RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1839
(304 letters)
>gnl|CDD|215476 PLN02881, PLN02881, tetrahydrofolylpolyglutamate synthase.
Length = 530
Score = 191 bits (487), Expect = 6e-57
Identities = 74/169 (43%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 2 TRFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMS 61
T F+SPHLI+VRER +L+G IS +KF +YFW ++ L K MPAYF+FLT+++
Sbjct: 90 TGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCWDRLKEKTTEDLPMPAYFRFLTLLA 149
Query: 62 FYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAG 121
F +F E+ D I+EVG+GGR D TN++ V GITSLGYDH +LG+T+ +I +KAG
Sbjct: 150 FKIFSAEQVDVAILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTLGKIAGEKAG 209
Query: 122 IMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPL 170
I KP A T Q ++L E + L L + +Y G L
Sbjct: 210 IFKPGVPAFTVP-QPDEAMRVLEERASELGVPLQVVEPLDSYGLSGLKL 257
Score = 36.9 bits (86), Expect = 0.011
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 272 PSKEYHILVTGSLHLVGAFLNVL 294
PS + +LVTGSLHLVG L +L
Sbjct: 506 PSLRFQVLVTGSLHLVGDVLRLL 528
>gnl|CDD|223362 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].
Length = 427
Score = 175 bits (446), Expect = 7e-52
Identities = 64/178 (35%), Positives = 90/178 (50%), Gaps = 8/178 (4%)
Query: 5 FSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYV 64
++SPHL+ ERI++NGEPIS ++ F V A YF+ LT M+F
Sbjct: 76 YTSPHLLSFNERIRINGEPISDEELAAAFERVEEA---AGSLDLISLTYFEVLTAMAFLY 132
Query: 65 FVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK 124
F + K D I+EVG+GGR D TN+I V ITS+G DHTA LG+T+E I +KAGI+K
Sbjct: 133 FAEAKVDVAILEVGLGGRLDATNVIEP-DVSVITSIGLDHTAFLGDTLESIAREKAGIIK 191
Query: 125 PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKNRFGVKL 182
AV Q ++ E + L L +L ++ + + G L
Sbjct: 192 AGKPAVIGEQQPPEALNVIAERAEELGAPL----FVLGPDFQVLEEGNGFSFQGGGGL 245
Score = 29.2 bits (66), Expect = 2.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 278 ILVTGSLHLVGAFL 291
+LVTGSL+L G L
Sbjct: 405 VLVTGSLYLAGEVL 418
>gnl|CDD|233440 TIGR01499, folC, folylpolyglutamate synthase/dihydrofolate
synthase. This model represents the FolC family of
folate pathway proteins. Most examples are bifunctional,
active as both folylpolyglutamate synthetase (EC
6.3.2.17) and dihydrofolate synthetase (EC 6.3.2.12).
The two activities are similar - ATP + glutamate +
dihydropteroate or tetrahydrofolyl-[Glu](n) = ADP +
orthophosphate + dihydrofolate or
tetrahydrofolyl-[Glu](n+1). A mutation study of the FolC
gene of E. coli suggests that both activities belong to
the same active site. Because some examples are
monofunctional (and these cannot be separated
phylogenetically), the model is treated as subfamily,
not equivalog [Biosynthesis of cofactors, prosthetic
groups, and carriers, Folic acid].
Length = 398
Score = 164 bits (418), Expect = 6e-48
Identities = 62/184 (33%), Positives = 91/184 (49%), Gaps = 7/184 (3%)
Query: 4 FFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFY 63
F+SPHL+ ERI++NGEPIS ++ + F V L K P YF+ LT+++F
Sbjct: 49 LFTSPHLVSFNERIRINGEPISDEELAQAFEQVRPIL----KKLSQQPTYFELLTLLAFL 104
Query: 64 VFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM 123
F + + D ++EVG+GGR D TN+I V ITS+G DHT +LG+T+EEI +KAGI+
Sbjct: 105 YFAQAQVDVAVLEVGLGGRLDATNVIE-PLVSVITSIGLDHTEILGDTLEEIAWEKAGII 163
Query: 124 KPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKNRFGVKLD 183
K VT Q +L + ++ L NY +
Sbjct: 164 KEGVPIVT-GPQEPEALNVLKKKAQEKGAPLFVVGRDFNY-SETDENYLSFSGANLFLEP 221
Query: 184 SRTA 187
+
Sbjct: 222 LALS 225
Score = 34.2 bits (79), Expect = 0.074
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 270 LDPSKEYHILVTGSLHLVGAFLNVL 294
+ S E ILVTGSL+LVG +L
Sbjct: 374 KEASAEDDILVTGSLYLVGEVRKLL 398
>gnl|CDD|178501 PLN02913, PLN02913, dihydrofolate synthetase.
Length = 510
Score = 95.3 bits (237), Expect = 5e-22
Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 4/130 (3%)
Query: 5 FSSPHLIEVRERIKLN--GEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSF 62
++SPHL +RERI + G+P+S + F + L + +F+ LT ++F
Sbjct: 107 YTSPHLRSIRERISVGKLGKPVSTNTLNDLFHGIKPILDEAIQLENGSLTHFEVLTALAF 166
Query: 63 YVFVKEKPDAVIMEVGIGGRYDNTNIIPNT--AVVGITSLGYDHTAVLGNTIEEITMQKA 120
+F +E D ++E G+GG D TN+I ++ A IT++G +H A LG ++E I + K+
Sbjct: 167 KLFAQENVDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKS 226
Query: 121 GIMKPNCIAV 130
GI+K V
Sbjct: 227 GIIKQGRPVV 236
Score = 30.2 bits (68), Expect = 1.3
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 269 GLDPSKEYHILVTGSLHLVGAFLNVLS 295
LDPS + VTGSLH+V A L L
Sbjct: 485 TLDPSSV--VCVTGSLHIVSAVLASLQ 509
>gnl|CDD|182774 PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/
dihydrofolate synthase; Provisional.
Length = 416
Score = 87.8 bits (218), Expect = 1e-19
Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 7/126 (5%)
Query: 5 FSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYV 64
+SSPHL+ ER+++ G+ + T F + A R + YF++ T+ + ++
Sbjct: 81 YSSPHLVRYTERVRIQGQELPESAHTASF----AEIEAAR--GDISLTYFEYGTLSALWL 134
Query: 65 FVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK 124
F + + D VI+EVG+GGR D TNI+ + V +TS+ DHT LG E I +KAGI +
Sbjct: 135 FKQAQLDVVILEVGLGGRLDATNIV-DADVAVVTSIALDHTDWLGPDRESIGREKAGIFR 193
Query: 125 PNCIAV 130
AV
Sbjct: 194 AEKPAV 199
>gnl|CDD|219763 pfam08245, Mur_ligase_M, Mur ligase middle domain.
Length = 178
Score = 29.2 bits (66), Expect = 2.0
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 15/79 (18%)
Query: 61 SFYVFVKEKPDAVIMEVG----IGGRYDNTNIIPNTAVVGITSLGYDHTAVLGN--TIEE 114
+ K+ D ++E+ GR + P+ AV IT++ DH L T+E
Sbjct: 39 LLALMPKKGADYAVLELSSFGLGEGRLEGLA-KPDIAV--ITNISPDH---LDYHGTMEN 92
Query: 115 ITMQKAGI---MKPNCIAV 130
KA I + + IAV
Sbjct: 93 YAAAKAEIFEGLPEDGIAV 111
>gnl|CDD|189541 pfam00426, VP4_haemagglut, Outer Capsid protein VP4
(Hemagglutinin).
Length = 776
Score = 29.8 bits (67), Expect = 2.3
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 209 SRSGDNSIRSNANPLSS-VDCHN-VNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNF 266
S S +SIRS + S D + + D SNS + I+T S +S++ ++ EF++ + NF
Sbjct: 574 SVSRSSSIRSVGSTASVWTDVSDQLTDVSNSVNDISTQTSTISRKLRLKEFATQTEGMNF 633
>gnl|CDD|178988 PRK00364, groES, co-chaperonin GroES; Reviewed.
Length = 95
Score = 27.4 bits (62), Expect = 2.8
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 67 KEKPD-AVIMEVGIGGRYDNTNIIPNTAVVG 96
KEKP ++ VG G R DN +P VG
Sbjct: 32 KEKPQEGEVVAVGPGRRLDNGERVPLDVKVG 62
>gnl|CDD|223312 COG0234, GroS, Co-chaperonin GroES (HSP10) [Posttranslational
modification, protein turnover, chaperones].
Length = 96
Score = 27.1 bits (61), Expect = 4.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 67 KEKPD-AVIMEVGIGGRYDNTNIIPNTAVVG 96
KEKP ++ VG G R +N ++P VG
Sbjct: 32 KEKPQEGEVVAVGPGRRDENGELVPLDVKVG 62
>gnl|CDD|217032 pfam02436, PYC_OADA, Conserved carboxylase domain. This domain
represents a conserved region in pyruvate carboxylase
(PYC), oxaloacetate decarboxylase alpha chain (OADA),
and transcarboxylase 5s subunit. The domain is found
adjacent to the HMGL-like domain (pfam00682) and often
close to the biotin_lipoyl domain (pfam00364) of biotin
requiring enzymes.
Length = 198
Score = 27.9 bits (63), Expect = 6.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 259 SVLDTYNFKYGLDPSKEYHILV 280
SVL T F YG++ +EY + V
Sbjct: 168 SVLPTPVFFYGMEVGEEYSVEV 189
>gnl|CDD|197951 smart00883, Cpn10, Chaperonin 10 Kd subunit. The chaperonins are
'helper' molecules required for correct folding and
subsequent assembly of some proteins. These are
required for normal cell growth, and are
stress-induced, acting to stabilise or protect
disassembled polypeptides under heat-shock conditions.
Type I chaperonins present in eubacteria, mitochondria
and chloroplasts require the concerted action of 2
proteins, chaperonin 60 (cpn60) and chaperonin 10
(cpn10). The 10 kDa chaperonin (cpn10 - or groES in
bacteria) exists as a ring-shaped oligomer of between
six to eight identical subunits, while the 60 kDa
chaperonin (cpn60 - or groEL in bacteria) forms a
structure comprising 2 stacked rings, each ring
containing 7 identical subunits. These ring structures
assemble by self-stimulation in the presence of
Mg2+-ATP. The central cavity of the cylindrical cpn60
tetradecamer provides as isolated environment for
protein folding whilst cpn-10 binds to cpn-60 and
synchronizes the release of the folded protein in an
Mg2+-ATP dependent manner. The binding of cpn10 to
cpn60 inhibits the weak ATPase activity of cpn60.
Length = 93
Score = 26.2 bits (59), Expect = 8.5
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 67 KEKPD-AVIMEVGIGGRYDNTNIIPNTAVVG 96
KEKP ++ VG G R +N +P VG
Sbjct: 31 KEKPQEGEVVAVGPGKRLENGERVPLDVKVG 61
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.398
Gapped
Lambda K H
0.267 0.0876 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,143,753
Number of extensions: 1413997
Number of successful extensions: 1109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1100
Number of HSP's successfully gapped: 17
Length of query: 304
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 208
Effective length of database: 6,679,618
Effective search space: 1389360544
Effective search space used: 1389360544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.2 bits)