Query psy1838
Match_columns 80
No_of_seqs 45 out of 47
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 17:38:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e0h_A Mitochondrial FAD-linke 38.2 34 0.0011 21.4 3.3 35 16-53 23-57 (106)
2 3gwn_A Probable FAD-linked sul 25.0 75 0.0025 20.3 3.3 33 16-51 25-57 (114)
3 3u5s_A FAD-linked sulfhydryl o 23.9 78 0.0027 20.6 3.3 35 16-53 39-73 (126)
4 2rdd_B UPF0092 membrane protei 19.4 46 0.0016 17.6 1.2 15 28-42 9-23 (37)
5 1jr8_A ERV2 protein, mitochond 18.7 1.2E+02 0.0041 19.5 3.3 35 15-52 26-60 (117)
6 3gwl_A P14, FAD-linked sulfhyd 16.5 1.7E+02 0.006 18.3 3.7 14 41-54 45-58 (106)
7 4e0i_A Mitochondrial FAD-linke 15.9 1.4E+02 0.0047 21.0 3.3 35 16-53 106-140 (189)
8 2fyg_A Replicase polyprotein 1 13.7 54 0.0018 22.8 0.7 14 34-47 104-117 (128)
9 3td7_A FAD-linked sulfhydryl o 10.7 2.2E+02 0.0075 21.9 3.4 33 16-51 59-91 (295)
10 3r24_B Non-structural protein 10.6 77 0.0026 22.6 0.7 14 34-47 111-124 (155)
No 1
>4e0h_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; four-helix bundle, flavin-linked sulfhydryl oxidase, FAD BIN oxidation; HET: FAD; 2.00A {Saccharomyces cerevisiae}
Probab=38.21 E-value=34 Score=21.44 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=20.5
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q psy1838 16 PLNPALLQTHVMFMVLYLTGFFLERKPCTICSLVFIIA 53 (80)
Q Consensus 16 pasPa~~~~~~~Fi~Lfli~~~l~~RPC~yCSlll~~l 53 (80)
|.+|.-.+-..|.-++..++.+ =||.+|+-=+.-.
T Consensus 23 P~~pt~~~k~~~~~fi~~l~~~---lPC~~C~~hf~~~ 57 (106)
T 4e0h_A 23 PAQPTDQQKGEMKQFLNIFSHI---YPCNWCAKDFEKY 57 (106)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHH---CSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhhh---CChHHHHHHHHHH
Confidence 3445544555555555555444 4999998766543
No 2
>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprot oxidoreductase, virion; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus}
Probab=24.98 E-value=75 Score=20.27 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=21.6
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHhcCCchHHHHHHH
Q psy1838 16 PLNPALLQTHVMFMVLYLTGFFLERKPCTICSLVFI 51 (80)
Q Consensus 16 pasPa~~~~~~~Fi~Lfli~~~l~~RPC~yCSlll~ 51 (80)
|.+|.-.+...|--++.+++.+ =||..|+-=|.
T Consensus 25 p~~pt~~~~~~~~~fi~~~~~~---yPC~~Ca~hf~ 57 (114)
T 3gwn_A 25 PLNPTSDDKRRYKNYFISLGDV---LPCRLCRESYK 57 (114)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHH---CSSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH---CCCHHHHHHHH
Confidence 4556655666776666666554 49999986544
No 3
>3u5s_A FAD-linked sulfhydryl oxidase ALR; flavin, liver, oxidoreductase; HET: FAD; 1.50A {Homo sapiens} PDB: 3mbg_A* 3tk0_A* 3o55_A* 3u2m_A* 3u2l_A* 3r7c_A* 1oqc_A*
Probab=23.91 E-value=78 Score=20.62 Aligned_cols=35 Identities=20% Similarity=0.068 Sum_probs=22.7
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q psy1838 16 PLNPALLQTHVMFMVLYLTGFFLERKPCTICSLVFIIA 53 (80)
Q Consensus 16 pasPa~~~~~~~Fi~Lfli~~~l~~RPC~yCSlll~~l 53 (80)
|.+|.-.+-..|.-++..++.+ =||.+|+-=+.-.
T Consensus 39 P~~Pt~~~k~~~~~fi~~l~~~---lPC~~C~~hf~~~ 73 (126)
T 3u5s_A 39 PDLPTPEQQQDMAQFIHLFSKF---YPXEEXAEDLRKR 73 (126)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHH---CSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHh---CCchHHHHHHHHH
Confidence 4556655666666666655544 5999999765443
No 4
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=19.40 E-value=46 Score=17.64 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhcCC
Q psy1838 28 FMVLYLTGFFLERKP 42 (80)
Q Consensus 28 Fi~Lfli~~~l~~RP 42 (80)
+++++.+-+|+.-||
T Consensus 9 ~v~~~~ifYFl~iRP 23 (37)
T 2rdd_B 9 LVVFGLIFYFMILRP 23 (37)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 444445544555554
No 5
>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*
Probab=18.68 E-value=1.2e+02 Score=19.48 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=22.9
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q psy1838 15 KPLNPALLQTHVMFMVLYLTGFFLERKPCTICSLVFII 52 (80)
Q Consensus 15 ~pasPa~~~~~~~Fi~Lfli~~~l~~RPC~yCSlll~~ 52 (80)
.|.+|...+..+|--++.++..+ =||..|+-=|.-
T Consensus 26 ~p~~pt~~~~~~l~~f~~~~~~f---ypC~~Ca~hF~~ 60 (117)
T 1jr8_A 26 FPDEPTPEEREKLHTFIGLYAEL---YPCGECSYHFVK 60 (117)
T ss_dssp SCSSCCHHHHHHHHHHHHHHHHH---CSSHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHH---CCCHHHHHHHHH
Confidence 35566666666666666666554 499999865543
No 6
>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V}
Probab=16.54 E-value=1.7e+02 Score=18.29 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=10.5
Q ss_pred CCchHHHHHHHHHH
Q psy1838 41 KPCTICSLVFIIAV 54 (80)
Q Consensus 41 RPC~yCSlll~~l~ 54 (80)
=||..|+-=|.-.+
T Consensus 45 yPC~~Ca~hf~~~~ 58 (106)
T 3gwl_A 45 LPCTRCQHHAFSYL 58 (106)
T ss_dssp CSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999987655443
No 7
>4e0i_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; flavin-linked sulfhydryl oxidase, MIA40, oxidation, mitochon intermembrane space; HET: FAD; 3.00A {Saccharomyces cerevisiae}
Probab=15.90 E-value=1.4e+02 Score=20.98 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=20.3
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q psy1838 16 PLNPALLQTHVMFMVLYLTGFFLERKPCTICSLVFIIA 53 (80)
Q Consensus 16 pasPa~~~~~~~Fi~Lfli~~~l~~RPC~yCSlll~~l 53 (80)
|.+|.-.+-..|.-++..++.+ =||.+|+-=|.-.
T Consensus 106 P~~Pt~~~k~~~~~Fi~~l~~~---lPC~~C~~hf~~~ 140 (189)
T 4e0i_A 106 PAQPTDQQKGEMKQFLNIFSHI---YPCNWSAKDFEKY 140 (189)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHH---CSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH---CCcHHHHHHHHHH
Confidence 3445444555555555555443 4999998765443
No 8
>2fyg_A Replicase polyprotein 1AB; SARS virus polyprotein non-structural protein NSP10, zinc FI viral protein; 1.80A {Sars coronavirus} SCOP: g.86.1.1 PDB: 2xyq_B* 2xyr_B* 2xyv_B*
Probab=13.74 E-value=54 Score=22.75 Aligned_cols=14 Identities=43% Similarity=1.032 Sum_probs=11.9
Q ss_pred HHHHHhcCCchHHH
Q psy1838 34 TGFFLERKPCTICS 47 (80)
Q Consensus 34 i~~~l~~RPC~yCS 47 (80)
|+|-+++.||..|-
T Consensus 104 i~Fcl~n~vC~VC~ 117 (128)
T 2fyg_A 104 VGFTLRNTVCTVCG 117 (128)
T ss_dssp HHHHHHCCBCTTTC
T ss_pred eeEEEecCccceec
Confidence 58999999998873
No 9
>3td7_A FAD-linked sulfhydryl oxidase R596; four helix-bundle, orfan domain, oxidoreductase; HET: FAD; 2.21A {Acanthamoeba polyphaga mimivirus}
Probab=10.75 E-value=2.2e+02 Score=21.88 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=20.6
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHhcCCchHHHHHHH
Q psy1838 16 PLNPALLQTHVMFMVLYLTGFFLERKPCTICSLVFI 51 (80)
Q Consensus 16 pasPa~~~~~~~Fi~Lfli~~~l~~RPC~yCSlll~ 51 (80)
|.+|.-.+-..|.-++..++.++ ||.+|+-=+.
T Consensus 59 PenPT~~dKk~y~~FI~nL~~vL---PC~~Cr~HF~ 91 (295)
T 3td7_A 59 PLNPTSDDKRRYKNYFISLGDVL---PCRLCRESYK 91 (295)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHS---SSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHC---CCHHHHHHHH
Confidence 45565555555665555555544 9999986554
No 10
>3r24_B Non-structural protein 10 and non-structural PROT; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} PDB: 2g9t_A 2ga6_A
Probab=10.62 E-value=77 Score=22.57 Aligned_cols=14 Identities=43% Similarity=1.032 Sum_probs=11.9
Q ss_pred HHHHHhcCCchHHH
Q psy1838 34 TGFFLERKPCTICS 47 (80)
Q Consensus 34 i~~~l~~RPC~yCS 47 (80)
|+|-+++.||..|-
T Consensus 111 i~F~L~n~vC~VC~ 124 (155)
T 3r24_B 111 VGFTLRNTVCTVCG 124 (155)
T ss_dssp HHHHHHCCBCTTTC
T ss_pred eeEEEecCcccccc
Confidence 48899999999874
Done!