Query psy1838
Match_columns 80
No_of_seqs 45 out of 47
Neff 2.8
Searched_HMMs 13730
Date Fri Aug 16 17:38:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1838.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1838hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lr7a1 g.3.11.3 (A:64-88) Dom 32.5 6.8 0.0005 19.4 0.7 10 71-80 2-11 (26)
2 d1oqca_ a.24.15.1 (A:) Augment 20.1 51 0.0037 19.1 3.3 34 18-54 28-61 (112)
3 d1jr8a_ a.24.15.1 (A:) Thiol o 20.0 52 0.0038 19.0 3.3 36 16-54 24-59 (105)
4 d2ar1a1 b.122.1.8 (A:7-163) Hy 16.5 25 0.0018 22.7 1.3 13 62-74 48-60 (157)
5 d2gbsa1 b.122.1.8 (A:2-137) Hy 16.1 28 0.002 21.9 1.4 13 62-74 45-57 (136)
6 d1wjpa2 g.37.1.1 (A:43-66) Zin 15.6 6.1 0.00044 19.6 -1.6 8 43-50 3-10 (26)
7 d2evea1 b.122.1.8 (A:2-149) Hy 14.9 29 0.0021 22.4 1.3 13 62-74 43-55 (148)
8 d2fyga1 g.86.1.1 (A:6-128) Non 14.1 24 0.0018 22.7 0.7 14 34-47 103-116 (123)
9 d1mb3a_ c.23.1.1 (A:) Cell div 11.1 79 0.0058 17.5 2.4 9 12-20 101-109 (123)
10 d1zcea1 b.122.1.8 (A:2-147) Hy 10.4 47 0.0034 21.0 1.2 12 63-74 47-58 (146)
No 1
>d1lr7a1 g.3.11.3 (A:64-88) Domain of follistatin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=32.53 E-value=6.8 Score=19.43 Aligned_cols=10 Identities=40% Similarity=1.195 Sum_probs=8.3
Q ss_pred CccceeccCC
Q psy1838 71 NCDTVQCENG 80 (80)
Q Consensus 71 ~c~~~~~~~~ 80 (80)
+||+|.|.+|
T Consensus 2 tcdnvdcgpg 11 (26)
T d1lr7a1 2 TCENVDCGPG 11 (26)
T ss_dssp CSTTCCCCTT
T ss_pred cccccccCCC
Confidence 6899988876
No 2
>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.09 E-value=51 Score=19.08 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=18.2
Q ss_pred CchhhhhHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q psy1838 18 NPALLQTHVMFMVLYLTGFFLERKPCTICSLVFIIAV 54 (80)
Q Consensus 18 sPa~~~~~~~Fi~Lfli~~~l~~RPC~yCSlll~~l~ 54 (80)
+|.-.....+.-++..++- -=||..|+-=+.-.+
T Consensus 28 ~pt~~~~~~~~~fi~~l~~---~lPC~~Cr~h~~~~l 61 (112)
T d1oqca_ 28 MPTPEQQQDMAQFIHIFSK---FYPCEECAEDIRKRI 61 (112)
T ss_dssp SCCHHHHHHHHHHHHHHHH---HCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCh---hCccHHHHHHHHHHH
Confidence 3443334444444444443 349999987665444
No 3
>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.04 E-value=52 Score=19.01 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=20.3
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q psy1838 16 PLNPALLQTHVMFMVLYLTGFFLERKPCTICSLVFIIAV 54 (80)
Q Consensus 16 pasPa~~~~~~~Fi~Lfli~~~l~~RPC~yCSlll~~l~ 54 (80)
|.+|.-.+...+.-++..++- -=||..|+-=+.-.+
T Consensus 24 p~~pt~~~k~~~~~f~~~l~~---~lPC~~C~~h~~~~l 59 (105)
T d1jr8a_ 24 PDEPTPEEREKLHTFIGLYAE---LYPCGECSYHFVKLI 59 (105)
T ss_dssp CSSCCHHHHHHHHHHHHHHHH---HCSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH---HcCcHHHHHHHHHHH
Confidence 345554444444444444443 369999987665544
No 4
>d2ar1a1 b.122.1.8 (A:7-163) Hypothetical protein LmjF36.6870 {Leishmania major [TaxId: 5664]}
Probab=16.53 E-value=25 Score=22.65 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=11.0
Q ss_pred CCceeeecCCccc
Q psy1838 62 IGNCLFWSNNCDT 74 (80)
Q Consensus 62 ~~~C~f~~~~c~~ 74 (80)
-|.+|||+|+|+.
T Consensus 48 GD~~~fYHS~~~~ 60 (157)
T d2ar1a1 48 GDKVLFYHSNTKE 60 (157)
T ss_dssp TCEEEEEECSSSS
T ss_pred CCEEEEEEcCCCC
Confidence 3889999999984
No 5
>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=16.07 E-value=28 Score=21.94 Aligned_cols=13 Identities=8% Similarity=0.240 Sum_probs=10.8
Q ss_pred CCceeeecCCccc
Q psy1838 62 IGNCLFWSNNCDT 74 (80)
Q Consensus 62 ~~~C~f~~~~c~~ 74 (80)
-|.|||++|+|..
T Consensus 45 GD~~~fYHS~~~~ 57 (136)
T d2gbsa1 45 GDRAFYYHSNEGK 57 (136)
T ss_dssp TCEEEEEETTTTC
T ss_pred CCEEEEEecCCCC
Confidence 3889999999864
No 6
>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.61 E-value=6.1 Score=19.61 Aligned_cols=8 Identities=63% Similarity=1.397 Sum_probs=5.3
Q ss_pred chHHHHHH
Q psy1838 43 CTICSLVF 50 (80)
Q Consensus 43 C~yCSlll 50 (80)
|.|||+=|
T Consensus 3 cpycslrf 10 (26)
T d1wjpa2 3 CPYCSLRF 10 (26)
T ss_dssp CTTTCCCB
T ss_pred CCcceeee
Confidence 77887643
No 7
>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229 {Pseudomonas syringae [TaxId: 317]}
Probab=14.94 E-value=29 Score=22.38 Aligned_cols=13 Identities=15% Similarity=0.542 Sum_probs=10.8
Q ss_pred CCceeeecCCccc
Q psy1838 62 IGNCLFWSNNCDT 74 (80)
Q Consensus 62 ~~~C~f~~~~c~~ 74 (80)
-|.|||++|+|..
T Consensus 43 GD~~~fYHS~~~~ 55 (148)
T d2evea1 43 GDEFFFYHSSCPE 55 (148)
T ss_dssp TCEEEEEECSSSS
T ss_pred CCEEEEEecCCCC
Confidence 3889999999963
No 8
>d2fyga1 g.86.1.1 (A:6-128) Nonstructural protein 10, NSP10 {SARS coronavirus [TaxId: 227859]}
Probab=14.09 E-value=24 Score=22.69 Aligned_cols=14 Identities=43% Similarity=1.032 Sum_probs=11.8
Q ss_pred HHHHHhcCCchHHH
Q psy1838 34 TGFFLERKPCTICS 47 (80)
Q Consensus 34 i~~~l~~RPC~yCS 47 (80)
|+|-+++.||..|-
T Consensus 103 v~F~L~n~vC~vC~ 116 (123)
T d2fyga1 103 VGFTLRNTVCTVCG 116 (123)
T ss_dssp HHHHHHCCBCTTTC
T ss_pred ceEEEecCcccccc
Confidence 48999999998873
No 9
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=11.12 E-value=79 Score=17.53 Aligned_cols=9 Identities=33% Similarity=0.637 Sum_probs=6.7
Q ss_pred hccCCCCch
Q psy1838 12 LIPKPLNPA 20 (80)
Q Consensus 12 liP~pasPa 20 (80)
++.||.+|.
T Consensus 101 ~l~KP~~~~ 109 (123)
T d1mb3a_ 101 YISKPISVV 109 (123)
T ss_dssp EECSSCCHH
T ss_pred EEECCCCHH
Confidence 577887776
No 10
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=10.44 E-value=47 Score=21.04 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=10.3
Q ss_pred CceeeecCCccc
Q psy1838 63 GNCLFWSNNCDT 74 (80)
Q Consensus 63 ~~C~f~~~~c~~ 74 (80)
|.+||++|+|+.
T Consensus 47 D~~ffYHS~~~~ 58 (146)
T d1zcea1 47 DKGFFYHSNEGL 58 (146)
T ss_dssp CEEEEEETTTTC
T ss_pred CEEEEEecCCCC
Confidence 789999999864
Done!