Query psy1839
Match_columns 304
No_of_seqs 259 out of 1841
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 17:39:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrs_A Dihydrofolate:folylpoly 100.0 2.9E-57 1E-61 442.6 25.0 276 2-295 81-436 (437)
2 2vos_A Folylpolyglutamate synt 100.0 2.5E-53 8.4E-58 420.2 22.7 291 2-296 93-484 (487)
3 1jbw_A Folylpolyglutamate synt 100.0 1.4E-50 4.9E-55 393.9 20.3 283 2-296 68-425 (428)
4 1o5z_A Folylpolyglutamate synt 100.0 6.7E-50 2.3E-54 391.1 24.1 283 2-296 81-433 (442)
5 1w78_A FOLC bifunctional prote 100.0 6.2E-49 2.1E-53 381.6 23.6 277 2-296 78-416 (422)
6 1e8c_A UDP-N-acetylmuramoylala 100.0 3.1E-34 1E-38 284.0 10.1 227 51-287 156-469 (498)
7 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 6.8E-33 2.3E-37 276.8 16.7 223 50-287 193-507 (535)
8 1gg4_A UDP-N-acetylmuramoylala 100.0 3.7E-29 1.3E-33 244.8 10.8 211 67-295 149-447 (452)
9 2am1_A SP protein, UDP-N-acety 100.0 8.7E-29 3E-33 242.1 13.2 207 67-287 149-444 (454)
10 1p3d_A UDP-N-acetylmuramate--a 99.9 1.6E-27 5.5E-32 234.5 10.3 213 68-292 165-470 (475)
11 2f00_A UDP-N-acetylmuramate--L 99.9 2E-27 6.9E-32 234.7 5.9 214 68-293 166-477 (491)
12 2x5o_A UDP-N-acetylmuramoylala 99.9 4E-26 1.4E-30 222.5 9.7 203 68-289 149-421 (439)
13 1j6u_A UDP-N-acetylmuramate-al 99.9 2.9E-25 9.9E-30 218.3 11.6 200 71-292 165-451 (469)
14 4hv4_A UDP-N-acetylmuramate--L 99.9 5.6E-25 1.9E-29 217.6 10.2 215 69-295 170-483 (494)
15 3lk7_A UDP-N-acetylmuramoylala 99.9 3.7E-24 1.3E-28 209.3 15.0 199 68-282 159-423 (451)
16 3hn7_A UDP-N-acetylmuramate-L- 99.9 2.4E-24 8.2E-29 214.5 12.4 218 69-295 190-518 (524)
17 3mvn_A UDP-N-acetylmuramate:L- 99.5 8.6E-15 2.9E-19 124.2 4.1 116 172-294 22-158 (163)
18 3eag_A UDP-N-acetylmuramate:L- 99.3 8E-13 2.7E-17 123.7 6.3 89 67-162 163-260 (326)
19 2lv7_A Calcium-binding protein 38.8 40 0.0014 24.7 4.5 17 3-19 14-30 (100)
20 3iwt_A 178AA long hypothetical 35.9 61 0.0021 26.3 5.7 49 238-286 42-93 (178)
21 1qjt_A EH1, epidermal growth f 34.5 86 0.003 22.7 5.8 50 22-71 26-82 (99)
22 2pbq_A Molybdenum cofactor bio 32.7 22 0.00074 29.4 2.3 48 239-286 28-80 (178)
23 1y5e_A Molybdenum cofactor bio 31.9 64 0.0022 26.1 5.1 49 238-286 33-84 (169)
24 1knv_A BSE634I restriction end 30.7 60 0.002 29.2 4.9 70 21-90 35-117 (293)
25 3n22_A Protein S100-A2; EF-han 29.9 90 0.0031 22.7 5.2 40 22-61 28-81 (98)
26 2pjk_A 178AA long hypothetical 28.9 56 0.0019 26.9 4.3 49 238-286 42-93 (178)
27 1mkz_A Molybdenum cofactor bio 26.8 76 0.0026 25.8 4.7 49 238-286 30-81 (172)
28 1di6_A MOGA, molybdenum cofact 25.3 56 0.0019 27.5 3.6 48 239-286 26-78 (195)
29 2e2z_A TIM15; protein import, 24.7 51 0.0017 25.0 2.8 37 102-139 51-90 (100)
30 1a4p_A S100A10; S100 family, E 24.6 1.3E+02 0.0045 21.4 5.3 41 20-61 22-76 (96)
31 2lnk_A Protein S100-A4; EF-han 23.4 1.4E+02 0.0047 22.5 5.3 39 23-61 40-92 (113)
32 1fi6_A EH domain protein REPS1 23.1 93 0.0032 21.9 4.1 49 22-70 24-79 (92)
33 4eto_A Protein S100-A4; calciu 22.7 1.5E+02 0.0051 21.1 5.2 40 22-61 27-80 (93)
34 3kht_A Response regulator; PSI 22.6 2.3E+02 0.0078 20.7 6.9 52 225-281 7-58 (144)
35 2qvg_A Two component response 22.0 2.3E+02 0.0079 20.5 7.1 57 225-283 9-68 (143)
36 3heb_A Response regulator rece 20.1 2.7E+02 0.0092 20.5 7.2 42 225-268 6-47 (152)
No 1
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=100.00 E-value=2.9e-57 Score=442.61 Aligned_cols=276 Identities=25% Similarity=0.362 Sum_probs=230.0
Q ss_pred ceeecCCCCCCCcceeEECCeeCCHHHHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhCCCCEEEEeecCCC
Q psy1839 2 TRFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGG 81 (304)
Q Consensus 2 vG~ftSPhl~~~~ERi~ing~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~s~fE~~t~~A~~~f~~~~vd~aVlE~GlgG 81 (304)
||+||||||.+|||||+|||++||+++|.+++++|.+... +.+||+||++|++||.+|.++++|++||||||||
T Consensus 81 vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~~v~~~~~------~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlgg 154 (437)
T 3nrs_A 81 VGVYSSPHLLRYTERVRIQGQELSEAEHSHSFAQIEAGRG------DISLTYFEFGTLSALQLFKQAKLDVVILEVGLGG 154 (437)
T ss_dssp EEEECCCCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHT------TCCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSS
T ss_pred EEEECCCCcCCcceEEEECCEECCHHHHHHHHHHHHHhhc------CCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence 8999999999999999999999999999999999876542 4679999999999999999999999999999999
Q ss_pred ccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHHHHHhhCCeEEEeCCCc
Q psy1839 82 RYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL 161 (304)
Q Consensus 82 r~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~~a~~~~~~~~~~~~~~ 161 (304)
|+|+||++. |+++|||||+.||++|||+|+|+||++|++||++++++|+|. |++. .++.+.+++.++++++++.+.
T Consensus 155 rld~tnii~-p~vaVITnI~~DHld~lG~t~e~ia~~Ka~I~~~~~~~V~~~-d~~~--~~~~~~a~~~~~~~~~~g~~~ 230 (437)
T 3nrs_A 155 RLDATNIVD-SDVAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVVGE-PDMP--QSIADVAAELGAQLYRRDVAW 230 (437)
T ss_dssp TTSGGGGSC-CSEEEECCCCCCBCCCTTCSHHHHHHHHGGGCCTTSEEEECC-SSCC--HHHHHHHHHHTCEEEEBTTTE
T ss_pred ccccccccC-CCEEEEcCccHHHHHHhCCcHHHHHHHHHhhccCCCeEEECC-ccHH--HHHHHHHHHcCCcEEEecccc
Confidence 999999995 999999999999999999999999999999999999999998 6653 455677777888888776531
Q ss_pred c-------------------cc------------cC--C---------------Ccc----------cccccCceeeeeC
Q psy1839 162 N-------------------YR------------WR--G---------------QPL----------DEDWKNRFGVKLD 183 (304)
Q Consensus 162 ~-------------------~~------------~~--~---------------~~l----------~~~~~GR~e~~~~ 183 (304)
+ +. .. + .++ ...||||||++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~Na~~Alaa~~~~~lgi~~~~i~~gL~~~~~pGR~e~v~~ 310 (437)
T 3nrs_A 231 KFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPNVPLANAATALAVLHYSELPLSDEAIRQGLQAASLPGRFQVVSE 310 (437)
T ss_dssp EEEC--------------CCEEEEETTEEEEEECCCSSCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHCCCTTSSEEEET
T ss_pred eeeecccccccccccccCceEEEecCCcceeccCCcchhHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCceEEEec
Confidence 1 00 00 0 001 1359999999876
Q ss_pred CceeccCCCCCCCcccc-cccCC------CC-C-CC-------CCCchhHHhc---CC-CCeEEEecCCCCcch--HHHH
Q psy1839 184 SRTAAPNGGHEPGRPNV-GQGGG------GF-Q-SR-------SGDNSIRSNA---NP-LSSVDCHNVNDQSNS--FHKI 241 (304)
Q Consensus 184 ~~~v~vD~AHnp~al~~-l~~l~------~~-~-~~-------~~d~~~r~~~---~~-~d~vi~T~~~dnpr~--~~ii 241 (304)
++.+++||||||+|+++ +++++ .+ + ++ ++|||.++.+ .+ .|.+++++ +++||. ++.+
T Consensus 311 ~~~vi~D~AHNp~a~~all~~l~~~~~~~~~~~~~r~i~V~G~~~dkd~~~~~~~l~~~~~~v~~~~-~~~~r~~~~~~l 389 (437)
T 3nrs_A 311 QPLLILDVAHNPHAARYLVNRLAQVINPVNASKQGKVRAVVGMLSDKDIAGTLACLSERVDEWYCAP-LEGPRGASAGQL 389 (437)
T ss_dssp TTEEEECCCCSHHHHHHHHHHHHHTC--------CCEEEEECCBTTBCHHHHHHHHTTTCCEEEECC-CSSTTBCCHHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHhhcchhhhcCCCCEEEEEeCCCCCCHHHHHHHHHhcCCEEEEeC-CCCCCCCCHHHH
Confidence 78899999999999999 88887 54 2 33 7899988433 44 78888887 688987 6666
Q ss_pred HHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhhHHHHHHHhc
Q psy1839 242 ATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVLS 295 (304)
Q Consensus 242 ~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~lv~~~~~~l~ 295 (304)
++.+.. . ..++|+++|++.|.+.++ ++|+||||||+||+|++++.++
T Consensus 390 ~~~~~~---~---~~~~d~~~Ai~~a~~~a~-~~D~VLv~GS~~~v~~~~~~~~ 436 (437)
T 3nrs_A 390 AEHLVS---A---RQFSDVETAWRQAMQDAD-TQDVVIVCGSFHTVAHVMAALH 436 (437)
T ss_dssp HTTCSS---C---EECSSHHHHHHHHHHHCC-TTCEEEEESSHHHHHHHHHHTT
T ss_pred HHHHhh---C---CCcCCHHHHHHHHHHhcC-CCCeEEEEehHHHHHHHHHHhc
Confidence 554321 1 468999999999999996 9999999999999999999875
No 2
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=2.5e-53 Score=420.20 Aligned_cols=291 Identities=26% Similarity=0.365 Sum_probs=237.5
Q ss_pred ceeecCCCCCCCcceeEECCeeCCHHHHHHHHHHHHHHHHHhhh-------cCCCCCChhHHHHHHHHHHHHhCCCCEEE
Q psy1839 2 TRFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRK-------HAEDMPAYFKFLTVMSFYVFVKEKPDAVI 74 (304)
Q Consensus 2 vG~ftSPhl~~~~ERi~ing~~i~~~~~~~~~~~v~~~~~~~~~-------~~~~~~s~fE~~t~~A~~~f~~~~vd~aV 74 (304)
||+||||||.++||||+|||++|+++.|.++++++++..+.... .....+|+||++|++||.+|.+.++|++|
T Consensus 93 vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~V 172 (487)
T 2vos_A 93 TGRTTSPHLQSPVERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAV 172 (487)
T ss_dssp EEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEE
T ss_pred eEEECCCCcCcccceEEECCEECCHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 79999999999999999999999999999999999887765421 01346899999999999999999999999
Q ss_pred EeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccc------cCCceEEecCCCCCchHHHHHHHHH
Q psy1839 75 MEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM------KPNCIAVTSANQRGPCKQILLETSR 148 (304)
Q Consensus 75 lE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~------~~~~~~V~~~~dd~~~~~~l~~~a~ 148 (304)
||+||||++|+||++. |+++|||||++||+++||+|+|+||++|++|| ++++++|+|. |++.+.+++.+.+.
T Consensus 173 lEvg~gg~~d~tn~i~-p~vaVITnI~~DHld~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~-dd~~~~~~~~~~a~ 250 (487)
T 2vos_A 173 VEVGMGGRWDATNVIN-APVAVITPISIDHVDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGR-QVPKVMEVLLAESV 250 (487)
T ss_dssp EECSSSSTTSTTCSSC-CSEEEECCCCCCBCSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECC-CCHHHHHHHHHHHH
T ss_pred EEcCCCCccccccccC-CCEEEECCcchhhhhhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeC-CCHHHHHHHHHHHH
Confidence 9999999999999995 99999999999999999999999999999999 7788999999 88888888887777
Q ss_pred hhCCeEEEeCCCcc------------------------ccc--C-------------------C----Cccc--------
Q psy1839 149 ALNCVLLEAPSILN------------------------YRW--R-------------------G----QPLD-------- 171 (304)
Q Consensus 149 ~~~~~~~~~~~~~~------------------------~~~--~-------------------~----~~l~-------- 171 (304)
+.++++++++.+.. +.+ . + .++.
T Consensus 251 ~~~~~~~~~g~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAiaa~~~l~~~~~~~gi~~~~i~~gL 330 (487)
T 2vos_A 251 RADASVAREDSEFAVLRRQIAVGGQVLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLDGDAVRAGF 330 (487)
T ss_dssp HTTCEEEEBTTTBEEEEEEEETTEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHH
T ss_pred HcCCeEEEecCceEEEeeccccCCceEEEecCCcccceeecCCCCHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHH
Confidence 66677666543210 000 0 0 0111
Q ss_pred --ccccCceeeeeCCceeccCCCCCCCcccc-cccCCC-CC-CC-------CCCchhHHh---cCC-CCeEEEecCCCCc
Q psy1839 172 --EDWKNRFGVKLDSRTAAPNGGHEPGRPNV-GQGGGG-FQ-SR-------SGDNSIRSN---ANP-LSSVDCHNVNDQS 235 (304)
Q Consensus 172 --~~~~GR~e~~~~~~~v~vD~AHnp~al~~-l~~l~~-~~-~~-------~~d~~~r~~---~~~-~d~vi~T~~~dnp 235 (304)
..||||||++..++.+++||||||+++++ +++++. +. ++ ++|||.+.. +.+ +|.+|+|+ .++|
T Consensus 331 ~~~~~pGR~e~v~~~~~vi~D~AHNp~a~~a~l~~l~~~~~~~~~i~V~G~~~dkd~~~~~~~l~~~~d~vilt~-~~~~ 409 (487)
T 2vos_A 331 AAVTSPGRLERMRSAPTVFIDAAHNPAGASALAQTLAHEFDFRFLVGVLSVLGDKDVDGILAALEPVFDSVVVTH-NGSP 409 (487)
T ss_dssp HTCCCTTSSEEEETTTEEEECCCCSHHHHHHHHHHHHHSCCCSEEEEEECCBTTBCHHHHHHHHTTTCSEEEECC-CSCT
T ss_pred HhCcCCCceEEEcCCCeEEEECCCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCCHHHHHHHHHhhCCEEEEeC-CCCc
Confidence 35999999987678899999999999999 988864 33 22 678888743 344 89999997 5788
Q ss_pred ch--HHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCC-------------cEEEEecchhhHHHHHHHhcC
Q psy1839 236 NS--FHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKE-------------YHILVTGSLHLVGAFLNVLSN 296 (304)
Q Consensus 236 r~--~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~-------------d~VlvaGSl~lv~~~~~~l~~ 296 (304)
|. ++.|++++.+.....++.+++|+++|++.|+..++ ++ |+||||||+||||+++++|++
T Consensus 410 r~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ai~~a~~~a~-~~~~~~~~~~~~~~~d~vlv~GS~y~vg~~~~~l~~ 484 (487)
T 2vos_A 410 RALDVEALALAAGERFGPDRVRTAENLRDAIDVATSLVD-DAAADPDVAGDAFSRTGIVITGSVVTAGAARTLFGR 484 (487)
T ss_dssp TBCCHHHHHHHHHHHHCGGGEEECSSHHHHHHHHHHHHH-HHHTCTTTTC----CEEEEEESSHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHhhcCCCceEecCCHHHHHHHHHHhcc-cCcccccccccccCCCEEEEEeeHHHHHHHHHhhhh
Confidence 87 66777766543112246778999999999998874 44 999999999999999999875
No 3
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=1.4e-50 Score=393.87 Aligned_cols=283 Identities=23% Similarity=0.300 Sum_probs=224.6
Q ss_pred ceeecCCCCCCCcceeEECCeeCCHHHHHHHHHHHHHHHHHhhhc-CCCCCChhHHHHHHHHHHHHhCCCCEEEEeecCC
Q psy1839 2 TRFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKH-AEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG 80 (304)
Q Consensus 2 vG~ftSPhl~~~~ERi~ing~~i~~~~~~~~~~~v~~~~~~~~~~-~~~~~s~fE~~t~~A~~~f~~~~vd~aVlE~Glg 80 (304)
||+|||||+.+++|||+|||++|++++|.++++++++...+.... ...++|+||++|++||.+|.++++|++|||||+|
T Consensus 68 vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~ 147 (428)
T 1jbw_A 68 VGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIG 147 (428)
T ss_dssp EEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred EEEEeCCccCccceEEEECCEECCHHHHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 799999999999999999999999999999999999877654211 1246999999999999999999999999999999
Q ss_pred CccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHHHHHhhCCeEEEeCCC
Q psy1839 81 GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI 160 (304)
Q Consensus 81 Gr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~~a~~~~~~~~~~~~~ 160 (304)
||+|+||++. |+++|||||+.||+++||+|+|+|+++|++||++++++|+|. ||+.+.+++++.+++.++++++++.+
T Consensus 148 g~~d~t~~~~-p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~-dd~~~~~~~~~~a~~~~~~~~~~g~~ 225 (428)
T 1jbw_A 148 GDTDSTNVIT-PVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTGN-LVPDAAAVVAAKVATTGSQWLRFDRD 225 (428)
T ss_dssp STTSTTCSCC-CSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTCCEEECC-CCHHHHHHHHHHHHHHTCCEEEBTTT
T ss_pred ccccccccCC-CCEEEECcCcHhhhhhhCCCHHHHHHHHhccccCCceEEEeC-CCHHHHHHHHHHHHHcCCcEEEeCcc
Confidence 9999999994 999999999999999999999999999999999999999999 88988888887776666666666532
Q ss_pred c------------------------cccc--CC----------------C-c-----cc----------ccccCceeeee
Q psy1839 161 L------------------------NYRW--RG----------------Q-P-----LD----------EDWKNRFGVKL 182 (304)
Q Consensus 161 ~------------------------~~~~--~~----------------~-~-----l~----------~~~~GR~e~~~ 182 (304)
. .+.+ .+ . + +. ..||||||++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l~g~~~~~i~~~~i~~~L~~~~~~gR~e~~~ 305 (428)
T 1jbw_A 226 FSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASHWPARLEKIS 305 (428)
T ss_dssp EEEEEEEECSSSEEEEEEETTEEEEEEEESCCSTHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCCCTTSSEEEE
T ss_pred ceeeccccccCCceEEEecCCccccccccCCCChhHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHhCcCCCceEEec
Confidence 0 0000 00 0 1 21 24999999986
Q ss_pred CCceeccCCCCCCCcccc-cccCCCC-CCC-------CCCchhHHhc---CC-CCeEEE-ecCCCCcch--HHHHHHHHh
Q psy1839 183 DSRTAAPNGGHEPGRPNV-GQGGGGF-QSR-------SGDNSIRSNA---NP-LSSVDC-HNVNDQSNS--FHKIATVAS 246 (304)
Q Consensus 183 ~~~~v~vD~AHnp~al~~-l~~l~~~-~~~-------~~d~~~r~~~---~~-~d~vi~-T~~~dnpr~--~~ii~~~~~ 246 (304)
.++.+++||||||+|+++ +++++.+ +++ ++|++.++.+ .+ +|.+|+ |+ .++||. ++.+.+. .
T Consensus 306 ~~~~viiD~AhNp~s~~a~l~~l~~~~~~~~i~V~g~~~~kd~~~~~~~~~~~~d~vi~~~~-~~~~r~~~~~~l~~~-~ 383 (428)
T 1jbw_A 306 DTPLIVIDGAHNPDGINGLITALKQLFSQPITVIAGILADKDYAAMADRLTAAFSTVYLVPV-PGTPRALPEAGYEAL-H 383 (428)
T ss_dssp TTTTEEEECCCSHHHHHHHHHHHHHHCSSCCEEEEECSSSTTHHHHHHHHHHHCSEEEECCC-SCC--------------
T ss_pred CCCcEEEECCcCHHHHHHHHHHHHHhcCCCEEEEEeeCCCCCHHHHHHHHhhhCCEEEEECC-CCCCCCCCHHHHHhh-h
Confidence 567899999999999999 9888642 222 6788887433 34 899999 75 478877 3334332 1
Q ss_pred hcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhhHHHHHHHhcC
Q psy1839 247 ALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVLSN 296 (304)
Q Consensus 247 g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~lv~~~~~~l~~ 296 (304)
++..++|+++|++.|++.+ ++|+||||||+||++.++++|..
T Consensus 384 ------~~~~~~~~~~ai~~a~~~~--~~d~vLv~GS~~~~~~~~~~l~~ 425 (428)
T 1jbw_A 384 ------EGRLKDSWQEALAASLNDV--PDQPIVITGSLYLASAVRQTLLG 425 (428)
T ss_dssp --------CBCSSHHHHHHHHHHHC--TTSCEEEEESHHHHHHHHHHHTC
T ss_pred ------CCeecCCHHHHHHHHHhhC--CCCeEEEEeeHHHHHHHHHHHhh
Confidence 1445789999999999887 68999999999999999998854
No 4
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=6.7e-50 Score=391.15 Aligned_cols=283 Identities=25% Similarity=0.360 Sum_probs=224.4
Q ss_pred ceeecCCCCCCCcceeEECCeeCCHHHHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhCCCCEEEEeecCCC
Q psy1839 2 TRFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGG 81 (304)
Q Consensus 2 vG~ftSPhl~~~~ERi~ing~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~s~fE~~t~~A~~~f~~~~vd~aVlE~GlgG 81 (304)
||+||||||.++||||+|||.+|++++|.++++++++..+........+||+||++|++||.+|.+.++|++|||+|+||
T Consensus 81 vg~~~Sphl~~~neri~inG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~g 160 (442)
T 1o5z_A 81 VGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGG 160 (442)
T ss_dssp EEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSS
T ss_pred EEEECCCCcCccceeEEECCEECCHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 79999999999999999999999999999999999988776543233679999999999999999999999999999999
Q ss_pred ccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHHHHHhhCCeEEEeCCCc
Q psy1839 82 RYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL 161 (304)
Q Consensus 82 r~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~~a~~~~~~~~~~~~~~ 161 (304)
|+|+||++. |+++|||||++||+++||+|+|+|+++|++||++++++|+|. ||+.+.+++.+.|.+.++++++++.+.
T Consensus 161 ~~d~t~~~~-P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~~~~~~V~~~-dd~~~~~~~~~~a~~~~~~~~~~~~d~ 238 (442)
T 1o5z_A 161 RLDATNVVF-PLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGE-RKREALKVMEDVARKKSSRMYVIDKDF 238 (442)
T ss_dssp TTCGGGGCC-CSCEEECCCCC-------CCHHHHHHHHGGGCCTTCCEEECC-CCHHHHHHHHHHHHHHTCCEEEBTTTB
T ss_pred CccccccCC-CCEEEECCccHhhhhhhCcCHHHHHHHHHhhccCCccEEEcC-CChHHHHHHHHHHHHcCCcEEEeCcce
Confidence 999999985 999999999999999999999999999999999999999999 888888888877776677776665321
Q ss_pred -----------------------ccc--cCC--------------C--c--cc----------ccccCceeeeeC-Ccee
Q psy1839 162 -----------------------NYR--WRG--------------Q--P--LD----------EDWKNRFGVKLD-SRTA 187 (304)
Q Consensus 162 -----------------------~~~--~~~--------------~--~--l~----------~~~~GR~e~~~~-~~~v 187 (304)
.+. +.+ . . +. ..||||||++.. ++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~~~lgi~~~~i~~~L~~~~~~gR~e~~~~~~~~v 318 (442)
T 1o5z_A 239 SVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEATGLPLSEKAIREGLKNAKNLGRFEILEKNGKMY 318 (442)
T ss_dssp EEEEEECCTTCEEEEEESSSEEEEEEESSCSTHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCTTSSEEEEETTEEE
T ss_pred eeeccccccCCceEEEeccccccccccCCCcHhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhCCCCCceEEEEcCCCeE
Confidence 000 000 1 1 11 249999999854 3789
Q ss_pred ccCCCCCCCcccc-cccCCCC-C-CC-------CCCchhHH---hcCC-CCeEEEecCCCCcch--HHHHHHHHhhcCCC
Q psy1839 188 APNGGHEPGRPNV-GQGGGGF-Q-SR-------SGDNSIRS---NANP-LSSVDCHNVNDQSNS--FHKIATVASALSQR 251 (304)
Q Consensus 188 ~vD~AHnp~al~~-l~~l~~~-~-~~-------~~d~~~r~---~~~~-~d~vi~T~~~dnpr~--~~ii~~~~~g~~~~ 251 (304)
++||||||+++++ +++++.+ + ++ ++|++.++ .+.+ +|.+++++ +++||. ++.+++.+....
T Consensus 319 iiD~AhNp~s~~~~l~~l~~~~~~~~~i~V~g~~~dkd~~~~~~~l~~~~d~vi~~~-~~~~r~~~~~~i~~~~~~~~-- 395 (442)
T 1o5z_A 319 ILDGAHNPHGAESLVRSLKLYFNGEPLSLVIGILDDKNREDILRKYTGIFERVIVTR-VPSPRMKDMNSLVDMAKKFF-- 395 (442)
T ss_dssp EECCCCSHHHHHHHHHHHHHHCTTCCEEEEECCCTTSCHHHHHGGGTTTCSEEEECC-CSSTTCCCHHHHHHHHHHHC--
T ss_pred EEECCcCHHHHHHHHHHHHHhCCCCCEEEEEecCCCCCHHHHHHHHHhhCCEEEEEC-CCCCCCCCHHHHHHHHHhcC--
Confidence 9999999999999 9988642 3 22 77888874 3344 89888887 578887 565655444322
Q ss_pred CcEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhhHHHHHHHhcC
Q psy1839 252 SKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVLSN 296 (304)
Q Consensus 252 ~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~lv~~~~~~l~~ 296 (304)
.++..++|+++|++.| +|+||||||+|+++.++++|.+
T Consensus 396 ~~~~~~~~~~~Ai~~a-------~d~VLv~GS~~~~~~~~~~l~~ 433 (442)
T 1o5z_A 396 KNVEVIEDPLEAIEST-------ERATVVTGSLFLVGYVREFLTT 433 (442)
T ss_dssp SCCEECSSHHHHHHTC-------CSEEEEESCHHHHHHHHHHHHH
T ss_pred CCceecCCHHHHHHhC-------CCEEEEEeeHHHHHHHHHHHHh
Confidence 2356789999999876 6899999999999999999865
No 5
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=6.2e-49 Score=381.58 Aligned_cols=277 Identities=24% Similarity=0.365 Sum_probs=226.1
Q ss_pred ceeecCCCCCCCcceeEECCeeCCHHHHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhCCCCEEEEeecCCC
Q psy1839 2 TRFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGG 81 (304)
Q Consensus 2 vG~ftSPhl~~~~ERi~ing~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~s~fE~~t~~A~~~f~~~~vd~aVlE~GlgG 81 (304)
||+|||||+.++||||+|||++|++++|.++++++++... +..+|+||++|++||.+|.++++|++|||+|+||
T Consensus 78 ~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~~~~------~~~~t~~e~~t~~a~~~~~~~~~d~~VlEvgl~~ 151 (422)
T 1w78_A 78 VGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARG------DISLTYFEYGTLSALWLFKQAQLDVVILEVGLGG 151 (422)
T ss_dssp EEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHTT------TCCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred EEEECCCCcCcCceEEEECCEECCHHHHHHHHHHHHHHhc------cCCCChHHHHHHHHHHHHHHcCCCEEEEecCCCc
Confidence 7899999999999999999999999999999988865432 4568999999999999999999999999999999
Q ss_pred ccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHHHHHhhCCeEEEeCCCc
Q psy1839 82 RYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL 161 (304)
Q Consensus 82 r~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~~a~~~~~~~~~~~~~~ 161 (304)
|+|.||++. |+++|||||+.||+++||+|+|+|+++|++||++++++|+|. |++. ..+.+.+...++++++++.+.
T Consensus 152 ~~d~t~~~~-p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~-d~~~--~~~~~~a~~~~~~~~~~g~~~ 227 (422)
T 1w78_A 152 RLDATNIVD-ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSEKPAIVGE-PEMP--STIADVAQEKGALLQRRGVEW 227 (422)
T ss_dssp TTSGGGGSC-CSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTSEEEECC-SSCC--HHHHHHHHHHTCEEEEBTTTB
T ss_pred ccccccCCC-CCEEEECCcChhhhhhhCCCHHHHHHHHHhhccCCCcEEEcC-ccHH--HHHHHHHHHcCCceEEeCcce
Confidence 999999985 999999999999999999899999999999999999999988 6654 244555555566777665321
Q ss_pred c-------------------ccc---C--------------CCcc----------cccccCceeeeeCCceeccCCCCCC
Q psy1839 162 N-------------------YRW---R--------------GQPL----------DEDWKNRFGVKLDSRTAAPNGGHEP 195 (304)
Q Consensus 162 ~-------------------~~~---~--------------~~~l----------~~~~~GR~e~~~~~~~v~vD~AHnp 195 (304)
. ++. + +.++ ...||||||++..++.+++||||||
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~l~~hn~~Na~aAia~~~~~~~gi~~~~i~~~L~~~~~~gR~e~~~~~~~~i~D~Ahnp 307 (422)
T 1w78_A 228 NYSVTDHDWAFSDAHGTLENLPLPLVPQPNAATALAALRASGLEVSENAIRDGIASAILPGRFQIVSESPRVIFDVAHNP 307 (422)
T ss_dssp EEEECSSCEEEEETTEEEEEECCCSSCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHCCCTTSSEEEETTTEEEEECCCSH
T ss_pred eeeccCceEEEecCCcccccCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCceEEEEeCCCeEEEECCCCH
Confidence 0 010 0 0011 1248999999865678999999999
Q ss_pred Ccccc-cccCCCCC--CC-------CCCchhHHhc---CC-CCeEEEecCCCCcch--HHHHHHHHhhcCCCCcEEEeCC
Q psy1839 196 GRPNV-GQGGGGFQ--SR-------SGDNSIRSNA---NP-LSSVDCHNVNDQSNS--FHKIATVASALSQRSKVVEFSS 259 (304)
Q Consensus 196 ~al~~-l~~l~~~~--~~-------~~d~~~r~~~---~~-~d~vi~T~~~dnpr~--~~ii~~~~~g~~~~~~~~~~~d 259 (304)
+++++ +++++.+. ++ ++|++.++.+ .+ +|.+++++ +++||. ++.+.+.+.. +..++|
T Consensus 308 ~s~~~~l~~l~~~~~~~~~i~V~g~~~~kd~~~~~~~l~~~~d~vi~~~-~~~~r~~~~~~l~~~~~~------~~~~~~ 380 (422)
T 1w78_A 308 HAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAP-LEGPRGATAEQLLEHLGN------GKSFDS 380 (422)
T ss_dssp HHHHHHHHHHHHSCSCSCEEEEECCBTTSCHHHHHHHHHTTCSEEEECC-CCSSSBCCHHHHHHHHSS------CEECSS
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeccCCCCHHHHHHHHHhhCCEEEEEC-CCCCCCCCHHHHHHHHhh------cccCCC
Confidence 99999 88886542 23 6788887433 34 78999988 688887 5555554321 456799
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecchhhHHHHHHHhcC
Q psy1839 260 VLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVLSN 296 (304)
Q Consensus 260 r~~AI~~a~~~a~~~~d~VlvaGSl~lv~~~~~~l~~ 296 (304)
+++|+++|.+.++ ++|+||||||+|++|.++++|.+
T Consensus 381 ~~~ai~~a~~~~~-~~d~vLv~GS~~~~~~~~~~l~~ 416 (422)
T 1w78_A 381 VAQAWDAAMADAK-AEDTVLVCGSFHTVAHVMEVIDA 416 (422)
T ss_dssp HHHHHHHHHHHCC-TTCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCEEEEEeeHHHHHHHHHHHHh
Confidence 9999999999996 99999999999999999999875
No 6
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=3.1e-34 Score=284.02 Aligned_cols=227 Identities=15% Similarity=0.059 Sum_probs=166.1
Q ss_pred CChhHHHHHHH-HHHHHhCCCCEEEEeecC----CCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccC
Q psy1839 51 PAYFKFLTVMS-FYVFVKEKPDAVIMEVGI----GGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP 125 (304)
Q Consensus 51 ~s~fE~~t~~A-~~~f~~~~vd~aVlE~Gl----gGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~ 125 (304)
+|+||.+|+++ |.+|.+.++|++|||||+ +||++.++ |+++|||||+.||+++|| |+|+|+++|++||+.
T Consensus 156 ~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~~----p~vaViTNI~~DHld~~g-t~e~ia~aK~~i~~~ 230 (498)
T 1e8c_A 156 NTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALK----FAASVFTNLSRDHLDYHG-DMEHYEAAKWLLYSE 230 (498)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTCB----CSEEEECCCCSCCHHHHS-SHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEcCCchhhcccccccC----CCEEEEeCCChhhhhccC-CHHHHHHHHHHHhcc
Confidence 67788888775 788999999999999996 78999876 799999999999999999 899999999999975
Q ss_pred --CceEEecCCCCCchHHHHHHHHHhhCCeEEEeCCCc-----c--------------cc-------------cCC----
Q psy1839 126 --NCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL-----N--------------YR-------------WRG---- 167 (304)
Q Consensus 126 --~~~~V~~~~dd~~~~~~l~~~a~~~~~~~~~~~~~~-----~--------------~~-------------~~~---- 167 (304)
++++|+|. ||+.+..++... ...++++++|+... + +. +.+
T Consensus 231 ~~~~~~V~n~-dd~~~~~~~~~~-~~~~~~v~~~g~~~~~~~~d~~~~~~~~~~~g~~f~~~~~~~~~~~~l~l~G~hnv 308 (498)
T 1e8c_A 231 HHCGQAIINA-DDEVGRRWLAKL-PDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNV 308 (498)
T ss_dssp SBCCEEEEET-TSHHHHHHHTTC-TTCEEEESSSCCCTTTCSEEEEEEEEEECSSCEEEEEEETTCCEEEEECSCSHHHH
T ss_pred CCCCeEEEEC-CCHHHHHHHHhh-hccCCcEEEEecCCCCCcCCEEEEEEEEcCCceEEEEEECCceEEEEecCCcHHHH
Confidence 67899999 888776655431 11111333333110 0 00 000
Q ss_pred --------------C-------cc--cccccCceeeee-C-CceeccCCCCCCCcccc-cccCCCCC-CC---------C
Q psy1839 168 --------------Q-------PL--DEDWKNRFGVKL-D-SRTAAPNGGHEPGRPNV-GQGGGGFQ-SR---------S 211 (304)
Q Consensus 168 --------------~-------~l--~~~~~GR~e~~~-~-~~~v~vD~AHnp~al~~-l~~l~~~~-~~---------~ 211 (304)
. ++ ..+||||||++. . +..+++||||||+||++ |++++.+. +| +
T Consensus 309 ~NalaAia~~~~lGi~~~~i~~~L~~~~~~~gR~e~v~~~~~~~vi~DyahnP~s~~a~l~~l~~~~~~r~i~V~G~g~d 388 (498)
T 1e8c_A 309 SNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGD 388 (498)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHGGGCCCCTTSSEEECCTTSCEEEEECCCSHHHHHHHHHHHHHTCSSCEEEEECCCSS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEcCCCCEEEEECCCCHHHHHHHHHHHHhhCCCCEEEEECCCCC
Confidence 0 11 146999999985 3 45899999999999999 99886432 22 3
Q ss_pred CCchhHHhc----CC-CCeEEEecCCCCcch--HHHH-HHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecc
Q psy1839 212 GDNSIRSNA----NP-LSSVDCHNVNDQSNS--FHKI-ATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGS 283 (304)
Q Consensus 212 ~d~~~r~~~----~~-~d~vi~T~~~dnpr~--~~ii-~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGS 283 (304)
+|+.+|+.+ .. +|.+++|+ ++||. ++.+ +++..++....++..++|+++|+++|++.++ ++|+|||+||
T Consensus 389 r~~~~~~~~~~~~~~~~d~vi~~~--~~~r~e~~~~i~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~a~-~gd~VLv~Gk 465 (498)
T 1e8c_A 389 RDKGKRPLMGAIAEEFADVAVVTD--DNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAK-ENDVVLVAGK 465 (498)
T ss_dssp SCSTHHHHHHHHHHHHCSEEEECC--SCCBTSCHHHHHHHHHTTSSCGGGSEECSCHHHHHHHHHHHSC-TTCEEEEESC
T ss_pred cchhHHHHHHHHHHhCCCEEEEcC--CCCCCCCHHHHHHHHHhhccccCceEEECCHHHHHHHHHHhCC-CCCEEEEecC
Confidence 455445333 33 89999997 89987 4444 4444444321145678999999999999996 9999999999
Q ss_pred hhhH
Q psy1839 284 LHLV 287 (304)
Q Consensus 284 l~lv 287 (304)
-|..
T Consensus 466 G~~~ 469 (498)
T 1e8c_A 466 GHED 469 (498)
T ss_dssp TTCC
T ss_pred CCcc
Confidence 8764
No 7
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=6.8e-33 Score=276.77 Aligned_cols=223 Identities=19% Similarity=0.167 Sum_probs=165.4
Q ss_pred CCChhHHHHHHHH-HHHHhCCCCEEEEeecC----CCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhcccc
Q psy1839 50 MPAYFKFLTVMSF-YVFVKEKPDAVIMEVGI----GGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK 124 (304)
Q Consensus 50 ~~s~fE~~t~~A~-~~f~~~~vd~aVlE~Gl----gGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~ 124 (304)
++++||..++.++ .+|.+.++|++|||||+ +||+|.++ |+++|||||+.||+++|| |+|+|+++|++||+
T Consensus 193 ~~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~~----p~vaViTNI~~DHld~~g-s~e~ia~aK~~i~~ 267 (535)
T 2wtz_A 193 ALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTR----FAVGAFTNLSRDHLDFHP-SMADYFEAKASLFD 267 (535)
T ss_dssp SSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTCC----EEEEEECCCCSCCTTTSS-SHHHHHHHHHTTTC
T ss_pred CCccCcHHHHHHHHHHHHhCCCCEEEEECCCccccccccccCC----cCEEEEcCCChHHhhhcC-CHHHHHHHHHHHhc
Confidence 3677888888875 67889999999999996 78998865 799999999999999999 89999999999998
Q ss_pred C-----CceEEecCCCCCchHHHHHHHHHhhCCeEEEeCCC--------------------c----------ccc--cCC
Q psy1839 125 P-----NCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI--------------------L----------NYR--WRG 167 (304)
Q Consensus 125 ~-----~~~~V~~~~dd~~~~~~l~~~a~~~~~~~~~~~~~--------------------~----------~~~--~~~ 167 (304)
+ ++.+|+|. ||+.+..++... . ++++|+.. . .+. +.+
T Consensus 268 ~~~~~~~g~~Vln~-Dd~~~~~~~~~~-~----~v~~~g~~~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G 341 (535)
T 2wtz_A 268 PDSALRARTAVVCI-DDDAGRAMAARA-A----DAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPG 341 (535)
T ss_dssp TTSTTCCSEEEEEC-SSHHHHHHHHHH-S----SCEEEESSSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEEEESCCS
T ss_pred cccccCCCeEEEEC-CCHHHHHHHHhc-C----CEEEEecCCCcCcEEEEEEEEcCCCCeEEEEEeCCceEEEEEeCCCC
Confidence 3 46899999 888876665432 1 22222210 0 000 000
Q ss_pred ------------------C-------cc-cccccCceeeeeC--CceeccCCCCCCCcccc-cccCCCCC-CC-------
Q psy1839 168 ------------------Q-------PL-DEDWKNRFGVKLD--SRTAAPNGGHEPGRPNV-GQGGGGFQ-SR------- 210 (304)
Q Consensus 168 ------------------~-------~l-~~~~~GR~e~~~~--~~~v~vD~AHnp~al~~-l~~l~~~~-~~------- 210 (304)
. ++ ...||||||++.. +..+++||||||+||++ |++|+ +. +|
T Consensus 342 ~hnv~NalaAia~a~~lGi~~~~i~~~L~~~~~~gR~e~v~~~~~~~viiDyahNP~s~~aal~~l~-~~~~r~i~V~G~ 420 (535)
T 2wtz_A 342 RYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLA-HPDRRLAVVFGA 420 (535)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTTCCCTTSSEECCSSCSSEEEEECCCSHHHHHHHHHTTC-CSSSCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCceEEEEcCCCcEEEEECCCCHHHHHHHHHHhh-CCCCcEEEEECC
Confidence 0 11 0139999999853 44699999999999999 99998 53 23
Q ss_pred CCCch--hHHh----cCC-CCeEEEecCCCCcch--H-HHHHHHHhhcCCC---CcEEEeCCHHHHHHHHhhcCCCCCcE
Q psy1839 211 SGDNS--IRSN----ANP-LSSVDCHNVNDQSNS--F-HKIATVASALSQR---SKVVEFSSVLDTYNFKYGLDPSKEYH 277 (304)
Q Consensus 211 ~~d~~--~r~~----~~~-~d~vi~T~~~dnpr~--~-~ii~~~~~g~~~~---~~~~~~~dr~~AI~~a~~~a~~~~d~ 277 (304)
++|++ +|+. +.+ +|.+++|+ +|||. + ++.+++..++... .++..++|+++||++|++.++ ++|+
T Consensus 421 ~gdr~~~~~~~~~~~a~~~~d~vi~~~--~~~r~e~~~~i~~~i~~g~~~~~~~~~~~~~~d~~~Ai~~a~~~a~-~gD~ 497 (535)
T 2wtz_A 421 GGDRDPGKRAPMGRIAAQLADLVVVTD--DNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWAR-PGDV 497 (535)
T ss_dssp CTTSCGGGHHHHHHHHHHHCSEEEECC--SCCTTSCHHHHHHHHHHHHTTCC-CCEEEECCSHHHHHHHHHHHCC-TTCE
T ss_pred CCccchhhHHHHHHHHHhcCCEEEEcC--CCCCCCCHHHHHHHHHhhhhhcCCCCcEEEECCHHHHHHHHHHhCC-CCCE
Confidence 34444 4433 334 89999997 89987 4 3445555555321 246678999999999999996 9999
Q ss_pred EEEecchhhH
Q psy1839 278 ILVTGSLHLV 287 (304)
Q Consensus 278 VlvaGSl~lv 287 (304)
|||+||.|..
T Consensus 498 VLv~GsGhe~ 507 (535)
T 2wtz_A 498 VLIAGKGHET 507 (535)
T ss_dssp EEEESCTTCC
T ss_pred EEEEeCCCcc
Confidence 9999999987
No 8
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=99.96 E-value=3.7e-29 Score=244.80 Aligned_cols=211 Identities=15% Similarity=0.101 Sum_probs=145.4
Q ss_pred hCCCCEEEEeecCCCccc---cccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhcccc---CCceEEecCCCCCchH
Q psy1839 67 KEKPDAVIMEVGIGGRYD---NTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCK 140 (304)
Q Consensus 67 ~~~vd~aVlE~GlgGr~d---~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~---~~~~~V~~~~dd~~~~ 140 (304)
+.++|++|||+|++|++| .++++ +|+++|||||+.||+++|| |+|+|+++|++||+ +++++|+|. |||.+.
T Consensus 149 ~~~~d~~VlE~g~~~~~~~~~~~~~~-~p~vaviTNI~~DHld~~g-t~e~~~~aK~~i~~~~~~~~~~V~n~-dd~~~~ 225 (452)
T 1gg4_A 149 TPEYDYAVIELGANHQGEIAWTVSLT-RPEAALVNNLAAAHLEGFG-SLAGVAKAKGEIFSGLPENGIAIMNA-DNNDWL 225 (452)
T ss_dssp CTTCSEEEEECCCSSSSHHHHHHHHH-CCSEEEECCCC---------CHHHHHHHHHGGGGGCCTTCEEEEET-TBCCHH
T ss_pred CCCCcEEEEEeCCCCcchHHHHhCcc-CCCEEEECCCChHHhhhcC-CHHHHHHHHHHHHhhcccCCEEEEeC-CcHHHH
Confidence 567999999999999998 67766 4999999999999999999 99999999999997 678999999 888886
Q ss_pred HHHHHHHHhhCCeEEEeCCCc---cc--------------cc-------------CCC----------------------
Q psy1839 141 QILLETSRALNCVLLEAPSIL---NY--------------RW-------------RGQ---------------------- 168 (304)
Q Consensus 141 ~~l~~~a~~~~~~~~~~~~~~---~~--------------~~-------------~~~---------------------- 168 (304)
.+++ +.. ++++++|+... ++ .+ .+.
T Consensus 226 ~~~~--~~~-~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~lgi~~~~ 302 (452)
T 1gg4_A 226 NWQS--VIG-SRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDA 302 (452)
T ss_dssp HHHH--HHT-TSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEEEEEECSSSTHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHH--hhc-CCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEECCCEEEEEeCCCcHHHHHHHHHHHHHHHHcCCCHHH
Confidence 6542 222 45677776421 11 00 000
Q ss_pred ---cc--cccccCceeeee--CCceeccC-CCCCCCcccc-cccCCCCCCC----------CCCchh---H---HhcCC-
Q psy1839 169 ---PL--DEDWKNRFGVKL--DSRTAAPN-GGHEPGRPNV-GQGGGGFQSR----------SGDNSI---R---SNANP- 222 (304)
Q Consensus 169 ---~l--~~~~~GR~e~~~--~~~~v~vD-~AHnp~al~~-l~~l~~~~~~----------~~d~~~---r---~~~~~- 222 (304)
++ ..++|||||++. ++..++.| |||||+|+++ |++++.++++ +++++. + +.+.+
T Consensus 303 i~~~L~~~~~~~gR~e~~~~~~~~~vidDsyahnp~s~~~~l~~l~~~~~~~i~V~G~~~e~g~~~~~~~~~~~~~~~~~ 382 (452)
T 1gg4_A 303 IKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAA 382 (452)
T ss_dssp HHHHHTTCCCCTTSSEEEEEETTEEEEECCSCCCHHHHHHHHHHHHHSSSEEEEEECCCCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCceEEECCCCcEEEEeCCCCCHHHHHHHHHHHHhccCCEEEEECCccccCChhHHHHHHHHHHHHHc
Confidence 11 147999999984 35678888 9999999999 9988643211 344433 2 22332
Q ss_pred -CCeEEEecCCCCcchHHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCC--CcEEEEecchhhH-HHHHHHhc
Q psy1839 223 -LSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSK--EYHILVTGSLHLV-GAFLNVLS 295 (304)
Q Consensus 223 -~d~vi~T~~~dnpr~~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~--~d~VlvaGSl~lv-~~~~~~l~ 295 (304)
+|.+|+|+ + +++ .+.++ +.. . ..++|+++|++++.+.++ + +|+|||+||+||. ..+...|.
T Consensus 383 ~~d~vi~~g-~-~~~--~i~~~----~~~-~--~~~~~~~~ai~~a~~~~~-~~~gd~VLv~GS~~~~~e~i~~~l~ 447 (452)
T 1gg4_A 383 GIDRVLSVG-K-QSH--AISTA----SGV-G--EHFADKTALITRLKLLIA-EQQVITILVKGSRSAAMEEVVRALQ 447 (452)
T ss_dssp TCSEEEEES-S-STH--HHHHH----TTS-C--EEESSHHHHHHHHHHHHH-HCSSEEEEEECCGGGTTHHHHHHHC
T ss_pred CCCEEEEEC-c-CHH--HHHHH----hhc-C--ceeCCHHHHHHHHHHhhc-ccCCcEEEEEcCCcCCHHHHHHHHH
Confidence 79999998 3 332 22222 111 1 357999999999999996 8 9999999999997 55555553
No 9
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=99.96 E-value=8.7e-29 Score=242.13 Aligned_cols=207 Identities=14% Similarity=0.093 Sum_probs=146.6
Q ss_pred hCCCCEEEEeecCCCccc---cccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhcccc---CCceEEecCCCCCchH
Q psy1839 67 KEKPDAVIMEVGIGGRYD---NTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCK 140 (304)
Q Consensus 67 ~~~vd~aVlE~GlgGr~d---~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~---~~~~~V~~~~dd~~~~ 140 (304)
+.++|++|||+|++|++| .++++ +|+++|||||++||+++|| |+|+|+++|++||+ +++++|+|. || ...
T Consensus 149 ~~~~d~~VlE~g~~~~~~~~~~~~~~-~p~vaviTNi~~DHld~~g-t~e~~a~aK~~i~~~~~~~~~~V~n~-dd-~~~ 224 (454)
T 2am1_A 149 PEGTEKLVLEMGQDHLGDIHLLSELA-RPKTAIVTLVGEAHLAFFK-DRSEIAKGKMQIADGMASGSLLLAPA-DP-IVE 224 (454)
T ss_dssp CTTCCEEEEECCCSSTTHHHHHHHHH-CCSEEEECCCCCSSCTTCC-CHHHHHHHHGGGGTTCCTTCEEEEES-CG-GGG
T ss_pred CCCCcEEEEEcCCCCcchHHHHhCcc-CCCEEEEcCCchHhhhhcC-CHHHHHHHHHHHHhhcccCCEEEEEc-HH-HHH
Confidence 568999999999999999 67766 4999999999999999999 99999999999997 578899999 77 653
Q ss_pred HHHHHHHHhhCCeEEEeCCCc--c------------ccc-----------CCC-------------------------cc
Q psy1839 141 QILLETSRALNCVLLEAPSIL--N------------YRW-----------RGQ-------------------------PL 170 (304)
Q Consensus 141 ~~l~~~a~~~~~~~~~~~~~~--~------------~~~-----------~~~-------------------------~l 170 (304)
+ .+.. ++++++|+... + +.+ .+. ++
T Consensus 225 ~----~~~~-~~~~~~~g~~~~~d~~~i~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~lgi~~~~i~~~L 299 (454)
T 2am1_A 225 D----YLPI-DKKVVRFGQGAELEITDLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAF 299 (454)
T ss_dssp G----GCCS-SSEEEEESTTSSBCEEEEEECSSCEEEEETTCSSEEEESSCCHHHHHHHHHHHHHHHHTTCCHHHHHHHG
T ss_pred H----HHhc-CCcEEEEeCCCCCceeeeEEeCCceEEEEEecCcEEEecCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 2222 45667766311 0 100 000 11
Q ss_pred --cccccCceeeeeC-CceeccC--CCCCCCcccc-cccCCCCC----CC----------CCCch---hH---HhcCC--
Q psy1839 171 --DEDWKNRFGVKLD-SRTAAPN--GGHEPGRPNV-GQGGGGFQ----SR----------SGDNS---IR---SNANP-- 222 (304)
Q Consensus 171 --~~~~~GR~e~~~~-~~~v~vD--~AHnp~al~~-l~~l~~~~----~~----------~~d~~---~r---~~~~~-- 222 (304)
..+||||||++.. +..++|| |||||+++++ |++++.+. ++ +++++ ++ +.+.+
T Consensus 300 ~~~~~~~gR~e~~~~~~~~~iiDDsyahnp~s~~~~l~~l~~~~~~~~~~~i~V~G~~~e~G~~~~~~~~~~~~~~~~~~ 379 (454)
T 2am1_A 300 QHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDV 379 (454)
T ss_dssp GGCCCCCCCSCEECCTTTCEEEEECSCCSHHHHHHHHHHHTTSCCCSSCEEEEEEECCCCCCTTHHHHHHHGGGGCCTTT
T ss_pred HhCCCccCCeeEEECCCCeEEEEeCCCCCHHHHHHHHHHHHhcccccCCCEEEEECCchhcCcHHHHHHHHHHHHHHhcC
Confidence 1469999999853 3455777 9999999999 99987543 22 23333 23 33333
Q ss_pred CCeEEEecCCCCcchHHHHHHHHhhcCCCC--cEE---EeCCHHHHHHHHhhcCCCCCcEEEEecchhhH
Q psy1839 223 LSSVDCHNVNDQSNSFHKIATVASALSQRS--KVV---EFSSVLDTYNFKYGLDPSKEYHILVTGSLHLV 287 (304)
Q Consensus 223 ~d~vi~T~~~dnpr~~~ii~~~~~g~~~~~--~~~---~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~lv 287 (304)
+|.+|+|+ ++++. +..+......... .+. .++|+++|+++|++.++ ++|+|||+||+||.
T Consensus 380 ~d~vi~~g--~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~a~-~gd~VLv~GS~~~~ 444 (454)
T 2am1_A 380 LDIVIFYG--EDIAQ--LAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLG-AHDQILLKGSNSMN 444 (454)
T ss_dssp CSEEEEEE--STTHH--HHHHHHHHSCTTCEEEEEBSSSCBTHHHHHHHHHHHCC-TTEEEEEESSCCHH
T ss_pred CCEEEEEC--cCHHH--HHHHHhhccccCcceeeecccCCCCHHHHHHHHHHhCC-CCCEEEEEeCCcCC
Confidence 79999998 55432 2222211111111 122 45799999999999996 99999999999997
No 10
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=99.94 E-value=1.6e-27 Score=234.48 Aligned_cols=213 Identities=14% Similarity=0.098 Sum_probs=151.9
Q ss_pred CCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccc---cCCceEEecCCCCCchHHHHH
Q psy1839 68 EKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM---KPNCIAVTSANQRGPCKQILL 144 (304)
Q Consensus 68 ~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~---~~~~~~V~~~~dd~~~~~~l~ 144 (304)
.++|++|+|+|+ .|.++..-+|+++|||||+.||+++||+|+|+|+++|++++ ++++++|+|. |||.+.+++.
T Consensus 165 ~~~d~~VlE~~~---~~~~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~V~n~-dd~~~~~~~~ 240 (475)
T 1p3d_A 165 GASRYLIAEADE---SDASFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCA-DDPVLMELVP 240 (475)
T ss_dssp CSSSEEEEECCC---TTSGGGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEEEET-TCHHHHHHHH
T ss_pred CCCCEEEEEecC---CcCccccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhCCCCCEEEEEC-CCHHHHHHHH
Confidence 468999999984 44566544699999999999999999669999999999887 4678899999 8888766654
Q ss_pred HHHHhhCCeEEEeCCCc--c--------------ccc------------C--CC-------------------------c
Q psy1839 145 ETSRALNCVLLEAPSIL--N--------------YRW------------R--GQ-------------------------P 169 (304)
Q Consensus 145 ~~a~~~~~~~~~~~~~~--~--------------~~~------------~--~~-------------------------~ 169 (304)
. .++++++|+... + +.+ . +. +
T Consensus 241 ~----~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~lgi~~~~i~~~ 316 (475)
T 1p3d_A 241 K----VGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEA 316 (475)
T ss_dssp H----HCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred h----cCCCEEEEecCCCCcEEEEEEEEcCCceEEEEEECCCeEEEEEEcCccHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3 234555554310 0 000 0 00 0
Q ss_pred c--cccccCceeeeeC------CceeccCCCCCCCcccc-cccCCC-CC-CC----------CCCchhH----HhcCCCC
Q psy1839 170 L--DEDWKNRFGVKLD------SRTAAPNGGHEPGRPNV-GQGGGG-FQ-SR----------SGDNSIR----SNANPLS 224 (304)
Q Consensus 170 l--~~~~~GR~e~~~~------~~~v~vD~AHnp~al~~-l~~l~~-~~-~~----------~~d~~~r----~~~~~~d 224 (304)
+ ..++|||||++.. ++.+++||||||+++++ +++|+. ++ +| +++++.+ +.+..+|
T Consensus 317 L~~f~~~~gR~e~v~~~~~~~~~~~vi~DyaHnp~~~~a~l~al~~~~~~~~i~~v~g~~~~~r~~~~~~~~~~~~~~~d 396 (475)
T 1p3d_A 317 LADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQVD 396 (475)
T ss_dssp HHTCCCBTTSSEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHCSSCEEEEECCBCHHHHHHTHHHHHHHHTTSS
T ss_pred HHhCCCCCCCCEEEecccccCCCcEEEEeCCCCHHHHHHHHHHHHhhcCCCeEEEEECCCCCccHHHHHHHHHHHHHhCC
Confidence 1 1469999999743 68899999999999999 998875 33 33 1233332 2223389
Q ss_pred eEEEecCCCCcch--------HHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEe--cchhhHHHHHH
Q psy1839 225 SVDCHNVNDQSNS--------FHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVT--GSLHLVGAFLN 292 (304)
Q Consensus 225 ~vi~T~~~dnpr~--------~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~Vlva--GSl~lv~~~~~ 292 (304)
.+|+|+ ++|+. .+.+++.+..... ..+..++|+++|+++|.+.++ ++|+||++ ||+|++|..+.
T Consensus 397 ~vi~t~--~~~~~e~~~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~ai~~a~~~a~-~gd~VLv~G~Gs~~~v~~~l~ 470 (475)
T 1p3d_A 397 ALIMLD--VYAAGEAPIVGADSKSLCRSIRNLGK-VDPILVSDTSQLGDVLDQIIQ-DGDLILAQGAGSVSKISRGLA 470 (475)
T ss_dssp EEEEEC--CBCTTCCCCTTCSHHHHHHHHHHHTS-CCCEEESCGGGHHHHHHHHCC-TTCEEEEECSSTHHHHHHHHH
T ss_pred EEEEcC--CcCCCCCCCCCCCHHHHHHHHHhhCC-CceEEECCHHHHHHHHHHhCC-CCCEEEEECCCCHHHHHHHHH
Confidence 999997 55542 4555554443221 234567999999999999996 99999999 99999988763
No 11
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=99.93 E-value=2e-27 Score=234.74 Aligned_cols=214 Identities=11% Similarity=0.071 Sum_probs=150.0
Q ss_pred CCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccc---cCCceEEecCCCCCchHHHHH
Q psy1839 68 EKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM---KPNCIAVTSANQRGPCKQILL 144 (304)
Q Consensus 68 ~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~---~~~~~~V~~~~dd~~~~~~l~ 144 (304)
.++|++|+|+|+ .|.++..-+|+++|||||+.||+++||+|+|+|+++|++++ ++++++|+|. |||.+..++.
T Consensus 166 ~~~d~~VlE~~~---~~~~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~V~n~-dd~~~~~~~~ 241 (491)
T 2f00_A 166 GHGRYLIAEADE---SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCV-DDPVIRELLP 241 (491)
T ss_dssp CSSSEEEEECCC---TTSGGGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEEEEET-TSHHHHHHGG
T ss_pred CCCCEEEEEeCC---CccchhcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHHhCCCCCEEEEEC-CCHHHHHHHH
Confidence 468999999974 45566544699999999999999999669999999999988 4578899999 8887755443
Q ss_pred HHHHhhCCeEEEeCCCc--c--------------ccc---C-----------CC-------------------------c
Q psy1839 145 ETSRALNCVLLEAPSIL--N--------------YRW---R-----------GQ-------------------------P 169 (304)
Q Consensus 145 ~~a~~~~~~~~~~~~~~--~--------------~~~---~-----------~~-------------------------~ 169 (304)
..++++++|+... + +.+ + +. +
T Consensus 242 ----~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~ 317 (491)
T 2f00_A 242 ----RVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRA 317 (491)
T ss_dssp ----GCCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ----hcCCcEEEEeCCCCCCEEEEEEEEcCCceEEEEEECCceEEEEEEccchHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3345666665310 0 100 0 00 0
Q ss_pred c--cccccCceeeeeC----------C-ceeccCCCCCCCcccc-cccCCC-CC-CC----------CCCchhH----Hh
Q psy1839 170 L--DEDWKNRFGVKLD----------S-RTAAPNGGHEPGRPNV-GQGGGG-FQ-SR----------SGDNSIR----SN 219 (304)
Q Consensus 170 l--~~~~~GR~e~~~~----------~-~~v~vD~AHnp~al~~-l~~l~~-~~-~~----------~~d~~~r----~~ 219 (304)
+ ..+||||||++.. + +.+++||||||+++++ +++|+. ++ ++ +++++.. +.
T Consensus 318 L~~f~~~~gR~e~v~~~~~~~~~~~~g~~~vi~DyaHnp~~~~a~l~al~~~~~~~~i~~v~g~~~~~r~k~~~~~~~~~ 397 (491)
T 2f00_A 318 LESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANV 397 (491)
T ss_dssp HHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEECCCSHHHHHHHHHHHHTTCCSSEEEEEECCBCHHHHTTTHHHHHHH
T ss_pred HHhCCCCCCCCEEEccccccccccCCCcEEEEEeCCCCHHHHHHHHHHHHhhcCCCeEEEEECCCCCcchHHHHHHHHHH
Confidence 1 1469999999742 6 8899999999999999 998875 33 23 1233332 22
Q ss_pred cCCCCeEEEecCCCCcch--------HHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEe--cchhhHHH
Q psy1839 220 ANPLSSVDCHNVNDQSNS--------FHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVT--GSLHLVGA 289 (304)
Q Consensus 220 ~~~~d~vi~T~~~dnpr~--------~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~Vlva--GSl~lv~~ 289 (304)
+..+|.+|+|+ ++|+. .+.+++.+.... ...+..++|+++|+++|.+.++ ++|+||++ ||+|+++.
T Consensus 398 ~~~~d~vilt~--~~~~~e~~~~g~~~~~l~~~~~~~~-~~~~~~~~~~~~ai~~a~~~a~-~gd~VLv~gaGsl~~v~~ 473 (491)
T 2f00_A 398 LTQVDTLLMLE--VYPAGEAPIPGADSRSLCRTIRGRG-KIDPILVPDPARVAEMLAPVLT-GNDLILVQGAGNIGKIAR 473 (491)
T ss_dssp HTTSSEEEECC--CBCSSSCCCTTSSHHHHTTC--------CCEECCCSSCCHHHHGGGCC-SEEEEEEECSTTHHHHHH
T ss_pred HHhCCEEEEcC--CcCCCCCCCCCCCHHHHHHHHHhhC-CCceEEeCCHHHHHHHHHHhCC-CCCEEEEECCCCHHHHHH
Confidence 23389999996 55542 344433222111 1234567999999999999996 99999999 89999999
Q ss_pred HHHH
Q psy1839 290 FLNV 293 (304)
Q Consensus 290 ~~~~ 293 (304)
+|.-
T Consensus 474 ~l~~ 477 (491)
T 2f00_A 474 SLAE 477 (491)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 12
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=99.93 E-value=4e-26 Score=222.48 Aligned_cols=203 Identities=13% Similarity=0.105 Sum_probs=146.9
Q ss_pred CCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHHHH
Q psy1839 68 EKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETS 147 (304)
Q Consensus 68 ~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~~a 147 (304)
.+.|++|+|+|+ +++|.++.+. |+++|||||+.||+++||.|+|+|+++|++||++++++|+|. |||.+..++..
T Consensus 149 ~~~d~~VlE~~~-~~l~~~~~~~-p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~~~~~V~n~-dd~~~~~~~~~-- 223 (439)
T 2x5o_A 149 DECELYVLELSS-FQLETTSSLQ-AVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNA-DDALTMPIRGA-- 223 (439)
T ss_dssp TTCCEEEEECCH-HHHHTCCCCC-CSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTTCSEEEEET-TCGGGSCSCCC--
T ss_pred CCCCEEEEECCc-hhhcccccCC-CCEEEEeCCChhhcccccCCHHHHHHHHHHHHcCCCEEEEeC-CCHHHHHHhhc--
Confidence 356999999999 7789998874 999999999999999996699999999999999989999999 88876543321
Q ss_pred HhhCCeEEEeCCCc-------------------------ccccCCC-------------------------cc--ccccc
Q psy1839 148 RALNCVLLEAPSIL-------------------------NYRWRGQ-------------------------PL--DEDWK 175 (304)
Q Consensus 148 ~~~~~~~~~~~~~~-------------------------~~~~~~~-------------------------~l--~~~~~ 175 (304)
++++++|+... .+++.+. ++ ..+||
T Consensus 224 ---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~lgi~~~~i~~~L~~f~~~~ 300 (439)
T 2x5o_A 224 ---DERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLP 300 (439)
T ss_dssp ---SSCCEEECSSSSSEEEEEETTEEEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCCCCT
T ss_pred ---CCcEEEEeCCCcCcCcEEEECCEEEEeCCcEEEeehhcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence 23444444311 0000000 01 14799
Q ss_pred Cceeeee--CCceeccC-CCCCCCcccc-cccCCC-------CCCCCCCchhHH---hcCC-CCeEEEecCCCCcchHHH
Q psy1839 176 NRFGVKL--DSRTAAPN-GGHEPGRPNV-GQGGGG-------FQSRSGDNSIRS---NANP-LSSVDCHNVNDQSNSFHK 240 (304)
Q Consensus 176 GR~e~~~--~~~~v~vD-~AHnp~al~~-l~~l~~-------~~~~~~d~~~r~---~~~~-~d~vi~T~~~dnpr~~~i 240 (304)
||||++. ++..++.| |+|||+|+++ |++++. +++.+++.+.++ .+.. +|.+|+++ ++++ .
T Consensus 301 gR~e~~~~~~~~~vi~Ds~a~np~a~~~al~~l~~~~~~i~v~g~~~k~~~~~~~~~~l~~~~d~vi~~g-~~~~----~ 375 (439)
T 2x5o_A 301 HRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFG-RDGA----Q 375 (439)
T ss_dssp TSSEEEEEETTEEEEECTTCCSHHHHHHHHTTCCCSSCEEEEEESBCTTCCCGGGGGGSCSSSEEEEEES-TTHH----H
T ss_pred CceEEEEEECCEEEEEeCCCCCHHHHHHHHHhCCcCCCEEEEEcCCCCCCCHHHHHHHHHhhCCEEEEEC-CCHH----H
Confidence 9999974 45678889 9999999999 988863 112233224443 3344 78999997 3222 2
Q ss_pred HHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEE---ecchhhHHH
Q psy1839 241 IATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILV---TGSLHLVGA 289 (304)
Q Consensus 241 i~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~Vlv---aGSl~lv~~ 289 (304)
+++ +.. . .+..++|+++|++++.+.++ ++|+||+ |||++|...
T Consensus 376 ~~~-~~~---~-~~~~~~~~~~a~~~~~~~~~-~gd~vL~~~a~~S~~~~~~ 421 (439)
T 2x5o_A 376 LAA-LRP---E-VAEQTETMEQAMRLLAPRVQ-PGDMVLLSPACASLDQFKN 421 (439)
T ss_dssp HHT-TSG---G-GEEECSSHHHHHHHHGGGCC-TTCEEEECCSSBSTTTSSS
T ss_pred HHH-Hhc---C-CccccCCHHHHHHHHHHhCC-CCCEEEEcchhhHhhhhhC
Confidence 333 111 1 35678999999999999996 9999999 999999843
No 13
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=99.92 E-value=2.9e-25 Score=218.29 Aligned_cols=200 Identities=14% Similarity=0.035 Sum_probs=133.4
Q ss_pred CEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccCCceEEecCCCCCchHHHHHHHHHhh
Q psy1839 71 DAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRAL 150 (304)
Q Consensus 71 d~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~~~~l~~~a~~~ 150 (304)
| +|+|+|+. |.++..-+|+++|||||+.||+++||+|+|+|+++|.+++.....+|+|. ||+.+.++
T Consensus 165 ~-~V~E~~~~---~~~~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~~~V~n~-dd~~~~~~-------- 231 (469)
T 1j6u_A 165 P-VVYELDES---EEFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVVTFA-EDELTSHL-------- 231 (469)
T ss_dssp C-EEEEECTT---SGGGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCSEEEEET-TCTTTGGG--------
T ss_pred C-EEEECCCc---cCccccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCCEEEEEC-CChhhccc--------
Confidence 5 89999875 44543335999999999999999999779999999999886433789999 88866421
Q ss_pred CCeEEEeCC------------------------C-----cccccCC------------------C-------cc--cccc
Q psy1839 151 NCVLLEAPS------------------------I-----LNYRWRG------------------Q-------PL--DEDW 174 (304)
Q Consensus 151 ~~~~~~~~~------------------------~-----~~~~~~~------------------~-------~l--~~~~ 174 (304)
++++|+. . ..+++.+ . ++ ..+|
T Consensus 232 --~~~~~g~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~L~~f~g~ 309 (469)
T 1j6u_A 232 --GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFRGV 309 (469)
T ss_dssp --CSEEECSSSSSEEEEEEEECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCCCC
T ss_pred --eEEEEECCCceEEEEEEECCCCCEEEEEEECCeEEEEEEecCcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 1111110 0 0011100 0 01 1469
Q ss_pred cCceeee---e-CCceeccCCCCCCCcccc-cccCCC-CC-CC----------CCCchhH----HhcCCCCeEEEecCCC
Q psy1839 175 KNRFGVK---L-DSRTAAPNGGHEPGRPNV-GQGGGG-FQ-SR----------SGDNSIR----SNANPLSSVDCHNVND 233 (304)
Q Consensus 175 ~GR~e~~---~-~~~~v~vD~AHnp~al~~-l~~l~~-~~-~~----------~~d~~~r----~~~~~~d~vi~T~~~d 233 (304)
|||||++ . +++.++.||||||+++++ +++|+. |+ ++ +++++.. +.+..+|.+|+|+ +
T Consensus 310 ~gR~e~v~~~~~~g~~vi~D~aHnp~~~~a~l~al~~~~~~~~i~~I~g~g~~~r~~~~~~~l~~~~~~~d~vil~~--~ 387 (469)
T 1j6u_A 310 HRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRLEREDGNFAKALQLADEVVVTE--V 387 (469)
T ss_dssp TTSSEEEEEETTTTEEEEEECCCSHHHHHHHHHHHHHHCSSSEEEEEECCBC--------CHHHHHHTTSSEEEECC--C
T ss_pred CCCcEEEcccccCCcEEEEeCCCCHHHHHHHHHHHHHhcCCCcEEEEEcCCCCCccHHHHHHHHHHHhcCCEEEEcc--c
Confidence 9999998 3 468999999999999999 888873 53 22 3445533 2222389999997 4
Q ss_pred Cc-c-----h--HHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEE--ecchhhHHHHHH
Q psy1839 234 QS-N-----S--FHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILV--TGSLHLVGAFLN 292 (304)
Q Consensus 234 np-r-----~--~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~Vlv--aGSl~lv~~~~~ 292 (304)
+| | . .+.+++.+.... ..+..++|+++|++.+ .++ ++|+||+ +||+|+++..+.
T Consensus 388 ~~~~e~p~~g~~~~~l~~~~~~~~--~~~~~~~~~~~a~~~~--~a~-~gD~VLv~g~Gs~~~~~~~l~ 451 (469)
T 1j6u_A 388 YDAFEEKKNGISGKMIWDSLKSLG--KEAYFVEKLPELEKVI--SVS-ENTVFLFVGAGDIIYSSRRFV 451 (469)
T ss_dssp BC---------CHHHHHHHHHHTT--CCEEECCSGGGHHHHC--CCC-SSEEEEEECSSTHHHHHHHHH
T ss_pred CCCCCCcccCcCHHHHHHHHHhcC--CcEEEECCHHHHHHHh--hCC-CCCEEEEECCCchhHHHHHHH
Confidence 44 3 2 345555444321 2466778999999866 775 8999999 799999987664
No 14
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=99.91 E-value=5.6e-25 Score=217.62 Aligned_cols=215 Identities=11% Similarity=0.074 Sum_probs=150.0
Q ss_pred CCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccC---CceEEecCCCCCchHHHHHH
Q psy1839 69 KPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIAVTSANQRGPCKQILLE 145 (304)
Q Consensus 69 ~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~---~~~~V~~~~dd~~~~~~l~~ 145 (304)
++|++|+|+|++++ +...-+|+++|||||+.||+|+||+|+|+|+.+|++|++. ++.+|+|. |||.+..+++
T Consensus 170 ~~d~~VlE~~e~~~---s~~~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~~V~n~-dd~~~~~~~~- 244 (494)
T 4hv4_A 170 SSRYLIAEADESDA---SFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCI-DDPVVRELLP- 244 (494)
T ss_dssp SSSEEEEECCCGGG---GGGGCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCEEEEET-TSHHHHHHGG-
T ss_pred CCcEEEEEcccccc---ccccccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCEEEEEC-CCHHHHHHHH-
Confidence 47999999997643 2222359999999999999999966999999999999963 57899999 8888755443
Q ss_pred HHHhhCCeEEEeCCCc--c--------------ccc--C------------CC-------------------------cc
Q psy1839 146 TSRALNCVLLEAPSIL--N--------------YRW--R------------GQ-------------------------PL 170 (304)
Q Consensus 146 ~a~~~~~~~~~~~~~~--~--------------~~~--~------------~~-------------------------~l 170 (304)
..++++++|+... + |.+ . +. ++
T Consensus 245 ---~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~i~~~L 321 (494)
T 4hv4_A 245 ---RVGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLNAPGRHNALNAAAAVAVATEEGIEDEDILRAL 321 (494)
T ss_dssp ---GCCSCEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred ---hcCCCEEEEecCCCCceEEEEEEEeCCEEEEEEEECCceEEEEEecCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3345566655311 1 100 0 00 00
Q ss_pred --cccccCceeeee-----------CCceeccCCCCCCCcccc-cccCCC-CCC-C-----C--C---CchhH----Hhc
Q psy1839 171 --DEDWKNRFGVKL-----------DSRTAAPNGGHEPGRPNV-GQGGGG-FQS-R-----S--G---DNSIR----SNA 220 (304)
Q Consensus 171 --~~~~~GR~e~~~-----------~~~~v~vD~AHnp~al~~-l~~l~~-~~~-~-----~--~---d~~~r----~~~ 220 (304)
..++|||||++. +++.++.||||||+++++ +++|+. +++ | . + +++.. +.+
T Consensus 322 ~~f~g~~~R~e~v~~~~~~~~~~~~~g~~vi~DyaHnp~~i~a~l~al~~~~~~~rii~V~g~~~~~r~k~~~~~~~~~~ 401 (494)
T 4hv4_A 322 VGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPTEVDATIKAARAGWPDKRIVMLFQPHRYTRTRDLYDDFANVL 401 (494)
T ss_dssp HHCCCBTTSSEEEEEEESHHHHSCSSEEEEEEECCCSHHHHHHHHHHHHHHCTTSEEEEEECCBCHHHHHHTHHHHHHHH
T ss_pred HhCCCCCCccEEeeeccccccccCCCCeEEEEeCCCCHHHHHHHHHHHHhhcCCCeEEEEEcCCCCCchHHHHHHHHHHH
Confidence 146999999973 268899999999999999 988865 433 3 1 2 22221 122
Q ss_pred CCCCeEEEecCCCCcc------h--HHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEec--chhhHHHH
Q psy1839 221 NPLSSVDCHNVNDQSN------S--FHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTG--SLHLVGAF 290 (304)
Q Consensus 221 ~~~d~vi~T~~~dnpr------~--~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaG--Sl~lv~~~ 290 (304)
..+|.+|+|. ++|+ . .+.|++.+..... .++..++|+++|++++.+.++ ++|+||++| |++.++..
T Consensus 402 ~~aD~vilt~--~~~~~e~p~~g~~~~~l~~~~~~~g~-~~~~~~~~~~eAv~~a~~~a~-~gDvVL~~GaG~~~~~~~~ 477 (494)
T 4hv4_A 402 SQVDVLLMLD--VYAAGEPPIPGADSRALCRTIRNRGK-LDPILVPDSESAPEMLAQILN-GEDLILVQGAGNIGKIARK 477 (494)
T ss_dssp TTSSEEEEEC--CBCTTCCCCTTCSHHHHHHHHHTTTS-CCCEEECCTTTHHHHHHHHCC-TTEEEEEECSSTHHHHHHH
T ss_pred hcCCEEEEeC--CcCCccCCcCCccHHHHHHHHHhhCC-CCeEEeCCHHHHHHHHHHhCC-CCCEEEEECCCCHHHHHHH
Confidence 2389999996 5542 2 4666665554322 246678999999999999996 999999988 77777654
Q ss_pred -HHHhc
Q psy1839 291 -LNVLS 295 (304)
Q Consensus 291 -~~~l~ 295 (304)
++.|.
T Consensus 478 l~~~l~ 483 (494)
T 4hv4_A 478 LAEHKL 483 (494)
T ss_dssp HHHTTT
T ss_pred HHHHHc
Confidence 34444
No 15
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=99.91 E-value=3.7e-24 Score=209.29 Aligned_cols=199 Identities=14% Similarity=0.090 Sum_probs=145.9
Q ss_pred CCCCEEEEeecCCCccccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhccccC---CceEEecCCCCCchHHHHH
Q psy1839 68 EKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIAVTSANQRGPCKQILL 144 (304)
Q Consensus 68 ~~vd~aVlE~GlgGr~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~~---~~~~V~~~~dd~~~~~~l~ 144 (304)
.++|++|+|+|+++ ++.++.+ +|+++|||||+.||+++|| |+|+|+++|++||+. ++.+|+|. |||.+..+
T Consensus 159 ~~~d~~VlE~~s~~-l~~~~~~-~p~iaviTNI~~DHld~~g-t~e~i~~aK~~i~~~~~~~~~~V~n~-dd~~~~~~-- 232 (451)
T 3lk7_A 159 NDKDTLVMELSSFQ-LMGVKEF-RPHIAVITNLMPTHLDYHG-SFEDYVAAKWNIQNQMSSSDFLVLNF-NQGISKEL-- 232 (451)
T ss_dssp CTTCEEEEECCHHH-HTTCSSC-CCSEEEECCCCSCCHHHHS-SHHHHHHHHHGGGTTCCTTSEEEEET-TSHHHHHH--
T ss_pred CCCCEEEEECCccc-ccccccc-CCCEEEEcCCChhHhhhcC-CHHHHHHHHHHHHhcCCCCCEEEEEC-CcHHHHHH--
Confidence 47899999999865 5778777 4999999999999999999 999999999999974 56799999 88877443
Q ss_pred HHHHhhCCeEEEeCCCcc-----------------------cccCCC-------------------------cc--cccc
Q psy1839 145 ETSRALNCVLLEAPSILN-----------------------YRWRGQ-------------------------PL--DEDW 174 (304)
Q Consensus 145 ~~a~~~~~~~~~~~~~~~-----------------------~~~~~~-------------------------~l--~~~~ 174 (304)
++..++++++|+.+.. +++.+. ++ ..++
T Consensus 233 --~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~L~~f~~~ 310 (451)
T 3lk7_A 233 --AKTTKATIVPFSTTEKVDGAYVQDKQLFYKGENIMSVDDIGVPGSHNVENALATIAVAKLAGISNQVIRETLSNFGGV 310 (451)
T ss_dssp --HTTCSSEEEEEESSSCCSSEEEETTEEEETTEEEEEGGGSSSCSHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHCCCC
T ss_pred --HhhcCCeEEEEccCCCcCCEEEECCEEEECCcEEeeccccCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 4445667777764321 000010 01 1479
Q ss_pred cCceeeee--CCceeccC-CCCCCCcccc-cccCCC------CCCCCCCchhHHhc---CCCCeEEEecCCCCcchHHHH
Q psy1839 175 KNRFGVKL--DSRTAAPN-GGHEPGRPNV-GQGGGG------FQSRSGDNSIRSNA---NPLSSVDCHNVNDQSNSFHKI 241 (304)
Q Consensus 175 ~GR~e~~~--~~~~v~vD-~AHnp~al~~-l~~l~~------~~~~~~d~~~r~~~---~~~d~vi~T~~~dnpr~~~ii 241 (304)
|||||++. +++.++.| |+|||+|+++ |++++. +++..++++.++.+ ..+|.+|+++ . ..+.+
T Consensus 311 ~gR~e~v~~~~g~~vi~D~~a~np~a~~~al~~~~~~rii~I~g~~~r~~d~~~l~~~l~~~d~vi~~G-~----~~~~l 385 (451)
T 3lk7_A 311 KHRLQSLGKVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDRGNEFDELIPDITGLKHMVVLG-E----SASRV 385 (451)
T ss_dssp TTSSEEEEEETTEEEEECTTCCSHHHHHHHHHTSCGGGEEEEECCSCCSCCCGGGHHHHTTCSEEEECS-T----THHHH
T ss_pred CCcEEEEeeeCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEEEECCCCCCCCHHHHHHHHHhcCEEEEEC-C----CHHHH
Confidence 99999974 56789999 7999999999 887742 12224566666333 3389999997 3 23444
Q ss_pred HHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEec
Q psy1839 242 ATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTG 282 (304)
Q Consensus 242 ~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaG 282 (304)
++.+.... ..+..++|.++|++++.+.++ ++|+||++|
T Consensus 386 ~~~~~~~g--~~~~~~~~~~eAv~~a~~~a~-~gD~VLlsp 423 (451)
T 3lk7_A 386 KRAAQKAG--VTYSDALDVRDAVHKAYEVAQ-QGDVILLSP 423 (451)
T ss_dssp HHHHHHTT--CCEEECSSHHHHHHHHHHHCC-TTCEEEECC
T ss_pred HHHHHhcC--CceEEeCCHHHHHHHHHHhCC-CCCEEEEcC
Confidence 44443322 236778999999999999996 999999983
No 16
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=99.91 E-value=2.4e-24 Score=214.50 Aligned_cols=218 Identities=13% Similarity=0.137 Sum_probs=143.0
Q ss_pred CCCEEEEeecC--CCcccc-ccc--cCCCcEEEEcccchhhhhccCCCHHHHHHHHhcccc---CCceEEecCCCCCchH
Q psy1839 69 KPDAVIMEVGI--GGRYDN-TNI--IPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCK 140 (304)
Q Consensus 69 ~vd~aVlE~Gl--gGr~d~-tn~--~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~---~~~~~V~~~~dd~~~~ 140 (304)
++|++|+|++. .+..+. +.+ + +|+++|||||+.||+|+|| |+|+|+++|++||+ +++.+|+|. |||.+.
T Consensus 190 ~~~~~V~E~ss~~~~~~~~~~~~~~~-~P~iaViTNI~~DHLd~~g-s~e~y~~aK~~i~~~~~~~g~~VlN~-DD~~~~ 266 (524)
T 3hn7_A 190 NTGYFVIEADEYDSAFFDKRSKFVHY-RPRTAILNNLEFDHADIFA-DLDAIQTQFHHMVRMIPSTGKIIMPA-ATISLE 266 (524)
T ss_dssp CCCEEEEECCSCCCBTTBCCCHHHHC-CCSEEEECCCCCC-------CHHHHHHHHHHHHTTSCTTSEEEEES-SCHHHH
T ss_pred cCcEEEEECCCCCccccccccceeee-cCCEEEEcCCChHHccccC-CHHHHHHHHHHHHHhCCCCCEEEEEC-CCHHHH
Confidence 35799999997 232222 111 2 5999999999999999999 89999999999997 567899999 999876
Q ss_pred HHHHHHHHhhCCeEEEeCCC----------------------ccc--------------------------ccC--CC--
Q psy1839 141 QILLETSRALNCVLLEAPSI----------------------LNY--------------------------RWR--GQ-- 168 (304)
Q Consensus 141 ~~l~~~a~~~~~~~~~~~~~----------------------~~~--------------------------~~~--~~-- 168 (304)
.++... ..+++++|+.. .++ .+. +.
T Consensus 267 ~~~~~~---~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~g~~f~l~~~~~~~~~~~~~l~l~G~hn 343 (524)
T 3hn7_A 267 DTLAKG---VWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQFTVSFNDNKEATALVNWSMSGLHN 343 (524)
T ss_dssp HHHHTC---CCSCEEEEEEEC-------------------CCCSEEEEEEETTTTEEEEEETTEEEEEEEEECSCCSHHH
T ss_pred HHHHhc---cCCcEEEEecCcccccccccccccccccccCCCCcEEEEEEECCceEEEEEECCccceeEEEEeCCCcHHH
Confidence 554321 12233333320 000 000 00
Q ss_pred -----------------------cc--cccccCceeeee--CCceeccCCCCCCCcccc-cccCCCC-C-CC--------
Q psy1839 169 -----------------------PL--DEDWKNRFGVKL--DSRTAAPNGGHEPGRPNV-GQGGGGF-Q-SR-------- 210 (304)
Q Consensus 169 -----------------------~l--~~~~~GR~e~~~--~~~~v~vD~AHnp~al~~-l~~l~~~-~-~~-------- 210 (304)
.+ ..++|||||++. +++.+++||||||+++++ +++|+.+ + +|
T Consensus 344 ~~NalaA~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~g~~vi~D~ahnp~~~~a~l~~l~~~~~~~r~i~V~g~~ 423 (524)
T 3hn7_A 344 VNNALVAIAAAYNIGVSVKTACAALSAFAGIKRRMELIGDVNDILVFDDFAHHPTAITTTLDGAKKKLADRRLWAIIEPR 423 (524)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHTCCCBTTSSEEEEEETTEEEEEECCCSHHHHHHHHHHHHHHHTTSCEEEEEECC
T ss_pred HHhHHHHHHHHHHcCCCHHHHHHHHHhCCCCCceEEEEEecCCcEEEEECCCCHHHHHHHHHHHHhhcCCCCEEEEECCC
Confidence 01 146999999974 578999999999999999 9888653 2 22
Q ss_pred ---CCCchhH---HhcCC-CCeEEEecCCCCcch--HH-HHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEE
Q psy1839 211 ---SGDNSIR---SNANP-LSSVDCHNVNDQSNS--FH-KIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILV 280 (304)
Q Consensus 211 ---~~d~~~r---~~~~~-~d~vi~T~~~dnpr~--~~-ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~Vlv 280 (304)
+++++.. ..+.. +|.+|+|+ ++||. ++ +++++..+.....++.+++|+++|++++.+.++ ++|+|||
T Consensus 424 ~~~~~~g~~~~~~~~~~~~aD~vil~~--~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~eai~~~~~~a~-~gD~VLv 500 (524)
T 3hn7_A 424 SNTMKMGIHQDSLAQSATLADHTLWYE--PTGLEWGLKEVIDNATIANPSIGSQQVLSSVDDIIKHICTHAK-AGDAIVI 500 (524)
T ss_dssp CCSSCCSCCTTHHHHHTTTSSEEEEEC--CTTCCCSHHHHHHHHHHHCGGGCCEEEESCHHHHHHHHHHHCC-TTCEEEE
T ss_pred CcchhhhhhHHHHHHHHhcCCEEEEcC--CCCCCCCHHHHHHHHHhhccCCCCeEEECCHHHHHHHHHHhCC-CCCEEEE
Confidence 1333332 22234 89999997 77775 44 444443332223457789999999999999996 9999999
Q ss_pred ec--chhhHHH-HHHHhc
Q psy1839 281 TG--SLHLVGA-FLNVLS 295 (304)
Q Consensus 281 aG--Sl~lv~~-~~~~l~ 295 (304)
+| |++.++. +++.|+
T Consensus 501 ~GaG~~~~v~~~~~~~l~ 518 (524)
T 3hn7_A 501 MSNGGFEGIHQRLLTALG 518 (524)
T ss_dssp EESSCGGGHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHHHHH
Confidence 86 7887754 334443
No 17
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=99.50 E-value=8.6e-15 Score=124.20 Aligned_cols=116 Identities=15% Similarity=0.076 Sum_probs=78.6
Q ss_pred ccccCceeeee--CCceeccCCCCCCCcccc-cccCCC-CC-CC------C-----CCchhH----HhcCCCCeEEEecC
Q psy1839 172 EDWKNRFGVKL--DSRTAAPNGGHEPGRPNV-GQGGGG-FQ-SR------S-----GDNSIR----SNANPLSSVDCHNV 231 (304)
Q Consensus 172 ~~~~GR~e~~~--~~~~v~vD~AHnp~al~~-l~~l~~-~~-~~------~-----~d~~~r----~~~~~~d~vi~T~~ 231 (304)
.+++||||++. +++.++.||||||+++++ |++|+. |+ +| . |+++.. ..+..+|.+|+|+
T Consensus 22 ~gv~~R~E~i~~~~g~~vi~DyaHnP~si~a~l~al~~~~~~~riivvf~~g~~s~r~k~~~~~~~~~~~~aD~vi~~~- 100 (163)
T 3mvn_A 22 SNAQRRLEVKGVVNNITVYDDFAHHPTAITATIDALRAKVGQQRILAVLEPRSNTMKMGVHKHELATSLQDADSVFIYQ- 100 (163)
T ss_dssp -----CCEEEEEETTEEEEEECCCSHHHHHHHHHHHHHHHTTSCEEEEECCC---------CHHHHHHHTTCSEEEEEC-
T ss_pred CCCCCCeEEEecCCCcEEEEcCCCCHHHHHHHHHHHHHhcCCCcEEEEECCCCcchhhHHHHHHHHHHHhcCCEEEEEC-
Confidence 56899999984 578999999999999999 999975 44 33 1 444432 2222389999996
Q ss_pred CCCcch-HHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEecchhhHHHHHHHh
Q psy1839 232 NDQSNS-FHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVL 294 (304)
Q Consensus 232 ~dnpr~-~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~VlvaGSl~lv~~~~~~l 294 (304)
+ +. +.++++++.++. .++.+++|+++|++++.+.++ ++|+||++||.++-+-.-.++
T Consensus 101 ~---~~~~~~~~~~~~~~~--~~~~~~~d~~eai~~~~~~~~-~gDvVLv~Gsg~~~~~~~~l~ 158 (163)
T 3mvn_A 101 P---PTIEWQVSEVLANLA--QPAISADDVDELVMRIVQQAK-PNDHILIMSNGAFGGIHQKLL 158 (163)
T ss_dssp C-------CCHHHHHTTCC--SCEEEESSHHHHHHHHHHHCC-TTCEEEEECSSCGGGHHHHHH
T ss_pred C---CCcccCHHHHHhhCC--CCeEEECCHHHHHHHHHHhCC-CCCEEEEECCCCHHHHHHHHH
Confidence 2 22 224566666554 357789999999999999996 999999999988765444443
No 18
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=99.34 E-value=8e-13 Score=123.74 Aligned_cols=89 Identities=9% Similarity=0.107 Sum_probs=68.6
Q ss_pred hCCCCEEEEeecC--CCc----cccccccCCCcEEEEcccchhhhhccCCCHHHHHHHHhcccc---CCceEEecCCCCC
Q psy1839 67 KEKPDAVIMEVGI--GGR----YDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRG 137 (304)
Q Consensus 67 ~~~vd~aVlE~Gl--gGr----~d~tn~~~~~~vaviTnIg~DHl~~lG~Tle~Ia~~Ka~I~~---~~~~~V~~~~dd~ 137 (304)
..+++++|+|+|+ .+. .+...+ +|+++|||||+.||+|+|| |+|+|+++|++||+ +++.+|+|. ||+
T Consensus 163 ~~~~~~~V~E~ss~~~~~~~~~~~~~~~--~P~vaviTNI~~DHLd~~g-s~e~y~~aK~~i~~~~~~~~~~V~n~-Dd~ 238 (326)
T 3eag_A 163 NSQSPFFVIEADEYDTAFFDKRSKFVHY--RPRTAVLNNLEFDHADIFA-DLGAIQTQFHYLVRTVPSEGLIVCNG-RQQ 238 (326)
T ss_dssp TSCCCEEEEECCCSEEETTEEEEGGGGS--CCSEEEECCCCCCCTTTSS-SHHHHHHHHHHHHTTSCTTSEEEEES-SCH
T ss_pred CCCCCEEEEEccccccchhhcccceeEe--cCCEEEECCCcHHHHhhcC-CHHHHHHHHHHHHHhCCCCCEEEEeC-CCH
Confidence 3478999999997 222 222333 5899999999999999999 99999999999997 578999999 998
Q ss_pred chHHHHHHHHHhhCCeEEEeCCCcc
Q psy1839 138 PCKQILLETSRALNCVLLEAPSILN 162 (304)
Q Consensus 138 ~~~~~l~~~a~~~~~~~~~~~~~~~ 162 (304)
.+.+++.. ...+++++|+...+
T Consensus 239 ~~~~~~~~---~~~~~~~~~g~~~d 260 (326)
T 3eag_A 239 SLQDTLDK---GCWTPVEKFGTEHG 260 (326)
T ss_dssp HHHHHHTT---CCCSCEEEESSSSS
T ss_pred HHHHHHhh---ccCCCEEEECCCCc
Confidence 87655432 13456778875433
No 19
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=38.75 E-value=40 Score=24.72 Aligned_cols=17 Identities=12% Similarity=0.528 Sum_probs=11.9
Q ss_pred eeecCCCCCCCcceeEE
Q psy1839 3 RFFSSPHLIEVRERIKL 19 (304)
Q Consensus 3 G~ftSPhl~~~~ERi~i 19 (304)
|.||+|-+........+
T Consensus 14 g~~~~~~~~~~~~~~~l 30 (100)
T 2lv7_A 14 GIYTVPNLLSEQRPVDI 30 (100)
T ss_dssp SCCSCSSTTTTCSCCCC
T ss_pred ccccCchhhhhcccccC
Confidence 67888888877665443
No 20
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=35.85 E-value=61 Score=26.27 Aligned_cols=49 Identities=10% Similarity=-0.083 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcCCC-CcEEEeCCHHHHHHHHhh--cCCCCCcEEEEecchhh
Q psy1839 238 FHKIATVASALSQR-SKVVEFSSVLDTYNFKYG--LDPSKEYHILVTGSLHL 286 (304)
Q Consensus 238 ~~ii~~~~~g~~~~-~~~~~~~dr~~AI~~a~~--~a~~~~d~VlvaGSl~l 286 (304)
...|++.+...+.. ....+++|..+.|..++. .+...-|+|+.+|-++.
T Consensus 42 g~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 42 GDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 34677776665442 234567898888888876 33224599999998763
No 21
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=34.50 E-value=86 Score=22.69 Aligned_cols=50 Identities=2% Similarity=0.023 Sum_probs=34.1
Q ss_pred eeCCHHHHHHHHH-------HHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHhCCCC
Q psy1839 22 EPISYDKFTKYFW-------TVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPD 71 (304)
Q Consensus 22 ~~i~~~~~~~~~~-------~v~~~~~~~~~~~~~~~s~fE~~t~~A~~~f~~~~vd 71 (304)
..|+.+++.+++. ++...++..+....+..++=|+..+|.+..++++|..
T Consensus 26 G~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g~~ 82 (99)
T 1qjt_A 26 GRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLVACAQNGLE 82 (99)
T ss_dssp SCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHHHHHTTTCC
T ss_pred CcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHcCCC
Confidence 4577777776653 2333344444445678999999999998888887653
No 22
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=32.73 E-value=22 Score=29.39 Aligned_cols=48 Identities=13% Similarity=-0.103 Sum_probs=31.6
Q ss_pred HHHHHHHh---hcCCCCcEEEeCCHHHHHHHHhhcCCC--CCcEEEEecchhh
Q psy1839 239 HKIATVAS---ALSQRSKVVEFSSVLDTYNFKYGLDPS--KEYHILVTGSLHL 286 (304)
Q Consensus 239 ~ii~~~~~---g~~~~~~~~~~~dr~~AI~~a~~~a~~--~~d~VlvaGSl~l 286 (304)
..++..+. ..+..-...+++|..++|..++..+-. .-|+|+++|-.+.
T Consensus 28 ~~l~~~l~~l~~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~ 80 (178)
T 2pbq_A 28 KAIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGP 80 (178)
T ss_dssp HHHHHHHHHHBCSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 45666555 333322455788988888888776521 4699999997654
No 23
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=31.87 E-value=64 Score=26.12 Aligned_cols=49 Identities=4% Similarity=-0.058 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcCCC-CcEEEeCCHHHHHHHHhhcCCC--CCcEEEEecchhh
Q psy1839 238 FHKIATVASALSQR-SKVVEFSSVLDTYNFKYGLDPS--KEYHILVTGSLHL 286 (304)
Q Consensus 238 ~~ii~~~~~g~~~~-~~~~~~~dr~~AI~~a~~~a~~--~~d~VlvaGSl~l 286 (304)
...+++.+...+.. ....+++|..++|..++..+-. .-|+|+++|-.+.
T Consensus 33 ~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~ 84 (169)
T 1y5e_A 33 GQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGI 84 (169)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSS
T ss_pred HHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCC
Confidence 34566665544332 2345678988888888876522 4599999997754
No 24
>1knv_A BSE634I restriction endonuclease; APO-enzyme, hydrolase; 2.17A {Geobacillus stearothermophilus} SCOP: c.52.1.7 PDB: 3v1z_A* 3v20_A* 3v21_A*
Probab=30.74 E-value=60 Score=29.18 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=42.0
Q ss_pred CeeCCHHHHHHHHHHHHHHHHHhhhcCCCC-C----------ChhHHHHHHH-HHHHHhCCC-CEEEEeecCCCcccccc
Q psy1839 21 GEPISYDKFTKYFWTVYNALHAKRKHAEDM-P----------AYFKFLTVMS-FYVFVKEKP-DAVIMEVGIGGRYDNTN 87 (304)
Q Consensus 21 g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~-~----------s~fE~~t~~A-~~~f~~~~v-d~aVlE~GlgGr~d~tn 87 (304)
|.-|+..+|.+++.+++.-.....+..+.. | .+||++.+++ +.++++.+. +++|+++-=---+|.++
T Consensus 35 ~~~iP~~~isd~l~~~~n~~~~~~~~~~~~i~~~~A~~k~~Gdw~E~l~A~~~wN~~a~~~~~~~~vv~LPN~rsfD~~~ 114 (293)
T 1knv_A 35 HHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRK 114 (293)
T ss_dssp SSSCCCSBHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECCCTTTSCGGG
T ss_pred hccCCCccHHHHHHHHHHHHHHHHHHhcCCCCchhhhhhcCCcHHHHHHHHHHHHhhccCCCceEEEEECCCCCCccHHH
Confidence 455555567777777765432221111222 2 5799876665 667778888 99999997211147766
Q ss_pred ccC
Q psy1839 88 IIP 90 (304)
Q Consensus 88 ~~~ 90 (304)
++.
T Consensus 115 L~~ 117 (293)
T 1knv_A 115 IFD 117 (293)
T ss_dssp GBC
T ss_pred Hhh
Confidence 653
No 25
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=29.92 E-value=90 Score=22.71 Aligned_cols=40 Identities=3% Similarity=0.160 Sum_probs=28.1
Q ss_pred eeCCHHHHHHHHHH--------------HHHHHHHhhhcCCCCCChhHHHHHHH
Q psy1839 22 EPISYDKFTKYFWT--------------VYNALHAKRKHAEDMPAYFKFLTVMS 61 (304)
Q Consensus 22 ~~i~~~~~~~~~~~--------------v~~~~~~~~~~~~~~~s~fE~~t~~A 61 (304)
..|+.++|..++.. +...+++.+....+..+|=|++.+++
T Consensus 28 G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~ 81 (98)
T 3n22_A 28 FKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLA 81 (98)
T ss_dssp TSBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHH
T ss_pred CeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 48999999987753 33444455544567889988888775
No 26
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=28.89 E-value=56 Score=26.89 Aligned_cols=49 Identities=10% Similarity=-0.151 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCC-CcEEEeCCHHHHHHHHhhcCCCC--CcEEEEecchhh
Q psy1839 238 FHKIATVASALSQR-SKVVEFSSVLDTYNFKYGLDPSK--EYHILVTGSLHL 286 (304)
Q Consensus 238 ~~ii~~~~~g~~~~-~~~~~~~dr~~AI~~a~~~a~~~--~d~VlvaGSl~l 286 (304)
...++..+...... ....+++|..++|..++..+-.. -|+|+++|-.+.
T Consensus 42 ~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s~ 93 (178)
T 2pjk_A 42 GDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 44566666655432 23446788888888887654213 599999997654
No 27
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=26.84 E-value=76 Score=25.83 Aligned_cols=49 Identities=12% Similarity=-0.007 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCCC-CcEEEeCCHHHHHHHHhhcCCC--CCcEEEEecchhh
Q psy1839 238 FHKIATVASALSQR-SKVVEFSSVLDTYNFKYGLDPS--KEYHILVTGSLHL 286 (304)
Q Consensus 238 ~~ii~~~~~g~~~~-~~~~~~~dr~~AI~~a~~~a~~--~~d~VlvaGSl~l 286 (304)
...+++.+...+.. ....+++|..++|..++..+-. .-|+|+++|-.+.
T Consensus 30 ~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~ 81 (172)
T 1mkz_A 30 GHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGL 81 (172)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSS
T ss_pred HHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 45677766655432 2345678888888888776521 2699999997754
No 28
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=25.35 E-value=56 Score=27.46 Aligned_cols=48 Identities=6% Similarity=-0.132 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCCC---CcEEEeCCHHHHHHHHhhcCCC--CCcEEEEecchhh
Q psy1839 239 HKIATVASALSQR---SKVVEFSSVLDTYNFKYGLDPS--KEYHILVTGSLHL 286 (304)
Q Consensus 239 ~ii~~~~~g~~~~---~~~~~~~dr~~AI~~a~~~a~~--~~d~VlvaGSl~l 286 (304)
..|++.+...... ....+++|..++|..++..+-. .-|+|+.+|-.+.
T Consensus 26 ~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg~ 78 (195)
T 1di6_A 26 PALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGP 78 (195)
T ss_dssp HHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred HHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 4556655544332 3455678888888877765421 3599999997764
No 29
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=24.66 E-value=51 Score=24.97 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=24.3
Q ss_pred hhhhhccC---CCHHHHHHHHhccccCCceEEecCCCCCch
Q psy1839 102 YDHTAVLG---NTIEEITMQKAGIMKPNCIAVTSANQRGPC 139 (304)
Q Consensus 102 ~DHl~~lG---~Tle~Ia~~Ka~I~~~~~~~V~~~~dd~~~ 139 (304)
.||+.+++ .|+|+|.++|..-++.+..-+.-. |.|+.
T Consensus 51 aDnLgwF~d~~~~IEdil~~kGe~V~~~~~d~~~e-d~pe~ 90 (100)
T 2e2z_A 51 ADHLKIFHDHHVTVEQLMKANGEQVSQDVGDLEFE-DIPDS 90 (100)
T ss_dssp CCSSCSGGGSCCCHHHHHHHHCCCCSSSSCEEEES-SCCHH
T ss_pred ehhhhhhccCCCCHHHHHHHcCCEeeecCCCccHh-hChHH
Confidence 47776664 389999999999997643222223 44544
No 30
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Probab=24.63 E-value=1.3e+02 Score=21.41 Aligned_cols=41 Identities=7% Similarity=0.219 Sum_probs=27.6
Q ss_pred CCeeCCHHHHHHHHHH--------------HHHHHHHhhhcCCCCCChhHHHHHHH
Q psy1839 20 NGEPISYDKFTKYFWT--------------VYNALHAKRKHAEDMPAYFKFLTVMS 61 (304)
Q Consensus 20 ng~~i~~~~~~~~~~~--------------v~~~~~~~~~~~~~~~s~fE~~t~~A 61 (304)
|| .|+.++|..++.. +...++..+....+..+|=|++.+++
T Consensus 22 dg-~Is~~El~~~l~~~~~~~lg~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~ 76 (96)
T 1a4p_A 22 KG-YLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIA 76 (96)
T ss_dssp GC-SBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTTSSSCBCHHHHHHHHH
T ss_pred CC-eECHHHHHHHHHHHcccccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 56 8999999888754 23334444444567788888887765
No 31
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=23.40 E-value=1.4e+02 Score=22.50 Aligned_cols=39 Identities=3% Similarity=0.140 Sum_probs=28.0
Q ss_pred eCCHHHHHHHHHH--------------HHHHHHHhhhcCCCCCChhHHHHHHH
Q psy1839 23 PISYDKFTKYFWT--------------VYNALHAKRKHAEDMPAYFKFLTVMS 61 (304)
Q Consensus 23 ~i~~~~~~~~~~~--------------v~~~~~~~~~~~~~~~s~fE~~t~~A 61 (304)
.|+.++|..++.. +...+++.+....+..+|=|++.+++
T Consensus 40 ~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~dgdG~Idf~EF~~~m~ 92 (113)
T 2lnk_A 40 KLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLS 92 (113)
T ss_dssp CBCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCSSSSSCBCHHHHHHHHH
T ss_pred EECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 7999999988753 34455555544567889988887765
No 32
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=23.13 E-value=93 Score=21.91 Aligned_cols=49 Identities=10% Similarity=0.007 Sum_probs=31.0
Q ss_pred eeCCHHHHHHHHHHH-------HHHHHHhhhcCCCCCChhHHHHHHHHHHHHhCCC
Q psy1839 22 EPISYDKFTKYFWTV-------YNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKP 70 (304)
Q Consensus 22 ~~i~~~~~~~~~~~v-------~~~~~~~~~~~~~~~s~fE~~t~~A~~~f~~~~v 70 (304)
..|+.+++..++... ...++..+....+..++=|++.++.....+.+|.
T Consensus 24 G~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g~ 79 (92)
T 1fi6_A 24 GFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVVARKNGY 79 (92)
T ss_dssp CEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHHHHSC
T ss_pred CcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 367888887776432 2333333333456789999999987766665554
No 33
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=22.67 E-value=1.5e+02 Score=21.13 Aligned_cols=40 Identities=3% Similarity=0.104 Sum_probs=28.1
Q ss_pred eeCCHHHHHHHHHH--------------HHHHHHHhhhcCCCCCChhHHHHHHH
Q psy1839 22 EPISYDKFTKYFWT--------------VYNALHAKRKHAEDMPAYFKFLTVMS 61 (304)
Q Consensus 22 ~~i~~~~~~~~~~~--------------v~~~~~~~~~~~~~~~s~fE~~t~~A 61 (304)
..|+.++|..++.. +...+++.+....+..+|=|++.+++
T Consensus 27 G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~ 80 (93)
T 4eto_A 27 FKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLS 80 (93)
T ss_dssp TSBCHHHHHHHHHHHCGGGC---CCHHHHHHHHHHHCTTSSSSBCHHHHHHHHH
T ss_pred CeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHH
Confidence 47999999887753 33444555555677889989888775
No 34
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=22.59 E-value=2.3e+02 Score=20.69 Aligned_cols=52 Identities=12% Similarity=-0.013 Sum_probs=30.7
Q ss_pred eEEEecCCCCcchHHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCCCCCcEEEEe
Q psy1839 225 SVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVT 281 (304)
Q Consensus 225 ~vi~T~~~dnpr~~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~~~~d~Vlva 281 (304)
.|++.+ |++-..+.+...+...+....+....+.++|++..... +-|+|++-
T Consensus 7 ~ILivd--d~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~---~~dlii~D 58 (144)
T 3kht_A 7 RVLVVE--DNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQA---KYDLIILD 58 (144)
T ss_dssp EEEEEC--CCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTC---CCSEEEEC
T ss_pred EEEEEe--CCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcC---CCCEEEEe
Confidence 355554 66655566666666554443466677888888776431 23666664
No 35
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=22.01 E-value=2.3e+02 Score=20.52 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=35.5
Q ss_pred eEEEecCCCCcchHHHHHHHHhhcCCCCcEEEeCCHHHHHHHHhhcCC---CCCcEEEEecc
Q psy1839 225 SVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDP---SKEYHILVTGS 283 (304)
Q Consensus 225 ~vi~T~~~dnpr~~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~~~a~---~~~d~VlvaGS 283 (304)
.|++.+ |++...+.+...+...+....+....+.++|++...+... ..-|+|++--.
T Consensus 9 ~ILivd--d~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~ 68 (143)
T 2qvg_A 9 DILYLE--DDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDIN 68 (143)
T ss_dssp SEEEEC--CCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETT
T ss_pred eEEEEe--CCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecC
Confidence 455554 6776666666666655444467778999999988764210 12477777533
No 36
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=20.05 E-value=2.7e+02 Score=20.54 Aligned_cols=42 Identities=10% Similarity=0.188 Sum_probs=28.8
Q ss_pred eEEEecCCCCcchHHHHHHHHhhcCCCCcEEEeCCHHHHHHHHh
Q psy1839 225 SVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKY 268 (304)
Q Consensus 225 ~vi~T~~~dnpr~~~ii~~~~~g~~~~~~~~~~~dr~~AI~~a~ 268 (304)
.|++.+ |++...+.+...+...+....+..+.+.++|++...
T Consensus 6 ~ILivd--dd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~ 47 (152)
T 3heb_A 6 TIVMIE--DDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLF 47 (152)
T ss_dssp EEEEEC--CCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHH
T ss_pred eEEEEe--CCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHh
Confidence 455654 777666667777666555446777888888888774
Done!