Query psy1839
Match_columns 304
No_of_seqs 259 out of 1841
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 17:39:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0285 FolC Folylpolyglutamat 100.0 1.3E-60 2.8E-65 462.0 24.3 285 2-296 73-423 (427)
2 PLN02913 dihydrofolate synthet 100.0 1.3E-57 2.8E-62 453.8 27.7 295 1-295 103-509 (510)
3 TIGR01499 folC folylpolyglutam 100.0 3.3E-57 7.1E-62 438.4 26.0 280 2-294 47-397 (397)
4 PLN02881 tetrahydrofolylpolygl 100.0 2.1E-55 4.6E-60 435.0 25.7 294 2-296 90-530 (530)
5 PRK10846 bifunctional folylpol 100.0 1.1E-52 2.4E-57 409.4 24.9 276 2-295 78-415 (416)
6 KOG2525|consensus 100.0 2.2E-53 4.7E-58 408.1 18.0 295 2-298 101-496 (496)
7 COG0769 MurE UDP-N-acetylmuram 100.0 2.6E-32 5.7E-37 269.4 16.1 226 48-285 140-449 (475)
8 PRK11929 putative bifunctional 100.0 1.1E-28 2.3E-33 262.8 15.5 223 51-286 163-475 (958)
9 PRK00139 murE UDP-N-acetylmura 100.0 3.3E-28 7.2E-33 240.2 16.7 220 51-285 144-434 (460)
10 TIGR02068 cya_phycin_syn cyano 100.0 2.4E-27 5.1E-32 249.4 19.8 218 60-284 533-850 (864)
11 PRK14022 UDP-N-acetylmuramoyla 99.9 1.8E-25 3.8E-30 221.9 17.1 206 65-284 173-455 (481)
12 TIGR01143 murF UDP-N-acetylmur 99.9 7.4E-25 1.6E-29 213.7 14.3 206 65-287 121-409 (417)
13 TIGR01085 murE UDP-N-acetylmur 99.9 3E-24 6.6E-29 212.0 15.7 226 50-284 135-447 (464)
14 PRK14093 UDP-N-acetylmuramoyla 99.9 3.1E-23 6.7E-28 205.9 13.7 214 68-294 158-464 (479)
15 PRK01438 murD UDP-N-acetylmura 99.9 5.1E-22 1.1E-26 196.9 16.4 206 66-281 167-450 (480)
16 PRK00421 murC UDP-N-acetylmura 99.9 1E-21 2.2E-26 193.9 15.1 212 68-293 154-452 (461)
17 PRK10773 murF UDP-N-acetylmura 99.9 8.2E-22 1.8E-26 194.4 13.9 210 67-294 149-447 (453)
18 PRK01390 murD UDP-N-acetylmura 99.9 3E-21 6.4E-26 190.5 15.6 200 68-281 160-432 (460)
19 PRK14106 murD UDP-N-acetylmura 99.9 4E-21 8.6E-26 188.7 15.9 203 68-285 155-428 (450)
20 PRK11929 putative bifunctional 99.9 2.5E-21 5.4E-26 206.5 14.7 205 67-287 655-949 (958)
21 PRK04308 murD UDP-N-acetylmura 99.8 1.9E-20 4.1E-25 184.0 16.3 203 68-287 159-428 (445)
22 PRK11930 putative bifunctional 99.8 8.1E-21 1.8E-25 199.6 14.4 206 67-287 156-445 (822)
23 COG0770 MurF UDP-N-acetylmuram 99.8 2.8E-20 6E-25 182.6 14.9 211 67-295 152-449 (451)
24 PRK02705 murD UDP-N-acetylmura 99.8 7.1E-20 1.5E-24 180.4 16.5 200 66-280 158-428 (459)
25 PRK03803 murD UDP-N-acetylmura 99.8 1.5E-19 3.2E-24 177.9 16.4 202 68-287 153-429 (448)
26 TIGR01087 murD UDP-N-acetylmur 99.8 2.1E-19 4.7E-24 175.8 16.8 200 68-283 148-410 (433)
27 PRK00141 murD UDP-N-acetylmura 99.8 2.3E-19 4.9E-24 178.0 12.9 199 67-281 167-440 (473)
28 PRK02006 murD UDP-N-acetylmura 99.8 1E-18 2.2E-23 174.2 16.0 203 70-287 174-473 (498)
29 PRK02472 murD UDP-N-acetylmura 99.8 1.3E-18 2.9E-23 170.7 15.4 200 68-283 155-420 (447)
30 TIGR01081 mpl UDP-N-acetylmura 99.8 1.1E-18 2.4E-23 171.8 14.3 214 69-293 150-443 (448)
31 PRK04690 murD UDP-N-acetylmura 99.8 1.2E-18 2.6E-23 172.7 14.1 201 68-280 162-428 (468)
32 PRK03369 murD UDP-N-acetylmura 99.8 2.4E-18 5.3E-23 171.3 15.7 210 67-286 161-468 (488)
33 PRK03806 murD UDP-N-acetylmura 99.8 4E-18 8.6E-23 167.2 15.7 198 66-282 148-412 (438)
34 TIGR01082 murC UDP-N-acetylmur 99.8 4.5E-18 9.8E-23 167.5 14.7 208 70-289 148-443 (448)
35 PRK01710 murD UDP-N-acetylmura 99.7 3.3E-17 7.1E-22 161.9 16.4 200 68-282 164-433 (458)
36 PRK01368 murD UDP-N-acetylmura 99.7 2.1E-17 4.6E-22 163.2 13.5 206 68-286 148-428 (454)
37 PRK14573 bifunctional D-alanyl 99.7 1.5E-17 3.3E-22 174.8 12.0 220 69-296 151-449 (809)
38 PRK04663 murD UDP-N-acetylmura 99.6 5.7E-15 1.2E-19 145.2 14.1 199 67-287 152-420 (438)
39 COG0771 MurD UDP-N-acetylmuram 99.5 2.2E-13 4.8E-18 133.3 15.7 198 67-280 156-419 (448)
40 PRK00683 murD UDP-N-acetylmura 99.5 8.1E-14 1.7E-18 136.3 12.1 206 69-286 147-396 (418)
41 PRK03815 murD UDP-N-acetylmura 99.5 2.4E-13 5.2E-18 132.5 13.4 195 67-282 130-376 (401)
42 PF08245 Mur_ligase_M: Mur lig 99.4 2.3E-12 5E-17 112.0 10.3 96 59-161 38-138 (188)
43 COG0773 MurC UDP-N-acetylmuram 99.2 6E-11 1.3E-15 115.8 11.8 192 91-292 174-455 (459)
44 PRK14016 cyanophycin synthetas 99.0 1.4E-09 3.1E-14 113.4 9.6 92 64-160 538-633 (727)
45 PF02875 Mur_ligase_C: Mur lig 98.8 8.4E-10 1.8E-14 85.4 -1.0 62 174-237 1-84 (91)
46 COG1703 ArgK Putative periplas 77.7 7.5 0.00016 36.9 6.7 72 54-137 128-201 (323)
47 KOG4300|consensus 51.6 52 0.0011 29.8 6.4 90 14-126 34-125 (252)
48 cd05026 S-100Z S-100Z: S-100Z 47.8 51 0.0011 25.1 5.2 40 22-61 27-80 (93)
49 PF12419 DUF3670: SNF2 Helicas 45.4 77 0.0017 26.2 6.3 27 9-35 69-95 (141)
50 TIGR02667 moaB_proteo molybden 41.9 68 0.0015 27.3 5.6 49 238-286 24-75 (163)
51 PF03308 ArgK: ArgK protein; 40.8 33 0.00071 31.9 3.6 74 57-141 109-184 (266)
52 cd00885 cinA Competence-damage 40.7 65 0.0014 27.6 5.3 50 238-287 21-71 (170)
53 PRK01215 competence damage-ind 35.1 86 0.0019 29.0 5.5 50 238-287 25-75 (264)
54 PRK10646 ADP-binding protein; 34.5 85 0.0018 26.6 4.9 47 257-303 8-61 (153)
55 COG1635 THI4 Ribulose 1,5-bisp 30.7 1.1E+02 0.0024 28.1 5.2 83 19-109 8-93 (262)
56 PRK00549 competence damage-ind 28.6 1.4E+02 0.003 29.5 6.0 50 238-287 22-72 (414)
57 PF15103 G0-G1_switch_2: G0/G1 27.3 56 0.0012 25.9 2.4 34 259-296 3-38 (102)
58 PRK03670 competence damage-ind 26.0 1.7E+02 0.0037 26.9 5.7 49 238-286 22-72 (252)
59 cd00758 MoCF_BD MoCF_BD: molyb 25.9 1.6E+02 0.0036 23.7 5.2 49 238-286 21-70 (133)
60 COG1564 THI80 Thiamine pyropho 25.7 77 0.0017 28.5 3.4 32 50-85 76-107 (212)
61 PF06535 RGM_N: Repulsive guid 25.3 24 0.00053 30.2 0.1 18 2-19 102-119 (161)
62 TIGR00200 cinA_nterm competenc 24.9 1.7E+02 0.0036 29.0 5.9 49 238-286 22-71 (413)
63 PF13623 SurA_N_2: SurA N-term 24.3 1.1E+02 0.0023 25.7 3.8 26 17-42 42-67 (145)
64 PF03445 DUF294: Putative nucl 24.2 4E+02 0.0086 21.8 8.0 72 60-133 38-115 (138)
65 cd03114 ArgK-like The function 24.0 1.8E+02 0.0039 24.0 5.2 61 63-133 85-146 (148)
66 PF12427 DUF3665: Branched-cha 22.0 89 0.0019 17.8 1.9 14 232-245 9-22 (23)
67 PRK09417 mogA molybdenum cofac 21.9 2.4E+02 0.0051 24.8 5.7 50 238-287 25-79 (193)
68 PF02080 TrkA_C: TrkA-C domain 21.6 85 0.0019 21.9 2.4 23 273-295 49-71 (71)
69 PF09954 DUF2188: Uncharacteri 21.0 90 0.0019 21.8 2.3 31 254-284 22-53 (62)
70 TIGR00177 molyb_syn molybdenum 20.9 1.3E+02 0.0028 24.8 3.7 48 239-286 30-78 (144)
71 cd05023 S-100A11 S-100A11: S-1 20.8 2.6E+02 0.0056 21.1 5.0 40 23-62 27-80 (89)
72 PF03686 UPF0146: Uncharacteri 20.8 1.4E+02 0.0029 24.7 3.6 86 67-160 11-104 (127)
No 1
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.3e-60 Score=461.97 Aligned_cols=285 Identities=30% Similarity=0.459 Sum_probs=237.5
Q ss_pred ceeecCCCCCCCcceeEECCeeCCHHHHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhCCCCEEEEeecCCC
Q psy1839 2 TRFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGG 81 (304)
Q Consensus 2 vG~ftSPhl~~~~ERi~ing~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~s~fE~~t~~A~~~f~~~~vd~aVlE~GlgG 81 (304)
||+||||||.+|+|||+|||++||++++.+++++|.+..+... ...|||||++|++||.+|.+++||++||||||||
T Consensus 73 VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ve~~~~~~~---~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGG 149 (427)
T COG0285 73 VGVYTSPHLLSFNERIRINGEPISDEELAAAFERVEEAAGSLD---LISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGG 149 (427)
T ss_pred ceEECCCccCccceEEEECCEECCHHHHHHHHHHHHHHhcccc---cCCCcHHHHHHHHHHHHHHhCCCCEEEEeccccc
Confidence 8999999999999999999999999999999998876554331 3679999999999999999999999999999999
Q ss_pred ccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHHHHHhhCCeEEEeCCCc
Q psy1839 82 RYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL 161 (304)
Q Consensus 82 r~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~~a~~~~~~~~~~~~~~ 161 (304)
|+|+||+++ |.++||||||+||+++||+|+|+||++|+||||++.|+|+...+.|.+.+++++.|.+.++++..++.++
T Consensus 150 RlDATNVi~-p~vsvIT~I~lDH~~~LG~tie~IA~EKAGI~k~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~~ 228 (427)
T COG0285 150 RLDATNVIE-PDVSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPDF 228 (427)
T ss_pred cccchhccC-CceEEEcccChhHHHHhCCcHHHHHHHhhhhccCCCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccch
Confidence 999999997 9999999999999999999999999999999999999999884568899999999999999887775432
Q ss_pred c-------cccCC--------------------------------C---------cc-cccccCceeeeeCCceeccCCC
Q psy1839 162 N-------YRWRG--------------------------------Q---------PL-DEDWKNRFGVKLDSRTAAPNGG 192 (304)
Q Consensus 162 ~-------~~~~~--------------------------------~---------~l-~~~~~GR~e~~~~~~~v~vD~A 192 (304)
. +.+.+ . ++ ...||||||++..+|.+++|+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~lp~l~~~~Q~~NAa~Ai~al~~l~~~i~~~~i~~gl~~~~wpGR~e~l~~~p~i~lDgA 308 (427)
T COG0285 229 QVLEEGNGFSFQGGGGLLDLPLPLLGGHHQIENAALAIAALEALGKEISEEAIRKGLANVDWPGRLERLSENPLILLDGA 308 (427)
T ss_pred hhccccceEEEecCCeeeeeccccccchhHHHHHHHHHHHHHHhcccCCHHHHHHHHHhCcCCceEEEecCCCeEEEECC
Confidence 1 11110 0 01 1589999999987799999999
Q ss_pred CCCCcccc-cccCCC-CC--C-------CCCCchhHHhc---CC-CCeEEEecCCCCcch--HHHHHHHHhhcCCCCcEE
Q psy1839 193 HEPGRPNV-GQGGGG-FQ--S-------RSGDNSIRSNA---NP-LSSVDCHNVNDQSNS--FHKIATVASALSQRSKVV 255 (304)
Q Consensus 193 Hnp~al~~-l~~l~~-~~--~-------~~~d~~~r~~~---~~-~d~vi~T~~~dnpr~--~~ii~~~~~g~~~~~~~~ 255 (304)
|||+|+++ .++|+. +. . -..|||....+ .+ -+.+++|.+ +.||. ++.+.+.........
T Consensus 309 HNp~aa~~La~~l~~~~~~~~~~~~v~g~l~dKd~~~~l~~L~~~~~~~~~~~~-~~~ra~~~~~l~~~~~~~~~~~--- 384 (427)
T COG0285 309 HNPHAARALAETLKTLFNDRPRLTLVFGMLKDKDIAGMLAALLPIVDEIYTTPL-PWPRALDAEELLAFAGERGGVE--- 384 (427)
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEEEeecCCCHHHHHHHhhccCcEEEEccC-CCcccCCHHHHHHHHHhhcCCc---
Confidence 99999999 777754 32 1 16788887433 33 377888874 56666 777777766544211
Q ss_pred EeCCHHHHHHHHhhcCCCCCcEEEEecchhhHHHHHHHhcC
Q psy1839 256 EFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVLSN 296 (304)
Q Consensus 256 ~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~lv~~~~~~l~~ 296 (304)
..|.++|++.+....+ ++|.||||||||++|++++++.+
T Consensus 385 -~~~~~~a~~~~~~~~~-~~~~ilV~GSly~~~ev~~~~~~ 423 (427)
T COG0285 385 -LDDVAEALELALEKAD-EDDLVLVTGSLYLAGEVLELLKK 423 (427)
T ss_pred -cccHHHHHHHHHHhcC-CCCeEEEEecHHHHHHHHHHhhc
Confidence 6899999999988774 68999999999999999999865
No 2
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=1.3e-57 Score=453.83 Aligned_cols=295 Identities=24% Similarity=0.340 Sum_probs=235.9
Q ss_pred CceeecCCCCCCCcceeEEC--CeeCCHHHHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhCCCCEEEEeec
Q psy1839 1 MTRFFSSPHLIEVRERIKLN--GEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVG 78 (304)
Q Consensus 1 ~vG~ftSPhl~~~~ERi~in--g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~s~fE~~t~~A~~~f~~~~vd~aVlE~G 78 (304)
.||+||||||+++||||+|| |++||+++|.+++++|++.+++........|||||++|++||.+|.+++||++|||||
T Consensus 103 ~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVlEvG 182 (510)
T PLN02913 103 SVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAG 182 (510)
T ss_pred CeEEECCCCCceeceEEEECCCCCcCCHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEEEec
Confidence 38999999999999999999 9999999999999999998876532233479999999999999999999999999999
Q ss_pred CCCccccccccCC--CcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHHHHHhhCCeEEE
Q psy1839 79 IGGRYDNTNIIPN--TAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLE 156 (304)
Q Consensus 79 lgGr~d~tn~~~~--~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~~a~~~~~~~~~ 156 (304)
||||+|+||++.. |+++||||||+||+++||+|+|+||++|++||+++.++|++.++.+....++++.|++.+++++.
T Consensus 183 lGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~Tle~IA~eKagIik~g~pvV~~~~~~~~~~~vi~~~a~~~~a~l~~ 262 (510)
T PLN02913 183 LGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGRPVVLGGPFLPHIESILRDKASSMNSPVVS 262 (510)
T ss_pred CCCCcccccccCCCCCcEEEEccccHHHHhhhcccHHHHHHHHhhhccCCCCEEECCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999963 58999999999999999999999999999999999999998525577788888888888877665
Q ss_pred eC-CCc---------------cc--------------------ccC--C----------------C-----cc-------
Q psy1839 157 AP-SIL---------------NY--------------------RWR--G----------------Q-----PL------- 170 (304)
Q Consensus 157 ~~-~~~---------------~~--------------------~~~--~----------------~-----~l------- 170 (304)
++ .+. .+ .+. + . .+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~G~hq~~Naa~Alaa~~~L~~~~~~i~~~~I~~ 342 (510)
T PLN02913 263 ASDPGVRSSIKGIITDNGKPCQSCDIVIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCLRDQGWRISDASIRA 342 (510)
T ss_pred eccccccceeecccccCCceeEEeccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 52 100 00 000 0 0 01
Q ss_pred ---cccccCceeeeeC---------CceeccCCCCCCCcccc-cccCCC-CC-CC-------CCCchhHHhc----CC--
Q psy1839 171 ---DEDWKNRFGVKLD---------SRTAAPNGGHEPGRPNV-GQGGGG-FQ-SR-------SGDNSIRSNA----NP-- 222 (304)
Q Consensus 171 ---~~~~~GR~e~~~~---------~~~v~vD~AHnp~al~~-l~~l~~-~~-~~-------~~d~~~r~~~----~~-- 222 (304)
...||||||++.. ++.+++||||||+|+++ +++|+. ++ ++ ++||+.+.++ ..
T Consensus 343 gL~~~~~pGR~E~i~~~~~~~~~~~~~~vIlDgAHNp~s~~al~~~L~~~~~~~ki~~V~gml~DKd~~~~l~~l~~~~~ 422 (510)
T PLN02913 343 GLENTNLLGRSQFLTSKEAEVLGLPGATVLLDGAHTKESAKALVDTIKTAFPEARLALVVAMASDKDHLAFASEFLSGLK 422 (510)
T ss_pred HHHhCCCCCceEEeeccccccccCCCCEEEEECCCCHHHHHHHHHHHHHhcCCCCEEEEEEccCCCCHHHHHHHHhcccC
Confidence 1369999999742 45899999999999999 888865 54 23 7899987322 32
Q ss_pred CCeEEEecCCC---Ccch--HHHHHHHHhhcCCCCcEE--------EeCCHHHHHHHHhhcCC-CCCcEEEEecchhhHH
Q psy1839 223 LSSVDCHNVND---QSNS--FHKIATVASALSQRSKVV--------EFSSVLDTYNFKYGLDP-SKEYHILVTGSLHLVG 288 (304)
Q Consensus 223 ~d~vi~T~~~d---npr~--~~ii~~~~~g~~~~~~~~--------~~~dr~~AI~~a~~~a~-~~~d~VlvaGSl~lv~ 288 (304)
+|.+++|.+++ +||. ++.+++.+........+. .+++..+|+..+.+.+. .++|.|||||||||||
T Consensus 423 ~d~v~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~v~GSlylv~ 502 (510)
T PLN02913 423 PEAVFLTEADIAGGKSRSTSASALKEAWIKAAPELGIETLLAENNSLLKSLVDASAILRKARTLDPSSVVCVTGSLHIVS 502 (510)
T ss_pred CCEEEEEcCCCCCCCCCCCCHHHHHHHHHHhccccCceeeccccccccCCHHHHHHHHHHhcccCCCCEEEEeCcHHHHH
Confidence 69999998443 5777 777888775543221222 37899999999987761 2679999999999999
Q ss_pred HHHHHhc
Q psy1839 289 AFLNVLS 295 (304)
Q Consensus 289 ~~~~~l~ 295 (304)
.++.+|-
T Consensus 503 ~v~~~~~ 509 (510)
T PLN02913 503 AVLASLQ 509 (510)
T ss_pred HHHHHhc
Confidence 9999874
No 3
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=3.3e-57 Score=438.42 Aligned_cols=280 Identities=30% Similarity=0.485 Sum_probs=225.4
Q ss_pred ceeecCCCCCCCcceeEECCeeCCHHHHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhCCCCEEEEeecCCC
Q psy1839 2 TRFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGG 81 (304)
Q Consensus 2 vG~ftSPhl~~~~ERi~ing~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~s~fE~~t~~A~~~f~~~~vd~aVlE~GlgG 81 (304)
||+||||||.+++|||+|||++|++++|.+++++|++..++. ..+||+||++|++||.+|.+++||++|||+||||
T Consensus 47 vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~v~~~~~~~----~~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlgg 122 (397)
T TIGR01499 47 VGLFTSPHLVSFNERIRINGEPISDEELAQAFEQVRPILEKL----SQQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGG 122 (397)
T ss_pred eeEEeCCCcCccceEEEECCEECCHHHHHHHHHHHHHHHHhc----cCCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCC
Confidence 899999999999999999999999999999999999877643 2479999999999999999999999999999999
Q ss_pred ccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHHHHHhhCCeEEEeCCCc
Q psy1839 82 RYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL 161 (304)
Q Consensus 82 r~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~~a~~~~~~~~~~~~~~ 161 (304)
|+|+||++. |+++||||||+||+++||+|+|+||++|++||+++.++|+|. |++.+..++++.+...+++++.++.+.
T Consensus 123 rld~tn~i~-p~vaViTnI~~DHl~~lG~t~e~ia~~Ka~I~k~~~~~v~~~-d~~~~~~~~~~~a~~~~~~~~~~~~~~ 200 (397)
T TIGR01499 123 RLDATNVIE-PLVSVITSIGLDHTEILGDTLEEIAWEKAGIIKEGVPIVTGP-QEPEALNVLKKKAQEKGAPLFVVGRDF 200 (397)
T ss_pred CcccccccC-CCeEEEccccHHHHHHhCccHHHHHHHHhCccCCCCCEEEcC-CChHHHHHHHHHHHHcCCCEEEeccce
Confidence 999999996 999999999999999999999999999999999999999999 888888888777766666665554210
Q ss_pred ----------cc----------c--cC------------------CCc------------c-cccccCceeeeeC-Ccee
Q psy1839 162 ----------NY----------R--WR------------------GQP------------L-DEDWKNRFGVKLD-SRTA 187 (304)
Q Consensus 162 ----------~~----------~--~~------------------~~~------------l-~~~~~GR~e~~~~-~~~v 187 (304)
.+ . .. +.. + ...||||||++.. ++.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~N~~~Aiaa~~~lg~~~~~i~~~~i~~~L~~~~~pGR~e~i~~~~~~v 280 (397)
T TIGR01499 201 NYSETDENYLSFSGANLFLEPLALSLLGDHQAENAALALAALEVLGKQRPKLSEEAIRKGLANTIWPGRLEILSEDNPNI 280 (397)
T ss_pred eecccccceEEeecccccccccCCCCCCHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhCCCCceEEEEecCCCEE
Confidence 00 0 00 000 0 1259999999854 5889
Q ss_pred ccCCCCCCCcccc-cccCCC-CCC-C-------CCCchhH---HhcCC-CCe-EEEecCCCCcch--HHHHHHHHhhcCC
Q psy1839 188 APNGGHEPGRPNV-GQGGGG-FQS-R-------SGDNSIR---SNANP-LSS-VDCHNVNDQSNS--FHKIATVASALSQ 250 (304)
Q Consensus 188 ~vD~AHnp~al~~-l~~l~~-~~~-~-------~~d~~~r---~~~~~-~d~-vi~T~~~dnpr~--~~ii~~~~~g~~~ 250 (304)
++||||||+|+++ +++++. +.+ + .+|||.. +.+.+ ++. +++|. +||||. ++.+.+.....
T Consensus 281 iiD~AHNp~a~~~~l~~l~~~~~~~~i~~V~G~~~dkd~~~~~~~l~~~~~~d~~~~~-~~~~r~~~~~~i~~~~~~~-- 357 (397)
T TIGR01499 281 LLDGAHNPHSAEALAEWFKKRFNGRPIILLFGALADKDAAAMLAPLKPVVDKEVFVTP-FDYPRADDAADLAALAETF-- 357 (397)
T ss_pred EEECCCCHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCCHHHHHHHHhhccCcEEEEEC-CCCCCCCCHHHHHHHHHHc--
Confidence 9999999999999 988854 222 2 4566654 33344 554 65555 589998 55444433321
Q ss_pred CCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhhHHHHHHHh
Q psy1839 251 RSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVL 294 (304)
Q Consensus 251 ~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~lv~~~~~~l 294 (304)
.+..++|+++||+.|+ .++ ++|+|||||||||+|++++++
T Consensus 358 --~~~~~~~~~~ai~~a~-~~~-~~d~vlv~GSlyl~~~~~~~~ 397 (397)
T TIGR01499 358 --GKETVEDWREALALAL-NAS-AEDDILVTGSLYLVGEVRKLL 397 (397)
T ss_pred --CceecCCHHHHHHHHH-hCC-CCCEEEEEccHHHHHHHHHhC
Confidence 1456899999999998 775 889999999999999999764
No 4
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=2.1e-55 Score=435.01 Aligned_cols=294 Identities=32% Similarity=0.499 Sum_probs=234.1
Q ss_pred ceeecCCCCCCCcceeEECCeeCCHHHHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhCCCCEEEEeecCCC
Q psy1839 2 TRFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGG 81 (304)
Q Consensus 2 vG~ftSPhl~~~~ERi~ing~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~s~fE~~t~~A~~~f~~~~vd~aVlE~GlgG 81 (304)
||+||||||.++||||+|||++|++++|.++++++|+.++.........|+|||++|++||.+|.+++||++|||+||||
T Consensus 90 vGl~tSPhL~~~rERiring~~Is~e~f~~~f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlEvGlgG 169 (530)
T PLN02881 90 TGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGG 169 (530)
T ss_pred EEEECCCccCcceeEEEECCEecCHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 89999999999999999999999999999999999999986532223359999999999999999999999999999999
Q ss_pred ccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHHHHHhhCCeEEEeCCCc
Q psy1839 82 RYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL 161 (304)
Q Consensus 82 r~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~~a~~~~~~~~~~~~~~ 161 (304)
|+|+||++.+|+++||||||.||+++||+|+|+||++|++||+++.++|+.. +++++.++++++|++.+++++.++...
T Consensus 170 r~DaTnvi~~p~v~vITnIg~DH~~~LG~Tle~IA~~KagI~k~g~p~vt~~-q~~ea~~vl~~~A~e~~a~l~~v~~~~ 248 (530)
T PLN02881 170 RLDATNVVQKPVVCGITSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVP-QPDEAMRVLEERASELGVPLQVVEPLD 248 (530)
T ss_pred CchhhhccCCCCEEEEccccHHHHHhhcCCHHHHHHHHHHHHhcCCCEEEeC-CChHHHHHHHHHHHHhCCcEEEecccc
Confidence 9999999877999999999999999999999999999999999999999998 889999999999999999988765321
Q ss_pred c-------cccC-------------------C-------------C--------cc-cccccCceeeeeC---------C
Q psy1839 162 N-------YRWR-------------------G-------------Q--------PL-DEDWKNRFGVKLD---------S 184 (304)
Q Consensus 162 ~-------~~~~-------------------~-------------~--------~l-~~~~~GR~e~~~~---------~ 184 (304)
. +.+. . . ++ ...||||||++.. +
T Consensus 249 ~~~~~~~~l~L~G~~Q~~NaalAla~~~~~l~~~~~~~~~~~~~~~~l~~~i~~GL~~~~wpGR~e~v~~~~~~~~~~~~ 328 (530)
T PLN02881 249 SYGLSGLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEEFEALLQAGTLPEQFIKGLSTASLQGRAQVVPDSYINSEDSGD 328 (530)
T ss_pred cceecccCCCCCChhHHHhHHHHHHHHHHHHhhccccccccccccCCCHHHHHHHHHhCCCCceEEEeccccccccCCCC
Confidence 1 0000 0 0 00 1479999999843 4
Q ss_pred ceeccCCCCCCCcccc-cccCCC-----C----------------------C--------CCCCCchhHH-------hcC
Q psy1839 185 RTAAPNGGHEPGRPNV-GQGGGG-----F----------------------Q--------SRSGDNSIRS-------NAN 221 (304)
Q Consensus 185 ~~v~vD~AHnp~al~~-l~~l~~-----~----------------------~--------~~~~d~~~r~-------~~~ 221 (304)
+.+++||||||+|+++ .+.++. . . +.++|||... .+.
T Consensus 329 ~~~~LDGAHNp~s~~~l~~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF~~~~dkD~~~lL~~L~~~~~ 408 (530)
T PLN02881 329 LVFYLDGAHSPESMEACARWFSSAIKGDEQSPGSGYGPHGGGGKSEDTESNKISEQILLFNCMSVRDPQLLLPPLANTCA 408 (530)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHHhcccccCCcccccccccccccccccccCCCCEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 5799999999999997 443311 1 0 1157777652 122
Q ss_pred ---C-CCe-EEEecCCC-------Ccch--------HHHHHHHHhhcC--C----------------------CCcEEEe
Q psy1839 222 ---P-LSS-VDCHNVND-------QSNS--------FHKIATVASALS--Q----------------------RSKVVEF 257 (304)
Q Consensus 222 ---~-~d~-vi~T~~~d-------npr~--------~~ii~~~~~g~~--~----------------------~~~~~~~ 257 (304)
. .|+ +|||+++. |+.. ...+++.|..+. . ..++.++
T Consensus 409 ~~~~~f~~aiF~~n~~~~~~~~~~~~~~~~~~~l~~q~~l~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 488 (530)
T PLN02881 409 SNGVPFKKALFVPNISVYNKVGSGLPVDDPQVDLSWQFTLQRVWESLIRGKAGAPADAVCEESASSGLNDGKSDENSAVF 488 (530)
T ss_pred hcCCCCCeEEEcCCccccCCCcccCCCcchhhhHHHHHHHHHHHHHhccccccccccccccccccccccCCCCCCceeEe
Confidence 1 444 56776521 2211 346788999884 2 1368889
Q ss_pred CCHHHHHHHHhhcCCCC---CcEEEEecchhhHHHHHHHhcC
Q psy1839 258 SSVLDTYNFKYGLDPSK---EYHILVTGSLHLVGAFLNVLSN 296 (304)
Q Consensus 258 ~dr~~AI~~a~~~a~~~---~d~VlvaGSl~lv~~~~~~l~~ 296 (304)
++.++||+++.+.+.+. .--|||||||||||++|++|++
T Consensus 489 ~si~~Ai~~~r~~~~~~~~~~~~vlVTGSlhLvG~~l~~l~~ 530 (530)
T PLN02881 489 PSLPLAIKWLRDCARENPSLRFQVLVTGSLHLVGDVLRLLKK 530 (530)
T ss_pred cCHHHHHHHHHHHhhhCCCcceEEEEecchhhhhHHHHHhcC
Confidence 99999999999887411 2369999999999999999975
No 5
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=1.1e-52 Score=409.41 Aligned_cols=276 Identities=25% Similarity=0.355 Sum_probs=220.1
Q ss_pred ceeecCCCCCCCcceeEECCeeCCHHHHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhCCCCEEEEeecCCC
Q psy1839 2 TRFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGG 81 (304)
Q Consensus 2 vG~ftSPhl~~~~ERi~ing~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~s~fE~~t~~A~~~f~~~~vd~aVlE~GlgG 81 (304)
||+||||||.+++|||+|||++|++++|.+.+.++.+..+ ...||+||++|++||.+|++++||++|||+||||
T Consensus 78 vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~------~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglgg 151 (416)
T PRK10846 78 VGVYSSPHLVRYTERVRIQGQELPESAHTASFAEIEAARG------DISLTYFEYGTLSALWLFKQAQLDVVILEVGLGG 151 (416)
T ss_pred ceEECCCCCCCcceEEEECCEECCHHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 8999999999999999999999999999999988876543 3369999999999999999999999999999999
Q ss_pred ccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHHHHHhhCCeEEEeCCC-
Q psy1839 82 RYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI- 160 (304)
Q Consensus 82 r~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~~a~~~~~~~~~~~~~- 160 (304)
|+|+||++. |+++|||||++||+++||+|+|+||++|++||+.++++|+|. ++. ..++...+++.+++++.++..
T Consensus 152 rld~tn~i~-p~vaviTnI~~DHld~lG~t~e~ia~~Ka~Iik~~~~~V~~~-~d~--~~~~~~~a~~~~~~~~~~~~~~ 227 (416)
T PRK10846 152 RLDATNIVD-ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAVVGE-PDM--PSTIADVAQEKGALLQRRGVDW 227 (416)
T ss_pred CchhhhccC-CCEEEECCccHHHHHHhcCCHHHHHHHHHhhhcCCCeEEECC-ccH--hHHHHHHHHHhCCcEEEeccee
Confidence 999999995 999999999999999999999999999999999988999987 542 233445566555554421110
Q ss_pred ------c------------cccc---C--------------CCcc----------cccccCceeeeeCCceeccCCCCCC
Q psy1839 161 ------L------------NYRW---R--------------GQPL----------DEDWKNRFGVKLDSRTAAPNGGHEP 195 (304)
Q Consensus 161 ------~------------~~~~---~--------------~~~l----------~~~~~GR~e~~~~~~~v~vD~AHnp 195 (304)
. .++. + +..+ ...||||||++...+.+++||||||
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~~~Aia~~~~~~~~i~~~~i~~~L~~~~~~gR~e~~~~~~~iI~D~AHNp 307 (416)
T PRK10846 228 NYSVTDHDWAFSDGDGTLENLPLPNVPLPNAATALAALRASGLEVSEQAIRDGIASAILPGRFQIVSESPRVILDVAHNP 307 (416)
T ss_pred eeeccCceEEEecCccccccCCccchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCceEEEEcCCCcEEEECCCCH
Confidence 0 0110 0 0001 1359999999876678999999999
Q ss_pred Ccccc-cccCCCCC--CC-------CCCchhHH---hcCC-CCeEEEecCCCCcch--HHHHHHHHhhcCCCCcEEEeCC
Q psy1839 196 GRPNV-GQGGGGFQ--SR-------SGDNSIRS---NANP-LSSVDCHNVNDQSNS--FHKIATVASALSQRSKVVEFSS 259 (304)
Q Consensus 196 ~al~~-l~~l~~~~--~~-------~~d~~~r~---~~~~-~d~vi~T~~~dnpr~--~~ii~~~~~g~~~~~~~~~~~d 259 (304)
+++++ +++|+.+. ++ .+|||+.. .+.+ +|.+++|. .++||. ++.+++.+.. ...++|
T Consensus 308 ~a~~~l~~~L~~~~~~~~ii~Vfg~~gdkd~~~~l~~L~~~~d~viv~~-~~~~r~~~~~~l~~~~~~------~~~~~~ 380 (416)
T PRK10846 308 HAAEYLTGRLKALPKNGRVLAVIGMLHDKDIAGTLACLKSVVDDWYCAP-LEGPRGATAEQLAEHLGN------GKSFDS 380 (416)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEeeCCCCHHHHHHHHhhhCCEEEEEC-CCCCCCCCHHHHHHHhhh------CcccCC
Confidence 99999 77775542 23 67888863 3444 78887776 367777 6777665542 235689
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecchhhHHHHHHHhc
Q psy1839 260 VLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVLS 295 (304)
Q Consensus 260 r~~AI~~a~~~a~~~~d~VlvaGSl~lv~~~~~~l~ 295 (304)
+++|+++|++.++ ++|+||||||+|++|++++++.
T Consensus 381 ~~~Ai~~a~~~a~-~gD~VLi~GS~~~~~~~~~~~~ 415 (416)
T PRK10846 381 VAQAWDAAMADAK-PEDTVLVCGSFHTVAHVMEVID 415 (416)
T ss_pred HHHHHHHHHHhcC-CCCEEEEECcHHHHHHHHHhhc
Confidence 9999999999996 8999999999999999998763
No 6
>KOG2525|consensus
Probab=100.00 E-value=2.2e-53 Score=408.11 Aligned_cols=295 Identities=38% Similarity=0.599 Sum_probs=232.1
Q ss_pred ceeecCCCCCCCcceeEECCeeCCHHHHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhCCCCEEEEeecCCC
Q psy1839 2 TRFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGG 81 (304)
Q Consensus 2 vG~ftSPhl~~~~ERi~ing~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~s~fE~~t~~A~~~f~~~~vd~aVlE~GlgG 81 (304)
||+||||||++.+|||||||+|||++.|.++|++++++++.....+...|+|||++|++||++|.+.+||+||+||||||
T Consensus 101 tG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVdvaViEvGlGG 180 (496)
T KOG2525|consen 101 TGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVDVAVIEVGLGG 180 (496)
T ss_pred cccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCCCchhhhhHhhhheeeeecCCcEEEEEecccc
Confidence 89999999999999999999999999999999999999998765567789999999999999999999999999999999
Q ss_pred ccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHHHHHhhCCeEEEeCCCc
Q psy1839 82 RYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL 161 (304)
Q Consensus 82 r~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~~a~~~~~~~~~~~~~~ 161 (304)
++|+||++.+|.+++||+||.||+++||+|+++||++|+||||.+.|+++-. +++++.++|+++|.+.+++++.+++..
T Consensus 181 ~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~gvpaft~~-q~~e~~nvL~~ra~e~~~~L~~v~p~~ 259 (496)
T KOG2525|consen 181 ELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKEGVPAFTVP-QPPEALNVLKERASELGVPLFVVPPLE 259 (496)
T ss_pred ccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhccccccCCceEEcC-CcHHHHHHHHHHHHhcCCCceecCCch
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999888776642
Q ss_pred ccc-------------cC----------------C------------C---------cc-cccccCceeeee--CCceec
Q psy1839 162 NYR-------------WR----------------G------------Q---------PL-DEDWKNRFGVKL--DSRTAA 188 (304)
Q Consensus 162 ~~~-------------~~----------------~------------~---------~l-~~~~~GR~e~~~--~~~~v~ 188 (304)
.+. |. + . ++ ...||||.+++. ++..++
T Consensus 260 ~~~ls~~~lgl~g~hq~~na~lA~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~GL~~~~wPGR~qil~~~~~~~~l 339 (496)
T KOG2525|consen 260 AYELSGVNLGLIGTHQWSNASLAVQLASEWLIQNGRVAEGVLDALQTSGLIPPAFLSGLASTDWPGRLQILEYGRGVTWL 339 (496)
T ss_pred hhhhcCCcccccccchhhhhHHHHHHHHHHHHhcCcccccCCCccccccCCCHHHhcchhhccCCCceEEEecCCCcEEE
Confidence 100 00 0 0 11 258999999985 356799
Q ss_pred cCCCCCCCccccc-ccCCC----CC--C-C------CCCchhH---HhcC-------CCCeE-EEecCCC-Cc-ch----
Q psy1839 189 PNGGHEPGRPNVG-QGGGG----FQ--S-R------SGDNSIR---SNAN-------PLSSV-DCHNVND-QS-NS---- 237 (304)
Q Consensus 189 vD~AHnp~al~~l-~~l~~----~~--~-~------~~d~~~r---~~~~-------~~d~v-i~T~~~d-np-r~---- 237 (304)
+||||||+||+++ .-++. +. . + .+|++-- +.+. ..+.| +++++.. +| +.
T Consensus 340 lDGAHt~eSaea~~~w~~~~~~~~~~~~~~illfn~t~~~d~~~Ll~~L~~~~~~~~~F~~Vvf~Pni~~~~~~~~~d~~ 419 (496)
T KOG2525|consen 340 LDGAHTKESAEACAKWFRKAVRGLKKLTSLILLFNCTSDRDPPLLLPLLKPDAVIGTRFSSVVFMPNITSSSPVGSADSI 419 (496)
T ss_pred ecCCCCHHHHHHHHHHHHHHhccCCCccceEEEEEecCCcchHhHhHHhccccccccccceEEecccccccCCccchhhh
Confidence 9999999999994 32221 11 1 1 3444332 1111 12333 3322110 01 00
Q ss_pred ------------HHHHHHHHhhcCC-----CCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhhHHHHHHHhcCCc
Q psy1839 238 ------------FHKIATVASALSQ-----RSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVLSNYD 298 (304)
Q Consensus 238 ------------~~ii~~~~~g~~~-----~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~lv~~~~~~l~~~~ 298 (304)
...+...|..+.. .....++.....|++....... ..+.+.|+||||+||+++.+|...|
T Consensus 420 ~~~~s~~~~l~~q~~L~~~w~~l~~~~~~~~~~~~V~~sL~~a~~~Lr~~~~-~s~~~~V~gslhlvg~vl~~l~~~~ 496 (496)
T KOG2525|consen 420 SLNTSTEEQLNWQNDLQSVWEELKESEGKTEDPSIVFGSLYLAYELLRDDQH-LSPRIEVLGSLHLVGGVLVLLDRGD 496 (496)
T ss_pred hccCCchHHHHHhHHHHHHHHHHhhcCCCceeeeeEeccHHHHHHHHHhcCC-CCCeEEEEEEEEEechHhhhhhccC
Confidence 1245666665533 2235578999999999988763 5568888899999999999998654
No 7
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.6e-32 Score=269.41 Aligned_cols=226 Identities=15% Similarity=0.117 Sum_probs=180.4
Q ss_pred CCCCChhHHHHHHHHHHHHhCCCCEEEEeecC----CCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccc
Q psy1839 48 EDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGI----GGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM 123 (304)
Q Consensus 48 ~~~~s~fE~~t~~A~~~f~~~~vd~aVlE~Gl----gGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~ 123 (304)
..+|+.++++..+ ..+.+.++++++||+++ ++|.+.+.+ ++++|||+++||+|||| |+|+|+.+|+.+|
T Consensus 140 ~tTP~~~~l~~~~--~~~~d~~~e~~vmEvssh~l~~~Rv~~~~f----~v~~ftnls~DHlD~h~-t~e~Y~~aK~~lf 212 (475)
T COG0769 140 LTTPEALDLQNLL--RDLLDRGAEIAVMEVSSHGLVQGRVEGVTF----DVGVFTNLSRDHLDYHG-TMEYYGAAKAVLF 212 (475)
T ss_pred CCCccHHHHHHHH--HHHHHcCCcEEEEEeehhHHHhCCccCceE----EEEeccccCchhhcccC-cHHHHHHHHHHHH
Confidence 4578888888775 88899999999999986 689988887 78899999999999999 9999999999999
Q ss_pred c---CCceEEecCCCCCchHHHHHHHHHhhCCeEEEeCCCcc--------cc-------------cC---------C---
Q psy1839 124 K---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILN--------YR-------------WR---------G--- 167 (304)
Q Consensus 124 ~---~~~~~V~~~~dd~~~~~~l~~~a~~~~~~~~~~~~~~~--------~~-------------~~---------~--- 167 (304)
. +++.+|+|+ ||+........ ........++++...+ +. |. +
T Consensus 213 ~~~~~~~~~Vin~-dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~L~G~fN 290 (475)
T COG0769 213 ESLPHSGEAVINP-DDGHGLDYKER-LKNALGDYITYGCDFKRPDLDYRGIEESSSGSDFVFEPSGGIGEYELPLPGLFN 290 (475)
T ss_pred hhcCCCccEEEcc-CCchHHHHHHH-HHhcCCCEEEeCCCCchhhhhhccceeeeccceeEEEccCCceeEeccccchhH
Confidence 5 457899999 88877443322 2223335666655421 00 10 0
Q ss_pred ---------------Cc---------ccccccCceeeee-CCceeccCCCCCCCcccc-cccCCCC---------C-CCC
Q psy1839 168 ---------------QP---------LDEDWKNRFGVKL-DSRTAAPNGGHEPGRPNV-GQGGGGF---------Q-SRS 211 (304)
Q Consensus 168 ---------------~~---------l~~~~~GR~e~~~-~~~~v~vD~AHnp~al~~-l~~l~~~---------~-~~~ 211 (304)
.+ ...+++||||.+. +++.++||||||||++++ |.+++.+ + +++
T Consensus 291 v~NaLaA~a~~~~lG~~~e~i~~~l~~~~~v~GRmE~v~~~~~~v~VDyAHnPd~le~~L~~~~~~~~g~li~VfG~gGD 370 (475)
T COG0769 291 VYNALAAVAAALALGVDLEDILAGLETLKPVPGRMELVNIGGKLVIVDYAHNPDGLEKALRAVRLHAAGRLIVVFGCGGD 370 (475)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCcceEecCCCCeEEEEeccChHHHHHHHHHHHhhcCCcEEEEECccCC
Confidence 00 0147999999984 579999999999999999 9999743 2 347
Q ss_pred CCchhHHhc----CC-CCeEEEecCCCCcch---HHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecc
Q psy1839 212 GDNSIRSNA----NP-LSSVDCHNVNDQSNS---FHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGS 283 (304)
Q Consensus 212 ~d~~~r~~~----~~-~d~vi~T~~~dnpr~---~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGS 283 (304)
||+++|+.| .+ +|.+|+|+ ||||. ..|++++..|+....++.++.||++||++|+.+++ ++|+|+++||
T Consensus 371 rD~~kr~~mg~ia~~~ad~vivt~--dnpR~edp~~i~~~i~~g~~~~~~~~~~~dr~~AI~~ai~~a~-~~D~vliagk 447 (475)
T COG0769 371 RDKSKRPDMGAIAEQLADIVIVTS--DNPRSEDPAVILADILAGIEAPEKYEIIEDREEAIRKALDLAK-EGDVVLIAGK 447 (475)
T ss_pred CCcccccchHHHHHhcCCcEEEcC--CCCCCcCHHHHHHHHHhccCCccceecchhHHHHHHHHHHhhc-cCCEEEEeec
Confidence 899999544 44 89999997 99999 56999999999888778889999999999999996 9999999999
Q ss_pred hh
Q psy1839 284 LH 285 (304)
Q Consensus 284 l~ 285 (304)
=|
T Consensus 448 Gh 449 (475)
T COG0769 448 GH 449 (475)
T ss_pred cc
Confidence 54
No 8
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=99.96 E-value=1.1e-28 Score=262.79 Aligned_cols=223 Identities=20% Similarity=0.202 Sum_probs=160.9
Q ss_pred CChhHHHHHHHHHHHHhCCCCEEEEeecC----CCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhcccc--
Q psy1839 51 PAYFKFLTVMSFYVFVKEKPDAVIMEVGI----GGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK-- 124 (304)
Q Consensus 51 ~s~fE~~t~~A~~~f~~~~vd~aVlE~Gl----gGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~-- 124 (304)
|+.+|+.++ |..|.+.++|++|||+|. +||++.++ |+++|||||+.||++||| |+|+|+++|++||+
T Consensus 163 ~~~~~~~~~--l~~~~~~~~~~~VlE~ss~~l~~~rl~~~~----p~iaviTnI~~dHl~~~g-t~e~i~~~K~~i~~~~ 235 (958)
T PRK11929 163 PDAIILHRI--LARMRAAGADAVAMEASSHGLEQGRLDGLR----IAVAGFTNLTRDHLDYHG-TMQDYEEAKAALFSKL 235 (958)
T ss_pred CCHHHHHHH--HHHHHHCCCCEEEEEeccchHhhCcccccc----cCEEEEeCCCccccccCC-CHHHHHHHHHHHhcCC
Confidence 444444444 467889999999999973 67888865 699999999999999999 99999999999997
Q ss_pred -CCceEEecCCCCCchHHHHHHHHHhhCCeEEEeC--CCcc--------------c-----------ccC--CC------
Q psy1839 125 -PNCIAVTSANQRGPCKQILLETSRALNCVLLEAP--SILN--------------Y-----------RWR--GQ------ 168 (304)
Q Consensus 125 -~~~~~V~~~~dd~~~~~~l~~~a~~~~~~~~~~~--~~~~--------------~-----------~~~--~~------ 168 (304)
+++++|+|. ||+.+..++...+.. ..+..++ ...+ + .++ +.
T Consensus 236 ~~~~~~Vln~-dd~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~Na 312 (958)
T PRK11929 236 PGLGAAVINA-DDPAAARLLAALPRG--LKVGYSPQNAGADVQARDLRATAHGQVFTLATPDGSYQLVTRLLGRFNVSNL 312 (958)
T ss_pred ccCCeEEEEC-CCHHHHHHHHHcCCC--ceEEEEeeCCCccEEEEEEEEcCCceEEEEEeCCceEEEEecCccHhhHHHH
Confidence 678899999 888876665442211 1111111 0000 0 000 00
Q ss_pred -------------------cc--cccccCceeeee-----CCceeccCCCCCCCcccc-cccCCCC---C-CC-------
Q psy1839 169 -------------------PL--DEDWKNRFGVKL-----DSRTAAPNGGHEPGRPNV-GQGGGGF---Q-SR------- 210 (304)
Q Consensus 169 -------------------~l--~~~~~GR~e~~~-----~~~~v~vD~AHnp~al~~-l~~l~~~---~-~~------- 210 (304)
.+ ..++|||||++. +++.+++||||||++|++ |++++.+ . +|
T Consensus 313 laAia~a~~lgi~~~~I~~~L~~~~~~~gR~e~i~~~~~~~~~~vi~DyahnP~s~~a~l~~l~~~~~~~~~r~i~V~g~ 392 (958)
T PRK11929 313 LLVAAALKKLGLPLAQIARALAAVSPVPGRMERVGPTAGAQGPLVVVDYAHTPDALAKALTALRPVAQARNGRLVCVFGC 392 (958)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhcCCCCCCCcEEeccccCCCCCEEEEECCCCHHHHHHHHHHHHHhcccCCCcEEEEECC
Confidence 01 146999999983 467899999999999999 9998632 1 22
Q ss_pred --CCCchhHHhc----CC-CCeEEEecCCCCcch--HH-HHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEE
Q psy1839 211 --SGDNSIRSNA----NP-LSSVDCHNVNDQSNS--FH-KIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILV 280 (304)
Q Consensus 211 --~~d~~~r~~~----~~-~d~vi~T~~~dnpr~--~~-ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~Vlv 280 (304)
.+|+++|+.+ .. +|.|++|. |+||. ++ +.+++..++....++..++|+++||++|++.++ ++|+|||
T Consensus 393 g~~r~~~~~~~~~~~~~~~~d~vi~t~--~~pr~e~p~~i~~~i~~~~~~~~~~~~~~d~~~Ai~~a~~~a~-~gD~VLv 469 (958)
T PRK11929 393 GGDRDKGKRPEMGRIAAELADRVVVTS--DNPRSEAPEAIIDQILAGIPAGARVFVISDRAEAIRQAIWMAA-PGDVILI 469 (958)
T ss_pred CCCCCcchhHHHHHHHHHhCCEEEEcC--CCCCCCCHHHHHHHHHhhccCCCceEEECCHHHHHHHHHHhcC-CCCEEEE
Confidence 4566666433 34 79999996 89988 54 445555555433357778999999999999996 9999999
Q ss_pred ecchhh
Q psy1839 281 TGSLHL 286 (304)
Q Consensus 281 aGSl~l 286 (304)
+||=|=
T Consensus 470 ~GsG~e 475 (958)
T PRK11929 470 AGKGHE 475 (958)
T ss_pred eecCcc
Confidence 999664
No 9
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=99.96 E-value=3.3e-28 Score=240.16 Aligned_cols=220 Identities=18% Similarity=0.110 Sum_probs=156.3
Q ss_pred CChhHHHHHHHHHHHHhCCCCEEEEeecC----CCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCC
Q psy1839 51 PAYFKFLTVMSFYVFVKEKPDAVIMEVGI----GGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPN 126 (304)
Q Consensus 51 ~s~fE~~t~~A~~~f~~~~vd~aVlE~Gl----gGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~ 126 (304)
.|+|++.++.+|.+|.+.++|++|||+|+ +++++.++ |+++|||||+.||+++|| |+|+|+.+|++|++..
T Consensus 144 ~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~~~~~~~l~~~~----p~iaViTnI~~dHl~~~g-t~e~i~~~K~~i~~~~ 218 (460)
T PRK00139 144 TTPDALDLQRLLAELVDAGVTYAAMEVSSHALDQGRVDGLK----FDVAVFTNLSRDHLDYHG-TMEDYLAAKARLFSEL 218 (460)
T ss_pred CCcCHHHHHHHHHHHHHCCCCEEEEEcchhhHhhchhcCCc----CCEEEEcCCCcccCCcCC-CHHHHHHHHHHHHhcC
Confidence 57788888888999999999999999995 35666654 799999999999999999 9999999999999865
Q ss_pred c-eEEecCCCCCchHHHHHHHHHhh-----CCeEEE----eCCC---c----ccc--cCCC-------------------
Q psy1839 127 C-IAVTSANQRGPCKQILLETSRAL-----NCVLLE----APSI---L----NYR--WRGQ------------------- 168 (304)
Q Consensus 127 ~-~~V~~~~dd~~~~~~l~~~a~~~-----~~~~~~----~~~~---~----~~~--~~~~------------------- 168 (304)
. .+|+|. ||+.+..+... +... +..+.. +... . .+. +.+.
T Consensus 219 ~~~~v~n~-dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~ 296 (460)
T PRK00139 219 GLAAVINA-DDEVGRRLLAL-PDAYAVSMAGADLRATDVEYTDSGQTFTLVTEVESPLIGRFNVSNLLAALAALLALGVP 296 (460)
T ss_pred CCeEEEEc-CcHhHHHHHhh-cEEEEecCCCCcEEEEEEEEecCceEEEEEEEEEecccchhHHHHHHHHHHHHHHcCCC
Confidence 4 799999 88877555431 1000 011100 0000 0 010 0000
Q ss_pred ------cc--cccccCceeeee--CCceeccCCCCCCCcccc-cccCCCCC-CC---------CCCchhHHh----cCC-
Q psy1839 169 ------PL--DEDWKNRFGVKL--DSRTAAPNGGHEPGRPNV-GQGGGGFQ-SR---------SGDNSIRSN----ANP- 222 (304)
Q Consensus 169 ------~l--~~~~~GR~e~~~--~~~~v~vD~AHnp~al~~-l~~l~~~~-~~---------~~d~~~r~~----~~~- 222 (304)
++ ..+++||||++. +++.+++||+|||+|+++ |++++.+. +| +++..+|+. +..
T Consensus 297 ~~~i~~~L~~~~~~~gR~e~~~~~~~~~iI~DyahNP~s~~aal~~l~~~~~~r~i~VlG~g~~k~~~~~~~~~~~~~~~ 376 (460)
T PRK00139 297 LEDALAALAKLQGVPGRMERVDAGQGPLVIVDYAHTPDALEKVLEALRPHAKGRLICVFGCGGDRDKGKRPLMGAIAERL 376 (460)
T ss_pred HHHHHHHHHhCCCCCCCcEEEEcCCCCEEEEECCCCHHHHHHHHHHHHhhcCCcEEEEECCCCCCchhhhHHHHHHHHHc
Confidence 01 146999999974 478899999999999999 99996532 22 344444432 234
Q ss_pred CCeEEEecCCCCcch--HHHHHHHHh-hcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecchh
Q psy1839 223 LSSVDCHNVNDQSNS--FHKIATVAS-ALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLH 285 (304)
Q Consensus 223 ~d~vi~T~~~dnpr~--~~ii~~~~~-g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~ 285 (304)
+|.+++|+ ++||. ++.+.+.+. +. ...++|+++|++.+.+.++ ++|+|||+||-+
T Consensus 377 ~d~vi~~~--~~~~~~~~~~i~~~~~~~~-----~~~~~d~~~Ai~~~~~~~~-~gDvVLv~G~G~ 434 (460)
T PRK00139 377 ADVVIVTS--DNPRSEDPAAIIADILAGI-----YDVIEDRAEAIRYAIAQAK-PGDVVLIAGKGH 434 (460)
T ss_pred CCEEEEEC--CCCCCCCHHHHHHHHHhCC-----CcccCCHHHHHHHHHHhcC-CCCEEEEEEccC
Confidence 79999996 78877 444443332 21 2357899999999999996 999999999865
No 10
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.95 E-value=2.4e-27 Score=249.44 Aligned_cols=218 Identities=13% Similarity=0.112 Sum_probs=160.3
Q ss_pred HHHHHHHhCCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccC-CCHHHHHHHHhccc---cCCceEEecCCC
Q psy1839 60 MSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLG-NTIEEITMQKAGIM---KPNCIAVTSANQ 135 (304)
Q Consensus 60 ~A~~~f~~~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG-~Tle~Ia~~Ka~I~---~~~~~~V~~~~d 135 (304)
.|+.+|.+.++|++|+|+|+||+++.++...+|+++|||||+.||++++| +|+|+|+.+|++|+ ++++++|+|. |
T Consensus 533 sa~~~l~~~~vd~aVlE~~~ggil~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ia~~K~~i~~~i~~~g~~VlNa-D 611 (864)
T TIGR02068 533 SARRILMDPTVDAAVLETARGGILREGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVKRVVVEVVLPDGYAVLNA-D 611 (864)
T ss_pred HHHHHhhCCCCCEEEEEccCCchhhccCCcccccEEEEecCCHHHcCCCCCCCHHHHHHHHHHHHHhhcCCCEEEEEC-C
Confidence 44566889999999999999999999888877999999999999999876 79999999999996 5788999999 8
Q ss_pred CCchHHHHHHHHHhhCCeEEEeCCCc--------------------------------------cccc--CC--C-----
Q psy1839 136 RGPCKQILLETSRALNCVLLEAPSIL--------------------------------------NYRW--RG--Q----- 168 (304)
Q Consensus 136 d~~~~~~l~~~a~~~~~~~~~~~~~~--------------------------------------~~~~--~~--~----- 168 (304)
||.+.++.. ...+++++|+.+. ++++ .+ .
T Consensus 612 d~~~~~~a~----~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~lpl~~~G~g~~nv~N 687 (864)
T TIGR02068 612 DPMVAAMAE----KCKGKIAYFSMDPNNPTVAAHIADGGRAVYYENGYIVIARGGDEVAIARIAAIPLTMGGRVAFQIEN 687 (864)
T ss_pred CHHHHHHHH----hCCCCEEEEecCCCChHHHHHHHcCCcEEEEcCCEEEEEecCccccccceeeeccccCCcccchHHH
Confidence 887754432 2233444443110 0000 00 0
Q ss_pred --------------------cc------cccccCceeeee-CCceeccCCCCCCCcccc-cccCCCCC-CC-------CC
Q psy1839 169 --------------------PL------DEDWKNRFGVKL-DSRTAAPNGGHEPGRPNV-GQGGGGFQ-SR-------SG 212 (304)
Q Consensus 169 --------------------~l------~~~~~GR~e~~~-~~~~v~vD~AHnp~al~~-l~~l~~~~-~~-------~~ 212 (304)
++ ...+|||||++. +++.+++||||||+++++ +++++.+. +| ++
T Consensus 688 alaAiaaa~~lgi~~e~I~~gL~~F~~~~~~~pGR~e~~~~~g~~vI~DyAHNP~a~~all~~l~~~~~~r~i~Vig~~g 767 (864)
T TIGR02068 688 ALAAVAAAWALGVPIELIRAGIRTFDADAAQAPGRFNLFNLGGAHVLVDYGHNPAAIEAVGAAIRNWPARRRIGVIGGPG 767 (864)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhccccccCCCCceEEEEeCCcEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEECCCC
Confidence 01 024999999974 578999999999999999 88887654 32 55
Q ss_pred CchhH------HhcCC-CCeEEEecCCCCcch------HHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEE
Q psy1839 213 DNSIR------SNANP-LSSVDCHNVNDQSNS------FHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHIL 279 (304)
Q Consensus 213 d~~~r------~~~~~-~d~vi~T~~~dnpr~------~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~Vl 279 (304)
||+.. +.+.+ +|.||+|. .+++|. ++.+.+.+.......++.+++|+++|+++|++.++ ++|+||
T Consensus 768 dr~~~~~~~lg~~l~~~~d~vil~~-~~~~rg~~~ge~~~~i~~~~~~~~~~~~v~~~~d~~eAi~~a~~~a~-~gDlVL 845 (864)
T TIGR02068 768 DRRDEDLVEQGELLGGAFDQIILKE-DDDVRGRPRGEAAALLRQGLRQSARKAAIEDILDETEAIAAALDDLR-AGDLVV 845 (864)
T ss_pred CCChhHHHHHHHHHHHhCCEEEEEe-CCCcCCCCCchHHHHHHHHHHhcCCCCcEEEEcCHHHHHHHHHHhCC-CCCEEE
Confidence 65443 34455 89999998 233344 34444443332233457789999999999999996 999999
Q ss_pred Eecch
Q psy1839 280 VTGSL 284 (304)
Q Consensus 280 vaGSl 284 (304)
|++--
T Consensus 846 i~~~~ 850 (864)
T TIGR02068 846 IFPES 850 (864)
T ss_pred EEecc
Confidence 99865
No 11
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=99.93 E-value=1.8e-25 Score=221.93 Aligned_cols=206 Identities=17% Similarity=0.085 Sum_probs=143.1
Q ss_pred HHhCCCCEEEEeecC----CCccccccccCCCcEEEEcccchhhhhc--cCCCHHHHHHHHhccccCCceEEecCCCCCc
Q psy1839 65 FVKEKPDAVIMEVGI----GGRYDNTNIIPNTAVVGITSLGYDHTAV--LGNTIEEITMQKAGIMKPNCIAVTSANQRGP 138 (304)
Q Consensus 65 f~~~~vd~aVlE~Gl----gGr~d~tn~~~~~~vaviTnIg~DHl~~--lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~ 138 (304)
+.+.+++++|||+|+ ++|++.++ |+++|||||+.||+++ || |+|+|+.+|++||++++++|+|. |++.
T Consensus 173 ~~e~g~~~~v~EvsS~~~~~~r~~~~~----pdiaViTNI~~DHld~L~~~-t~e~~a~aK~~i~~~~~~~Vln~-d~d~ 246 (481)
T PRK14022 173 AVDNGMTHLIMEVSSQAYLVGRVYGLT----FDVGVFLNITPDHIGPIEHP-TFEDYFYHKRLLMENSKAVVVNS-DMDH 246 (481)
T ss_pred HHHCCCCEEEEEechhHHHhccccCcc----ccEEEEcCCCcccCCCCCCC-CHHHHHHHHHHHhcCCCEEEEEc-CCCH
Confidence 568999999999984 56776654 8999999999999999 55 99999999999999889999999 7333
Q ss_pred hHHHHHHHHHhhCCeEEEeCCCc--c--------c----------c--cCCC-------------------------cc-
Q psy1839 139 CKQILLETSRALNCVLLEAPSIL--N--------Y----------R--WRGQ-------------------------PL- 170 (304)
Q Consensus 139 ~~~~l~~~a~~~~~~~~~~~~~~--~--------~----------~--~~~~-------------------------~l- 170 (304)
...++... . ..++++|+... + + . +.+. ++
T Consensus 247 ~~~~~~~~-~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~i~~~L~ 323 (481)
T PRK14022 247 FSELLEQV-T--PQEHDFYGIDSENQIMASNAFSFEATGKLAGTYDIQLIGKFNQENAMAAGLACLRLGASLEDIQKGIA 323 (481)
T ss_pred HHHHHHHh-c--CCCEEEEecCCccceEEEEEEEEEEcccCCceEEEEEechhhHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 33232221 1 12333333210 0 0 0 0000 01
Q ss_pred cccccCceeeee--CCceeccCCCCCCCcccc-cccCCCCC-CC-------CC--CchhH----HhcCC-CCe-EEEecC
Q psy1839 171 DEDWKNRFGVKL--DSRTAAPNGGHEPGRPNV-GQGGGGFQ-SR-------SG--DNSIR----SNANP-LSS-VDCHNV 231 (304)
Q Consensus 171 ~~~~~GR~e~~~--~~~~v~vD~AHnp~al~~-l~~l~~~~-~~-------~~--d~~~r----~~~~~-~d~-vi~T~~ 231 (304)
..+||||||++. ++..+++||||||+|+++ |++++.+. +| ++ +.+++ +.+.. .+. +|+|+
T Consensus 324 ~~~~~gR~e~i~~~~g~~vi~DyahNP~s~~aal~~l~~~~~~r~i~V~G~~~e~g~~~~~~~~~~~~~~~~~~vi~~~- 402 (481)
T PRK14022 324 QTPVPGRMEVLTQSNGAKVFIDYAHNGDSLNKLIDVVEEHQKGKLILLLGAAGNKGESRRPDFGRVANRHPYLQVILTA- 402 (481)
T ss_pred cCCCCCCeEEEECCCCCEEEEECCCCHHHHHHHHHHHhhhCCCCEEEEECCCCCCCcchhHHHHHHHHhcCCceEEEcc-
Confidence 157999999984 357899999999999999 99997653 33 33 44444 23333 343 88886
Q ss_pred CCCcch--HHHHHHHH-hhcCCCCcEEEeCCHHHHHHHHhhcCCC-CCcEEEEecch
Q psy1839 232 NDQSNS--FHKIATVA-SALSQRSKVVEFSSVLDTYNFKYGLDPS-KEYHILVTGSL 284 (304)
Q Consensus 232 ~dnpr~--~~ii~~~~-~g~~~~~~~~~~~dr~~AI~~a~~~a~~-~~d~VlvaGSl 284 (304)
++||. ++.+.+.+ .+.. ..+..++|+++|+++|++.+ . ++|+|||+|+=
T Consensus 403 -~~~r~e~~~~i~~~i~~~~~--~~~~~~~d~~~Ai~~a~~~a-~~~gD~VLi~G~G 455 (481)
T PRK14022 403 -DDPNNEDPKMITQEIASHIT--HPVEIIDDRAEAIKHAMSIT-EGPGDAVIIAGKG 455 (481)
T ss_pred -CCCCCCCHHHHHHHHHhcCC--CCeEEECCHHHHHHHHHHhc-CCCCCEEEEEecC
Confidence 88887 55454433 3322 24567899999999999988 6 88999998764
No 12
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=99.92 E-value=7.4e-25 Score=213.74 Aligned_cols=206 Identities=20% Similarity=0.183 Sum_probs=145.2
Q ss_pred HHhCCCCEEEEeecCCCcccc---ccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccC---CceEEecCCCCCc
Q psy1839 65 FVKEKPDAVIMEVGIGGRYDN---TNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIAVTSANQRGP 138 (304)
Q Consensus 65 f~~~~vd~aVlE~GlgGr~d~---tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~---~~~~V~~~~dd~~ 138 (304)
+.+.+++++|||+|++++++. ++.+ +|+++|||||+.||+++|| |+|+|+++|++||+. ++.+|+|. ||+.
T Consensus 121 ~~~~~~~~~VlE~g~s~~g~~~~~~~~~-~p~vaviTNi~~dHld~~g-s~e~~~~aK~~l~~~~~~~~~~vln~-Dd~~ 197 (417)
T TIGR01143 121 RAPGDHDYAVLEMGASHPGEIAYLAEIA-KPDIAVITNIGPAHLEGFG-SLEGIAEAKGEILQGLKENGIAVINA-DDPA 197 (417)
T ss_pred cCCCCCeEEEEEeCCCCCCcHHHHhCcc-CCCEEEEcCCcHHHhhhcC-CHHHHHHHHHHHHcccCCCCEEEEeC-CcHH
Confidence 567899999999998777664 5666 4999999999999999999 999999999999963 67899999 8887
Q ss_pred hHHHHHHHHHhhCCeEEEeCCCc----------------ccc-----------cC--CC---------------------
Q psy1839 139 CKQILLETSRALNCVLLEAPSIL----------------NYR-----------WR--GQ--------------------- 168 (304)
Q Consensus 139 ~~~~l~~~a~~~~~~~~~~~~~~----------------~~~-----------~~--~~--------------------- 168 (304)
...+... +. ++++++|+... .+. ++ +.
T Consensus 198 ~~~~~~~-~~--~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~N~laAia~~~~lGi~~~ 274 (417)
T TIGR01143 198 FAKFAKR-LP--NKAILSFGFEGGDFSAADISYSALGSTGFTLVAPGGEFEVSLPLLGRHNVMNALAAAALALELGIPLE 274 (417)
T ss_pred HHHHHHh-cc--CCcEEEECCCCCcEEEEEEEEcCCCCEEEEEEeCCceEEEEccCCcHHHHHHHHHHHHHHHHcCCCHH
Confidence 6544332 11 12333333110 010 00 00
Q ss_pred ----cc--cccccCceeeee-CCceeccC-CCCCCCcccc-cccCCCCCCC----------CCCchh--H----HhcCC-
Q psy1839 169 ----PL--DEDWKNRFGVKL-DSRTAAPN-GGHEPGRPNV-GQGGGGFQSR----------SGDNSI--R----SNANP- 222 (304)
Q Consensus 169 ----~l--~~~~~GR~e~~~-~~~~v~vD-~AHnp~al~~-l~~l~~~~~~----------~~d~~~--r----~~~~~- 222 (304)
.+ ..++|||||+.. ++..++.| |+|||+|+++ |++++.+.++ +|+++. + +.+.+
T Consensus 275 ~i~~~l~~~~~~~gR~e~~~~~~~~vidDsya~np~s~~~al~~l~~~~~r~i~VlG~~~e~G~~~~~~~~~l~~~~~~~ 354 (417)
T TIGR01143 275 EIAEGLAELKLVKGRFEIQTKNGLTLIDDTYNANPDSMRAALDALARFPGKKILVLGDMAELGEYSEELHAEVGRYANSL 354 (417)
T ss_pred HHHHHHHhCCCCCCceeEEcCCCcEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEEcCchhcChHHHHHHHHHHHHHHHc
Confidence 01 146999999543 45778888 9999999999 9999754322 355555 3 23333
Q ss_pred -CCeEEEecCCCCcchHHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhhH
Q psy1839 223 -LSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLV 287 (304)
Q Consensus 223 -~d~vi~T~~~dnpr~~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~lv 287 (304)
.|.||+|+ +++ +.+.+. +. ..+..+.+.+++++++.+.++ ++|+||++||++|-
T Consensus 355 ~~d~vi~~g--~~~---~~~~~~---~~--~~~~~~~~~~~~~~~l~~~~~-~~d~VLlkGSr~~~ 409 (417)
T TIGR01143 355 GIDLVFLVG--EEA---AVIYDS---LG--CKGFHFADKDELLAFLKLELG-EGDVVLVKGSRSVK 409 (417)
T ss_pred CCCEEEEEC--HHH---HHHHHh---cc--cCcEEECCHHHHHHHHHHhcC-CCCEEEEEeCCcCc
Confidence 49999998 554 233332 21 124557899999999988885 89999999999874
No 13
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=99.92 E-value=3e-24 Score=212.03 Aligned_cols=226 Identities=17% Similarity=0.131 Sum_probs=156.3
Q ss_pred CCChhHHHHHHH-HHHHHhCCCCEEEEeecC-C---CccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhcccc
Q psy1839 50 MPAYFKFLTVMS-FYVFVKEKPDAVIMEVGI-G---GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK 124 (304)
Q Consensus 50 ~~s~fE~~t~~A-~~~f~~~~vd~aVlE~Gl-g---Gr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~ 124 (304)
.+|.||++|+.+ +..|.+.++|++|+|+|. + ++++.+ +|+++|||||+.||+++|| |+|+|+++|++||+
T Consensus 135 ~~tt~~~~~~~~~l~~~~~~~~~~~VlE~g~~~~~~~~l~~~----~p~iaviTnI~~dHl~~~g-s~e~i~~~K~~i~~ 209 (464)
T TIGR01085 135 ALTTPEALTLQSTLAEMVEAGAQYAVMEVSSHALAQGRVRGV----RFDAAVFTNLSRDHLDFHG-TMENYFAAKASLFT 209 (464)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCCEEEEEecHHHHhhCCccCc----eeCEEEEccCCCCCCcccC-CHHHHHHHHHHHhc
Confidence 378899988654 567778899999999995 2 344332 4899999999999999999 99999999999997
Q ss_pred C---CceEEecCCCCCchHHHHHHHHHhhC------------CeEEE----eCCC---cc---------cccC--C----
Q psy1839 125 P---NCIAVTSANQRGPCKQILLETSRALN------------CVLLE----APSI---LN---------YRWR--G---- 167 (304)
Q Consensus 125 ~---~~~~V~~~~dd~~~~~~l~~~a~~~~------------~~~~~----~~~~---~~---------~~~~--~---- 167 (304)
. ++.+|+|. ||+....+......... ..+.. +... .. +.+. +
T Consensus 210 ~~~~~g~~v~n~-dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~ 288 (464)
T TIGR01085 210 ELGLKRFAVINL-DDEYGAQFVKRLPKDITVSAITQPADGRAQDIKITDSGYSFEGQQFTFETPAGEGHLHTPLIGRFNV 288 (464)
T ss_pred cccCCCeEEEEc-CCHHHHHHHHhcCCCeEEEEecCCCccccccEEEEEEEEecCceEEEEEeCCceEEEEecCccHhHH
Confidence 3 46799999 88877554432111000 00000 0000 00 0000 0
Q ss_pred ------------Cc-c-----------cccccCceeeee--CCceeccCCCCCCCcccc-cccCCCCC-CC---------
Q psy1839 168 ------------QP-L-----------DEDWKNRFGVKL--DSRTAAPNGGHEPGRPNV-GQGGGGFQ-SR--------- 210 (304)
Q Consensus 168 ------------~~-l-----------~~~~~GR~e~~~--~~~~v~vD~AHnp~al~~-l~~l~~~~-~~--------- 210 (304)
.+ + ..+++||||++. ++..++.||+|||+||++ |++++.+. +|
T Consensus 289 ~NalaAia~a~~lg~i~~e~i~~~L~~~~~~~gR~e~~~~~~g~~vi~Dy~~NP~s~~aal~~l~~~~~~r~i~VlGlg~ 368 (464)
T TIGR01085 289 YNLLAALATLLHLGGIDLEDIVAALEKFRGVPGRMELVDGGQKFLVIVDYAHTPDALEKALRTLRKHKDGRLIVVFGCGG 368 (464)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCcEEEEcCCCCEEEEECCCCHHHHHHHHHHHHhhCCCcEEEEECCCC
Confidence 01 1 146999999974 367899999999999999 99997553 33
Q ss_pred CCCchhHHh----cCC-CCeEEEecCCCCcch--HH-HHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEec
Q psy1839 211 SGDNSIRSN----ANP-LSSVDCHNVNDQSNS--FH-KIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTG 282 (304)
Q Consensus 211 ~~d~~~r~~----~~~-~d~vi~T~~~dnpr~--~~-ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaG 282 (304)
.+++..++. +.. .|.+|+|+ +++|. ++ +.+++..++.....+.+++|+++|+++++..++ ++|+|||+|
T Consensus 369 ~~~~~~~~~~~~~~~~~~d~vi~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~d~VLv~G 445 (464)
T TIGR01085 369 DRDRGKRPLMGAIAEQLADLVILTS--DNPRGEDPEQIIADILAGISEKEKVVIIADRRQAIRYAISNAK-AGDVVLIAG 445 (464)
T ss_pred CCCcchhHHHHHHHHhcCCEEEEeC--CCcCCCCHHHHHHHHHhcccCCCcEEEECCHHHHHHHHHHhcC-CCCEEEEEE
Confidence 344444432 233 79999997 67766 44 445555555433346668999999999999996 999999999
Q ss_pred ch
Q psy1839 283 SL 284 (304)
Q Consensus 283 Sl 284 (304)
+=
T Consensus 446 ~g 447 (464)
T TIGR01085 446 KG 447 (464)
T ss_pred cC
Confidence 74
No 14
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=99.90 E-value=3.1e-23 Score=205.86 Aligned_cols=214 Identities=16% Similarity=0.109 Sum_probs=145.4
Q ss_pred CCCCEEEEeecCCCcccc---ccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhcccc---CCceEEecCCCCCchHH
Q psy1839 68 EKPDAVIMEVGIGGRYDN---TNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCKQ 141 (304)
Q Consensus 68 ~~vd~aVlE~GlgGr~d~---tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~---~~~~~V~~~~dd~~~~~ 141 (304)
.+++++|||+|+++.++. +..+ +|+++|||||+.||+++|| |+|+|+.+|.+||+ +++.+|+|. |||....
T Consensus 158 ~~~~~~V~E~g~s~~~e~~~~~~~~-~PdiaViTNI~~DHLd~~g-t~e~~~~aK~~l~~~~~~~g~~VlN~-Dd~~~~~ 234 (479)
T PRK14093 158 ADARFAVFEIGMNHAGEIEPLVKMV-RPHVAIITTVEPVHLEFFS-GIEAIADAKAEIFTGLEPGGAAVLNR-DNPQFDR 234 (479)
T ss_pred CCCcEEEEEeCCCCCchHHHHhccc-CCCEEEEcCCCHHHHhhcC-CHHHHHHHHHHHHccCCCCCEEEEeC-CcHHHHH
Confidence 579999999998766553 4444 5999999999999999999 89999999999994 567899999 8887766
Q ss_pred HHHHHHHhhCC-eEEEeCCCc--cc-------------------------ccC--CC----------------c------
Q psy1839 142 ILLETSRALNC-VLLEAPSIL--NY-------------------------RWR--GQ----------------P------ 169 (304)
Q Consensus 142 ~l~~~a~~~~~-~~~~~~~~~--~~-------------------------~~~--~~----------------~------ 169 (304)
+... +...+. ++++|+... ++ .++ +. +
T Consensus 235 l~~~-~~~~~~~~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi~~~~i 313 (479)
T PRK14093 235 LAAS-ARAAGIARIVSFGADEKADARLLDVALHADCSAVHADILGHDVTYKLGMPGRHIAMNSLAVLAAAELAGADLALA 313 (479)
T ss_pred HHHH-hhhccCCcEEEEeCCCCccEEEEEEEEcCCceEEEEEECCceEEEEecCCCHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 5432 221121 344454210 10 000 00 0
Q ss_pred ---c--cccccCceeeee----CCceeccC--CCCCCCcccc-cccCCCC----CCC----------CCCchhH------
Q psy1839 170 ---L--DEDWKNRFGVKL----DSRTAAPN--GGHEPGRPNV-GQGGGGF----QSR----------SGDNSIR------ 217 (304)
Q Consensus 170 ---l--~~~~~GR~e~~~----~~~~v~vD--~AHnp~al~~-l~~l~~~----~~~----------~~d~~~r------ 217 (304)
+ ..+++|||+... ++..++|| |+|||++|++ |++++.+ ++| +++++.+
T Consensus 314 ~~~l~~~~~~~gR~~~~r~~~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~G~m~elg~~~~~~h~~~~ 393 (479)
T PRK14093 314 ALALSQVQPAAGRGVRHTLEVGGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAVLGDMLELGPRGPELHRGLA 393 (479)
T ss_pred HHHHHhCCCcCCcceEEEeecCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEEECChHHcCcHHHHHHHHHH
Confidence 0 147899999852 34467887 9999999999 9999764 233 3555553
Q ss_pred HhcC-C-CCeEEEecCCCCcchHHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhhH-HHHHHHh
Q psy1839 218 SNAN-P-LSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLV-GAFLNVL 294 (304)
Q Consensus 218 ~~~~-~-~d~vi~T~~~dnpr~~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~lv-~~~~~~l 294 (304)
+.+. . +|.|++++ + ....+.+. +........++|.+++.++....++ ++|+||++||+.+= ..+.+.|
T Consensus 394 ~~~~~~~~d~v~~~G-~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~-~gd~vL~kGSr~~~le~i~~~l 464 (479)
T PRK14093 394 EAIRANAIDLVFCCG-P----LMRNLWDA---LSSGKRGGYAEDAAALESQVVAAIR-AGDVIMVKGSLGSRMKTIVTAL 464 (479)
T ss_pred HHHHHcCCCEEEEEc-h----hHHHHHHh---hcccccceeeCCHHHHHHHHHHhcC-CCCEEEEEcCCcCCHHHHHHHH
Confidence 3333 2 79999997 2 22233332 2111111357899999999888886 99999999999874 4444443
No 15
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.88 E-value=5.1e-22 Score=196.86 Aligned_cols=206 Identities=13% Similarity=0.042 Sum_probs=142.4
Q ss_pred HhCCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCC-ceEEecCCCCCchHHHHH
Q psy1839 66 VKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPN-CIAVTSANQRGPCKQILL 144 (304)
Q Consensus 66 ~~~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~-~~~V~~~~dd~~~~~~l~ 144 (304)
...++|++|+|+|+.+. +..+++ +|+++|||||+.||+++|| |+|+|+.+|++||++. +.+|+|. ||+.+..++.
T Consensus 167 ~~~~~~~~V~E~ss~~l-~~~~~i-~P~iaVITNI~~DHld~lg-t~e~ia~~K~~I~~~~~~~~v~n~-dd~~~~~~~~ 242 (480)
T PRK01438 167 DPEGYDVLAVELSSFQL-HWSPSV-SPHSAAVLNLAPDHLDWHG-SMEAYAAAKARIYEGTTVACVYNV-ADPATEDLVE 242 (480)
T ss_pred cCCCCCEEEEEcChHHh-CcCccc-CCCEEEEecCChhhccccC-CHHHHHHHHHHHHhCCCceEEEeC-CcHHHHHHHh
Confidence 45678999999998754 445666 4999999999999999999 9999999999999875 5789999 8888877766
Q ss_pred HHHHhhCCeEEEeCCC----cc-----------------------------cccCCC-----------------------
Q psy1839 145 ETSRALNCVLLEAPSI----LN-----------------------------YRWRGQ----------------------- 168 (304)
Q Consensus 145 ~~a~~~~~~~~~~~~~----~~-----------------------------~~~~~~----------------------- 168 (304)
+.+...++++++++.. .+ ++..+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~lgi~~~~i 322 (480)
T PRK01438 243 EADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNIANALAAAALARSFGVPPAAV 322 (480)
T ss_pred hhcccCCceEEEEeCCCCCCCCceEECCEEEEEeeccccccccceeeeHHHcCCCCHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 5543334454444310 00 000000
Q ss_pred --cc--cccccCceeeee-CCceeccC--CCCCCCcccc-cccCCC----CCCCCCCchhHH---hcCC-CCeEEEecCC
Q psy1839 169 --PL--DEDWKNRFGVKL-DSRTAAPN--GGHEPGRPNV-GQGGGG----FQSRSGDNSIRS---NANP-LSSVDCHNVN 232 (304)
Q Consensus 169 --~l--~~~~~GR~e~~~-~~~~v~vD--~AHnp~al~~-l~~l~~----~~~~~~d~~~r~---~~~~-~d~vi~T~~~ 232 (304)
++ ...++||||++. .+..++|| |||||+++++ |++++. ++|.++|||... .+.+ .|.+|+|+ .
T Consensus 323 ~~~L~~~~~~~gR~E~i~~~~~~~iiDDs~ahNp~a~~aaL~~l~~i~~I~gG~~~~kd~~~~~~~l~~~~~~vi~~g-~ 401 (480)
T PRK01438 323 RDGLRAFRPDAHRIEHVADADGVTWVDDSKATNPHAAAASLAAYPSVVWIAGGLAKGADFDDLVRRAAGRLRGVVLIG-A 401 (480)
T ss_pred HHHHHhCCCCCCceEEEEEECCEEEEecCccCCHHHHHHHHHhCCCEEEEEecccCCCCHHHHHHHHHhhceEEEEEC-C
Confidence 00 135789999974 33456787 9999999999 998853 224578888873 3344 79999996 2
Q ss_pred CCcchHHHHHHHHhhcCCCCcEEEeC-----CHHHHHHHHhhcCCCCCcEEEEe
Q psy1839 233 DQSNSFHKIATVASALSQRSKVVEFS-----SVLDTYNFKYGLDPSKEYHILVT 281 (304)
Q Consensus 233 dnpr~~~ii~~~~~g~~~~~~~~~~~-----dr~~AI~~a~~~a~~~~d~Vlva 281 (304)
+|. .+++.+........+..++ |.++|++.|.+.++ ++|+||+.
T Consensus 402 --~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~A~~~a~~~~~-~~d~vlls 450 (480)
T PRK01438 402 --DRA--EIAEALARHAPDVPVVEVDRTDTGAMDEAVAAAAKLAR-PGDTVLLA 450 (480)
T ss_pred --CHH--HHHHHHHhcCCCCCEEEecCCCcCCHHHHHHHHHHhCC-CCCEEEec
Confidence 222 3333333221111344455 99999999999885 88888873
No 16
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.87 E-value=1e-21 Score=193.95 Aligned_cols=212 Identities=11% Similarity=0.070 Sum_probs=147.6
Q ss_pred CCCCEEEEeecC-CCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccc---cCCceEEecCCCCCchHHHH
Q psy1839 68 EKPDAVIMEVGI-GGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM---KPNCIAVTSANQRGPCKQIL 143 (304)
Q Consensus 68 ~~vd~aVlE~Gl-gGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~---~~~~~~V~~~~dd~~~~~~l 143 (304)
.+.+++|+|+|. ++... . + +|+++|||||+.||+++|| |+|+|+.+|.+++ ++++.+|+|. ||+.+..+.
T Consensus 154 ~~~~~~V~E~ss~q~~~~--~-~-~p~vaViTNI~~DHld~~g-t~e~y~~ak~k~~~~~~~~~~~V~n~-dd~~~~~~~ 227 (461)
T PRK00421 154 GNSDYFVAEADESDRSFL--K-L-HPDIAIVTNIDADHLDYYG-DFEDLKDAFQEFAHNLPFYGALVACG-DDPELRELL 227 (461)
T ss_pred CCCCEEEEECCCccchHh--h-c-CCCEEEEccCChhhccccC-CHHHHHHHHHHHHhcCCCCCEEEEEC-CCHHHHHHH
Confidence 357999999996 44322 2 2 4899999999999999999 9999999988876 4567899999 888776654
Q ss_pred HHHHHhhCCeEEEeCCCc--c--------------------------cc--cCC------------------C-------
Q psy1839 144 LETSRALNCVLLEAPSIL--N--------------------------YR--WRG------------------Q------- 168 (304)
Q Consensus 144 ~~~a~~~~~~~~~~~~~~--~--------------------------~~--~~~------------------~------- 168 (304)
... .+++++|+... + +. ..+ .
T Consensus 228 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~h~~~N~~aA~a~~~~lgv~~~~i~~ 303 (461)
T PRK00421 228 PRV----SRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGEVLGDFTLPLPGRHNVLNALAAIAVALELGIDDEAIRE 303 (461)
T ss_pred Hhc----CCCEEEecCCCCCcEEEEEEEEcCCceEEEEEECCceEEEEEecCCcHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 332 23344332100 0 00 000 0
Q ss_pred cc--cccccCceeeee--CCceeccCCCCCCCcccc-cccCCCC-C-CC----------CCCchhHH----hcCC-CCeE
Q psy1839 169 PL--DEDWKNRFGVKL--DSRTAAPNGGHEPGRPNV-GQGGGGF-Q-SR----------SGDNSIRS----NANP-LSSV 226 (304)
Q Consensus 169 ~l--~~~~~GR~e~~~--~~~~v~vD~AHnp~al~~-l~~l~~~-~-~~----------~~d~~~r~----~~~~-~d~v 226 (304)
++ ...++||||++. +++.++.||||||+++++ +++++.+ . ++ ++||+.+. .+ + +|.+
T Consensus 304 ~l~~f~~~~~R~e~~~~~~g~~~i~D~aHnp~~~~a~~~al~~~~~~~~i~~v~gp~~~~r~kd~~~~~~~~l-~~~d~v 382 (461)
T PRK00421 304 ALATFKGVKRRFEEKGEVGGVVLIDDYAHHPTEIKATLKAARQGYPDKRIVAVFQPHRYSRTRDLLDEFAEAL-SDADEV 382 (461)
T ss_pred HHHhCCCCCcccEEEEecCCcEEEEeCCCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCccHHHHHHHHHHHH-HHCCEE
Confidence 11 147999999974 357899999999999999 8888653 2 22 56776552 22 4 8999
Q ss_pred EEecCCC----Ccch--HHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhhHHHHHHH
Q psy1839 227 DCHNVND----QSNS--FHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNV 293 (304)
Q Consensus 227 i~T~~~d----npr~--~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~lv~~~~~~ 293 (304)
++|.++. ++|. ++.+.+.+.. ....+..++|+++|++.|.+.++ ++|+|||+|+=++-+....+
T Consensus 383 i~~~~~~~~e~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~~~a~~~a~-~gD~vlv~G~g~~~~~~~~~ 452 (461)
T PRK00421 383 ILLDIYAAGEEPIGGVDSEDLARKIKR--GHRDPIFVPDLEDLAELLAEVLK-PGDLVLTMGAGDITKLARAL 452 (461)
T ss_pred EEcCccCCCCCCCCCCCHHHHHHHHhc--cCCceEEeCCHHHHHHHHHHhcC-CCCEEEEECCCCHHHHHHHH
Confidence 9997221 1343 5666666543 12346678999999999999996 99999999998876544333
No 17
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=99.87 E-value=8.2e-22 Score=194.41 Aligned_cols=210 Identities=15% Similarity=0.126 Sum_probs=142.6
Q ss_pred hCCCCEEEEeecCC--Ccccc-ccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhcccc---CCceEEecCCCCCchH
Q psy1839 67 KEKPDAVIMEVGIG--GRYDN-TNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCK 140 (304)
Q Consensus 67 ~~~vd~aVlE~Glg--Gr~d~-tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~---~~~~~V~~~~dd~~~~ 140 (304)
..+++++|||+|+. |+.+. ++.+ +|+++|||||+.||+++|| |+|+|+.+|++||+ +++.+|+|. ||+...
T Consensus 149 ~~~~~~~V~E~g~~~~gei~~~~~~~-~p~iaViTNI~~dHld~~g-s~e~~~~aK~~l~~~~~~~g~~vln~-Dd~~~~ 225 (453)
T PRK10773 149 TPEHDYAVIELGANHQGEIAYTVSLT-RPEAALVNNLAAAHLEGFG-SLAGVAKAKGEIFSGLPENGIAIMNA-DSNDWL 225 (453)
T ss_pred CCCCcEEEEEcCCCCcchhHHhcCcc-CCCEEEEeCCCHHHHhhcC-CHHHHHHHHHHHHcccCCCCEEEEEC-CcHhHH
Confidence 45799999999984 66554 4555 4999999999999999999 89999999999995 457899999 888765
Q ss_pred HHHHHHHHhhCCeEEEeCCC----cc--------------cc-----------cC--CC----------------c----
Q psy1839 141 QILLETSRALNCVLLEAPSI----LN--------------YR-----------WR--GQ----------------P---- 169 (304)
Q Consensus 141 ~~l~~~a~~~~~~~~~~~~~----~~--------------~~-----------~~--~~----------------~---- 169 (304)
.+... .. ...+++|+.. .+ +. .+ +. +
T Consensus 226 ~~~~~-~~--~~~~~~~g~~~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi~~~ 302 (453)
T PRK10773 226 NWQSV-IG--SKTVWRFSPNAANSVDFTATNIHVTSHGTEFTLHTPTGSVDVLLPLPGRHNIANALAAAALAMSVGATLD 302 (453)
T ss_pred HHHHH-hc--CCcEEEEeCCCCCcCcEEEEEEEEeCCeeEEEEEecCceEEEEecCCcHhHHHHHHHHHHHHHHcCCCHH
Confidence 44322 11 1123334321 01 00 00 00 0
Q ss_pred -----c--cccccCceeeee-CCceeccC--CCCCCCcccc-cccCCCCCCC----------CCCchhH------HhcC-
Q psy1839 170 -----L--DEDWKNRFGVKL-DSRTAAPN--GGHEPGRPNV-GQGGGGFQSR----------SGDNSIR------SNAN- 221 (304)
Q Consensus 170 -----l--~~~~~GR~e~~~-~~~~v~vD--~AHnp~al~~-l~~l~~~~~~----------~~d~~~r------~~~~- 221 (304)
+ ..+++||||.+. .+..++|| |+|||++|++ |++++.+++| +|+++.+ +.+.
T Consensus 303 ~i~~~L~~~~~~~gR~e~v~~~~g~~iIDDsYn~nP~s~~aaL~~l~~~~~r~i~VlG~m~elG~~~~~~h~~~~~~~~~ 382 (453)
T PRK10773 303 AVKAGLANLKAVPGRLFPIQLAEGQLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMAELGAESEACHRQVGEAAKA 382 (453)
T ss_pred HHHHHHHhCCCCCCceeEEECCCCeEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEECChhhcchHHHHHHHHHHHHHHH
Confidence 0 147999999874 23345665 9999999999 9999776432 4556664 2233
Q ss_pred C-CCeEEEecCCCCcchHHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCc--EEEEecchhhH-HHHHHHh
Q psy1839 222 P-LSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEY--HILVTGSLHLV-GAFLNVL 294 (304)
Q Consensus 222 ~-~d~vi~T~~~dnpr~~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d--~VlvaGSl~lv-~~~~~~l 294 (304)
. +|.+|+.+ + ..+.+++. .. .. ..++|++++.+.....++ ++| +|||+||+.+- ..+++.|
T Consensus 383 ~~~d~v~~~G-~----~~~~~~~~---~~-~~--~~~~~~~~~~~~l~~~~~-~gd~~~vL~Kgsr~~~le~i~~~l 447 (453)
T PRK10773 383 AGIDKVLSVG-K----LSHAISEA---SG-VG--EHFADKTALIARLKALLA-EHQVITILVKGSRSAAMEEVVRAL 447 (453)
T ss_pred cCCCEEEEEC-h----hHHHHHHh---cC-CC--eeECCHHHHHHHHHHhhc-CCCceEEEEEeCCcCCHHHHHHHH
Confidence 2 79999997 3 23333332 11 11 347999999999999996 899 59999999986 3344433
No 18
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.86 E-value=3e-21 Score=190.50 Aligned_cols=200 Identities=11% Similarity=0.018 Sum_probs=139.0
Q ss_pred CCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCC--ceEEecCCCCCchHHHHHH
Q psy1839 68 EKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPN--CIAVTSANQRGPCKQILLE 145 (304)
Q Consensus 68 ~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~--~~~V~~~~dd~~~~~~l~~ 145 (304)
.+.+++|+|+|+.. +|.||++. |+++|||||+.||+++|| |+|+|+.+|++|+++. +++|+|. |++.+..+.+.
T Consensus 160 ~~~~~~V~E~~~~~-ld~t~~i~-P~iaVITNI~~DHld~lg-sle~ia~~K~~ii~~~~~~~~V~n~-dd~~~~~~~~~ 235 (460)
T PRK01390 160 PAGRVYVLELSSYQ-IDLAPSLD-PDVGVLLNLTPDHLDRHG-TMEGYAAAKERLFAGQGPDTAVIGV-DDAYCRAIADR 235 (460)
T ss_pred CCCCEEEEEcCccc-cccccccC-CCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCCCCEEEEeC-CCHHHHHHHHh
Confidence 36899999999864 68999885 999999999999999999 7999999999999876 8899999 88877666433
Q ss_pred HHHhhCCeEEEeCCCc--------------cc---------------ccCCC-------------------------cc-
Q psy1839 146 TSRALNCVLLEAPSIL--------------NY---------------RWRGQ-------------------------PL- 170 (304)
Q Consensus 146 ~a~~~~~~~~~~~~~~--------------~~---------------~~~~~-------------------------~l- 170 (304)
+...++++++++... .+ .+.+. ++
T Consensus 236 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAiaa~~~lgi~~~~i~~gL~ 314 (460)
T PRK01390 236 -LEAAGRRVVRISAGKPLADGVYADGGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAAAYAAARALGLSPEEIAAGLA 314 (460)
T ss_pred -ccccCceEEEEeCCCCCcCceEEeCCEEEEecCCCcceeeeHHhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222344555443210 00 00000 11
Q ss_pred -cccccCceeeee--CCceeccC-CCCCCCcccc-cccCCC----CCCCCCCchhH---HhcCCCCeEEEecCCCCcchH
Q psy1839 171 -DEDWKNRFGVKL--DSRTAAPN-GGHEPGRPNV-GQGGGG----FQSRSGDNSIR---SNANPLSSVDCHNVNDQSNSF 238 (304)
Q Consensus 171 -~~~~~GR~e~~~--~~~~v~vD-~AHnp~al~~-l~~l~~----~~~~~~d~~~r---~~~~~~d~vi~T~~~dnpr~~ 238 (304)
...||||||++. ++..++.| |+|||+|+++ |+.++. +++++.+...+ +.+...+.+++++ . .+
T Consensus 315 ~~~~~~gR~e~i~~~~g~~vIdDs~ahNp~s~~~aL~~~~~i~~I~G~~d~~~~~~~L~~~~~~v~~v~~~g-~----~~ 389 (460)
T PRK01390 315 SFPGLAHRMEQVGRRGGVLFVNDSKATNADAAAKALSSFDRIYWIAGGKPKEGGIESLAPFFPRIAKAYLIG-E----AA 389 (460)
T ss_pred hCCCCCCceEEEeeeCCcEEEEcCCCCCHHHHHHHHHhCCCeEEEecCccCCCCHHHHHHHHHhhCEEEEEC-C----CH
Confidence 147999999974 33455559 9999999999 987753 22322222222 2222267788886 2 24
Q ss_pred HHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcC----CCCCcEEEEe
Q psy1839 239 HKIATVASALSQRSKVVEFSSVLDTYNFKYGLD----PSKEYHILVT 281 (304)
Q Consensus 239 ~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a----~~~~d~Vlva 281 (304)
+.|++.+.+. ..+..++|.++|++.|.+.+ + ++|+||..
T Consensus 390 ~~l~~~~~~~---~~~~~~~~l~~Av~~a~~~a~~~~~-~g~~vlls 432 (460)
T PRK01390 390 EAFAATLGGA---VPFEICGTLERAVAAAAADAAADGA-PEPVVLLS 432 (460)
T ss_pred HHHHHHHhcC---CCEEEeCCHHHHHHHHHHhhhccCC-CCCEEEeC
Confidence 4555544432 23567899999999999999 8 89999975
No 19
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.86 E-value=4e-21 Score=188.74 Aligned_cols=203 Identities=12% Similarity=0.064 Sum_probs=140.0
Q ss_pred CCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccC---CceEEecCCCCCchHHHHH
Q psy1839 68 EKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIAVTSANQRGPCKQILL 144 (304)
Q Consensus 68 ~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~---~~~~V~~~~dd~~~~~~l~ 144 (304)
.+.+++|+|+|+.+... ...+ +|+++|||||+.||+++|| |+|+|+.+|++||++ .+.+++|. |++...
T Consensus 155 ~~~~~~v~E~~~~~~~~-~~~~-~P~i~VITnI~~dHl~~~g-t~e~ia~~K~~i~~~~~~~~~~vln~-d~~~~~---- 226 (450)
T PRK14106 155 GEDDIIVAEVSSFQLET-IKEF-KPKVGCILNITPDHLDRHK-TMENYIKAKARIFENQRPSDYTVLNY-DDPRTR---- 226 (450)
T ss_pred CCCCEEEEEcChhhhcc-cccc-CCCEEEEecCCcchhcccC-CHHHHHHHHHHHHhCCCCCCEEEEeC-CcHHHH----
Confidence 47899999999854322 2344 4999999999999999999 999999999999974 45789999 776543
Q ss_pred HHHHhhCCeEEEeCCCcc-------------ccc---------------CCC-------------------------cc-
Q psy1839 145 ETSRALNCVLLEAPSILN-------------YRW---------------RGQ-------------------------PL- 170 (304)
Q Consensus 145 ~~a~~~~~~~~~~~~~~~-------------~~~---------------~~~-------------------------~l- 170 (304)
..+.+.++++++++.... +.. .+. ++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAia~~~~lgi~~~~i~~~L~ 306 (450)
T PRK14106 227 SLAKKAKARVIFFSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAATAAAYLLGISPDVIANTLK 306 (450)
T ss_pred HHHhhcCceEEEEecCccCcCceEEECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 334444556655543210 000 000 01
Q ss_pred -cccccCceeeee--CCceeccC-CCCCCCcccc-cccCCC-----CCCCCCCchhHHhc---CC-CCeEEEecCCCCcc
Q psy1839 171 -DEDWKNRFGVKL--DSRTAAPN-GGHEPGRPNV-GQGGGG-----FQSRSGDNSIRSNA---NP-LSSVDCHNVNDQSN 236 (304)
Q Consensus 171 -~~~~~GR~e~~~--~~~~v~vD-~AHnp~al~~-l~~l~~-----~~~~~~d~~~r~~~---~~-~d~vi~T~~~dnpr 236 (304)
..+||||||.+. ++..+++| |||||+++++ +++++. +++..++++.++.+ .. .|.+++++ .
T Consensus 307 ~~~~~~gR~e~i~~~~~~~vi~D~~ahNP~s~~~~l~~l~~~~i~v~g~~~~~k~~~~~~~~l~~~~~~vi~~g--~--- 381 (450)
T PRK14106 307 TFKGVEHRIEFVAEINGVKFINDSKGTNPDAAIKALEAYETPIVLIAGGYDKGSDFDEFAKAFKEKVKKLILLG--E--- 381 (450)
T ss_pred hCCCCCcceEEEeeECCEEEEeCCCccCHHHHHHHHHhCCCCeEEEeCCcCCCCCHHHHHHHHHhhCCEEEEEc--C---
Confidence 146999999974 34578899 7999999999 998853 11235666665433 34 78999997 2
Q ss_pred hHHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecchh
Q psy1839 237 SFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLH 285 (304)
Q Consensus 237 ~~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~ 285 (304)
.++.+.+.+..... .++.+++|+++|++.+...++ ++|+|||+|.=.
T Consensus 382 ~~~~l~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~-~~d~ilv~~~~~ 428 (450)
T PRK14106 382 TAQEIAEAARKYGF-DNILFAETLEEAVKKAYEIAK-PGDVVLLSPACA 428 (450)
T ss_pred CHHHHHHHHhhCCC-CcEEEeCCHHHHHHHHHHhCC-CCCEEEEChhhh
Confidence 23334333322111 245668999999999998885 899999999633
No 20
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=99.86 E-value=2.5e-21 Score=206.45 Aligned_cols=205 Identities=14% Similarity=0.109 Sum_probs=141.2
Q ss_pred hCCCCEEEEeecCCCcccc--c-cccCCCcEEEEcccchhhhhccCCCHHHHHHHHhcccc---CCceEEecCCCCCchH
Q psy1839 67 KEKPDAVIMEVGIGGRYDN--T-NIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCK 140 (304)
Q Consensus 67 ~~~vd~aVlE~GlgGr~d~--t-n~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~---~~~~~V~~~~dd~~~~ 140 (304)
+.+++++|||+|+++.++. + .++ +|+++|||||+.||+++|| |+|+|+.+|++||+ +++.+|+|. ||+...
T Consensus 655 ~~~~~~~VlE~s~~~~g~~~~~~~~~-~pdiaViTNI~~dHLd~~~-s~e~y~~aK~~i~~~~~~~~~~Vln~-Dd~~~~ 731 (958)
T PRK11929 655 RAQHRAAVFELGMNHPGEIAYLAAIA-APTVALVTNAQREHQEFMH-SVEAVARAKGEIIAALPEDGVAVVNG-DDPYTA 731 (958)
T ss_pred CCCCcEEEEEeCCCCCccHHHHhCcc-CCCEEEEcCCcHHHhhhcC-CHHHHHHHHHHHHccCCCCCEEEEEC-CcHHHH
Confidence 5689999999999755443 3 333 5999999999999999999 89999999999995 567899999 888765
Q ss_pred HHHHHHHHhhCCeEEEeCCCc--c-------------------c-----------ccC--CC------------------
Q psy1839 141 QILLETSRALNCVLLEAPSIL--N-------------------Y-----------RWR--GQ------------------ 168 (304)
Q Consensus 141 ~~l~~~a~~~~~~~~~~~~~~--~-------------------~-----------~~~--~~------------------ 168 (304)
.+... +. ...+++|+... + + .++ +.
T Consensus 732 ~~~~~-~~--~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi 808 (958)
T PRK11929 732 IWAKL-AG--ARRVLRFGLQPGADVYAEKIAKDISVGEAGGTRCQVVTPAGSAEVYLPLIGEHNLRNALAAIACALAAGA 808 (958)
T ss_pred HHHHh-hc--CCcEEEEeCCCCcceEeeecccceeecCCCceEEEEEECCceEEEEeCCCcHHHHHHHHHHHHHHHHcCC
Confidence 44322 11 11223332100 0 0 000 00
Q ss_pred -------cc--cccccCceeeee--CCceeccC-CCCCCCcccc-cccCCCCC-CC----------CCCchhH--H----
Q psy1839 169 -------PL--DEDWKNRFGVKL--DSRTAAPN-GGHEPGRPNV-GQGGGGFQ-SR----------SGDNSIR--S---- 218 (304)
Q Consensus 169 -------~l--~~~~~GR~e~~~--~~~~v~vD-~AHnp~al~~-l~~l~~~~-~~----------~~d~~~r--~---- 218 (304)
.+ ..++|||||.+. ++..++.| |+|||+|+++ |++++.+. ++ +||++++ +
T Consensus 809 ~~~~i~~~L~~f~~~~gR~e~~~~~~~~~iidDsya~np~s~~aaL~~l~~~~~~~~i~VlG~~~e~g~~~~~~h~~~g~ 888 (958)
T PRK11929 809 SLKQIRAGLERFQPVAGRMQRRRLSCGTRIIDDTYNANPDSMRAAIDVLAELPNGPRALVLGDMLELGDNGPAMHREVGK 888 (958)
T ss_pred CHHHHHHHHhhCCCCCCCceEEEcCCCcEEEEcCCCCCHHHHHHHHHHHHhccCCCEEEEECCchhcCcHHHHHHHHHHH
Confidence 01 147999999974 45677788 9999999999 99997543 22 5777776 2
Q ss_pred hcCC--CCeEEEecCCCCcchHHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhhH
Q psy1839 219 NANP--LSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLV 287 (304)
Q Consensus 219 ~~~~--~d~vi~T~~~dnpr~~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~lv 287 (304)
.+.+ .|.|++.+ .+++ .+.+++..+. ...+.|+++|++++...++ ++|+||++||+++=
T Consensus 889 ~~~~~~~~~vi~~G--e~~~--~i~~~~~~~~-----~~~~~~~~~a~~~~~~~~~-~gD~VLlkGSr~~~ 949 (958)
T PRK11929 889 YARQLGIDALITLG--EAAR--DAAAAFGAGA-----RGVCASVDEIIAALRGALP-EGDSVLIKGSRFMR 949 (958)
T ss_pred HHHHcCCCEEEEEC--cCHH--HHHHhhhccc-----ceeeCCHHHHHHHHHHhcC-CCCEEEEEeCccCc
Confidence 2322 57888887 2222 2222222221 1237999999999999996 99999999999985
No 21
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.85 E-value=1.9e-20 Score=184.03 Aligned_cols=203 Identities=12% Similarity=0.118 Sum_probs=142.2
Q ss_pred CCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHHHH
Q psy1839 68 EKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETS 147 (304)
Q Consensus 68 ~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~~a 147 (304)
.++|++|+|+|+ ++++.++.+. |+++|||||+.||+++|| |+|+|+.+|++|+++++.+|+|. ||+....+.
T Consensus 159 ~~~d~~VlE~~~-~~l~~~~~~~-p~iaviTNI~~DHld~~~-t~e~~~~~K~~i~~~~~~~i~n~-dd~~~~~~~---- 230 (445)
T PRK04308 159 KKADVWVLELSS-FQLENTESLR-PTAATVLNISEDHLDRYD-DLLDYAHTKAKIFRGDGVQVLNA-DDAFCRAMK---- 230 (445)
T ss_pred CCCcEEEEEeCh-HHhCcCcccC-CCEEEEecCChHHhcccC-CHHHHHHHHHHHhcCCCEEEEeC-CcHHHHHHh----
Confidence 478999999996 5667788874 999999999999999999 89999999999999888999999 877664432
Q ss_pred HhhCCeEEEeCCCc--c----------------------cccCCC-------------------------cc--cccccC
Q psy1839 148 RALNCVLLEAPSIL--N----------------------YRWRGQ-------------------------PL--DEDWKN 176 (304)
Q Consensus 148 ~~~~~~~~~~~~~~--~----------------------~~~~~~-------------------------~l--~~~~~G 176 (304)
+ .++++++|+... + +++.+. ++ ..++||
T Consensus 231 ~-~~~~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~L~~f~~~~~ 309 (445)
T PRK04308 231 R-AGREVKWFSLEHEADFWLERETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPH 309 (445)
T ss_pred h-cCCcEEEecCCCCCceeEeccCCEEEEcCceeeehhccCCcChhhHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCC
Confidence 1 234455554210 0 000000 11 147999
Q ss_pred ceeeee-CCceeccCC--CCCCCcccc-cccCCC-----CCCCCCCchhHH---hcCC-CCeEEEecCCCCcchHHHHHH
Q psy1839 177 RFGVKL-DSRTAAPNG--GHEPGRPNV-GQGGGG-----FQSRSGDNSIRS---NANP-LSSVDCHNVNDQSNSFHKIAT 243 (304)
Q Consensus 177 R~e~~~-~~~~v~vD~--AHnp~al~~-l~~l~~-----~~~~~~d~~~r~---~~~~-~d~vi~T~~~dnpr~~~ii~~ 243 (304)
|||++. .+..++||+ +|||+|+++ +++++. +++.+++++.++ .+.+ +|.||+++ ++ .+.+++
T Consensus 310 R~e~~~~~~~~~~iDDs~~~n~~s~~~al~~~~~~~i~IlGg~~~~~~~~~~~~~l~~~~~~vil~G-~~----~~~l~~ 384 (445)
T PRK04308 310 RVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDALAGKAKGVFLIG-VD----APQIRR 384 (445)
T ss_pred ceEEEEeeCCeEEEEcCCCCCHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHhCcEEEEEC-CC----HHHHHH
Confidence 999974 234567765 799999999 988842 222335555553 3344 79999998 32 233333
Q ss_pred HHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEE---ecchhhH
Q psy1839 244 VASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILV---TGSLHLV 287 (304)
Q Consensus 244 ~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~Vlv---aGSl~lv 287 (304)
.+.... ..+..+.+.++|++.+.+.++ ++|+||+ |||+-|-
T Consensus 385 ~l~~~~--~~~~~~~~~e~a~~~~~~~~~-~~d~VL~sp~~~S~d~f 428 (445)
T PRK04308 385 DLDGCG--LNLTDCATLEEAVQRAYAQAE-AGDIVLLSPACASFDMF 428 (445)
T ss_pred HHHhcC--CCeEecCCHHHHHHHHHHhCC-CCCEEEEChhhhhhccc
Confidence 333211 124567899999999999886 8999997 9998775
No 22
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=99.85 E-value=8.1e-21 Score=199.65 Aligned_cols=206 Identities=14% Similarity=0.096 Sum_probs=142.8
Q ss_pred hCCCCEEEEeecCCCccccc---cccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHH
Q psy1839 67 KEKPDAVIMEVGIGGRYDNT---NIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQIL 143 (304)
Q Consensus 67 ~~~vd~aVlE~GlgGr~d~t---n~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l 143 (304)
..+++++|||+|+....+.. .++ +|+++|||||+.||++||| |+|+|+.+|++||+..+.+|+|. ||+....++
T Consensus 156 ~~~~~~~V~E~s~s~~~~~~~l~~~~-~PdiaViTNI~~dHLd~~g-t~e~y~~aK~~i~~~~~~~vin~-Dd~~~~~~~ 232 (822)
T PRK11930 156 NEEHELGIFEAGISQPGEMEALQKII-KPTIGILTNIGGAHQENFR-SIKQKIMEKLKLFKDCDVIIYNG-DNELISSCI 232 (822)
T ss_pred CCCCcEEEEEeCCCCCChHHHHhhhh-CCCEEEEcCccHHHHhhcC-CHHHHHHHHHHHhcCCCEEEEeC-CCHHHHHHH
Confidence 57899999999986444432 334 4999999999999999999 89999999999998778899999 888776654
Q ss_pred HHHHHhhCCeEEEeCCC---cc--------------cc-------------cCCC-------------------------
Q psy1839 144 LETSRALNCVLLEAPSI---LN--------------YR-------------WRGQ------------------------- 168 (304)
Q Consensus 144 ~~~a~~~~~~~~~~~~~---~~--------------~~-------------~~~~------------------------- 168 (304)
..... ..++++|+.. .+ +. +.+.
T Consensus 233 ~~~~~--~~~~~~~g~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi~~~~i~~ 310 (822)
T PRK11930 233 TKSNL--TLKLISWSRKDPEAPLYIPFVEKKEDHTVISYTYKGEDFHFEIPFIDDASIENLIHCIAVLLYLGYSADQIQE 310 (822)
T ss_pred Hhhhc--CCcEEEEcCCCCCCcEEEEEEEEcCCceEEEEEeCCceEEEEecCCCHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 43211 1223333321 00 00 0000
Q ss_pred cc--cccccCceeeee--CCceeccC-CCCCCCcccc-cccCCCCC--CC----------CCCchhH------HhcC-C-
Q psy1839 169 PL--DEDWKNRFGVKL--DSRTAAPN-GGHEPGRPNV-GQGGGGFQ--SR----------SGDNSIR------SNAN-P- 222 (304)
Q Consensus 169 ~l--~~~~~GR~e~~~--~~~~v~vD-~AHnp~al~~-l~~l~~~~--~~----------~~d~~~r------~~~~-~- 222 (304)
.+ ..+++||||++. ++..++.| |+|||++|++ |++++.+. ++ +|..... +.+. .
T Consensus 311 ~L~~f~~~~gR~e~~~~~~g~~vIdDSyn~nP~s~~aaL~~l~~~~~~~~~ilIlG~m~elG~~~~~~~~~l~~~l~~~~ 390 (822)
T PRK11930 311 RMARLEPVAMRLEVKEGINNCTLINDSYNSDLQSLDIALDFLNRRSQSKKKTLILSDILQSGQSPEELYRKVAQLISKRG 390 (822)
T ss_pred HHHhCCCCCCeeEEEEcCCCcEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEECChHhcCchHHHHHHHHHHHHHHcC
Confidence 01 147999999974 45778889 9999999999 99997542 22 2333332 2233 3
Q ss_pred CCeEEEecCCCCcchHHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhhH
Q psy1839 223 LSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLV 287 (304)
Q Consensus 223 ~d~vi~T~~~dnpr~~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~lv 287 (304)
.|.||+.+ + ....+.+ .... .++..++|.++|++++.+.++ ++|+||++||+.+=
T Consensus 391 i~~vi~~G-~----~~~~~~~---~~~~-~~~~~~~~~e~a~~~l~~~~~-~gDvVLlKGSr~~~ 445 (822)
T PRK11930 391 IDRLIGIG-E----EISSEAS---KFEG-TEKEFFKTTEAFLKSFAFLKF-RNELILVKGARKFE 445 (822)
T ss_pred CCEEEEEC-H----HHHHHHH---hcCc-cccEEECCHHHHHHHHHHhcC-CCCEEEEEcCCCCC
Confidence 78999997 2 1222222 2211 235668999999999999996 99999999999864
No 23
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=2.8e-20 Score=182.60 Aligned_cols=211 Identities=20% Similarity=0.207 Sum_probs=152.8
Q ss_pred hCCCCEEEEeecCCCcccc---ccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhcccc---CCceEEecCCCCCchH
Q psy1839 67 KEKPDAVIMEVGIGGRYDN---TNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCK 140 (304)
Q Consensus 67 ~~~vd~aVlE~GlgGr~d~---tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~---~~~~~V~~~~dd~~~~ 140 (304)
..++|++|+||||.++++. +.++ +|+++|||||+.+|++++| |+|.||++|++|+. +++.+|+|. |++..
T Consensus 152 ~~~~e~~VlEmG~~~~GeI~~l~~i~-~P~iavItnIg~aHle~fg-s~e~Ia~aK~Ei~~~~~~~g~ai~n~-d~~~~- 227 (451)
T COG0770 152 PADTEYAVLEMGMNHPGEIAELSEIA-RPDIAVITNIGEAHLEGFG-SREGIAEAKAEILAGLRPEGIAILNA-DNPLL- 227 (451)
T ss_pred CCcccEEEEEcCCCCCCcHHHHhccc-CCCEEEEcChhHHHHHhcC-CHHHHHHHHHHHHhccCCCcEEEEEC-ccHHH-
Confidence 4559999999999877776 5555 5999999999999999999 69999999999995 677899999 87764
Q ss_pred HHHHHHHHhh-CCeEEEeCCC--cccc----------------cC-----------CC----------------c-----
Q psy1839 141 QILLETSRAL-NCVLLEAPSI--LNYR----------------WR-----------GQ----------------P----- 169 (304)
Q Consensus 141 ~~l~~~a~~~-~~~~~~~~~~--~~~~----------------~~-----------~~----------------~----- 169 (304)
...+... ..++++|+.. .++. .. +. +
T Consensus 228 ---~~~~~~~~~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~l~~~G~hn~~NalaA~a~a~~lG~~~e~ 304 (451)
T COG0770 228 ---KNWAAKIGNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEAEFELPLPGRHNVTNALAAAALALELGLDLEE 304 (451)
T ss_pred ---HHHHhhcCCCcEEEEcCCCCCceeeEEEEEcCCceEEEEEecCceEEEEecCCcHhHHHHHHHHHHHHHHcCCCHHH
Confidence 3333332 3567777743 1100 00 00 0
Q ss_pred ----c--cccccCceeee-eCCceeccCCCCC--CCcccc-cccCCCCC--CC---------CCCchhH------Hhc-C
Q psy1839 170 ----L--DEDWKNRFGVK-LDSRTAAPNGGHE--PGRPNV-GQGGGGFQ--SR---------SGDNSIR------SNA-N 221 (304)
Q Consensus 170 ----l--~~~~~GR~e~~-~~~~~v~vD~AHn--p~al~~-l~~l~~~~--~~---------~~d~~~r------~~~-~ 221 (304)
+ ..+++|||+++ ..+...+||++|| |++|++ ++.+..+. ++ +|+.+.. +.+ .
T Consensus 305 i~~~L~~~~~~~gR~~~~~~~~g~~iIdD~YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~ELG~~s~~~H~~v~~~~~~ 384 (451)
T COG0770 305 IAAGLKELKPVKGRLEVILLANGKTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGDMLELGEESEELHEEVGEYAVE 384 (451)
T ss_pred HHHHHHhcCCCCccceeEecCCCcEEEEcCCCCCHHHHHHHHHHHhhCccCCcEEEeCChhhhCccHHHHHHHHHHHHHh
Confidence 0 15899999954 4456789999999 999999 99887764 21 5666654 222 3
Q ss_pred C-CCeEEEecCCCCcchHHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhh-HHHHHHHhc
Q psy1839 222 P-LSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHL-VGAFLNVLS 295 (304)
Q Consensus 222 ~-~d~vi~T~~~dnpr~~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~l-v~~~~~~l~ 295 (304)
. .|.+++++ + ..+.+++ .+... ..++.+.++.++......+ ++|+|||+||+++ ...+...|.
T Consensus 385 ~~~d~v~~~G--~---~~~~i~~---~~~~~--~~~f~~~~~l~~~l~~~l~-~gd~vLvKgSr~~~le~vv~~l~ 449 (451)
T COG0770 385 AGIDLVFLVG--E---LSKAIAE---ALGNK--GIYFADKEELITSLKALLR-KGDVVLVKGSRGMKLEKVVDALL 449 (451)
T ss_pred cCceEEEEEc--c---chHHHHH---hcCCC--eEecCCHHHHHHHHHHhcC-CCCEEEEEcCccccHHHHHHHHh
Confidence 3 79999998 2 2233333 33222 6778999999999999996 9999999999999 566666553
No 24
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.83 E-value=7.1e-20 Score=180.40 Aligned_cols=200 Identities=12% Similarity=0.038 Sum_probs=138.2
Q ss_pred HhCCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHH
Q psy1839 66 VKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLE 145 (304)
Q Consensus 66 ~~~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~ 145 (304)
...+.|++|+|+|+ +.++.++.+ +|+++|||||+.||+++|| |+|+|+.+|++|+++++++|+|. ||+.+..+...
T Consensus 158 ~~~~~d~~VlE~~s-~~l~~~~~~-~p~iaVITNI~~DHld~~g-t~e~~~~~K~~i~~~~~~~Vln~-dd~~~~~~~~~ 233 (459)
T PRK02705 158 KAQKPDWIVAELSS-YQIESSPEL-APKIGIWTTFTPDHLERHG-TLENYFAIKASLLERSEIRILNG-DDPYLRQHRSS 233 (459)
T ss_pred cCCCCCEEEEEccc-cccccCccc-CCCEEEEecCChhhhcccC-CHHHHHHHHHHHhccCCEEEEEC-CCHHHHHHHhc
Confidence 35678999999998 567877776 4999999999999999999 99999999999999989999999 88877655332
Q ss_pred HHHhhCCeEEEeCC-----------------------Cc------ccccCCC-------------------------cc-
Q psy1839 146 TSRALNCVLLEAPS-----------------------IL------NYRWRGQ-------------------------PL- 170 (304)
Q Consensus 146 ~a~~~~~~~~~~~~-----------------------~~------~~~~~~~-------------------------~l- 170 (304)
. .. .++++. .. .++..+. .+
T Consensus 234 ~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgv~~~~i~~~L~ 308 (459)
T PRK02705 234 W----PK-GYWTSTQGKASLLGQADGWILEEGWVVERGEPLFPLSALKMPGAHNLQNLLLAVAAARLAGLSAEAIAEALR 308 (459)
T ss_pred C----Cc-eEEeccCCccccccccceeEecCCEEEECCcceeeHHHcCCccHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 10 111110 00 0010000 11
Q ss_pred -cccccCceeeee--CCceeccC-CCCCCCcccc-cccCCC-----CCCCCCCchhH---HhcCC-CCeEEEecCCCCcc
Q psy1839 171 -DEDWKNRFGVKL--DSRTAAPN-GGHEPGRPNV-GQGGGG-----FQSRSGDNSIR---SNANP-LSSVDCHNVNDQSN 236 (304)
Q Consensus 171 -~~~~~GR~e~~~--~~~~v~vD-~AHnp~al~~-l~~l~~-----~~~~~~d~~~r---~~~~~-~d~vi~T~~~dnpr 236 (304)
..+++||||++. ++..++.| |+|||+|+++ |++++. +++.+++++.. +.+.. .|.+|+++ +
T Consensus 309 ~f~~~~gR~e~~~~~~~~~ii~Ds~a~N~~s~~~al~~l~~~~i~IlGg~~~~~d~~~~~~~l~~~~~~vi~~g-~---- 383 (459)
T PRK02705 309 SFPGVPHRLERIGTINGIDFINDSKATNYDAAEVGLKAVPGPVILIAGGEAKQGDDSAWLKQIKAKAAAVLLFG-E---- 383 (459)
T ss_pred hCCCCCCceEEEEeeCCcEEEEeCCCCCHHHHHHHHHhCCCCeEEEecCccCCCCHHHHHHHHHhheeEEEEEC-C----
Confidence 147999999874 35678899 8999999999 988852 12234455554 33334 78999997 2
Q ss_pred hHHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCC--cEEEE
Q psy1839 237 SFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKE--YHILV 280 (304)
Q Consensus 237 ~~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~--d~Vlv 280 (304)
..+.+++.+.....+.++..++|.++|++.|.+.++ ++ |+||+
T Consensus 384 ~~~~l~~~l~~~~~~~~~~~~~~~~eA~~~a~~~a~-~g~~~~vll 428 (459)
T PRK02705 384 AAPTLAQRLQESGYTGEYEIVETLDEAVPRAFELAK-ELQAKSVLL 428 (459)
T ss_pred CHHHHHHHHHhcCCCcceEEcCCHHHHHHHHHHHhC-CCCCCEEEe
Confidence 133343433322111236678999999999999886 66 68887
No 25
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.82 E-value=1.5e-19 Score=177.91 Aligned_cols=202 Identities=14% Similarity=0.139 Sum_probs=142.2
Q ss_pred CCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHHHH
Q psy1839 68 EKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETS 147 (304)
Q Consensus 68 ~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~~a 147 (304)
.+.|++|+|+|... ++.++.+. |+++|||||+.||+++|| |+|+|+.+|++|++..+.+|+|. ||+.+..+...
T Consensus 153 ~~~~~~V~E~ss~~-l~~~~~~~-P~iaVITNI~~DHld~~g-s~e~~~~~K~~i~~~~~~~V~n~-dd~~~~~~~~~-- 226 (448)
T PRK03803 153 DDPELYVLELSSFQ-LETTHSLN-AEVATVLNISEDHMDRYS-DLEAYHQAKHRIYRGAKQVVFNR-DDALTRPLVPD-- 226 (448)
T ss_pred CCCCEEEEEcChhh-hCcCcccC-ccEEEEecCChhHcccCC-CHHHHHHHHHHHHhCCCeEEEeC-CCHHHHHHhhc--
Confidence 46799999998843 36788875 999999999999999999 89999999999999888899999 88877554321
Q ss_pred HhhCCeEEEeCCC----------------------------cccccCCC-------------------------cc--cc
Q psy1839 148 RALNCVLLEAPSI----------------------------LNYRWRGQ-------------------------PL--DE 172 (304)
Q Consensus 148 ~~~~~~~~~~~~~----------------------------~~~~~~~~-------------------------~l--~~ 172 (304)
..++++|+.. ..++..+. .+ ..
T Consensus 227 ---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~~~i~~~L~~f~ 303 (448)
T PRK03803 227 ---NQPCLSFGLNAPDFDEWGLREGDGETYLAHGFERLMPVRELKLRGSHNLANALAALALGEAAGLPKEAMLEVLRTFT 303 (448)
T ss_pred ---CCcEEEEeCCCCCcCceEEEecCCeEEEEeCCceEEehhccCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhCC
Confidence 1223333210 00000000 11 14
Q ss_pred cccCceeeee--CCceeccC-CCCCCCcccc-cccCCCC---------CCCCCCchhHH---hcCC-CCeEEEecCCCCc
Q psy1839 173 DWKNRFGVKL--DSRTAAPN-GGHEPGRPNV-GQGGGGF---------QSRSGDNSIRS---NANP-LSSVDCHNVNDQS 235 (304)
Q Consensus 173 ~~~GR~e~~~--~~~~v~vD-~AHnp~al~~-l~~l~~~---------~~~~~d~~~r~---~~~~-~d~vi~T~~~dnp 235 (304)
.+|+|||++. ++..++.| ++|||+|+.+ +++++.+ ++.+++++.++ .+.+ ++.+|+++ . +
T Consensus 304 g~~~R~e~v~~~~gv~~idDs~atN~~a~~~al~~l~~~~~~~iilI~Gg~~k~~d~~~l~~~l~~~~~~vil~G-~-~- 380 (448)
T PRK03803 304 GLPHRCEWVREVAGVDYYNDSKGTNVGATVAAIEGLGAHIQGKLVLIAGGDGKGADFSPLREPVAKYVRAVVLIG-R-D- 380 (448)
T ss_pred CCCCceEEEEEeCCeEEEEcCCcCCHHHHHHHHHhhhhcCCCCEEEEECCCCCCCCHHHHHHHHHhhCCEEEEEC-C-C-
Confidence 7999999974 34556677 5999999999 9888432 12256666663 3344 78899997 2 1
Q ss_pred chHHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEE---ecchhhH
Q psy1839 236 NSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILV---TGSLHLV 287 (304)
Q Consensus 236 r~~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~Vlv---aGSl~lv 287 (304)
.+.+++.+... ..+..+++.++|++.+.+.++ ++|+||+ |||+.|-
T Consensus 381 --~~~i~~~l~~~---~~~~~~~~~~~a~~~a~~~a~-~gdvVL~SPa~aSfd~f 429 (448)
T PRK03803 381 --ADKIAAALGGA---VPLVRVATLAEAVAKAAELAQ-AGDIVLLSPACASLDMF 429 (448)
T ss_pred --HHHHHHHHhcC---CCEEEeCCHHHHHHHHHHhCC-CCCEEEeCchhhccccc
Confidence 33344433321 235667999999999999996 8999997 9999875
No 26
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=99.82 E-value=2.1e-19 Score=175.83 Aligned_cols=200 Identities=12% Similarity=0.069 Sum_probs=139.1
Q ss_pred CCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccC---CceEEecCCCCCchHHHHH
Q psy1839 68 EKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIAVTSANQRGPCKQILL 144 (304)
Q Consensus 68 ~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~---~~~~V~~~~dd~~~~~~l~ 144 (304)
.+.|++|+|+|.. .++.++.+ +|+++|||||+.||+++|| |+|+|+.+|++|++. ++.+|+|. ||+....
T Consensus 148 ~~~~~~V~E~~~~-~l~~~~~~-~p~iaViTNI~~DHld~~g-s~e~~~~~K~~i~~~~~~~~~~i~n~-dd~~~~~--- 220 (433)
T TIGR01087 148 EGAELYVLELSSF-QLETTESL-RPEIALILNISEDHLDWHG-SFEDYVAAKLKIFARQTEGDVAVLNA-DDPRFAR--- 220 (433)
T ss_pred cCCCEEEEEcChh-HhcCCccc-CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCCCCCEEEEEC-CCHHHHH---
Confidence 5789999999953 45567766 4999999999999999999 899999999999963 46899999 7775533
Q ss_pred HHHHhhCCeEEEeCCCc--c-----------c-----c--cCCC-------------------------cc--cccccCc
Q psy1839 145 ETSRALNCVLLEAPSIL--N-----------Y-----R--WRGQ-------------------------PL--DEDWKNR 177 (304)
Q Consensus 145 ~~a~~~~~~~~~~~~~~--~-----------~-----~--~~~~-------------------------~l--~~~~~GR 177 (304)
.+...++++++|+... + + . +.+. ++ ..+++||
T Consensus 221 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~lgi~~~~i~~~L~~f~g~~~R 299 (433)
T TIGR01087 221 -LAQKSKAQVIWFSVEKDAERGLCIRDGGLYLKPNDLEGSLLGLHNAENILAAIALAKSLGLNLEAILEALRSFKGLPHR 299 (433)
T ss_pred -hhhhcCceEEEEeCCccCCCceEEECCEEEEeccccccCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCc
Confidence 3333445666665321 0 0 0 0000 01 1479999
Q ss_pred eeeee--CCceeccCC-CCCCCcccc-cccCCC-----CCCCCCCchhHH---hcCC-CCeEEEecCCCCcchHHHHHHH
Q psy1839 178 FGVKL--DSRTAAPNG-GHEPGRPNV-GQGGGG-----FQSRSGDNSIRS---NANP-LSSVDCHNVNDQSNSFHKIATV 244 (304)
Q Consensus 178 ~e~~~--~~~~v~vD~-AHnp~al~~-l~~l~~-----~~~~~~d~~~r~---~~~~-~d~vi~T~~~dnpr~~~ii~~~ 244 (304)
||++. ++..++.|| +|||+|+++ +++++. +++.+++++..+ .+.. .+.+++++ . + .+.+.+.
T Consensus 300 ~e~v~~~~g~~~idD~~atn~~a~~~al~~~~~~ii~I~Gg~~~~~d~~~~~~~l~~~~~~v~~~G-~-~---~~~l~~~ 374 (433)
T TIGR01087 300 LEYVGQKNGVHFYNDSKATNVHATLAALSAFDNPVILIVGGDDKGADFSPLAPAAAGKVKAVLAIG-E-D---AAKIAPL 374 (433)
T ss_pred eEEEEEECCEEEEEcCCCCCHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHhhCCEEEEEC-C-C---HHHHHHH
Confidence 99973 467788995 999999999 988842 223455666553 3334 57888887 2 1 2334444
Q ss_pred HhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecc
Q psy1839 245 ASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGS 283 (304)
Q Consensus 245 ~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGS 283 (304)
+.... ..+..+.+.++|++.+.+.++ ++|+||+.|-
T Consensus 375 ~~~~~--~~~~~~~~~~~a~~~~~~~~~-~gdiVLlspa 410 (433)
T TIGR01087 375 LKEAG--LSVYLVESLEEAVQAAREVAS-PGDVVLLSPA 410 (433)
T ss_pred HHhCC--CcEEEeCCHHHHHHHHHHhcC-CCCEEEECcc
Confidence 43222 235567899999999998886 8999999763
No 27
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.80 E-value=2.3e-19 Score=178.00 Aligned_cols=199 Identities=13% Similarity=0.082 Sum_probs=132.9
Q ss_pred hCCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHHH
Q psy1839 67 KEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLET 146 (304)
Q Consensus 67 ~~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~~ 146 (304)
..+++++|+|+|+.+. +-+..+ +|+++|||||+.||+++|| |+|+|+.+|+.||+. +.+|+|. ||+.+..+....
T Consensus 167 ~~~~~~~V~E~ss~~l-~~~~~~-~pdiaViTNi~~dHLd~~~-s~e~y~~aK~~l~~~-~~~vln~-Dd~~~~~~~~~~ 241 (473)
T PRK00141 167 QPRIDVLVAELSSFQL-HWSPTL-TPDVGVVLNLAEDHIDWHG-SMRDYAADKAKVLRG-PVAVIGA-DDEYVVQLTSAA 241 (473)
T ss_pred CCCCCEEEEecCCccc-ccCccc-CCCEEEEcCCChhhccccC-CHHHHHHHHHHHhhC-CEEEEEC-CCHHHHHHHhhc
Confidence 4578999999998764 334445 4999999999999999999 899999999999974 5789999 888775543221
Q ss_pred HHhhCCeEEEeCCC--c--c----------------c--------ccCCC-------------------------cc-cc
Q psy1839 147 SRALNCVLLEAPSI--L--N----------------Y--------RWRGQ-------------------------PL-DE 172 (304)
Q Consensus 147 a~~~~~~~~~~~~~--~--~----------------~--------~~~~~-------------------------~l-~~ 172 (304)
...++++|+.. . + + +..+. ++ ..
T Consensus 242 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~a~~~~lgi~~~~i~~~l~~~ 318 (473)
T PRK00141 242 ---DLSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPAGVLDALAAAAVARSQGVAPEAIARALSSF 318 (473)
T ss_pred ---CCCcEEEEeCCCCCcCcceEECCEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 11123333210 0 0 0 00000 01 12
Q ss_pred cccC-ceeeee-CCceeccCC--CCCCCcccc-cccCCC----CCCCCCCchhHHhc---CC-CCeEEEecCCCCcch--
Q psy1839 173 DWKN-RFGVKL-DSRTAAPNG--GHEPGRPNV-GQGGGG----FQSRSGDNSIRSNA---NP-LSSVDCHNVNDQSNS-- 237 (304)
Q Consensus 173 ~~~G-R~e~~~-~~~~v~vD~--AHnp~al~~-l~~l~~----~~~~~~d~~~r~~~---~~-~d~vi~T~~~dnpr~-- 237 (304)
.+++ |||++. .++.+++|+ ||||+++++ |++++. ++|.++||++++.+ .. .+.+++++ ++|.
T Consensus 319 ~~~~~R~e~~~~~~~~~iiDdsyahNp~s~~~~l~~l~~~~~i~gG~~kdkd~~~~~~~l~~~~~~~~~~~---~~r~~~ 395 (473)
T PRK00141 319 EVAGHRGQVVAEHGGVTWIDNSKATNPHAADAALAGHESVVWVAGGQLKGADIDDLIRTHAPRIKAAVVLG---VDRAEI 395 (473)
T ss_pred CCCCCceEEEEEeCCEEEEEcCCCCCHHHHHHHHHhcCCEEEEecCccCCCChHHHHHHHHhhccEEEEEC---CCHHHH
Confidence 4555 999974 346788887 999999999 999874 33567999998544 33 56677764 2233
Q ss_pred HHHHHHHHhhcCCCCcEEE--eCCH----HHHHHHHhhcCCCCCcEEEEe
Q psy1839 238 FHKIATVASALSQRSKVVE--FSSV----LDTYNFKYGLDPSKEYHILVT 281 (304)
Q Consensus 238 ~~ii~~~~~g~~~~~~~~~--~~dr----~~AI~~a~~~a~~~~d~Vlva 281 (304)
.+.+.+ ++.. ..+.. .+|+ ++|++.|++.++ ++|+||++
T Consensus 396 ~~~l~~---~~~~-~~~~~~~~~~~~~~l~~Av~~a~~~a~-~gd~Vlls 440 (473)
T PRK00141 396 VAALAE---HAPD-APVTVTDSTDPEEAMEEAVSAAVSLAE-PGDTVLLA 440 (473)
T ss_pred HHHHHh---cCCC-CcEEEecCcccccCHHHHHHHHHHhCC-CCCEEEeC
Confidence 333333 2222 12332 3466 999999999996 89999984
No 28
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.80 E-value=1e-18 Score=174.23 Aligned_cols=203 Identities=14% Similarity=0.123 Sum_probs=137.4
Q ss_pred CCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHHHHHh
Q psy1839 70 PDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRA 149 (304)
Q Consensus 70 vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~~a~~ 149 (304)
.+++|+|+++.+. +.++.+ +|+++|||||+.||+++|| |+|+|+.+|++||++++.+|+|. |||.+..+.....
T Consensus 174 ~~~~V~E~ss~~l-~~~~~~-~p~iaviTNI~~DHld~~g-s~e~y~~aK~~i~~~~~~~Vln~-dd~~~~~~~~~~~-- 247 (498)
T PRK02006 174 PDVWVLELSSFQL-ETTHTL-APDAATVLNITQDHLDWHG-SMAAYAAAKARIFGPRTVRVLNR-DDARVMAMAPPGG-- 247 (498)
T ss_pred CcEEEEEccHHHh-Cccccc-CCCEEEEcCCChhhhcccC-CHHHHHHHHHHHcCCCCEEEEeC-CCHHHHHHhhccC--
Confidence 3899999997532 445555 4999999999999999999 79999999999999888999999 8888765543321
Q ss_pred hCCeEEEeCCC-------------c-----------------------------------------ccccCCC-------
Q psy1839 150 LNCVLLEAPSI-------------L-----------------------------------------NYRWRGQ------- 168 (304)
Q Consensus 150 ~~~~~~~~~~~-------------~-----------------------------------------~~~~~~~------- 168 (304)
...+++|+.. . .++..+.
T Consensus 248 -~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Nal 326 (498)
T PRK02006 248 -AADAVTFGLDEPAADGDYGLLRDNGMAWLVEAEDRDAADPAPSRRRKKDAAPPPDIRLKRLMPADALRIRGLHNAANAL 326 (498)
T ss_pred -CccEEEEeCCCccccccceEEecCCeEEEEecCcccccccccccccccccccccccchhceeeHhhcCCCcHHHHHHHH
Confidence 1112222110 0 0000000
Q ss_pred ------------------cc--cccccCceeeee--CCceeccC-CCCCCCcccc-cccCCC-----CCCCCCCchhHHh
Q psy1839 169 ------------------PL--DEDWKNRFGVKL--DSRTAAPN-GGHEPGRPNV-GQGGGG-----FQSRSGDNSIRSN 219 (304)
Q Consensus 169 ------------------~l--~~~~~GR~e~~~--~~~~v~vD-~AHnp~al~~-l~~l~~-----~~~~~~d~~~r~~ 219 (304)
.+ ..+++||||++. ++..++-| ++|||+++.+ |+.++. +++.+++++.++.
T Consensus 327 aAia~~~~lgi~~~~i~~aL~~f~~~~gR~e~~~~~~g~~~idDs~~tn~~s~~~al~~~~~~ii~IlGg~~~~~~~~~~ 406 (498)
T PRK02006 327 AALALARAIGLPAAPLLHGLREYRGEPHRVELVATIDGVDYYDDSKGTNVGATVAALDGLAQRVVLIAGGDGKGQDFSPL 406 (498)
T ss_pred HHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEEECCEEEEEcCCCCCHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHH
Confidence 01 147999999973 34444445 3789999988 887731 1222346666633
Q ss_pred ---cCC-CCeEEEecCCCCcchHHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEE---ecchhhH
Q psy1839 220 ---ANP-LSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILV---TGSLHLV 287 (304)
Q Consensus 220 ---~~~-~d~vi~T~~~dnpr~~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~Vlv---aGSl~lv 287 (304)
+.+ +|.||+++ ++ .+.+++.+.+.. ..+..++|+++|+++|.+.++ ++|+||+ |+|+-+-
T Consensus 407 ~~~l~~~~~~vi~~G-~~----~~~i~~~~~~~~--~~~~~~~~~~eAi~~a~~~~~-~gd~VLlsp~~~S~d~f 473 (498)
T PRK02006 407 AAPVARHARAVVLIG-RD----APAIRAALAGTG--VPLVDAATLEEAVRAAAALAQ-PGDAVLLSPACASLDMF 473 (498)
T ss_pred HHHHHHhCCEEEEEc-CC----HHHHHHHHhhCC--CceEecCCHHHHHHHHHHhcC-CCCEEEEChhhcccccc
Confidence 334 89999997 32 233333333322 235678999999999999996 9999998 8998765
No 29
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.79 E-value=1.3e-18 Score=170.68 Aligned_cols=200 Identities=17% Similarity=0.115 Sum_probs=136.1
Q ss_pred CCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccC---CceEEecCCCCCchHHHHH
Q psy1839 68 EKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIAVTSANQRGPCKQILL 144 (304)
Q Consensus 68 ~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~---~~~~V~~~~dd~~~~~~l~ 144 (304)
.+.|++|+|++.-+.. .++.+ +|+++|||||+.||+++|| |+|+|+.+|++|+++ .+.+|+|. |++.+.+..
T Consensus 155 ~~~~~~V~E~ss~~~~-~~~~~-~P~iaVITnI~~DHld~~g-t~e~i~~~K~~i~~~~~~~~~~v~n~-dd~~~~~~~- 229 (447)
T PRK02472 155 TADDTLVMELSSFQLM-GIETF-RPHIAVITNIYPAHLDYHG-TFENYVAAKWNIQKNQTEDDYLVINF-DQEEVKELA- 229 (447)
T ss_pred CCCCEEEEEcCchhhC-ccccc-CCCEEEEeccChhhhcccC-CHHHHHHHHHHHHhcCCCCCEEEEeC-CcHHHHHHH-
Confidence 3579999999874432 35555 4999999999999999999 999999999999974 45699999 888764433
Q ss_pred HHHHhhCCeEEEeCCCc------------------------ccccCCC-------------------------cc--ccc
Q psy1839 145 ETSRALNCVLLEAPSIL------------------------NYRWRGQ-------------------------PL--DED 173 (304)
Q Consensus 145 ~~a~~~~~~~~~~~~~~------------------------~~~~~~~-------------------------~l--~~~ 173 (304)
++.++++++++... .++..+. .+ ..+
T Consensus 230 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~lgi~~~~i~~~L~~f~~ 306 (447)
T PRK02472 230 ---KQTKATVVPFSTTEKVEDGAYIKDGALYFKGEKIMAADDIVLPGSHNLENALAAIAAAKLLGVSNEAIREVLSTFSG 306 (447)
T ss_pred ---hhcCceEEEeecCCCCcCceEEECCEEEECCceEEehhhcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 22233444443210 0000000 11 147
Q ss_pred ccCceeeee--CCceeccCC-CCCCCcccc-cccCCC-----CCCCCCCchhHHhcC---CCCeEEEecCCCCcchHHHH
Q psy1839 174 WKNRFGVKL--DSRTAAPNG-GHEPGRPNV-GQGGGG-----FQSRSGDNSIRSNAN---PLSSVDCHNVNDQSNSFHKI 241 (304)
Q Consensus 174 ~~GR~e~~~--~~~~v~vD~-AHnp~al~~-l~~l~~-----~~~~~~d~~~r~~~~---~~d~vi~T~~~dnpr~~~ii 241 (304)
|+||||++. +++.++.|+ +|||+++.+ |+.++. +++..++++..+.+. .+|.|++++ . + .+.+
T Consensus 307 ~~~R~e~~~~~~g~~vi~D~~a~N~~s~~~al~~~~~~ii~I~g~~~~~~~~~~l~~~l~~~~~v~~~G-~-~---~~~l 381 (447)
T PRK02472 307 VKHRLQYVGTIDGRKFYNDSKATNILATQKALSGFNQPVVLLAGGLDRGNEFDELVPYLKNVKAMVVFG-E-T---AEKL 381 (447)
T ss_pred CCCcceEEEEECCeEEEECCCCCCHHHHHHHHHhCCCCEEEEECCCCCCCCHHHHHHHHhccCEEEEEC-C-C---HHHH
Confidence 999999973 478899996 999999999 877631 222234566654332 278999997 2 2 2334
Q ss_pred HHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecc
Q psy1839 242 ATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGS 283 (304)
Q Consensus 242 ~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGS 283 (304)
++.+.... .++..+.|.++|++.+.+.++ ++|+||+.+.
T Consensus 382 ~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~-~~d~VLls~a 420 (447)
T PRK02472 382 ARAAEKAG--ITVVEADNVEDAVPKAYELSE-PGDVILLSPA 420 (447)
T ss_pred HHHHHhCC--CceEEcCCHHHHHHHHHHhCC-CCCEEEeCcc
Confidence 44433221 235667899999999988885 8999999864
No 30
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=99.79 E-value=1.1e-18 Score=171.83 Aligned_cols=214 Identities=14% Similarity=0.064 Sum_probs=136.4
Q ss_pred CCCEEEEeecCCCcccc---cccc-CCCcEEEEcccchhhhhccCCCHHHHHHHHhcccc--C-CceEEecCCCCCchHH
Q psy1839 69 KPDAVIMEVGIGGRYDN---TNII-PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK--P-NCIAVTSANQRGPCKQ 141 (304)
Q Consensus 69 ~vd~aVlE~GlgGr~d~---tn~~-~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~--~-~~~~V~~~~dd~~~~~ 141 (304)
+.|++|+|+|+....+. ..+. -+|+++|||||+.||+++|| |+|+|+.+|++|++ + .+.+|+|. ||+.+..
T Consensus 150 ~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~-t~e~~~~~K~~i~~~~~~~~~~i~n~-dd~~~~~ 227 (448)
T TIGR01081 150 ESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFD-DLKAIQRQFHHLVRTVPGEGLILCPG-RDQSLKD 227 (448)
T ss_pred CCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccC-CHHHHHHHHHHHHHhCCCCCEEEEeC-CCHHHHH
Confidence 47999999998432221 2221 15899999999999999998 89999999999997 3 46789999 8887766
Q ss_pred HHHHHHHhhCCeEEEeCCC----------------------c--cc--ccCC------------------C-------cc
Q psy1839 142 ILLETSRALNCVLLEAPSI----------------------L--NY--RWRG------------------Q-------PL 170 (304)
Q Consensus 142 ~l~~~a~~~~~~~~~~~~~----------------------~--~~--~~~~------------------~-------~l 170 (304)
++...+. ..+.+++.. . .+ ++.+ . ++
T Consensus 228 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~A~a~~~~lgi~~~~i~~~L 304 (448)
T TIGR01081 228 TLAKGCW---SEQEFFGEQGEWQAEKITADGSHFDVLLDGEKVGEVKWSLVGRHNMHNALMAIAAARHVGVAIEDACEAL 304 (448)
T ss_pred HHHhccC---CCeEEECCCCCEEEEEEecCCcEEEEEECCceeEEEEecCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5543221 111112100 0 00 1100 0 11
Q ss_pred --cccccCceeeee--CCceeccCCCCCCCcccc-cccCCCC-CC-C----CC--Cc--------hh-HHhcCCCCeEEE
Q psy1839 171 --DEDWKNRFGVKL--DSRTAAPNGGHEPGRPNV-GQGGGGF-QS-R----SG--DN--------SI-RSNANPLSSVDC 228 (304)
Q Consensus 171 --~~~~~GR~e~~~--~~~~v~vD~AHnp~al~~-l~~l~~~-~~-~----~~--d~--------~~-r~~~~~~d~vi~ 228 (304)
...++||||++. +++.++.|+||||+++++ +++++.+ ++ + .+ ++ ++ ...+..+|.+++
T Consensus 305 ~~~~~~~~R~e~~~~~~g~~ii~D~ahNp~s~~~~l~~l~~~~~~~~ii~I~g~~~~~~~lg~~~~~l~~~~~~~d~vi~ 384 (448)
T TIGR01081 305 GSFVNAKRRLELKGEANGITVYDDFAHHPTAIEATLQGLRQKVGGARILAVLEPRSNTMKLGVHKDDLAPSLGRADQVFL 384 (448)
T ss_pred HhCCCCCcceEEEEecCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCeEEEEECCCcchhhhhhHHHHHHHHHHhCCEEEE
Confidence 146899999973 467899999999999999 9988642 21 2 11 11 11 112222799999
Q ss_pred ecCCCCcchHHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhhHHHHHHH
Q psy1839 229 HNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNV 293 (304)
Q Consensus 229 T~~~dnpr~~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~lv~~~~~~ 293 (304)
++ .+ ++... +++.+.... ..+..+++.++|++.+.+.++ ++|+|||.|.=..-.....+
T Consensus 385 ~~-~~-~~~~~-~~~~~~~~~--~~~~~~~~~~~a~~~~~~~a~-~gd~VLv~gag~~~~~~~~~ 443 (448)
T TIGR01081 385 YQ-PG-QIPWD-VAEVAAQCV--QPANVSADFDAFVAMIVKNAQ-PGDHILVMSNGGFGGIHGKL 443 (448)
T ss_pred cC-CC-CCccC-HHHHHHhcC--CCeEEcCCHHHHHHHHHHhCC-CCCEEEEECCCCHHHHHHHH
Confidence 97 22 22111 333332221 234567899999999999996 89999999765544433333
No 31
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.79 E-value=1.2e-18 Score=172.71 Aligned_cols=201 Identities=11% Similarity=-0.019 Sum_probs=131.9
Q ss_pred CCCCEEEEeecCCCcccccc-ccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCC--ceEEecCCCCCchHHHHH
Q psy1839 68 EKPDAVIMEVGIGGRYDNTN-IIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPN--CIAVTSANQRGPCKQILL 144 (304)
Q Consensus 68 ~~vd~aVlE~GlgGr~d~tn-~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~--~~~V~~~~dd~~~~~~l~ 144 (304)
.+.+++|+|+|+....+... .+ +|+++|||||+.||+++|| |+++|..+|++||+.. +.+|+|. ||+....+.
T Consensus 162 ~~~~~~VlE~ss~q~~~~~~~~~-~P~iaVItNI~~DHld~~g-s~e~y~~aK~~i~~~~~~~~~v~n~-dd~~~~~~~- 237 (468)
T PRK04690 162 PAPEYWAIELSSYQTGDVARSGA-RPELAVVLNLFPEHLDWHG-GEARYYRDKLSLVTEGRPRIALLNA-ADPRLAALQ- 237 (468)
T ss_pred CCCcEEEEEecCCcccccccccC-CCCEEEEcCCCHHHhcccC-CHHHHHHHHHHHHhCCCCCeEEEeC-ccHHHHHHh-
Confidence 46799999999854333321 13 5999999999999999999 8999999999999743 5689999 877654321
Q ss_pred HHHHhhCCeEEEeCCCc--------------------ccccCC------------------C-------ccc--ccccCc
Q psy1839 145 ETSRALNCVLLEAPSIL--------------------NYRWRG------------------Q-------PLD--EDWKNR 177 (304)
Q Consensus 145 ~~a~~~~~~~~~~~~~~--------------------~~~~~~------------------~-------~l~--~~~~GR 177 (304)
....++++|+... .++..+ . .+. ..||||
T Consensus 238 ----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~~A~a~~~~lgi~~~~i~~~l~~~~~~~gR 313 (468)
T PRK04690 238 ----LPDSEVVWFNHPDGWHVRGDVVYRGEQALFDTALVPLPGRHNRGNLCAVLAALEALGLDAVALAPAAAGFRPLPNR 313 (468)
T ss_pred ----cCCCeEEEeeCCccceecceEEEcCCceEEeeccccCccHhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCC
Confidence 1123344443210 000000 0 111 379999
Q ss_pred eeeeeC-CceeccC--CCCCCCcccc-cccCCC------CCCCCCCchhHHh---cCC-C-CeEEEecCCCCcchHHHHH
Q psy1839 178 FGVKLD-SRTAAPN--GGHEPGRPNV-GQGGGG------FQSRSGDNSIRSN---ANP-L-SSVDCHNVNDQSNSFHKIA 242 (304)
Q Consensus 178 ~e~~~~-~~~v~vD--~AHnp~al~~-l~~l~~------~~~~~~d~~~r~~---~~~-~-d~vi~T~~~dnpr~~~ii~ 242 (304)
||++.. ++..++| +||||+++++ |+.+.. +++.++|+|.+.. +.+ . +.+++++ .++||..+.++
T Consensus 314 ~e~~~~~~g~~iidDs~ahNp~a~~~al~~~~~~~i~~i~Gg~~k~kd~~~l~~~l~~~~~~~v~~~g-~~~~r~~~~l~ 392 (468)
T PRK04690 314 LQELGSRDGITYVNDSISTTPHASLAALDCFAGRRVALLVGGHDRGLDWTDFAAHMAQRAPLEIVTMG-ANGPRIHALLA 392 (468)
T ss_pred cEEEEccCCeEEEEeCCCCCHHHHHHHHHhccCCcEEEEEcCCCCCCCHHHHHHHHHhccCeEEEEeC-CCHHHHHHHHH
Confidence 999853 3455665 4999999999 877641 1223577777633 333 3 6788877 56667644444
Q ss_pred HHHhhcCCCCcEEEeCCHHHHHHHHhh-cCCCCCcEEEE
Q psy1839 243 TVASALSQRSKVVEFSSVLDTYNFKYG-LDPSKEYHILV 280 (304)
Q Consensus 243 ~~~~g~~~~~~~~~~~dr~~AI~~a~~-~a~~~~d~Vlv 280 (304)
+..... ...+..++|.++|++.|.+ .++ ++|+||.
T Consensus 393 ~~~~~~--~~~~~~~~~~~~Av~~A~~~~~~-~gdvVLl 428 (468)
T PRK04690 393 PLAAAG--RFGLHAADDLAHAVRLARTALGA-QGGVVLL 428 (468)
T ss_pred hccccc--CCceEEcCCHHHHHHHHHHHhCC-CCCEEEe
Confidence 322111 1235667899999999998 564 8999987
No 32
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.78 E-value=2.4e-18 Score=171.28 Aligned_cols=210 Identities=12% Similarity=0.045 Sum_probs=133.8
Q ss_pred hCCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHHH
Q psy1839 67 KEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLET 146 (304)
Q Consensus 67 ~~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~~ 146 (304)
..+.+++|+|+|+.. ++.+..+ +|+++|||||+.||+++|| |+|+|+.+|++||+ ++++|+|. ||+.+..+...
T Consensus 161 ~~~~~~~VlE~ss~q-l~~~~~~-~P~vaVITNI~~DHLd~~g-t~e~ya~aK~~I~~-~~~~Vln~-dd~~~~~~~~~- 234 (488)
T PRK03369 161 DEPAELLAVELSSFQ-LHWAPSL-RPEAGAVLNIAEDHLDWHG-TMAAYAAAKARALT-GRVAVVGL-DDSRAAALLDT- 234 (488)
T ss_pred cCCCCEEEEECChHH-hCccccc-CCCEEEEcCCCHHHhhhcC-CHHHHHHHHHHHhc-CCEEEEEC-CCHHHHHHHHh-
Confidence 468899999999753 3334444 4999999999999999999 99999999999998 47899999 88877554432
Q ss_pred HHhhCCeEEEe--CC--------------------C------cccccCCC----------------c---------c--c
Q psy1839 147 SRALNCVLLEA--PS--------------------I------LNYRWRGQ----------------P---------L--D 171 (304)
Q Consensus 147 a~~~~~~~~~~--~~--------------------~------~~~~~~~~----------------~---------l--~ 171 (304)
++.. ..+.+ +. . ..++..+. + + .
T Consensus 235 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAla~a~~lGi~~e~i~~~L~~f 312 (488)
T PRK03369 235 APAP--VRVGFRLGEPAAGELGVRDGHLVDRAFADDLRLAPVASIPVPGPVGVLDALAAAALARAVGVPAGAIADALASF 312 (488)
T ss_pred CCCc--EEEEEeCCCCCcCCceEECCEEEEeccCCccceechhhcCCCcHhHHHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 1110 11111 00 0 00000000 0 0 1
Q ss_pred ccccCceeeeeC-CceeccC--CCCCCCcccc-cccCCC----CCCCCCCchhHH---hcCC-CCeEEEecCCCCcchHH
Q psy1839 172 EDWKNRFGVKLD-SRTAAPN--GGHEPGRPNV-GQGGGG----FQSRSGDNSIRS---NANP-LSSVDCHNVNDQSNSFH 239 (304)
Q Consensus 172 ~~~~GR~e~~~~-~~~v~vD--~AHnp~al~~-l~~l~~----~~~~~~d~~~r~---~~~~-~d~vi~T~~~dnpr~~~ 239 (304)
...|||||++.. +..++|| |||||+|+++ |++++. ++|.++++|... .+.+ .+.+++.+ ++.++..+
T Consensus 313 ~~~~gR~E~v~~~~gv~iIDDS~AhNp~s~~aal~~~~~iilI~GG~~k~~d~~~l~~~l~~~~~~vi~iG-~~~~~i~~ 391 (488)
T PRK03369 313 RVGRHRAEVVAVADGITYVDDSKATNPHAARASILAYPRVVWIAGGLLKGASVDALVAEMASRLVGAVLIG-RDRAVVAE 391 (488)
T ss_pred CCCCCccEEEEcCCCEEEEECCCCCCHHHHHHHHHhCCCeEEEecCcCCCCCHHHHHHHHhhheeEEEEEc-CCHHHHHH
Confidence 345999999742 3456777 9999999999 988753 345678888863 3444 67888886 32222233
Q ss_pred HHHHHHhhcC------------------CCCcEEEeC----------CHHHHHHHHhhcCCCCCcEEEE---ecchhh
Q psy1839 240 KIATVASALS------------------QRSKVVEFS----------SVLDTYNFKYGLDPSKEYHILV---TGSLHL 286 (304)
Q Consensus 240 ii~~~~~g~~------------------~~~~~~~~~----------dr~~AI~~a~~~a~~~~d~Vlv---aGSl~l 286 (304)
.+.+...+.. +...++..+ +.++|++.|.+.++ ++|+||. |.|+-|
T Consensus 392 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~av~~a~~~a~-~gd~vLlSPacaSfd~ 468 (488)
T PRK03369 392 ALSRHAPDVPVVQVVTGEDAGMPATPEVPVACVTDVADDDGETLGDAVMAAAVAAARRLAR-PGDTVLLAPAGASFDQ 468 (488)
T ss_pred HHHhcCCCCCEEEeccccccccccccccccccccccccccccccchhhHHHHHHHHHHhCC-CCCEEEeChhhccccc
Confidence 3332111110 001111122 59999999999996 9999997 445443
No 33
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.78 E-value=4e-18 Score=167.22 Aligned_cols=198 Identities=12% Similarity=0.064 Sum_probs=134.6
Q ss_pred HhCCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHH
Q psy1839 66 VKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLE 145 (304)
Q Consensus 66 ~~~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~ 145 (304)
...+.+++|+|+|+.+ ++.++.+. |+++|||||+.||+++||+|+|+|+.+|++|++..+.+|+|. ||+.+..+...
T Consensus 148 ~~~~~~~~V~E~ss~~-l~~~~~~~-p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~~~~~v~n~-dd~~~~~~~~~ 224 (438)
T PRK03806 148 LDQECELYVLELSSFQ-LETTSSLK-AAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNA-DDALTMPIRGA 224 (438)
T ss_pred hccCCCEEEEEccchh-hccCcccC-CCEEEEecCcHHHhccccCCHHHHHHHHHHHHhCCCeEEEeC-CCHHHHHHhcC
Confidence 3567899999999864 35678774 999999999999999996699999999999999888899999 88877553211
Q ss_pred HHHhhCCeEEEeCCC-c------------------------ccccCCC-------------------------cc--ccc
Q psy1839 146 TSRALNCVLLEAPSI-L------------------------NYRWRGQ-------------------------PL--DED 173 (304)
Q Consensus 146 ~a~~~~~~~~~~~~~-~------------------------~~~~~~~-------------------------~l--~~~ 173 (304)
..++.+++.. . .++..+. .+ ..+
T Consensus 225 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~lgi~~~~i~~~L~~f~~ 299 (438)
T PRK03806 225 -----DKRCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNTKEMKLSGQHNYTNALAALALADAVGIPRASSLKALTTFTG 299 (438)
T ss_pred -----CceEEEEecCCCceEEEecCCeEEEEecCceeeehhhcCCcccccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 1222223210 0 0000000 11 147
Q ss_pred ccCceeeee--CCceeccC-CCCCCCcccc-cccCCC-------CCCCCCCchhH---HhcCC-CCeEEEecCCCCcchH
Q psy1839 174 WKNRFGVKL--DSRTAAPN-GGHEPGRPNV-GQGGGG-------FQSRSGDNSIR---SNANP-LSSVDCHNVNDQSNSF 238 (304)
Q Consensus 174 ~~GR~e~~~--~~~~v~vD-~AHnp~al~~-l~~l~~-------~~~~~~d~~~r---~~~~~-~d~vi~T~~~dnpr~~ 238 (304)
|+||||++. ++..++.| |+|||+|+++ +++++. +++.+++.+.. +.+.. ...+++++ + ..
T Consensus 300 ~~gR~E~v~~~~~~~~i~Ds~a~n~~a~~~al~~l~~~~~~i~IlG~~~k~~d~~~l~~~l~~~~~~v~~~g-~----~~ 374 (438)
T PRK03806 300 LPHRFQLVLEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARYLNGDNIRLYCFG-R----DG 374 (438)
T ss_pred CCCeEEEEEeeCCEEEEEcCCCCCHHHHHHHHHhCccCCcEEEEECCcCCCCCHHHHHHHHHhhCcEEEEEC-C----CH
Confidence 999999974 34556666 8999999999 998852 12223344433 33333 34677776 2 23
Q ss_pred HHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEec
Q psy1839 239 HKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTG 282 (304)
Q Consensus 239 ~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaG 282 (304)
+.+++.+.+ .+..+++.++|++.+.+.++ ++|+||+..
T Consensus 375 ~~l~~~~~~-----~~~~~~~~~~av~~a~~~~~-~gd~VLlsp 412 (438)
T PRK03806 375 AQLAALRPE-----VSQLTETMEQAMRLIAPRVQ-PGDMVLLSP 412 (438)
T ss_pred HHHHHHhhc-----ceEecCCHHHHHHHHHHhCC-CCCEEEECh
Confidence 445554322 14567899999999999885 889999874
No 34
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=99.77 E-value=4.5e-18 Score=167.49 Aligned_cols=208 Identities=12% Similarity=0.100 Sum_probs=137.8
Q ss_pred CCEEEEeecC-CCccccccccCCCcEEEEcccchhhhh-ccCCCHHHHHHHHhccccC---CceEEecCCCCCchHHHHH
Q psy1839 70 PDAVIMEVGI-GGRYDNTNIIPNTAVVGITSLGYDHTA-VLGNTIEEITMQKAGIMKP---NCIAVTSANQRGPCKQILL 144 (304)
Q Consensus 70 vd~aVlE~Gl-gGr~d~tn~~~~~~vaviTnIg~DHl~-~lG~Tle~Ia~~Ka~I~~~---~~~~V~~~~dd~~~~~~l~ 144 (304)
.|++|+|++. ++.. ..+ +|+++|||||+.||++ +++ |+|+|+.+|.+|++. ++.+|+|. ||+.+..+..
T Consensus 148 ~~~~V~E~s~~q~~~---~~~-~p~vaVitNI~~DHld~~~~-s~e~y~~aK~~i~~~~~~~~~~V~n~-dd~~~~~~~~ 221 (448)
T TIGR01082 148 GEYLVAEADESDASF---LHL-QPNVAIVTNIEPDHLDTYGS-SFERLKAAFEKFIHNLPFYGLAVICA-DDPVLRELVP 221 (448)
T ss_pred CCEEEEECCCccchH---hhc-cCCEEEEecCChhhcchhcC-CHHHHHHHHHHHHHhCCCCCEEEEEC-CCHHHHHHHh
Confidence 5899999986 3322 223 4899999999999999 766 999999999999963 67899999 8887765542
Q ss_pred HHHHhhCCeEEEeCCC---cc----------------------------cccCC------------------C-------
Q psy1839 145 ETSRALNCVLLEAPSI---LN----------------------------YRWRG------------------Q------- 168 (304)
Q Consensus 145 ~~a~~~~~~~~~~~~~---~~----------------------------~~~~~------------------~------- 168 (304)
. + ...+.+|+.. .+ ++..+ .
T Consensus 222 ~-~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~G~hn~~N~~aA~a~~~~lgi~~~~i~~ 297 (448)
T TIGR01082 222 K-A---TEQVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGKLYLEFTLNLPGRHNVLNALAAIAVALELGIDFEAILR 297 (448)
T ss_pred h-c---CCCEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEecCccHhHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 1 1 1122222110 00 00000 0
Q ss_pred cc--cccccCceeeee--CCceeccCCCCCCCcccc-cccCCCC-C-CC----------CCCchh-H---HhcCCCCeEE
Q psy1839 169 PL--DEDWKNRFGVKL--DSRTAAPNGGHEPGRPNV-GQGGGGF-Q-SR----------SGDNSI-R---SNANPLSSVD 227 (304)
Q Consensus 169 ~l--~~~~~GR~e~~~--~~~~v~vD~AHnp~al~~-l~~l~~~-~-~~----------~~d~~~-r---~~~~~~d~vi 227 (304)
.+ ...+++|||.+. ++..++.||||||+++++ +++|+.+ + ++ +++++. . +.+..+|.++
T Consensus 298 ~l~~f~~~~~R~e~~~~~~gv~~i~D~ahn~~~~~a~~~al~~~~~~~~ii~i~g~~~~~r~k~~~~~~~~~l~~~d~v~ 377 (448)
T TIGR01082 298 ALANFQGVKRRFEILGEFGGVLLIDDYAHHPTEIKATLKAARQGYPDKRIVVVFQPHRYSRTRDLFDDFAKVLSDADELI 377 (448)
T ss_pred HHHhCCCCCccceEEEEeCCeEEEEcCCCCHHHHHHHHHHHHHhcCCCeEEEEECCCCCccHHHHHHHHHHHHHhCCEEE
Confidence 00 135789999973 356899999999999999 8888653 2 22 333332 2 2222389999
Q ss_pred EecCCCC---c-ch--HHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhhHHH
Q psy1839 228 CHNVNDQ---S-NS--FHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGA 289 (304)
Q Consensus 228 ~T~~~dn---p-r~--~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~lv~~ 289 (304)
+|.+.+. | |. .+.+.+.+.+.. ...+..++|.++|+++|.+.++ ++|+||++|+=..-+-
T Consensus 378 l~~~~~~~~~~~~g~~~~~i~~~~~~~~-~~~~~~~~~~~~a~~~a~~~a~-~gD~VLl~G~g~~~~~ 443 (448)
T TIGR01082 378 LLDIYAAGEEPINGIDGKSLARKITQLG-KIEPYFVPDLAELVEFLAAVLQ-SGDLILTMGAGDIIKL 443 (448)
T ss_pred EecccCCCCCCCCCCCHHHHHHHHhhcC-CCceEEeCCHHHHHHHHHHhcC-CCCEEEEECCCCHHHH
Confidence 9974221 2 23 455555554311 1235668999999999999996 9999999998765543
No 35
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.74 E-value=3.3e-17 Score=161.93 Aligned_cols=200 Identities=13% Similarity=0.053 Sum_probs=133.6
Q ss_pred CCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhcccc---CCceEEecCCCCCchHHHHH
Q psy1839 68 EKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCKQILL 144 (304)
Q Consensus 68 ~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~---~~~~~V~~~~dd~~~~~~l~ 144 (304)
.+.|++|+|+|+....+. .+ +|+++|||||+.||+++|| |+|+|+.+|+.|++ +++.+|+|. ||+.+..+..
T Consensus 164 ~~~~~~VlE~~~~~~~~~-~~--~PdiaViTNI~~dHld~~~-s~e~~~~aK~~i~~~~~~~~~~v~n~-Dd~~~~~~~~ 238 (458)
T PRK01710 164 KEEDKVVLELSSFQLMTM-DV--SPEVAVVTNLSPNHLDVHK-DMEEYIDAKKNIFKYQSENDLLVLNK-DNEITNGMEK 238 (458)
T ss_pred CCCCEEEEEcCccccccC-CC--CCCEEEEecCChhhccccC-CHHHHHHHHHHHHhcCCCCCEEEEeC-CcHHHHHHHh
Confidence 368999999999655443 22 5999999999999999999 89999999999995 467899999 8887654432
Q ss_pred HHHHhhCCeEEEeCCCc-----c-----------------c--ccCCC------------------------cc--cccc
Q psy1839 145 ETSRALNCVLLEAPSIL-----N-----------------Y--RWRGQ------------------------PL--DEDW 174 (304)
Q Consensus 145 ~~a~~~~~~~~~~~~~~-----~-----------------~--~~~~~------------------------~l--~~~~ 174 (304)
. ...++++|+... . + +..+. .+ ..+.
T Consensus 239 ~----~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaA~a~a~~~i~~~~i~~~L~~f~~~ 314 (458)
T PRK01710 239 E----AKGDVVKFSRKEKVYEGAYLKNGKLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVNDDVSIESMKKVATTFSGV 314 (458)
T ss_pred h----cCCcEEEEeCCCCCCCceEEeCCEEEEcCceEEEhhhcCCccHhHHHHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 1 122344443210 0 0 00000 01 1479
Q ss_pred cCceeeee--CCceeccC-CCCCCCcccc-cccCCC-----CCCCCCCchhHHhc---CC-CCeEEEecCCCCcchHHHH
Q psy1839 175 KNRFGVKL--DSRTAAPN-GGHEPGRPNV-GQGGGG-----FQSRSGDNSIRSNA---NP-LSSVDCHNVNDQSNSFHKI 241 (304)
Q Consensus 175 ~GR~e~~~--~~~~v~vD-~AHnp~al~~-l~~l~~-----~~~~~~d~~~r~~~---~~-~d~vi~T~~~dnpr~~~ii 241 (304)
+||||.+. ++..++.| |+|||+++.+ |+++.. ++|..++.+.+++. .. .|.||+++ + . .+.+
T Consensus 315 ~~R~e~~~~~~g~~~i~Dsy~~np~s~~~al~~~~~~~i~IlGg~~~~~~~~~l~~~~~~~~~~vi~~G-~-~---~~~~ 389 (458)
T PRK01710 315 EHRCEFVREINGVKYYNDSIASSPTRTLAGLKAFEKPVILIAGGYDKKIPFEPLAEEGYEKIKTLILMG-A-T---KNKI 389 (458)
T ss_pred CcceEEEEEECCEEEecccccCCHHHHHHHHHhCCCCEEEEeCCcCCCCCHHHHHHHHHhhccEEEEEC-C-C---HHHH
Confidence 99999873 56666666 9999999999 988852 12334444444322 24 79999998 3 2 2223
Q ss_pred HHHHhh----cCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEec
Q psy1839 242 ATVASA----LSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTG 282 (304)
Q Consensus 242 ~~~~~g----~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaG 282 (304)
++.+.. ......+..+.|.++|++.+.+.++ ++|+||++.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~gd~VLlsp 433 (458)
T PRK01710 390 KEAFEKVISEKGIDIPIVIVNSLEEAVKVAKEIAE-KGDIVTLSP 433 (458)
T ss_pred HHHHhhcccccCCCcceEEcCCHHHHHHHHHHhCC-CCCEEEeCh
Confidence 332211 1111235667999999999999996 999999965
No 36
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.73 E-value=2.1e-17 Score=163.24 Aligned_cols=206 Identities=11% Similarity=0.119 Sum_probs=134.8
Q ss_pred CCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhcccc---CCceEEecCCCCCchHHHHH
Q psy1839 68 EKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCKQILL 144 (304)
Q Consensus 68 ~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~---~~~~~V~~~~dd~~~~~~l~ 144 (304)
.+.+++|+|+|+... +-+..+ +|+++|||||+.||+|+|| |+|+|+.+|+.||+ +++.+|+|. ||+.+..+..
T Consensus 148 ~~~~~~VlE~ss~ql-~~~~~~-~P~iavitNI~~DHLd~~~-s~e~y~~aK~~i~~~~~~~~~~Vln~-Dd~~~~~~~~ 223 (454)
T PRK01368 148 ASKDGYVLELSSFQL-DLVKTF-TAKIAVLLNITPDHLDRHQ-DMDGYIAAKSKIFDRMDKDSYAVINI-DNDYCREIFI 223 (454)
T ss_pred CCCCEEEEEcCchhh-cccccc-CCCEEEEecCChhHhhccC-CHHHHHHHHHHHHhcCCCCCEEEEeC-CcHHHHHHHH
Confidence 456999999998432 334434 4999999999999999999 89999999999995 357899999 8887765543
Q ss_pred HHHHhhCCeEEEeCCCc-------------------------ccc--cCCC-------------------------cc--
Q psy1839 145 ETSRALNCVLLEAPSIL-------------------------NYR--WRGQ-------------------------PL-- 170 (304)
Q Consensus 145 ~~a~~~~~~~~~~~~~~-------------------------~~~--~~~~-------------------------~l-- 170 (304)
......++++++|+... .+. ..+. .+
T Consensus 224 ~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAia~~~~lgi~~~~i~~~L~~ 303 (454)
T PRK01368 224 KLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAKIIGVEPKKILESISS 303 (454)
T ss_pred HhhcccCceEEEEeCCcccCCCcEEECCEEEEEecCCcceEEEecCCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 32111122333332100 000 0000 11
Q ss_pred cccccCceeeee--CCceeccC-CCCCCCcccc-cccCCC----CCCCCCCchhHHhcC---CCCeEEEecCCCCcchHH
Q psy1839 171 DEDWKNRFGVKL--DSRTAAPN-GGHEPGRPNV-GQGGGG----FQSRSGDNSIRSNAN---PLSSVDCHNVNDQSNSFH 239 (304)
Q Consensus 171 ~~~~~GR~e~~~--~~~~v~vD-~AHnp~al~~-l~~l~~----~~~~~~d~~~r~~~~---~~d~vi~T~~~dnpr~~~ 239 (304)
..+||||||++. ++..++.| +||||+|+++ |++++. ++|.++..+.+..+. ..-.+++.+ ..++
T Consensus 304 F~~~~~Rle~v~~~~gv~~i~DS~atN~~a~~~al~~~~~i~lI~Gg~dk~~~~~~L~~~~~~v~~v~~~g-----~~~~ 378 (454)
T PRK01368 304 FQSLPHRMQYIGSINNISFYNDSKATNAISAVQSIKALDNIYWLAGGIPKEGGIEEIKPYFSKIKKAYFYG-----QAKE 378 (454)
T ss_pred CCCCCcceEEEEEECCeEEEECCCCCCHHHHHHHHHhcCCeEEEecccCCCCCHHHHHHHHHhhcEEEEEC-----cCHH
Confidence 158999999974 45668889 9999999999 998864 223344444443222 222334433 1256
Q ss_pred HHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCC----cEEEE---ecchhh
Q psy1839 240 KIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKE----YHILV---TGSLHL 286 (304)
Q Consensus 240 ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~----d~Vlv---aGSl~l 286 (304)
.|++.+... ..+..+++.++|++.|.+.++ ++ |+||. |.|+-|
T Consensus 379 ~l~~~~~~~---~~~~~~~~l~~Av~~a~~~a~-~g~~~~d~VLlSPacaSfD~ 428 (454)
T PRK01368 379 IFANTAKNI---VDFVICDNLEQAFDLAYKDAV-GDNAEVKNILLAPSCSSYDQ 428 (454)
T ss_pred HHHHHhhcC---CCEEEcCCHHHHHHHHHHHhc-CCCCCCCEEEeChhhhcccc
Confidence 666665432 235667899999999999996 77 79987 455443
No 37
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.73 E-value=1.5e-17 Score=174.75 Aligned_cols=220 Identities=14% Similarity=0.076 Sum_probs=133.7
Q ss_pred CCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhcccc---CCceEEecCCCCCchHHHHHH
Q psy1839 69 KPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLE 145 (304)
Q Consensus 69 ~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~---~~~~~V~~~~dd~~~~~~l~~ 145 (304)
+.|++|+|+|..- .+ ...+ +|+++|||||+.||+++++.|+|+|+.+|..+++ +++.+|+|. ||+........
T Consensus 151 ~~d~~V~E~ss~~-~~-~~~~-~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~V~N~-Dd~~~~~~~~~ 226 (809)
T PRK14573 151 SSEYFVAEADESD-GS-LKHY-TPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKCFYNG-DCPRLKGCLQG 226 (809)
T ss_pred CCCEEEEECCCCc-ch-hhee-ecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEEEEeC-CCHHHHhhccc
Confidence 4699999999741 12 2233 4999999999999999883389999999988874 357789999 88755332110
Q ss_pred HH--HhhCCeE----EE-------e-----CCC-c--ccccCC------------------C-------cc--cccccCc
Q psy1839 146 TS--RALNCVL----LE-------A-----PSI-L--NYRWRG------------------Q-------PL--DEDWKNR 177 (304)
Q Consensus 146 ~a--~~~~~~~----~~-------~-----~~~-~--~~~~~~------------------~-------~l--~~~~~GR 177 (304)
.. -...+.+ +. + +.. . .++..+ . ++ ..+|+||
T Consensus 227 ~~~g~~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~lgi~~~~i~~~L~~f~~~~~R 306 (809)
T PRK14573 227 HSYGFSSSCDLHILSYYQEGWRSYFSAKFLGVVYQDIELNLVGMHNVANAAAAMGIALTLGIDEGAIRNALKGFSGVQRR 306 (809)
T ss_pred EEEccCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEeccccHhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCC
Confidence 00 0000110 00 0 000 0 000000 0 11 1469999
Q ss_pred eeeee--CCceeccCCCCCCCcccc-cccCCC-CC-CC-------CCCchhHHhc------CC-CCeEEEecCCC---Cc
Q psy1839 178 FGVKL--DSRTAAPNGGHEPGRPNV-GQGGGG-FQ-SR-------SGDNSIRSNA------NP-LSSVDCHNVND---QS 235 (304)
Q Consensus 178 ~e~~~--~~~~v~vD~AHnp~al~~-l~~l~~-~~-~~-------~~d~~~r~~~------~~-~d~vi~T~~~d---np 235 (304)
||++. +++.++.||||||+++++ +++++. ++ +| .+++..+..+ -+ +|.+++|.++. .|
T Consensus 307 ~e~~~~~~~~~~i~D~ahnP~~~~a~l~~l~~~~~~~rli~vf~~~~~~~~~~~~~~~~~~l~~~d~vilt~~~~~~e~~ 386 (809)
T PRK14573 307 LERKNSSETFLFLEDYAHHPSEISCTLRAVRDAVGLRRIIAICQPHRFSRLRECLDSFPSAFQDADEVILTDVYSAGEEP 386 (809)
T ss_pred CEEEeccCCcEEEEECCCCHHHHHHHHHHHHhhcCCCEEEEEEcCCcchhHHHHHHHHHHHHHHCCEEEECCccCCCCCC
Confidence 99974 346799999999999999 998865 33 33 2333333222 12 89999998432 14
Q ss_pred c-h--HHHHHHHHhhcCCCC-cEEEeCCHHHHHHHHhhcCCCCCcE--EEEecchhhHHHHHHHhcC
Q psy1839 236 N-S--FHKIATVASALSQRS-KVVEFSSVLDTYNFKYGLDPSKEYH--ILVTGSLHLVGAFLNVLSN 296 (304)
Q Consensus 236 r-~--~~ii~~~~~g~~~~~-~~~~~~dr~~AI~~a~~~a~~~~d~--VlvaGSl~lv~~~~~~l~~ 296 (304)
| . ++.+++.+....... .+...++..+|+..+. + +.|+ +++|||+|++|.++..|+-
T Consensus 387 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~al~~~~---~-~~d~~~il~~GSly~i~~~~~~~~~ 449 (809)
T PRK14573 387 EDSISYQKLAEAISQSSIVKCTYVPFHEIQRYLEQSI---R-VHDVCVSLGAGNIYTLGEALKDFEP 449 (809)
T ss_pred CCCCCHHHHHHHHhhcCCCceeecCHHHHHHHHHHhc---C-CCCEEEEECCCCHHHHHHHHHhcCC
Confidence 4 3 666777664211101 1222345555554443 2 3455 8999999999999988764
No 38
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.62 E-value=5.7e-15 Score=145.18 Aligned_cols=199 Identities=13% Similarity=0.073 Sum_probs=126.4
Q ss_pred hCCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHHH
Q psy1839 67 KEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLET 146 (304)
Q Consensus 67 ~~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~~ 146 (304)
..+.+++|+|+|+.+. +.+..+ +|+++|||||+.||+|+|| |+|+|+.+|.+||+..+.+|+|. ||+.......
T Consensus 152 ~~~~~~~V~E~ss~~l-~~~~~~-~p~iavitNi~~dHld~~g-s~e~y~~aK~~i~~~~~~~v~n~-dd~~~~~~~~-- 225 (438)
T PRK04663 152 EQDAELYVLELSSFQL-ETTSSL-KLKAAAFLNLSEDHMDRYQ-GMEDYRQAKLRIFDHAELAVVNR-DDKQTYPDHA-- 225 (438)
T ss_pred cCCCCEEEEEcChhhh-ccCccc-CCCEEEEecCChhhCcccC-CHHHHHHHHHHHHhCCCEEEEeC-CCHHHHhhhc--
Confidence 5578999999998653 234444 4899999999999999999 89999999999998667899999 8876532211
Q ss_pred HHhhCCeEEEeCCCc-------------------------ccccCCC-------------------------cc--cccc
Q psy1839 147 SRALNCVLLEAPSIL-------------------------NYRWRGQ-------------------------PL--DEDW 174 (304)
Q Consensus 147 a~~~~~~~~~~~~~~-------------------------~~~~~~~-------------------------~l--~~~~ 174 (304)
..++++|+... .++..+. .+ ..++
T Consensus 226 ----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~lGi~~~~i~~~L~~f~g~ 301 (438)
T PRK04663 226 ----ELQLVTFGFDQQDFGLAQHQGREWLADNGQPVLASAELKLVGRHNVANVLVVLALLDAAGVDYRKALDALKSYTGL 301 (438)
T ss_pred ----CCcEEEEecCCCCCCeEecCCeEEEEeCCceeeehhhcCCcchhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 12233332110 0000000 01 1579
Q ss_pred cCceeeeeC-CceeccC--CCCCCCcccc-cccCCC-------CCC--CCCCchh-HHhcCC-CCeEEEecCCCCcchHH
Q psy1839 175 KNRFGVKLD-SRTAAPN--GGHEPGRPNV-GQGGGG-------FQS--RSGDNSI-RSNANP-LSSVDCHNVNDQSNSFH 239 (304)
Q Consensus 175 ~GR~e~~~~-~~~v~vD--~AHnp~al~~-l~~l~~-------~~~--~~~d~~~-r~~~~~-~d~vi~T~~~dnpr~~~ 239 (304)
++|||++.. +...+|| |++||+|+.+ |+++.. +++ +++|.+. .+.+.. .+.|++++ ++. .+
T Consensus 302 ~~R~e~v~~~~g~~~idDs~~tn~~s~~~Al~~~~~~~~~i~IlGg~~~~~~~~~l~~~~~~~~~~vi~~G-~~~---~~ 377 (438)
T PRK04663 302 THRCQVVADNHGIKWVNDSKATNVASTLAALSGLEIEGKLYLLVGGVGKGADFSPLKPVLATLNLQLCCFG-EDG---DQ 377 (438)
T ss_pred CCceEEeeeeCCcEEEeCCCcCCHHHHHHHHHhcccCCcEEEEECCccCCCCHHHHHHHHHhhCcEEEEEC-CCH---HH
Confidence 999999742 2344566 5668999998 887741 121 1222221 122333 34788887 321 22
Q ss_pred HHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEe-c--chhhH
Q psy1839 240 KIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVT-G--SLHLV 287 (304)
Q Consensus 240 ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~Vlva-G--Sl~lv 287 (304)
+.+... .+..+.|.++|++.+.+.++ ++|+||+. | |+.+.
T Consensus 378 -~~~~~~------~~~~~~~~e~av~~~~~~~~-~gd~VLlsp~~as~d~f 420 (438)
T PRK04663 378 -FMPLHP------SARRFDTMEDAIESISPQLK-SGDMVMLSPACASFDQF 420 (438)
T ss_pred -HHHHhc------cCeecCCHHHHHHHHHHhCC-CCCEEEECcccccccCc
Confidence 222211 13456899999999998885 89999987 5 66554
No 39
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=2.2e-13 Score=133.34 Aligned_cols=198 Identities=14% Similarity=0.105 Sum_probs=132.4
Q ss_pred hCCCCEEEEeecC-CCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCc-eEEecCCCCCchHHHHH
Q psy1839 67 KEKPDAVIMEVGI-GGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNC-IAVTSANQRGPCKQILL 144 (304)
Q Consensus 67 ~~~vd~aVlE~Gl-gGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~-~~V~~~~dd~~~~~~l~ 144 (304)
..+.|+.|+|+++ | ++.+.-+ +|.+++||||+.||+|||| |||+|..+|+.|+...+ .+|+|. ||+++..+..
T Consensus 156 ~~~~d~~VlElSSfQ--L~~~~~~-~P~iavilNi~~DHLD~H~-s~e~Y~~aK~~i~~~~~~~~Vin~-dd~~~~~~~~ 230 (448)
T COG0771 156 AEPADVYVLELSSFQ--LETTSSL-RPEIAVILNISEDHLDRHG-SMENYAAAKLRILEGQTEVAVINA-DDAYLKTLAD 230 (448)
T ss_pred cCCCCEEEEEccccc--cccCccC-CccEEEEecCCHHHhhhcc-CHHHHHHHHHHHHcCCccEEEEeC-CcHHHhhhhh
Confidence 3578999999986 5 3334333 4999999999999999999 89999999999998666 899999 8887755443
Q ss_pred HHHHhhCCeEEEe--CCCc---------cc-------------ccCCC----------------c-----------cccc
Q psy1839 145 ETSRALNCVLLEA--PSIL---------NY-------------RWRGQ----------------P-----------LDED 173 (304)
Q Consensus 145 ~~a~~~~~~~~~~--~~~~---------~~-------------~~~~~----------------~-----------l~~~ 173 (304)
.. ....+.++ +... .. +..+. + ...+
T Consensus 231 ~~---~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~gv~~e~i~~~L~~F~g 307 (448)
T COG0771 231 EA---TKARVIWFSFGEPLADGDYIYDGKLVFKGEKLLPADELKLPGAHNLENALAALALARALGVPPEAILEALSSFTG 307 (448)
T ss_pred hc---ccceeEEEEccccccccceeecchhccccccccchhhcCCcchhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 32 11222222 2110 00 00000 0 1258
Q ss_pred ccCceeeee-CCceeccC--CCCCCCcccc-cccCC-C----CCCCCCCchhH---HhcCC-CCeEEEecCCCCcchHHH
Q psy1839 174 WKNRFGVKL-DSRTAAPN--GGHEPGRPNV-GQGGG-G----FQSRSGDNSIR---SNANP-LSSVDCHNVNDQSNSFHK 240 (304)
Q Consensus 174 ~~GR~e~~~-~~~~v~vD--~AHnp~al~~-l~~l~-~----~~~~~~d~~~r---~~~~~-~d~vi~T~~~dnpr~~~i 240 (304)
.+.|||.+. .+...++| -|-||+|..+ |.+++ . .+|.++.-+.- +.+.+ .-.+++.+ . ....
T Consensus 308 l~HR~e~v~~~~gv~f~NDSKATN~~At~~AL~~~~~~v~lI~GG~~Kg~df~~L~~~~~~~~~~~~~~G-~----~~~~ 382 (448)
T COG0771 308 LPHRLEFVGEKDGVLFINDSKATNVDATLAALSGFDGPVILIAGGDDKGADFSPLAEILAKVIKKLVLIG-E----DAEK 382 (448)
T ss_pred CCcceEEEEecCCEEEecCCCCCCHHHHHHHHHcCCCCEEEEECCCCCCCChhHHHHHhhhcceEEEEeC-C----CHHH
Confidence 999999984 33455555 5677998888 88776 2 12323333332 55555 44577877 2 3556
Q ss_pred HHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEE
Q psy1839 241 IATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILV 280 (304)
Q Consensus 241 i~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~Vlv 280 (304)
+++.+...... +....+.++|++.|...++ ++|+||.
T Consensus 383 i~~~l~~~~~~--~~~~~~le~Av~~a~~~a~-~gd~VLL 419 (448)
T COG0771 383 IAAALKEAGPS--LVICETLEEAVQLARELAQ-PGDVVLL 419 (448)
T ss_pred HHHHHHhcCCc--eeecCcHHHHHHHHHHhhc-CCCeEEE
Confidence 66666554332 5667899999999999996 9999886
No 40
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.52 E-value=8.1e-14 Score=136.25 Aligned_cols=206 Identities=12% Similarity=-0.008 Sum_probs=119.4
Q ss_pred CCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccC---CceEEecC----CCCCc--h
Q psy1839 69 KPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIAVTSA----NQRGP--C 139 (304)
Q Consensus 69 ~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~---~~~~V~~~----~dd~~--~ 139 (304)
+.+++|+|+|+.+..+.-....+|+++|||||+.||+++|| |+|+|+.+|+.||.. ........ ..+.. .
T Consensus 147 ~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~-s~e~y~~aK~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (418)
T PRK00683 147 QPGVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHG-NLSAYFQAKQNIAKCLRNPDDLWVGDERSYGHSYLEYV 225 (418)
T ss_pred cCCEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCC-CHHHHHHHHHHHHHhhhCcccccccccCCcCceeecCc
Confidence 47999999999654433223323489999999999999999 899999999999952 11100000 00000 0
Q ss_pred HHHHHHHHHhhCCeEEEeCCCc--c-------ccc-CCC-------cc--cccccCceeeee--CCceeccC-CCCCCCc
Q psy1839 140 KQILLETSRALNCVLLEAPSIL--N-------YRW-RGQ-------PL--DEDWKNRFGVKL--DSRTAAPN-GGHEPGR 197 (304)
Q Consensus 140 ~~~l~~~a~~~~~~~~~~~~~~--~-------~~~-~~~-------~l--~~~~~GR~e~~~--~~~~v~vD-~AHnp~a 197 (304)
..+. .... .+..+...+... + ... -+. ++ ...|+||||++. ++..++-| |++||++
T Consensus 226 ~~~~-~~~~-~~~~~~~~g~hn~~Na~aA~a~~~~l~g~~~~~i~~~l~~~~~~~~R~e~v~~~~g~~~i~Ds~~t~~~s 303 (418)
T PRK00683 226 QEIM-RLLD-KGSALKPLYLHDRYNYCAAYALANEVFPISEESFLEAVATFEKPPHRMEYLGEKDGVHYINDSKATTVSA 303 (418)
T ss_pred chhh-hhhc-cccccCCCccchHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCceEEEeecCCeEEEEcCCCCCHHH
Confidence 0000 0000 000000011100 0 000 010 11 157999999974 45556666 7888999
Q ss_pred ccc-cccCCC-----CCCCCCCchhH---HhcCC-CCeEEEecCCCCcchHHHHHHHHhhcCCCCcEEEeCCHHHHHHHH
Q psy1839 198 PNV-GQGGGG-----FQSRSGDNSIR---SNANP-LSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFK 267 (304)
Q Consensus 198 l~~-l~~l~~-----~~~~~~d~~~r---~~~~~-~d~vi~T~~~dnpr~~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a 267 (304)
+++ |+.++. +++++++++.. +.+.+ .|.|++|+ + + .+.+++.+... ..+..++|+++|++.+
T Consensus 304 ~~~al~~~~~~~i~vlG~~~~~~d~~~l~~~~~~~~~~v~~~G-~-~---~~~i~~~l~~~---~~~~~~~~~~~a~~~~ 375 (418)
T PRK00683 304 VEKALLAVGNQVIVILGGRNKGCDFSSLLPVLRQTAKHVVAMG-E-C---RQEIAQALSEK---FPLTVVKDLQEAVSCA 375 (418)
T ss_pred HHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHhCCEEEEEC-C-C---HHHHHHHHhcC---CCEEEeCCHHHHHHHH
Confidence 999 876531 22334455543 33335 79999997 2 1 22333333221 1356789999999999
Q ss_pred hhcCCCCCcEEEE---ecchhh
Q psy1839 268 YGLDPSKEYHILV---TGSLHL 286 (304)
Q Consensus 268 ~~~a~~~~d~Vlv---aGSl~l 286 (304)
.+.++ ++|+||+ |+|+-+
T Consensus 376 ~~~~~-~gd~VLlsp~~~s~d~ 396 (418)
T PRK00683 376 QEIAQ-PGDVILLSPGCASFDQ 396 (418)
T ss_pred HHhCC-CCCEEEECchhccccc
Confidence 99996 8899986 455543
No 41
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.50 E-value=2.4e-13 Score=132.49 Aligned_cols=195 Identities=9% Similarity=-0.021 Sum_probs=122.5
Q ss_pred hCCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhcccc---CCceEEecCCCCCchHHHH
Q psy1839 67 KEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCKQIL 143 (304)
Q Consensus 67 ~~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~---~~~~~V~~~~dd~~~~~~l 143 (304)
..+.+++|+|+|+-+ ++.++.+ +|+++|||||+.||++++| |+|+|+.+|..|++ +++.+|+|. ||+...
T Consensus 130 ~~~~~~~V~E~ss~~-~~~~~~~-~p~iavitNi~~dHld~~~-s~e~~~~~k~~i~~~~~~~~~~v~n~-dd~~~~--- 202 (401)
T PRK03815 130 DKNAKIWVLETSSFT-LHYTNKA-KPNIYLLLPITPDHLSWHG-SFENYVKAKLKPLKRMNEGDVAILPK-KFKNTP--- 202 (401)
T ss_pred CCCCCEEEEECChHH-hhCCccC-CCcEEEEcCCcccchhhcC-CHHHHHHHHHHHHhCCCcCCEEEEec-cccccc---
Confidence 456799999998754 3446666 4999999999999999999 89999999999985 467889999 777531
Q ss_pred HHHHHhhCCeEEEeCCCcc-------------ccc----C-----------C--C---cc--cccccCceeeee-CCcee
Q psy1839 144 LETSRALNCVLLEAPSILN-------------YRW----R-----------G--Q---PL--DEDWKNRFGVKL-DSRTA 187 (304)
Q Consensus 144 ~~~a~~~~~~~~~~~~~~~-------------~~~----~-----------~--~---~l--~~~~~GR~e~~~-~~~~v 187 (304)
..+++++|+...+ +.. | + . .+ ..+.++|||++. .+...
T Consensus 203 ------~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~NalaA~a~a~~~G~~~~~~~L~~f~~~~~R~e~~~~~~gv~ 276 (401)
T PRK03815 203 ------TKAQKIFYEDEEDLAEKFGIDSEKINFKGPFLLDALLALAVYKILFDELDYERLNAFKIGKHKLEEFRDKQGRL 276 (401)
T ss_pred ------cCCcEEEEecCCccccceeEehHhcCCchHHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCCceEEEEEEECCEE
Confidence 0123344432110 000 0 1 0 01 257899999973 23456
Q ss_pred ccCCCCC--CCcccc-cccCC--C----CCCCCCCchhH---HhcCCCC-eEEEecCCCCcchHHHHHHHHhhcCCCCcE
Q psy1839 188 APNGGHE--PGRPNV-GQGGG--G----FQSRSGDNSIR---SNANPLS-SVDCHNVNDQSNSFHKIATVASALSQRSKV 254 (304)
Q Consensus 188 ~vD~AHn--p~al~~-l~~l~--~----~~~~~~d~~~r---~~~~~~d-~vi~T~~~dnpr~~~ii~~~~~g~~~~~~~ 254 (304)
++|+.|+ |+|+.+ |+.+. . ++|+.+..+.. +.+...+ .|++.+ ++ ...+.+.+.... ..+
T Consensus 277 ~idDs~~tn~~a~~~al~~~~~~~ii~IlGG~~k~~~~~~l~~~~~~~~~~v~~~G-~~----~~~~~~~~~~~~--~~~ 349 (401)
T PRK03815 277 WVDDSKATNVDATLQALKRYKDKKIHLILGGDDKGVDLTPLFEFMKNLNIELYAIG-SN----TEKIQALAKEFN--IKA 349 (401)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCEEEEECCCCCCCCHHHHHHHHHhhCcEEEEEC-CC----HHHHHHHHhcCC--CeE
Confidence 7776666 776666 65542 1 11222222322 3333322 388887 21 223444333221 234
Q ss_pred EEeCCHHHHHHHHhhcCCCCCcEEEEec
Q psy1839 255 VEFSSVLDTYNFKYGLDPSKEYHILVTG 282 (304)
Q Consensus 255 ~~~~dr~~AI~~a~~~a~~~~d~VlvaG 282 (304)
..+.+.++|++.+.+.++ ++|+||+..
T Consensus 350 ~~~~~~e~av~~~~~~~~-~gdvVLlSP 376 (401)
T PRK03815 350 FVCEFLEKAVEEIKKVLK-QNEVALLSP 376 (401)
T ss_pred EEeCCHHHHHHHHHHhCC-CCCEEEeCh
Confidence 567899999999988885 899999864
No 42
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=99.38 E-value=2.3e-12 Score=112.02 Aligned_cols=96 Identities=24% Similarity=0.323 Sum_probs=69.7
Q ss_pred HHHHHHHHhCCCCEEEEeecCCCccc-c-ccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhcccc---CCceEEecC
Q psy1839 59 VMSFYVFVKEKPDAVIMEVGIGGRYD-N-TNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSA 133 (304)
Q Consensus 59 ~~A~~~f~~~~vd~aVlE~GlgGr~d-~-tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~---~~~~~V~~~ 133 (304)
...+..+.+.+++++|+|+|+++..+ . ..++ +|+++|||||+.||+++++ |+++|+.+|+++++ +++.+|+|.
T Consensus 38 ~~~~~~~~~~~~~~~V~E~~~~~~~~~~l~~~~-~p~i~viTni~~dH~~~~~-s~~~~~~~k~~~~~~~~~~~~~v~n~ 115 (188)
T PF08245_consen 38 PLLLLNAREGGADIAVLEVSEGGLGDERLSFLL-KPDIAVITNIGPDHLDRFG-SIEEYAEAKAKIFRGLKPGGVAVLNA 115 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEESSSCCCTSTTSGGS-BESEEEE----SSSHCCTS-SHHHHHHHHHGGHTTTSTTSEEEEET
T ss_pred HHHHhhhcccccceeeeeccCCccccceeeeee-ehheeeeceecccccccCC-CHHHHHHHHHhhhhhcccceEEEecC
Confidence 34445666779999999999974443 2 2323 5999999999999999997 89999999999997 567999999
Q ss_pred CCCCchHHHHHHHHHhhCCeEEEeCCCc
Q psy1839 134 NQRGPCKQILLETSRALNCVLLEAPSIL 161 (304)
Q Consensus 134 ~dd~~~~~~l~~~a~~~~~~~~~~~~~~ 161 (304)
|||.+.. .+...++++++|+...
T Consensus 116 -dd~~~~~----~~~~~~~~v~~~~~~~ 138 (188)
T PF08245_consen 116 -DDPELAE----IAANSKCKVITFGLDN 138 (188)
T ss_dssp -TSHHHHH----HHHHHTTTEEEEESSS
T ss_pred -CCHHHHH----HHHhcCCcEEEeccCc
Confidence 8885533 3344556677777654
No 43
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=6e-11 Score=115.75 Aligned_cols=192 Identities=17% Similarity=0.168 Sum_probs=128.6
Q ss_pred CCcEEEEcccchhhhhccCCCHHHHHHHHhcccc---CCceEEecCCCCCchHHHHHHHHHhhCCeEEEeCCCc--ccc-
Q psy1839 91 NTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL--NYR- 164 (304)
Q Consensus 91 ~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~---~~~~~V~~~~dd~~~~~~l~~~a~~~~~~~~~~~~~~--~~~- 164 (304)
+|.++|+|||..||+|+.| ++++|-.+=..+++ ..+.+|++. |||.+++++... ...++++||.+. ++.
T Consensus 174 ~P~~aIvTNid~DH~D~y~-~~~~i~~~F~~f~~~vp~~G~~v~~~-dd~~l~~l~~~~---~~~~v~tyG~~~~ad~~a 248 (459)
T COG0773 174 NPRVAIVTNIEFDHLDYYG-DLEAIKQAFHHFVRNVPFYGRAVVCG-DDPNLRELLSRG---CWSPVVTYGFDDEADWRA 248 (459)
T ss_pred CCCEEEEeCCCcchhhhhC-CHHHHHHHHHHHHHhCCccceEEEEC-CCHHHHHHHhcc---cCCcEEeecCCCcCcEEE
Confidence 6999999999999999999 89999887777774 457799999 999997766543 345677777653 211
Q ss_pred -------------------------cC--CC-------------------------c--ccccccCceeee--eCCceec
Q psy1839 165 -------------------------WR--GQ-------------------------P--LDEDWKNRFGVK--LDSRTAA 188 (304)
Q Consensus 165 -------------------------~~--~~-------------------------~--l~~~~~GR~e~~--~~~~~v~ 188 (304)
|+ +. . ....++-|||+. .++.+++
T Consensus 249 ~ni~~~~~~~~F~V~~~g~~~~~~~l~~pG~HNvlNAlaaia~a~~~Gi~~~~i~~aL~~F~GvkRRfe~~g~~~~~~vi 328 (459)
T COG0773 249 ENIRQDGSGTTFDVLFRGEELGEVKLPLPGRHNVLNALAAIAVARELGIDPEAIAEALASFQGVKRRFELKGEVNGVTVI 328 (459)
T ss_pred EEeEEeccccEEEEEEcCceeEEEEEcCCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCcceeeEEeeeECCEEEE
Confidence 00 00 0 115788899985 3567888
Q ss_pred cCCCCCCCcccc-cccCCC-CC--CC----------CCCchhH----HhcCCCCeEEEecCCCCcch-------HHHHHH
Q psy1839 189 PNGGHEPGRPNV-GQGGGG-FQ--SR----------SGDNSIR----SNANPLSSVDCHNVNDQSNS-------FHKIAT 243 (304)
Q Consensus 189 vD~AHnp~al~~-l~~l~~-~~--~~----------~~d~~~r----~~~~~~d~vi~T~~~dnpr~-------~~ii~~ 243 (304)
=||||.|...++ |+++|. ++ +| .|-++.= +.++.+|.||++++=...+. .+.+++
T Consensus 329 DDYaHHPtEI~aTL~aaR~~~~~~~rIvaifQPHrySRt~~~~~dF~~~l~~AD~v~l~~VY~A~e~~~~g~~~~~~l~~ 408 (459)
T COG0773 329 DDYAHHPTEIKATLAAARQKVPGGKRIVAVFQPHRYSRTRDLLDDFAKALSDADEVILLDVYAAGEEPIEGDVSSEDLAE 408 (459)
T ss_pred ecCCCCHHHHHHHHHHHHHhcCCCceEEEEECCCchHhHHHHHHHHHHHHhcCCEEEEecccccCCCCCcCCccHHHHHH
Confidence 899999999999 999976 33 23 2222211 33334899999963211111 334444
Q ss_pred HHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEE--ecchh-hHHHHHH
Q psy1839 244 VASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILV--TGSLH-LVGAFLN 292 (304)
Q Consensus 244 ~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~Vlv--aGSl~-lv~~~~~ 292 (304)
. +....++. +++..+..+...+.++ ++|+||+ +|+.. +..++++
T Consensus 409 ~---i~~~~~~~-~~~~~~~~~~l~~~~~-~gD~il~mGAGdi~~~~~~~~~ 455 (459)
T COG0773 409 K---IRQPGHVD-VPDLDDLVELLAKVAQ-PGDVILFMGAGDIGKIARELLE 455 (459)
T ss_pred H---hhcCCccc-CCCHHHHHHHHHhhCC-CCCEEEEecCCcHHHHHHHHHH
Confidence 3 33333333 6899999999999996 9999987 55653 3344443
No 44
>PRK14016 cyanophycin synthetase; Provisional
Probab=98.99 E-value=1.4e-09 Score=113.35 Aligned_cols=92 Identities=21% Similarity=0.262 Sum_probs=71.5
Q ss_pred HHHhCCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccC-CCHHHHHHHHhcccc---CCceEEecCCCCCch
Q psy1839 64 VFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLG-NTIEEITMQKAGIMK---PNCIAVTSANQRGPC 139 (304)
Q Consensus 64 ~f~~~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG-~Tle~Ia~~Ka~I~~---~~~~~V~~~~dd~~~ 139 (304)
.+....+|++|+|+|.+|.+...--..+|+++|+|||+.||++++| +|+|+|+.+|+.+++ +++.+|+|. ||+.+
T Consensus 538 ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~~~~K~~i~~~v~~~g~aVlNa-DD~~~ 616 (727)
T PRK14016 538 VLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEAVKPDGYAVLNA-DDPMV 616 (727)
T ss_pred HhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHHHHHHHHHHhhhCCCCeEEEcC-CCHHH
Confidence 3467789999999998887654333335899999999999999876 699999999999994 568899999 88876
Q ss_pred HHHHHHHHHhhCCeEEEeCCC
Q psy1839 140 KQILLETSRALNCVLLEAPSI 160 (304)
Q Consensus 140 ~~~l~~~a~~~~~~~~~~~~~ 160 (304)
..+ +....+.++.|+..
T Consensus 617 ~~~----~~~~~~~vi~fs~~ 633 (727)
T PRK14016 617 AAM----AERCKGKVIFFSMD 633 (727)
T ss_pred HHH----HHhCCCcEEEEeCC
Confidence 443 33344566667643
No 45
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=98.77 E-value=8.4e-10 Score=85.37 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=46.0
Q ss_pred ccCceeeee--CCceeccCCCCCCCcccc-cccCCCC-C-CC-------CCC---chhH------HhcCC-CCeEEEecC
Q psy1839 174 WKNRFGVKL--DSRTAAPNGGHEPGRPNV-GQGGGGF-Q-SR-------SGD---NSIR------SNANP-LSSVDCHNV 231 (304)
Q Consensus 174 ~~GR~e~~~--~~~~v~vD~AHnp~al~~-l~~l~~~-~-~~-------~~d---~~~r------~~~~~-~d~vi~T~~ 231 (304)
||||||++. +++.+++||||||+|+++ +++++.+ + ++ ++| +++. +.+.. .|.+|+|+
T Consensus 1 vpgR~e~v~~~~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~- 79 (91)
T PF02875_consen 1 VPGRMEVVREPNGPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTG- 79 (91)
T ss_dssp ETTSSEEEEEETTEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEET-
T ss_pred CCCCcEEEeeCCCcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcC-
Confidence 799999985 479999999999999999 9999764 3 22 344 5553 44555 78899997
Q ss_pred CCCcch
Q psy1839 232 NDQSNS 237 (304)
Q Consensus 232 ~dnpr~ 237 (304)
++||.
T Consensus 80 -~~~r~ 84 (91)
T PF02875_consen 80 -DNPRA 84 (91)
T ss_dssp -SBTTT
T ss_pred -CCCCC
Confidence 77876
No 46
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=77.68 E-value=7.5 Score=36.86 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHhCCCCEEEEee-cC-CCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEe
Q psy1839 54 FKFLTVMSFYVFVKEKPDAVIMEV-GI-GGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVT 131 (304)
Q Consensus 54 fE~~t~~A~~~f~~~~vd~aVlE~-Gl-gGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~ 131 (304)
.---|.-+...+...|+|++++|+ |. |+..|.++.+ |+.+++.+. -.| +++-..|+|++.-+-.+|+
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~a---Dt~~~v~~p-----g~G---D~~Q~iK~GimEiaDi~vI 196 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMA---DTFLVVMIP-----GAG---DDLQGIKAGIMEIADIIVI 196 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhc---ceEEEEecC-----CCC---cHHHHHHhhhhhhhheeeE
Confidence 333455566788899999999998 77 6888888886 455554442 134 4666789999998888999
Q ss_pred cCCCCC
Q psy1839 132 SANQRG 137 (304)
Q Consensus 132 ~~~dd~ 137 (304)
|- .|.
T Consensus 197 NK-aD~ 201 (323)
T COG1703 197 NK-ADR 201 (323)
T ss_pred ec-cCh
Confidence 98 553
No 47
>KOG4300|consensus
Probab=51.64 E-value=52 Score=29.82 Aligned_cols=90 Identities=21% Similarity=0.324 Sum_probs=56.3
Q ss_pred cceeEECCeeCCHHHHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhCCCCEEEEeecCCCccccccccCCC-
Q psy1839 14 RERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNT- 92 (304)
Q Consensus 14 ~ERi~ing~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~s~fE~~t~~A~~~f~~~~vd~aVlE~GlgGr~d~tn~~~~~- 92 (304)
.|+++-+..+++.+.|+.++++....-+. |+.. ...+|.-..+...|+|+|.|- ++|+---|
T Consensus 34 ~~~~~~~~~~~p~~~ft~~yne~~~~ykr------------elFs--~i~~~~gk~~K~~vLEvgcGt---G~Nfkfy~~ 96 (252)
T KOG4300|consen 34 YESRQKSDLLIPNSNFTSIYNEIADSYKR------------ELFS--GIYYFLGKSGKGDVLEVGCGT---GANFKFYPW 96 (252)
T ss_pred HHhcCccccccchhHHHHHHHHHHHHHHH------------HHHh--hhHHHhcccCccceEEecccC---CCCcccccC
Confidence 47788888899999998888776543321 2222 235788899999999999972 23441111
Q ss_pred -cEEEEcccchhhhhccCCCHHHHHHHHhccccCC
Q psy1839 93 -AVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPN 126 (304)
Q Consensus 93 -~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~ 126 (304)
.+.-+|-|... ..||+|+..++.=-++.
T Consensus 97 ~p~~svt~lDpn------~~mee~~~ks~~E~k~~ 125 (252)
T KOG4300|consen 97 KPINSVTCLDPN------EKMEEIADKSAAEKKPL 125 (252)
T ss_pred CCCceEEEeCCc------HHHHHHHHHHHhhccCc
Confidence 22334555432 35888887765544443
No 48
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=47.82 E-value=51 Score=25.11 Aligned_cols=40 Identities=8% Similarity=0.197 Sum_probs=29.1
Q ss_pred eeCCHHHHHHHHHH--------------HHHHHHHhhhcCCCCCChhHHHHHHH
Q psy1839 22 EPISYDKFTKYFWT--------------VYNALHAKRKHAEDMPAYFKFLTVMS 61 (304)
Q Consensus 22 ~~i~~~~~~~~~~~--------------v~~~~~~~~~~~~~~~s~fE~~t~~A 61 (304)
..||.++|..++.. +...+++.+...++..+|=|++++++
T Consensus 27 ~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 27 YKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred CEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 36999999998854 44555555555567889988888775
No 49
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=45.41 E-value=77 Score=26.25 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=23.2
Q ss_pred CCCCCcceeEECCeeCCHHHHHHHHHH
Q psy1839 9 HLIEVRERIKLNGEPISYDKFTKYFWT 35 (304)
Q Consensus 9 hl~~~~ERi~ing~~i~~~~~~~~~~~ 35 (304)
-|.+|+=++.|+|+++|++||.++.+.
T Consensus 69 ~l~~f~W~lalGd~~Ls~eEf~~L~~~ 95 (141)
T PF12419_consen 69 QLLDFDWELALGDEELSEEEFEQLVEQ 95 (141)
T ss_pred HHhcceEEEEECCEECCHHHHHHHHHc
Confidence 467888899999999999999988643
No 50
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=41.88 E-value=68 Score=27.25 Aligned_cols=49 Identities=10% Similarity=0.010 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCC-CcEEEeCCHHHHHHHHhhcC--CCCCcEEEEecchhh
Q psy1839 238 FHKIATVASALSQR-SKVVEFSSVLDTYNFKYGLD--PSKEYHILVTGSLHL 286 (304)
Q Consensus 238 ~~ii~~~~~g~~~~-~~~~~~~dr~~AI~~a~~~a--~~~~d~VlvaGSl~l 286 (304)
...++..+...+.. ..+.+++|-.+.|..+++.+ ...-|+|+++|..++
T Consensus 24 ~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~ 75 (163)
T TIGR02667 24 GQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGF 75 (163)
T ss_pred HHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 34566655554432 23456788888888887664 125799999998765
No 51
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=40.77 E-value=33 Score=31.91 Aligned_cols=74 Identities=24% Similarity=0.264 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCCCCEEEEee-cC-CCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCC
Q psy1839 57 LTVMSFYVFVKEKPDAVIMEV-GI-GGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSAN 134 (304)
Q Consensus 57 ~t~~A~~~f~~~~vd~aVlE~-Gl-gGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~ 134 (304)
-|.-+...+...|.|++++|+ |. |...|..++++ ..+.|+++=. |+. |-..|+||+.-.-.+|+|-.
T Consensus 109 ~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD-~~v~v~~Pg~-------GD~---iQ~~KaGimEiaDi~vVNKa 177 (266)
T PF03308_consen 109 ATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMAD-TVVLVLVPGL-------GDE---IQAIKAGIMEIADIFVVNKA 177 (266)
T ss_dssp HHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSS-EEEEEEESST-------CCC---CCTB-TTHHHH-SEEEEE--
T ss_pred hHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcC-eEEEEecCCC-------ccH---HHHHhhhhhhhccEEEEeCC
Confidence 344556777889999999998 87 58888888764 3344455433 332 22567888886677888883
Q ss_pred CCCchHH
Q psy1839 135 QRGPCKQ 141 (304)
Q Consensus 135 dd~~~~~ 141 (304)
|-+.+..
T Consensus 178 D~~gA~~ 184 (266)
T PF03308_consen 178 DRPGADR 184 (266)
T ss_dssp SHHHHHH
T ss_pred ChHHHHH
Confidence 4344433
No 52
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=40.66 E-value=65 Score=27.59 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcCCC-CcEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhhH
Q psy1839 238 FHKIATVASALSQR-SKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLV 287 (304)
Q Consensus 238 ~~ii~~~~~g~~~~-~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~lv 287 (304)
...|+..+...+.. ..+.+++|..+.|..++..+-...|+|+++|-.+.-
T Consensus 21 ~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t 71 (170)
T cd00885 21 AAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGPT 71 (170)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCC
Confidence 34666666655443 234567888888888887553257999999998754
No 53
>PRK01215 competence damage-inducible protein A; Provisional
Probab=35.13 E-value=86 Score=28.96 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=34.7
Q ss_pred HHHHHHHHhhcCCCC-cEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhhH
Q psy1839 238 FHKIATVASALSQRS-KVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLV 287 (304)
Q Consensus 238 ~~ii~~~~~g~~~~~-~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~lv 287 (304)
...++..+...+..- .+.+++|..+.|..+++.+....|+|+++|.++.-
T Consensus 25 ~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g~t 75 (264)
T PRK01215 25 ASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLGPT 75 (264)
T ss_pred HHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 456677666655432 24457888888888887663246999999998754
No 54
>PRK10646 ADP-binding protein; Provisional
Probab=34.46 E-value=85 Score=26.64 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=33.4
Q ss_pred eCCHHHHHHHHhhcCC--CCCcEEEEecch-----hhHHHHHHHhcCCcccccC
Q psy1839 257 FSSVLDTYNFKYGLDP--SKEYHILVTGSL-----HLVGAFLNVLSNYDSVSSK 303 (304)
Q Consensus 257 ~~dr~~AI~~a~~~a~--~~~d~VlvaGSl-----~lv~~~~~~l~~~~~~~~~ 303 (304)
.++.++-.+.+..+++ +++++|++.|-| .|+-++.+.||-.+.|+|-
T Consensus 8 ~~s~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SP 61 (153)
T PRK10646 8 LPDEQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQGNVKSP 61 (153)
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 4566665555555442 478999887655 5888889999988888873
No 55
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=30.67 E-value=1.1e+02 Score=28.09 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=50.4
Q ss_pred ECCeeCCHHHHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhCCCCEEEEeecC---CCccccccccCCCcEE
Q psy1839 19 LNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGI---GGRYDNTNIIPNTAVV 95 (304)
Q Consensus 19 ing~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~s~fE~~t~~A~~~f~~~~vd~aVlE~Gl---gGr~d~tn~~~~~~va 95 (304)
++-..||..-+.++++.+.+..+.--.--+..||-+ .|-.|+++.+.+++|+|-.+ ||-|-....+ |.+
T Consensus 8 ~~E~~itraI~~~~~~~l~~~~esDViIVGaGPsGL-----tAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf--~~i- 79 (262)
T COG1635 8 LREVKITRAITERYFEDLLDYLESDVIIVGAGPSGL-----TAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLF--NKI- 79 (262)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhccEEEECcCcchH-----HHHHHHHhCCceEEEEEeecccCCccccccccc--cee-
Confidence 344567777777777777666553211123456664 34489999999999999965 5666666665 233
Q ss_pred EEcccchhhhhccC
Q psy1839 96 GITSLGYDHTAVLG 109 (304)
Q Consensus 96 viTnIg~DHl~~lG 109 (304)
|+-.=...-|+-+|
T Consensus 80 Vv~~~a~~iL~e~g 93 (262)
T COG1635 80 VVREEADEILDEFG 93 (262)
T ss_pred eecchHHHHHHHhC
Confidence 33333334444444
No 56
>PRK00549 competence damage-inducible protein A; Provisional
Probab=28.57 E-value=1.4e+02 Score=29.49 Aligned_cols=50 Identities=10% Similarity=0.030 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcCCC-CcEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhhH
Q psy1839 238 FHKIATVASALSQR-SKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLV 287 (304)
Q Consensus 238 ~~ii~~~~~g~~~~-~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~lv 287 (304)
...|+..+..++.. ..+.+++|..+.|..++..+....|+|+++|.++.-
T Consensus 22 ~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGlGpt 72 (414)
T PRK00549 22 AQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGLGPT 72 (414)
T ss_pred HHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCCCCC
Confidence 44666666655443 234567898898998887664356999999998753
No 57
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=27.34 E-value=56 Score=25.86 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=24.2
Q ss_pred CHHHHHHHHhhcCC--CCCcEEEEecchhhHHHHHHHhcC
Q psy1839 259 SVLDTYNFKYGLDP--SKEYHILVTGSLHLVGAFLNVLSN 296 (304)
Q Consensus 259 dr~~AI~~a~~~a~--~~~d~VlvaGSl~lv~~~~~~l~~ 296 (304)
+.+|.|-+|.+++. +.+-+| |+|++|.+|.++|-
T Consensus 3 t~qELIPfAKEmlaQkPsrkmv----KlYvLGSvLA~~Gv 38 (102)
T PF15103_consen 3 TMQELIPFAKEMLAQKPSRKMV----KLYVLGSVLAFFGV 38 (102)
T ss_pred cHHHHHHHHHHHHhcCCCCCeE----eeehhhhHHHHHHH
Confidence 56788999998773 223444 67888888887763
No 58
>PRK03670 competence damage-inducible protein A; Provisional
Probab=25.95 E-value=1.7e+02 Score=26.88 Aligned_cols=49 Identities=10% Similarity=-0.002 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCC-CcEEEeCCHHHHHHHHhhcC-CCCCcEEEEecchhh
Q psy1839 238 FHKIATVASALSQR-SKVVEFSSVLDTYNFKYGLD-PSKEYHILVTGSLHL 286 (304)
Q Consensus 238 ~~ii~~~~~g~~~~-~~~~~~~dr~~AI~~a~~~a-~~~~d~VlvaGSl~l 286 (304)
...|+..+..++.. ..+.+++|..+.|..++..+ ....|+|+++|.++.
T Consensus 22 ~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlGp 72 (252)
T PRK03670 22 SAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLGP 72 (252)
T ss_pred HHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCccC
Confidence 44666666655443 23556799999898888764 313599999999875
No 59
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=25.88 E-value=1.6e+02 Score=23.70 Aligned_cols=49 Identities=10% Similarity=-0.023 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcCCCC-cEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhh
Q psy1839 238 FHKIATVASALSQRS-KVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHL 286 (304)
Q Consensus 238 ~~ii~~~~~g~~~~~-~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~l 286 (304)
...+++.+...+... ...+.+|..++|+.+++.+-..-|+|+.+|-.+.
T Consensus 21 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~ 70 (133)
T cd00758 21 GPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGV 70 (133)
T ss_pred HHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCC
Confidence 345666566554322 2335688888888888755224799999997764
No 60
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=25.67 E-value=77 Score=28.45 Aligned_cols=32 Identities=16% Similarity=0.359 Sum_probs=26.4
Q ss_pred CCChhHHHHHHHHHHHHhCCCCEEEEeecCCCcccc
Q psy1839 50 MPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDN 85 (304)
Q Consensus 50 ~~s~fE~~t~~A~~~f~~~~vd~aVlE~GlgGr~d~ 85 (304)
.-|-+| +|+.+..+++.+-+++=-|+|||.|-
T Consensus 76 d~TD~e----lAl~~a~e~g~d~i~i~Ga~GGR~DH 107 (212)
T COG1564 76 DSTDLE----LALDEALERGADEIVILGALGGRLDH 107 (212)
T ss_pred ccchHH----HHHHHHHHcCCCEEEEEecCCChHHH
Confidence 346677 78888889999888888889999885
No 61
>PF06535 RGM_N: Repulsive guidance molecule (RGM) N-terminus; InterPro: IPR010536 This entry represents the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but Q8JG54 from SWISSPROT from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum [].
Probab=25.28 E-value=24 Score=30.23 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=15.3
Q ss_pred ceeecCCCCCCCcceeEE
Q psy1839 2 TRFFSSPHLIEVRERIKL 19 (304)
Q Consensus 2 vG~ftSPhl~~~~ERi~i 19 (304)
.|+|-+|||..|++-++-
T Consensus 102 CglFGDPHLRTF~~~fqT 119 (161)
T PF06535_consen 102 CGLFGDPHLRTFNDEFQT 119 (161)
T ss_pred ecccCChhHhhccCCcee
Confidence 589999999999987753
No 62
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=24.95 E-value=1.7e+02 Score=28.98 Aligned_cols=49 Identities=6% Similarity=0.022 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCCC-cEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhh
Q psy1839 238 FHKIATVASALSQRS-KVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHL 286 (304)
Q Consensus 238 ~~ii~~~~~g~~~~~-~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~l 286 (304)
...|+..+..++..- ...+++|..+.|..++..+....|+|+++|.++.
T Consensus 22 ~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlgp 71 (413)
T TIGR00200 22 AQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLGP 71 (413)
T ss_pred HHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 446666666555432 3446788888888888766335799999999774
No 63
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=24.28 E-value=1.1e+02 Score=25.72 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=21.7
Q ss_pred eEECCeeCCHHHHHHHHHHHHHHHHH
Q psy1839 17 IKLNGEPISYDKFTKYFWTVYNALHA 42 (304)
Q Consensus 17 i~ing~~i~~~~~~~~~~~v~~~~~~ 42 (304)
=.|||+.|+-++|.+.++......+.
T Consensus 42 G~VnGe~Is~~ef~~~v~~~~~~~k~ 67 (145)
T PF13623_consen 42 GEVNGEKISYQEFQQRVEQATENYKQ 67 (145)
T ss_pred EeECCEEcCHHHHHHHHHHHHHHHHH
Confidence 46899999999999998888766653
No 64
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=24.20 E-value=4e+02 Score=21.77 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=42.1
Q ss_pred HHHHHHHhCCCCEEEEeecCCCccccccccCCCcEEE-Ecc-cchhhhhccCCCHHH---HHHHHhcccc-CCceEEecC
Q psy1839 60 MSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVG-ITS-LGYDHTAVLGNTIEE---ITMQKAGIMK-PNCIAVTSA 133 (304)
Q Consensus 60 ~A~~~f~~~~vd~aVlE~GlgGr~d~tn~~~~~~vav-iTn-Ig~DHl~~lG~Tle~---Ia~~Ka~I~~-~~~~~V~~~ 133 (304)
+++..+....+.++.+-+|+.||.+.+-.-+ -|.++ +.. .+..|.+|+- .+.+ .+-..+|+-. +|+....|+
T Consensus 38 la~~~~~~pp~~~a~lalGS~GR~E~~~~sD-qD~alv~~d~~~~~~~~~f~-~~a~~~~~~L~~~G~~~C~g~vmasnp 115 (138)
T PF03445_consen 38 LAEAEMGPPPVPFAWLALGSYGRREQTLYSD-QDNALVFEDEESEEDRAYFE-AFAERLVDALDECGFPPCPGGVMASNP 115 (138)
T ss_pred HHHHHhCCCCCCEEEEEECcccccCCCcCcc-ccceeeecCccchhHHHHHH-HHHHHHHHHHHHcCCCCCCCCcCccCh
Confidence 4455555679999999999999999865543 24333 444 3445555553 2222 2234455544 455555554
No 65
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=23.98 E-value=1.8e+02 Score=24.04 Aligned_cols=61 Identities=26% Similarity=0.312 Sum_probs=38.9
Q ss_pred HHHHhCCCCEEEEeecCCCccccccccCCC-cEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecC
Q psy1839 63 YVFVKEKPDAVIMEVGIGGRYDNTNIIPNT-AVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 133 (304)
Q Consensus 63 ~~f~~~~vd~aVlE~GlgGr~d~tn~~~~~-~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~ 133 (304)
..+...+.|++++++ -|-.-+...++... .+.++|+-. -.+.|+.-|..+|.....+++|-
T Consensus 85 ~~~~~~~~D~iiIDt-aG~~~~~~~~~~~Ad~~ivv~tpe---------~~D~y~~~k~~~~~~~~~~~~~k 146 (148)
T cd03114 85 RVLDAAGFDVIIVET-VGVGQSEVDIASMADTTVVVMAPG---------AGDDIQAIKAGIMEIADIVVVNK 146 (148)
T ss_pred HHHHhcCCCEEEEEC-CccChhhhhHHHhCCEEEEEECCC---------chhHHHHhhhhHhhhcCEEEEeC
Confidence 444566899999999 32111112232212 355566644 35689999999998887788775
No 66
>PF12427 DUF3665: Branched-chain amino acid aminotransferase ; InterPro: IPR024614 This uncharacterised domain is found in the N-terminal region of branched-chain amino acid aminotransferase II proteins in Corynebacterium. It is typically between 23 and 35 amino acids in length and contains a conserved TRT sequence motif.
Probab=21.99 E-value=89 Score=17.76 Aligned_cols=14 Identities=7% Similarity=0.252 Sum_probs=11.1
Q ss_pred CCCcchHHHHHHHH
Q psy1839 232 NDQSNSFHKIATVA 245 (304)
Q Consensus 232 ~dnpr~~~ii~~~~ 245 (304)
++||.+++.+.+|+
T Consensus 9 T~nPTs~~~L~eIL 22 (23)
T PF12427_consen 9 TENPTSPERLKEIL 22 (23)
T ss_pred cCCCCCHHHHHHHh
Confidence 58998888887775
No 67
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=21.95 E-value=2.4e+02 Score=24.83 Aligned_cols=50 Identities=8% Similarity=-0.133 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCC---CcEEEeCCHHHHHHHHhhcCC--CCCcEEEEecchhhH
Q psy1839 238 FHKIATVASALSQR---SKVVEFSSVLDTYNFKYGLDP--SKEYHILVTGSLHLV 287 (304)
Q Consensus 238 ~~ii~~~~~g~~~~---~~~~~~~dr~~AI~~a~~~a~--~~~d~VlvaGSl~lv 287 (304)
...+++.+...... ....+++|..+.|..++..+- ..-|+|+.+|..++-
T Consensus 25 g~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g 79 (193)
T PRK09417 25 IPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPA 79 (193)
T ss_pred HHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCC
Confidence 34666666654321 123567888888888887652 145999999987753
No 68
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=21.65 E-value=85 Score=21.90 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=19.2
Q ss_pred CCCcEEEEecchhhHHHHHHHhc
Q psy1839 273 SKEYHILVTGSLHLVGAFLNVLS 295 (304)
Q Consensus 273 ~~~d~VlvaGSl~lv~~~~~~l~ 295 (304)
+++|.++|.|+.--+..+.+++|
T Consensus 49 ~~gD~l~v~g~~~~i~~~~~~~g 71 (71)
T PF02080_consen 49 QAGDILIVVGDPEDIERFRELFG 71 (71)
T ss_dssp -TTEEEEEEEEHHHHHHHHHHT-
T ss_pred CCCCEEEEEECHHHHHHHHHhhC
Confidence 37999999999999998888775
No 69
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=21.03 E-value=90 Score=21.83 Aligned_cols=31 Identities=10% Similarity=0.146 Sum_probs=23.5
Q ss_pred EEEeCCHHHHHHHHhhcCCCC-CcEEEEecch
Q psy1839 254 VVEFSSVLDTYNFKYGLDPSK-EYHILVTGSL 284 (304)
Q Consensus 254 ~~~~~dr~~AI~~a~~~a~~~-~d~VlvaGSl 284 (304)
...+++.++||++|..+++.. +--|+|-+.-
T Consensus 22 ~~~~~Tk~eAi~~Ar~~a~~~~~~el~Ih~~d 53 (62)
T PF09954_consen 22 SKTFDTKAEAIEAARELAKNQGGGELIIHGRD 53 (62)
T ss_pred ccccCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 446799999999999999622 5677776653
No 70
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=20.89 E-value=1.3e+02 Score=24.75 Aligned_cols=48 Identities=8% Similarity=-0.017 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCCCC-cEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhh
Q psy1839 239 HKIATVASALSQRS-KVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHL 286 (304)
Q Consensus 239 ~ii~~~~~g~~~~~-~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~l 286 (304)
..|++.+...+..- .+.+++|..+.|..++..+...-|+|+++|..+.
T Consensus 30 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~ 78 (144)
T TIGR00177 30 PLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGV 78 (144)
T ss_pred HHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 45666665554432 2445788888888888766325799999998776
No 71
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=20.81 E-value=2.6e+02 Score=21.13 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=27.2
Q ss_pred eCCHHHHHHHHHHH--------------HHHHHHhhhcCCCCCChhHHHHHHHH
Q psy1839 23 PISYDKFTKYFWTV--------------YNALHAKRKHAEDMPAYFKFLTVMSF 62 (304)
Q Consensus 23 ~i~~~~~~~~~~~v--------------~~~~~~~~~~~~~~~s~fE~~t~~A~ 62 (304)
.||.+||..++..- ...++..+....+..+|=|++.+++-
T Consensus 27 ~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 27 QLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred eECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 79999999887554 23334344345678899888887753
No 72
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=20.79 E-value=1.4e+02 Score=24.73 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=41.5
Q ss_pred hCCCCEEEEeecCCCccccccccCCC--cEEEEcccchhhhhccCCCHHHHHHHHhccccC------CceEEecCCCCCc
Q psy1839 67 KEKPDAVIMEVGIGGRYDNTNIIPNT--AVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP------NCIAVTSANQRGP 138 (304)
Q Consensus 67 ~~~vd~aVlE~GlgGr~d~tn~~~~~--~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~------~~~~V~~~~dd~~ 138 (304)
..+.. -|+|+|+|.+.+....+.+. ++ +.|-|-..... .| +-..|--||.| +.-+|+...-.++
T Consensus 11 ~~~~~-kiVEVGiG~~~~vA~~L~~~G~dV-~~tDi~~~~a~-~g-----~~~v~DDif~P~l~iY~~a~lIYSiRPP~E 82 (127)
T PF03686_consen 11 LNNYG-KIVEVGIGFNPEVAKKLKERGFDV-IATDINPRKAP-EG-----VNFVVDDIFNPNLEIYEGADLIYSIRPPPE 82 (127)
T ss_dssp HS-SS-EEEEET-TT--HHHHHHHHHS-EE-EEE-SS-S-----S-----TTEE---SSS--HHHHTTEEEEEEES--TT
T ss_pred hCCCC-cEEEECcCCCHHHHHHHHHcCCcE-EEEECcccccc-cC-----cceeeecccCCCHHHhcCCcEEEEeCCChH
Confidence 44555 88999999988875544321 33 34555444111 11 11122233433 3445655423577
Q ss_pred hHHHHHHHHHhhCCeEEEeCCC
Q psy1839 139 CKQILLETSRALNCVLLEAPSI 160 (304)
Q Consensus 139 ~~~~l~~~a~~~~~~~~~~~~~ 160 (304)
.+.-+.+.|++.++.++.....
T Consensus 83 l~~~il~lA~~v~adlii~pL~ 104 (127)
T PF03686_consen 83 LQPPILELAKKVGADLIIRPLG 104 (127)
T ss_dssp SHHHHHHHHHHHT-EEEEE-BT
T ss_pred HhHHHHHHHHHhCCCEEEECCC
Confidence 8888888999999998877554
Done!