BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1839
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase (Tm0166)
From Thermotoga Maritima At 2.10 A Resolution
Length = 442
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 5 FSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYV 64
+ SPHL RERI+LN E IS + K + T+ L+ K P++F+ +T M+F
Sbjct: 84 YYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLY 143
Query: 65 FVKEKPDAVIMEVGIGGRYDNTNII-PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM 123
F ++ D ++EVG+GGR D TN++ P + I ++ DH LG TIE+I +K+GI+
Sbjct: 144 FAEKNVDIAVLEVGLGGRLDATNVVFPLCST--IVTVDRDHEKTLGYTIEQIAWEKSGII 201
Query: 124 KPNCIAVTSANQRGPCK 140
K VT +R K
Sbjct: 202 KERVPLVTGERKREALK 218
>pdb|3N2A|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
SynthaseDIHYDROFOLATE SYNTHASE FROM YERSINIA PESTIS CO92
pdb|3NRS|A Chain A, Crystal Structure Of Ligand-Free Bifunctional
Folylpolyglutamate SynthaseDIHYDROFOLATE SYNTHASE FROM
YERSINIA PESTIS C092
pdb|3PYZ|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
SynthaseDIHYDROFOLATE SYNTHASE COMPLEXED WITH AMPPNP AND
MN ION FROM Yersinia Pestis C092
pdb|3QCZ|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
SynthaseDIHYDROFOLATE SYNTHASE WITH MN, AMPPNP AND
L-Glutamate Bound
Length = 437
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 7/126 (5%)
Query: 5 FSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYV 64
+SSPHL+ ER+++ G+ +S + + F + + + YF+F T+ + +
Sbjct: 84 YSSPHLLRYTERVRIQGQELSEAEHSHSFAQI------EAGRGDISLTYFEFGTLSALQL 137
Query: 65 FVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK 124
F + K D VI+EVG+GGR D TNI+ ++ V ITS+ DHT LG E I +KAG+ +
Sbjct: 138 FKQAKLDVVILEVGLGGRLDATNIV-DSDVAAITSIALDHTDWLGYDRESIGREKAGVFR 196
Query: 125 PNCIAV 130
AV
Sbjct: 197 GGKPAV 202
>pdb|2GCB|A Chain A, G51sS52T DOUBLE MUTANT OF L. CASEI FPGS
Length = 428
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 4/131 (3%)
Query: 4 FFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDM-PAYFKFLTVMSF 62
++SP ++ ERI ++ EPI V AL ++ D F+F+T + +
Sbjct: 70 LYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALGY 129
Query: 63 YVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGI-TSLGYDHTAVLGNTIEEITMQKAG 121
+ F + + D ++EVGIGG D+TN+I T VV + TS+ DH +LG+TI I KAG
Sbjct: 130 WYFRQRQVDVAVIEVGIGGDTDSTNVI--TPVVSVLTSVALDHQKLLGHTITAIAKHKAG 187
Query: 122 IMKPNCIAVTS 132
I+K VT
Sbjct: 188 IIKRGIPVVTG 198
>pdb|1W78|A Chain A, E.Coli Folc In Complex With Dhpp And Adp
pdb|1W7K|A Chain A, E.Coli Folc In Complex With Adp, Without Folate Substrate
Length = 422
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 7/126 (5%)
Query: 5 FSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYV 64
+SSPHL+ ER+++ G+ + T F + +A + YF++ T+ + ++
Sbjct: 81 YSSPHLVRYTERVRVQGQELPESAHTASFAEIESA------RGDISLTYFEYGTLSALWL 134
Query: 65 FVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK 124
F + + D VI+EVG+GGR D TNI+ + V +TS+ DHT LG E I + AGI +
Sbjct: 135 FKQAQLDVVILEVGLGGRLDATNIV-DADVAVVTSIALDHTDWLGPDRESIGREXAGIFR 193
Query: 125 PNCIAV 130
A+
Sbjct: 194 SEKPAI 199
>pdb|1FGS|A Chain A, Folylpolyglutamate Synthetase From Lactobacillus Casei
Length = 428
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 4/131 (3%)
Query: 4 FFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY-FKFLTVMSF 62
++SP ++ ERI ++ EPI V AL ++ D F+F+T +++
Sbjct: 70 LYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAY 129
Query: 63 YVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGI-TSLGYDHTAVLGNTIEEITMQKAG 121
+ F + + D ++EVGIGG D+TN+I T VV + T + DH +LG+TI I KAG
Sbjct: 130 WYFRQRQVDVAVIEVGIGGDTDSTNVI--TPVVSVLTEVALDHQKLLGHTITAIAKHKAG 187
Query: 122 IMKPNCIAVTS 132
I+K VT
Sbjct: 188 IIKRGIPVVTG 198
>pdb|2GCA|A Chain A, Apo Form Of L. Casei Fpgs
Length = 428
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
Query: 4 FFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDM-PAYFKFLTVMSF 62
++SP ++ ERI ++ EPI V AL ++ D F+F+T + +
Sbjct: 70 LYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALGY 129
Query: 63 YVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGI-TSLGYDHTAVLGNTIEEITMQKAG 121
+ F + + D ++EVGIGG D+TN+I T VV + T + DH +LG+TI I KAG
Sbjct: 130 WYFRQRQVDVAVIEVGIGGDTDSTNVI--TPVVSVLTEVALDHQKLLGHTITAIAKHKAG 187
Query: 122 IMKPNCIAVTS 132
I+K VT
Sbjct: 188 IIKRGIPVVTG 198
>pdb|1JBV|A Chain A, Fpgs-Amppcp Complex
pdb|1JBW|A Chain A, Fpgs-Amppcp-Folate Complex
Length = 428
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
Query: 4 FFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY-FKFLTVMSF 62
++SP ++ ERI ++ EPI V AL ++ D F+F+T +++
Sbjct: 70 LYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAY 129
Query: 63 YVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGI-TSLGYDHTAVLGNTIEEITMQKAG 121
+ F + + D ++EVGIGG D+TN+I T VV + T + DH +LG+TI I AG
Sbjct: 130 WYFRQRQVDVAVIEVGIGGDTDSTNVI--TPVVSVLTEVALDHQKLLGHTITAIAKHXAG 187
Query: 122 IMKPNCIAVTS 132
I+K VT
Sbjct: 188 IIKRGIPVVTG 198
>pdb|2GC5|A Chain A, G51s Mutant Of L. Casei Fpgs
Length = 428
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 4 FFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDM-PAYFKFLTVMSF 62
++SP ++ ERI ++ EPI V AL ++ D F+F+T + +
Sbjct: 70 LYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALGY 129
Query: 63 YVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGI-TSLGYDHTAVLGNTIEEITMQKAG 121
+ F + + D ++EVGIGG D+TN+I T VV + T + DH +LG+TI I AG
Sbjct: 130 WYFRQRQVDVAVIEVGIGGDTDSTNVI--TPVVSVLTEVALDHQKLLGHTITAIAKHXAG 187
Query: 122 IMKPNCIAVTS 132
I+K VT
Sbjct: 188 IIKRGIPVVTG 198
>pdb|2GC6|A Chain A, S73a Mutant Of L. Casei Fpgs
Length = 428
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 4 FFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY-FKFLTVMSF 62
+++P ++ ERI ++ EPI V AL ++ D F+F+T + +
Sbjct: 70 LYTAPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALGY 129
Query: 63 YVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGI-TSLGYDHTAVLGNTIEEITMQKAG 121
+ F + + D ++EVGIGG D+TN+I T VV + T + DH +LG+TI I AG
Sbjct: 130 WYFRQRQVDVAVIEVGIGGDTDSTNVI--TPVVSVLTEVALDHQKLLGHTITAIAKHXAG 187
Query: 122 IMKPNCIAVTS 132
I+K VT
Sbjct: 188 IIKRGIPVVTG 198
>pdb|2VOR|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis
Folylpolyglutamate Synthase Complexed With Adp And
Amppcp
Length = 487
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 14/164 (8%)
Query: 6 SSPHLIEVRERIKLNGEPISYDKFTKYFWTVYN--ALHAKRKHA---EDMPAYFKF--LT 58
+SPHL ERI ++G+PIS ++ + + AL ++ A + PA KF LT
Sbjct: 97 TSPHLQSPVERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLT 156
Query: 59 VMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQ 118
M+F F D ++EVG+GGR+D TN+I N V IT + DH LG I I +
Sbjct: 157 AMAFAAFADAPVDVAVVEVGMGGRWDATNVI-NAPVAVITPISIDHVDYLGADIAGIAGE 215
Query: 119 KAGIM------KPNCIAVTSANQRGPCKQILLETSRALNCVLLE 156
KAGI+ P+ +AV + +L E+ RA V E
Sbjct: 216 KAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVARE 259
>pdb|2VOS|A Chain A, Mycobacterium Tuberculosis Folylpolyglutamate Synthase
Complexed With Adp
Length = 487
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 14/164 (8%)
Query: 6 SSPHLIEVRERIKLNGEPISYDKFTKYFWTVYN--ALHAKRKHA---EDMPAYFKF--LT 58
+SPHL ERI ++G+PIS ++ + + AL ++ A + PA KF LT
Sbjct: 97 TSPHLQSPVERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAXSKFEVLT 156
Query: 59 VMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQ 118
+F F D ++EVG GGR+D TN+I N V IT + DH LG I I +
Sbjct: 157 AXAFAAFADAPVDVAVVEVGXGGRWDATNVI-NAPVAVITPISIDHVDYLGADIAGIAGE 215
Query: 119 KAGIM------KPNCIAVTSANQRGPCKQILLETSRALNCVLLE 156
KAGI+ P+ +AV + +L E+ RA V E
Sbjct: 216 KAGIITRAPDGSPDTVAVIGRQVPKVXEVLLAESVRADASVARE 259
>pdb|1PDU|A Chain A, Ligand-Binding Domain Of Drosophila Orphan Nuclear
Receptor Dhr38
pdb|1PDU|B Chain B, Ligand-Binding Domain Of Drosophila Orphan Nuclear
Receptor Dhr38
Length = 244
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 30/63 (47%)
Query: 27 DKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNT 86
DK +++ + +++ ++ AE +P YF L +F + ++ + R D+T
Sbjct: 47 DKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRARIDDT 106
Query: 87 NII 89
+I
Sbjct: 107 KLI 109
>pdb|2AJT|A Chain A, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2AJT|B Chain B, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2AJT|C Chain C, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2HXG|A Chain A, Crystal Structure Of Mn2+ Bound Ecai
pdb|2HXG|B Chain B, Crystal Structure Of Mn2+ Bound Ecai
pdb|2HXG|C Chain C, Crystal Structure Of Mn2+ Bound Ecai
Length = 500
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 64 VFVKEKPDAVIMEVGIGGRYDNTNIIPNTA-----VVGITSLGYDHTAVLGNTIEEI 115
+ V+EKP + +GIGG+ D +I NT V + LG D +L N I+ +
Sbjct: 358 IAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLG-DRYRLLVNCIDTV 413
>pdb|4F2D|A Chain A, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
pdb|4F2D|B Chain B, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
pdb|4F2D|C Chain C, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
Length = 500
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 64 VFVKEKPDAVIMEVGIGGRYDNTNIIPNTA-----VVGITSLGYDHTAVLGNTIEEI 115
+ V+EKP + +GIGG+ D +I NT V + LG D +L N I+ +
Sbjct: 358 IAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLG-DRYRLLVNCIDTV 413
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,394,331
Number of Sequences: 62578
Number of extensions: 314571
Number of successful extensions: 680
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 15
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)