Vibrio
vulnificus}
Length = 153
Score = 143 bits (364), Expect = 2e-45
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
Q V N + SG + ++ ++G++ + QA+Q+L N+ +++ +G + +VK T+ +
Sbjct: 43 QGVDLGNMVLTSGQIPVNPATGEVPADIAAQARQSLDNVKAVVEASGLTVGDIVKMTVFV 102
Query: 80 NDINDFATVNNVYGQFFK----PPYPARSTFQVGKLPL 113
D+NDF TVN VYG FF YPARS +V +LP
Sbjct: 103 KDLNDFGTVNEVYGNFFDEHNVAHYPARSCVEVARLPK 140
>3lme_A Possible translation initiation inhibitor; structural genomics,
RPA2473, PSI-2, protein structure initiative; 2.74A
{Rhodopseudomonas palustris}
Length = 138
Score = 138 bits (351), Expect = 1e-43
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
+ + ++I G+ G D +GKM +G E + ++ NM + AG + V+ T+ +
Sbjct: 21 IGARAGDFVFIGGMHGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFV 80
Query: 80 NDINDF-ATVNNVYGQFF-KPPYPARSTFQVGKLPL 113
D+ + VN V + PYP R+ QV L
Sbjct: 81 TDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQ 116
>3i3f_A Hypothetical protein; structural genomics, niaid, decode,
infectious seattle structural genomics center for
infectious disease, unknown function; 1.35A {Giardia
lamblia}
Length = 141
Score = 127 bits (321), Expect = 4e-39
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
Q + +Y+ G +GID S G + +G+E Q +Q N+ L+ A +++V I L
Sbjct: 31 QIAVVNGMVYLGGSVGIDKS-GTLHKGLEEQTRQTFDNIRKCLEYANSGLDYIVSLNIFL 89
Query: 80 ND---INDFATVNNVYGQFFKPP--YPARSTFQVGKLPL 113
+ ++ A N +Y + F P P R + +L
Sbjct: 90 STSLSDSEEARFNELYREVFCVPATRPCRCCVRA-QLQE 127
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.66A {Klebsiella pneumoniae}
Length = 165
Score = 127 bits (320), Expect = 8e-39
Identities = 17/120 (14%), Positives = 42/120 (35%), Gaps = 26/120 (21%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG--------------------------VENQAKQ 53
+ + +++SG++ ++ +G + G + Q+
Sbjct: 16 AWRRAGDFIFLSGIIPVNPLTGTIVNGFQDVPEPVRELLGATGEFSTDAKQGPILAQSWY 75
Query: 54 ALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
L ++ + AGG V+K +++ F + V F+ P + QV ++
Sbjct: 76 VLESIRRTVASAGGQMSDVIKLVQYFRNLDHFPYYSRVRKLFYPDQPPVSTVVQVSEMLP 135
>1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI,
protein structure INI midwest center for structural
genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1
Length = 131
Score = 125 bits (316), Expect = 1e-38
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
A++ + L++SG +G G + Q + A N+ L AG +++ ++ T
Sbjct: 23 AAIRSGDLLFVSGQVGSRED-GTPEPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFH 81
Query: 80 NDI-NDFATVNNVYGQFF-KPPYPARSTFQVGKLP 112
D N F + V + F PPYP + V L
Sbjct: 82 TDPENQFEDIMTVKNEIFSAPPYPNWTAVGVTWLA 116
>3i7t_A RV2704, putative uncharacterized protein; siras,
YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva
unknown function; 1.93A {Mycobacterium tuberculosis}
Length = 149
Score = 125 bits (315), Expect = 4e-38
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
+AV+ + ++G G + + Q + AL + L +AG + VV+T I +
Sbjct: 21 RAVRIGPLVVVAGTTGSG-------DDIAAQTRDALRRIEIALGQAGATLADVVRTRIYV 73
Query: 80 NDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
DI+ + V V+ Q F P S +V L
Sbjct: 74 TDISRWREVGEVHAQAFGKIRPVTSMVEVTALI 106
>2ig8_A Hypothetical protein PA3499; structural genomics, PSI-2, Pro
structure initiative; 1.90A {Pseudomonas aeruginosa}
Length = 144
Score = 123 bits (311), Expect = 1e-37
Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG----VENQAKQALTNMGHILKEAGGSYEHVVKT 75
A+ L +SG+ A+ G QA L + +L+ AGG ++ K
Sbjct: 22 NALLVGEELVMSGMTAHPATRQAAERGAALDAHAQALVVLGKVKALLEAAGGHVGNLYKL 81
Query: 76 TILLNDINDFATVNNVYGQFF--KPPYPARSTFQVGKLPLIDF 116
+ + I D + +FF + +PA + +V L +
Sbjct: 82 NVYVTRIADKDAIGRARQEFFAGQGTFPASTLVEVSGLVFPEL 124
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025
putative translation initiation inhibitor; 2.15A
{Streptococcus pyogenes} SCOP: d.79.1.1
Length = 126
Score = 121 bits (306), Expect = 4e-37
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
V+ + Y++ +G + + +E+Q A M L G + + VV+ L
Sbjct: 17 GLVEAGDFYYLNYCVGN------VGQDIESQINGAFDEMERRLALVGLTLDAVVQMDCLF 70
Query: 80 NDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
D+ + + + + F YPAR + Q
Sbjct: 71 RDVWNIPVMEKMIKERFNGRYPARKSIQTEFAH 103
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.49A
{Pseudomonas aeruginosa}
Length = 122
Score = 114 bits (288), Expect = 2e-34
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
+ H NT+YI G + D S +++Q +Q L N+ +L+ G V+ ILL
Sbjct: 13 EMALHGNTVYIGGQVADDPS-----GDIQDQTRQILENIDRLLQSVGSDRGQVLSVRILL 67
Query: 80 NDINDFATVNNVYGQFFKPPY-PARSTFQVGKLP 112
D+A +N V+ Q+F P R+ +
Sbjct: 68 AHREDYAGLNQVWDQWFPEGRAPTRACSLAELID 101
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics,
oxford protein production facility, UN function; 1.90A
{Neisseria meningitidis serogroup B} PDB: 3kjk_A
Length = 128
Score = 113 bits (285), Expect = 8e-34
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
+AV + +++SG++ + E Q L + L E G HV+ I L
Sbjct: 22 EAVGANGLIFLSGMVPENG------ETAAEQTADVLAQIDRWLAECGSDKAHVLDAVIYL 75
Query: 80 NDINDFATVNNVYGQFFKP-PYPARSTFQVGKLP 112
D+ D+A +N V+ + PAR+ +
Sbjct: 76 RDMGDYAEMNGVWDAWVAAGRTPARACVEARLAR 109
>3gtz_A Putative translation initiation inhibitor; structural genomics,
unknown function, PSI-2, protein struct initiative;
2.50A {Salmonella typhimurium}
Length = 124
Score = 106 bits (266), Expect = 4e-31
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
V ++NTL+ +GV + Q L + +L++ G S ++ TI L
Sbjct: 16 DVVIYNNTLWYTGV------PENLDADAFEQTANTLAQIDAVLEKQGSSKSRILDATIFL 69
Query: 80 NDINDFATVNNVYGQFFKPPY-PARSTFQVGKLP 112
+D DFA +N + + + P R T Q G +
Sbjct: 70 SDKADFAAMNKAWDAWVVAGHAPVRCTVQAGLMN 103
>3d01_A Uncharacterized protein; protein with unknown function, structural
genomics, PSI, MCS protein structure initiative; HET:
PG5; 1.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 29.5 bits (67), Expect = 0.22
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 27/117 (23%)
Query: 21 AVQHDNTLYISGVL----GIDASSGKMAEGV-ENQAKQA-----LTNMGHILKEAGGSY- 69
N LY+SG L G A +G + V A++A + + + G
Sbjct: 38 FTISGNLLYVSGQLPMESGKIAVTGLVGRDVDVASAQRAAELCAVNILAQVKAALNGDLS 97
Query: 70 --EHVVKTTILLNDINDF---ATVNN--------VYGQFFKPPYPARSTFQVGKLPL 113
V+K + + +F V N V G+ + AR+ + LP
Sbjct: 98 KIRRVIKLNGFVASVPEFVEQHLVINGASNLIATVLGEPGR---HARAAVGMASLPF 151
>2otm_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, unknown function; 1.85A {Shewanella oneidensis}
SCOP: d.79.1.1
Length = 154
Score = 27.8 bits (63), Expect = 0.69
Identities = 17/116 (14%), Positives = 33/116 (28%), Gaps = 26/116 (22%)
Query: 21 AVQHDNTLYISGVL----GIDASSGKMAEGVE-----NQAKQALTNMGHILKEAGGSYEH 71
+ L SG G G++ + A N LK+A G
Sbjct: 30 YSIVGSQLMTSGQFPYLQGKLLYQGQLGADYTVSEGYAACRLATLNAIAQLKQACGELSR 89
Query: 72 V---VKTTILLNDINDF---ATVNN--------VYGQFFKPPYPARSTFQVGKLPL 113
+ + +LN + ++G+ + +R + +PL
Sbjct: 90 IKQIYRLEGVLNVHQSCIEHPKALDGASDLLLEIFGEAGR---HSRMIWTNPVMPL 142
>3nb3_A Outer membrane protein A; virus assembly, cementing protein,
bacteriophage, SF6, shige beta-barrel, icosahedral,
virus; 19.00A {Escherichia coli}
Length = 346
Score = 26.9 bits (59), Expect = 2.2
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 7 ASLVSLVGSASAFQAVQHDNTLYISGVLG 35
A V+L G A+ QA DNT Y LG
Sbjct: 7 AIAVALAGFATVAQAAPKDNTWYTGAKLG 35
>2qgm_A Succinoglycan biosynthesis protein; Q817Z0, NESG, X-RAY, BCR136,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacillus cereus atcc 14579} SCOP:
c.150.1.3
Length = 445
Score = 26.8 bits (58), Expect = 2.3
Identities = 8/72 (11%), Positives = 19/72 (26%)
Query: 33 VLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVNNVY 92
+G + G E + + S+ + + + D +
Sbjct: 338 TIGSTTTEGNFTLYSEYNPSTGGKITTDTIPQDVKSFNYTLGKVPYKMFLLDNRHLKGQA 397
Query: 93 GQFFKPPYPARS 104
++ K P S
Sbjct: 398 EKWVKAKRPLLS 409
>4db5_A Tumor necrosis factor ligand superfamily member 1; gitrl,
glucocorticoid-induced TNF receptor ligand, immune SY
tnfrsf18; HET: B3P; 1.52A {Oryctolagus cuniculus} PDB:
4e4s_A 2r30_A 3b93_A 3b94_A 2q1m_A
Length = 125
Score = 25.9 bits (56), Expect = 3.5
Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 48 ENQAKQALTNMGHILKEAGGSYE-HVVKTTILLNDINDFATVNNVYGQFFKPPYP 101
+A Q LTN I GG YE L + +D NN Y P
Sbjct: 68 NKEAIQTLTNNSKIQNL-GGIYEFDAGDIIELRFNSDDQVLKNNTYWGIVLLVTP 121
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 24.8 bits (55), Expect = 9.4
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 89 NNVYGQFFKPPYPARSTFQVGKLPLID 115
N +Y + F P S +V KLP D
Sbjct: 178 NYLYDEVFPEPEAILS--RVPKLPGTD 202
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.391
Gapped
Lambda K H
0.267 0.0495 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,811,455
Number of extensions: 97954
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 36
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)