RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1836
(127 letters)
>d2cwja1 d.79.1.1 (A:4-119) Putative endonuclease APE1501 {Aeropyrum
pernix [TaxId: 56636]}
Length = 116
Score = 83.3 bits (205), Expect = 2e-22
Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QAV+ +++SG + I+ +G + G + AK+AL N+ I++ AG S + +VK T+
Sbjct: 10 QAVESGCFMFVSGQIPINPETGALEEGGFKESAKRALDNLKAIVEGAGYSMDDIVKVTVY 69
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
+ DI+ F+ N VY ++F PYPAR+ V LPL
Sbjct: 70 ITDISRFSEFNEVYREYFNRPYPARAVVGVAALPL 104
>d1qaha_ d.79.1.1 (A:) 14.5 kda translational inhibitor protein,
L-PSP {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 81.4 bits (200), Expect = 1e-21
Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QAV D T+Y+SG +G+D SSG++ G V +AKQAL N+G ILK AG + +VVKTT+L
Sbjct: 22 QAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEILKAAGCDFTNVVKTTVL 81
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
L DINDF TVN +Y +F+ PAR+ +QV LP
Sbjct: 82 LADINDFGTVNEIYKTYFQGNLPARAAYQVAALPK 116
>d1qu9a_ d.79.1.1 (A:) Conserved 'hypothetical' protein YjgF
{Escherichia coli [TaxId: 562]}
Length = 127
Score = 79.4 bits (195), Expect = 8e-21
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
Q V N + SG + ++ +G++ V QA+Q+L N+ I++ AG +VKTT+ +
Sbjct: 18 QGVDLGNMIITSGQIPVNPKTGEVPADVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFV 77
Query: 80 NDINDFATVNNVYGQF---FKPPYPARSTFQVGKLPL 113
D+NDFATVN Y F +PARS +V +LP
Sbjct: 78 KDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPK 114
>d1xrga_ d.79.1.1 (A:) Purine regulatory protein YabJ {Clostridium
thermocellum [TaxId: 1515]}
Length = 125
Score = 75.2 bits (184), Expect = 2e-19
Identities = 42/94 (44%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMA-EGVENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QA+ + +Y SG + I+ +G++ G+E QAKQ L N+ ++L+ AG S VVKTT+
Sbjct: 19 QAIVTGSFVYTSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNKVVKTTVF 78
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
+ D++ FA VN VY ++F PYPARS +V KLP
Sbjct: 79 IKDMDSFAKVNEVYAKYFSEPYPARSCVEVSKLP 112
>d1x25a1 d.79.1.1 (A:1-124) Hypothetical protein ST0811 {Sulfolobus
tokodaii [TaxId: 111955]}
Length = 124
Score = 72.9 bits (178), Expect = 3e-18
Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEG-VENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QA++ NTLY+SG + ID + ++ +G ++ Q +Q L N+ I+K AG S V +
Sbjct: 18 QAIKVGNTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSLSDVAMAFVF 77
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
L D+N F N+VY ++FK PAR T +V +LP
Sbjct: 78 LKDMNMFNDFNSVYAEYFKDKPPARVTVEVSRLP 111
>d1jd1a_ d.79.1.1 (A:) Highdosage growth inhibitor YER057cp
(YEO7_YEAST) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 126
Score = 70.2 bits (171), Expect = 3e-17
Identities = 31/94 (32%), Positives = 55/94 (58%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
A++ +N +++SG + + + + + ++A+Q + N+ ++L+ + S + VVK I L
Sbjct: 20 HAMKVNNLIFLSGQIPVTPDNKLVEGSIADKAEQVIQNIKNVLEASNSSLDRVVKVNIFL 79
Query: 80 NDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
DIN FA N+VY ++F PARS V LPL
Sbjct: 80 ADINHFAEFNSVYAKYFNTHKPARSCVAVAALPL 113
>d1qd9a_ d.79.1.1 (A:) Purine regulatory protein YabJ {Bacillus
subtilis [TaxId: 1423]}
Length = 124
Score = 70.2 bits (171), Expect = 3e-17
Identities = 36/93 (38%), Positives = 54/93 (58%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
Q + +N Y SG + + S + ++ Q Q +N+ +L+EAG S+E VVK T+ +
Sbjct: 18 QGIIVNNMFYSSGQIPLTPSGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFI 77
Query: 80 NDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
D+ FA VN VYGQ+F PARS +V +LP
Sbjct: 78 ADMEQFAEVNEVYGQYFDTHKPARSCVEVARLP 110
>d2b33a1 d.79.1.1 (A:2-127) Putative protein synthesis inhibitor
TM0215 {Thermotoga maritima [TaxId: 2336]}
Length = 126
Score = 69.4 bits (169), Expect = 5e-17
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAE-GVENQAKQALTNMGHILKEAGGSYEHVVKTTIL 78
QAV N +++SG + ID +G++ + +E + ++ L N+ IL+ G S + VVK T+
Sbjct: 18 QAVVVGNMMFVSGQIPIDPETGELVQGTIEEKTERVLENLKAILEAGGFSLKDVVKVTVF 77
Query: 79 LNDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
++ F VN VY ++F PARS V +LP
Sbjct: 78 TTSMDYFQRVNEVYSRYFGDHRPARSFVAVAQLP 111
>d2ewca1 d.79.1.1 (A:3-122) Hypothetical protein SPy2060
{Streptococcus pyogenes [TaxId: 1314]}
Length = 120
Score = 68.5 bits (167), Expect = 1e-16
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
V+ + Y++ +G + + +E+Q A M L G + + VV+ L
Sbjct: 15 GLVEAGDFYYLNYCVG------NVGQDIESQINGAFDEMERRLALVGLTLDAVVQMDCLF 68
Query: 80 NDINDFATVNNVYGQFFKPPYPARSTFQVGKLPL 113
D+ + + + + F YPAR + Q
Sbjct: 69 RDVWNIPVMEKMIKERFNGRYPARKSIQTEFAHH 102
>d2cvla1 d.79.1.1 (A:1-124) Putative translation intiation inhibitor
TTHA0137 {Thermus thermophilus [TaxId: 274]}
Length = 124
Score = 66.4 bits (161), Expect = 9e-16
Identities = 32/93 (34%), Positives = 51/93 (54%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
QAV+ +++SG + + + + Q ++ + N+ +L+ AG VV+TT L
Sbjct: 18 QAVKAGGFVFVSGQIPLAPDGSLVEGDIRVQTERVMENLKAVLEAAGSGLSRVVQTTCFL 77
Query: 80 NDINDFATVNNVYGQFFKPPYPARSTFQVGKLP 112
D+ DF N VY ++F PPYPAR+T V LP
Sbjct: 78 ADMEDFPGFNEVYARYFTPPYPARATVAVKALP 110
>d2otma1 d.79.1.1 (A:2-153) Hypothetical protein SO1960 {Shewanella
oneidensis [TaxId: 70863]}
Length = 152
Score = 59.8 bits (144), Expect = 5e-13
Identities = 14/114 (12%), Positives = 26/114 (22%), Gaps = 20/114 (17%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVEN---------QAKQALTNMGHILKEA---GG 67
+ L SG + + A N LK+A
Sbjct: 27 PYSIVGSQLMTSGQFPYLQGKLLYQGQLGADYTVSEGYAACRLATLNAIAQLKQACGELS 86
Query: 68 SYEHVVKTTILLNDINDFATVNNVYG--------QFFKPPYPARSTFQVGKLPL 113
+ + + +LN F + +R + +PL
Sbjct: 87 RIKQIYRLEGVLNVHQSCIEHPKALDGASDLLLEIFGEAGRHSRMIWTNPVMPL 140
>d1pf5a_ d.79.1.1 (A:) Hypothetical protein YjgH {Escherichia coli
[TaxId: 562]}
Length = 130
Score = 58.6 bits (141), Expect = 9e-13
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 20 QAVQHDNTLYISGVLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILL 79
A++ + L++SG +G G + Q + A N+ L AG +++ ++ T
Sbjct: 22 AAIRSGDLLFVSGQVGSRE-DGTPEPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFH 80
Query: 80 NDI-NDFATVNNVYGQFFKP-PYPARSTFQVGKLP 112
D N F + V + F PYP + V L
Sbjct: 81 TDPENQFEDIMTVKNEIFSAPPYPNWTAVGVTWLA 115
>d2qgma1 c.150.1.3 (A:33-445) Succinoglycan biosynthesis protein
BC3205 {Bacillus cereus [TaxId: 1396]}
Length = 413
Score = 27.3 bits (60), Expect = 0.61
Identities = 8/72 (11%), Positives = 19/72 (26%)
Query: 33 VLGIDASSGKMAEGVENQAKQALTNMGHILKEAGGSYEHVVKTTILLNDINDFATVNNVY 92
+G + G E + + S+ + + + D +
Sbjct: 306 TIGSTTTEGNFTLYSEYNPSTGGKITTDTIPQDVKSFNYTLGKVPYKMFLLDNRHLKGQA 365
Query: 93 GQFFKPPYPARS 104
++ K P S
Sbjct: 366 EKWVKAKRPLLS 377
>d2joza1 b.60.1.1 (A:2-127) Hypothetical protein YxeF {Bacillus
subtilis [TaxId: 1423]}
Length = 126
Score = 24.7 bits (53), Expect = 2.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 94 QFFKPPYPARSTFQVGK 110
Q+ P YP +ST + G+
Sbjct: 77 QYLGPYYPLKSTLKRGE 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.391
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 422,095
Number of extensions: 16738
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 16
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.6 bits)