Query psy1838
Match_columns 80
No_of_seqs 45 out of 47
Neff 2.8
Searched_HMMs 46136
Date Fri Aug 16 17:38:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4489|consensus 100.0 2.4E-42 5.1E-47 231.0 7.5 79 1-80 1-79 (87)
2 PF06726 BC10: Bladder cancer- 100.0 3.2E-29 7E-34 159.1 3.0 65 1-65 1-65 (65)
3 PF11833 DUF3353: Protein of u 49.1 18 0.0004 26.6 2.7 34 5-38 161-194 (194)
4 PF01623 Carla_C4: Carlavirus 41.3 14 0.0003 25.2 0.9 15 66-80 66-80 (91)
5 smart00274 FOLN Follistatin-N- 30.9 28 0.00062 18.4 0.9 10 71-80 1-10 (26)
6 KOG2771|consensus 25.4 28 0.00061 28.6 0.5 17 35-51 275-291 (344)
7 TIGR03063 srtB_target sortase 23.1 1.2E+02 0.0025 16.8 2.5 10 26-35 11-20 (29)
8 PF15322 PMSI1: Protein missin 20.2 37 0.00081 27.7 0.2 32 38-77 221-252 (311)
9 COG1862 YajC Preprotein transl 19.2 97 0.0021 20.9 2.0 19 24-42 11-29 (97)
10 PF02132 RecR: RecR protein; 18.8 62 0.0013 18.1 0.9 9 39-47 28-36 (41)
No 1
>KOG4489|consensus
Probab=100.00 E-value=2.4e-42 Score=231.03 Aligned_cols=79 Identities=71% Similarity=1.382 Sum_probs=77.8
Q ss_pred CchhhhhhhhhhccCCCCchhhhhHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhcCCCceeeecCCccceeccCC
Q psy1838 1 MYCLQWLIPVLLIPKPLNPALLQTHVMFMVLYLTGFFLERKPCTICSLVFIIAVFLICYSGIGNCLFWSNNCDTVQCENG 80 (80)
Q Consensus 1 MyCLrw~LPlLliP~pasPa~~~~~~~Fi~Lfli~~~l~~RPC~yCSlll~~l~~~~C~s~~~~C~f~~~~c~~~~~~~~ 80 (80)
||||||+||+|+||||.||+++.+|+|||++|++|||+|||||++||++|++++.++|||++|||+||+ +|+++.+|+|
T Consensus 1 MYCLQwLlPVLLIPKp~nPal~~~h~mFm~fYlvgFfLERkPCtICslvFl~AlsLiCYS~~gnCifw~-~c~~~l~e~~ 79 (87)
T KOG4489|consen 1 MYCLQWLLPVLLIPKPINPALLVEHAMFMWFYLVGFFLERKPCTICSLVFLIALSLICYSDPGNCIFWP-TCTKKLNEEV 79 (87)
T ss_pred CchHHhhhhheecCCCCChHHHHHHHHHHHHHHHHHHhccCCceehHHHHHHHHHHHhhcCCCCEEEec-CCCCCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999875
No 2
>PF06726 BC10: Bladder cancer-related protein BC10; InterPro: IPR018015 This family consists of a series of short proteins of around 90 residues in length. The human protein O60629 from SWISSPROT (or BC10) has been implicated in bladder cancer where the transcription of the gene coding for this protein is nearly completely abolished in highly invasive transitional cell carcinomas (TCCs) []. The protein is a small globular protein containing two transmembrane helices, and it is a multiply edited transcript. All the editing sites are found in either the 5'-UTR or the N-terminal section of the protein, which is predicted to be outside the membrane. The three coding edits are all non-synonymous and predicted to encode exposed residues []. The function of this family is unknown.
Probab=99.95 E-value=3.2e-29 Score=159.07 Aligned_cols=65 Identities=54% Similarity=1.133 Sum_probs=64.1
Q ss_pred CchhhhhhhhhhccCCCCchhhhhHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhcCCCce
Q psy1838 1 MYCLQWLIPVLLIPKPLNPALLQTHVMFMVLYLTGFFLERKPCTICSLVFIIAVFLICYSGIGNC 65 (80)
Q Consensus 1 MyCLrw~LPlLliP~pasPa~~~~~~~Fi~Lfli~~~l~~RPC~yCSlll~~l~~~~C~s~~~~C 65 (80)
||||||++|++++|+|+||+++++|++|+++|++|+++|+|||+|||+++.+++.++|+++|++|
T Consensus 1 M~cL~~~~p~l~~p~~~~~~~~~a~~~f~~l~lig~~~~~~Pc~~c~i~~~~~~~a~~~~~~~~~ 65 (65)
T PF06726_consen 1 MYCLHWNLPLLLFPKPANRALVNASPMFIVLFLIGFFLERRPCVHCSITFGAFFFAICRPNWSNC 65 (65)
T ss_pred CceeeecccceeeecCCCchhhhcccHHHHHHHHHHHHhhCCceeehHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999987
No 3
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=49.07 E-value=18 Score=26.62 Aligned_cols=34 Identities=29% Similarity=0.670 Sum_probs=28.2
Q ss_pred hhhhhhhhccCCCCchhhhhHHHHHHHHHHHHHH
Q psy1838 5 QWLIPVLLIPKPLNPALLQTHVMFMVLYLTGFFL 38 (80)
Q Consensus 5 rw~LPlLliP~pasPa~~~~~~~Fi~Lfli~~~l 38 (80)
.-|+|...+|-+.+|.....=+.|++|++++.|+
T Consensus 161 ~~~l~~~~~p~~~s~~~~~sl~~~i~lwl~s~fL 194 (194)
T PF11833_consen 161 ASWLPVDIVPGPWSPEQLVSLFTYILLWLVSLFL 194 (194)
T ss_pred HhhcccccCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3466777778779999999999999999999875
No 4
>PF01623 Carla_C4: Carlavirus putative nucleic acid binding protein; InterPro: IPR002568 This family of carlavirus nucleic acid binding proteins includes a motif for a potential C-4 type zinc finger this has four highly conserved cysteine residues and is a conserved feature of the carlaviruses 3' terminal ORF []. These proteins may function as viral transcriptional regulators. The carlavirus family includes Garlic latent virus and Potato virus S and Potato virus M, these viruses are positive strand, ssRNA with no DNA stage.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent
Probab=41.35 E-value=14 Score=25.18 Aligned_cols=15 Identities=27% Similarity=0.968 Sum_probs=11.8
Q ss_pred eeecCCccceeccCC
Q psy1838 66 LFWSNNCDTVQCENG 80 (80)
Q Consensus 66 ~f~~~~c~~~~~~~~ 80 (80)
|...+.||+++|-+|
T Consensus 66 f~~t~rCDnkTC~PG 80 (91)
T PF01623_consen 66 FYFTKRCDNKTCVPG 80 (91)
T ss_pred ceeCccCCCCcccCC
Confidence 344669999999887
No 5
>smart00274 FOLN Follistatin-N-terminal domain-like. Follistatin-N-terminal domain-like, EGF-like. Region distinct from the kazal-like sequence
Probab=30.93 E-value=28 Score=18.40 Aligned_cols=10 Identities=50% Similarity=1.105 Sum_probs=7.8
Q ss_pred CccceeccCC
Q psy1838 71 NCDTVQCENG 80 (80)
Q Consensus 71 ~c~~~~~~~~ 80 (80)
+|++++|..|
T Consensus 1 ~C~~v~C~~G 10 (26)
T smart00274 1 SCRNVQCPFG 10 (26)
T ss_pred CCCCEECCCC
Confidence 4888888776
No 6
>KOG2771|consensus
Probab=25.44 E-value=28 Score=28.59 Aligned_cols=17 Identities=29% Similarity=1.022 Sum_probs=13.9
Q ss_pred HHHHhcCCchHHHHHHH
Q psy1838 35 GFFLERKPCTICSLVFI 51 (80)
Q Consensus 35 ~~~l~~RPC~yCSlll~ 51 (80)
=.|+.|.||..||.-|+
T Consensus 275 dv~ll~EPC~MCsMALv 291 (344)
T KOG2771|consen 275 DVYLLHEPCAMCSMALV 291 (344)
T ss_pred eEEEecChHHHHHHHHH
Confidence 45889999999997664
No 7
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=23.14 E-value=1.2e+02 Score=16.81 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=6.9
Q ss_pred HHHHHHHHHH
Q psy1838 26 VMFMVLYLTG 35 (80)
Q Consensus 26 ~~Fi~Lfli~ 35 (80)
.+|+++++.+
T Consensus 11 ~ly~~l~~~s 20 (29)
T TIGR03063 11 GLYAVLFLGS 20 (29)
T ss_pred HHHHHHHHHH
Confidence 3577777775
No 8
>PF15322 PMSI1: Protein missing in infertile sperm 1, putative
Probab=20.17 E-value=37 Score=27.68 Aligned_cols=32 Identities=28% Similarity=0.580 Sum_probs=18.8
Q ss_pred HhcCCchHHHHHHHHHHHHHhhcCCCceeeecCCccceec
Q psy1838 38 LERKPCTICSLVFIIAVFLICYSGIGNCLFWSNNCDTVQC 77 (80)
Q Consensus 38 l~~RPC~yCSlll~~l~~~~C~s~~~~C~f~~~~c~~~~~ 77 (80)
-|||||+|=- -.|+--...|-.-+.-|....|
T Consensus 221 TehrPCtY~~--------C~Cnr~~eECPLD~~lc~d~sc 252 (311)
T PF15322_consen 221 TEHRPCTYQQ--------CPCNREREECPLDSSLCPDTSC 252 (311)
T ss_pred hccCCccccc--------CCcccccccCCCCCCCCCCccc
Confidence 5899999921 1244434557666656665554
No 9
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=19.17 E-value=97 Score=20.91 Aligned_cols=19 Identities=16% Similarity=0.418 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHhcCC
Q psy1838 24 THVMFMVLYLTGFFLERKP 42 (80)
Q Consensus 24 ~~~~Fi~Lfli~~~l~~RP 42 (80)
.=.++++++.+-+|+..||
T Consensus 11 ~ll~~vl~~~ifyFli~RP 29 (97)
T COG1862 11 LLLPLVLIFAIFYFLIIRP 29 (97)
T ss_pred HHHHHHHHHHHHHHhhcCH
Confidence 3455666666666668887
No 10
>PF02132 RecR: RecR protein; InterPro: IPR023628 The bacterial protein RecR seems to play a role in a recombinational process of DNA repair []. It may act with RecF and RecO. RecR's structure consists of a N-terminal helix-hairpin-helix (HhH) motif, followed by a Cys4 zinc-finger motif, a Toprim domain and a Walker B motif []. This entry represents the C4-type zinc finger.; PDB: 1VDD_D 2V1C_B.
Probab=18.81 E-value=62 Score=18.08 Aligned_cols=9 Identities=67% Similarity=1.523 Sum_probs=0.0
Q ss_pred hcCCchHHH
Q psy1838 39 ERKPCTICS 47 (80)
Q Consensus 39 ~~RPC~yCS 47 (80)
+..||.+|+
T Consensus 28 e~~~C~IC~ 36 (41)
T PF02132_consen 28 EEDPCEICS 36 (41)
T ss_dssp SSSS-HHHH
T ss_pred CCCcCcCCC
Done!