RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1839
(304 letters)
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166,
structural genomics, JC protein structure initiative;
2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Length = 442
Score = 176 bits (450), Expect = 2e-52
Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 2/168 (1%)
Query: 5 FSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYV 64
+ SPHL RERI+LN E IS + K + T+ L+ K P++F+ +T M+F
Sbjct: 84 YYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLY 143
Query: 65 FVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK 124
F ++ D ++EVG+GGR D TN++ I ++ DH LG TIE+I +K+GI+K
Sbjct: 144 FAEKNVDIAVLEVGLGGRLDATNVV-FPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIK 202
Query: 125 PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDE 172
VT ++ +++ + +R + + + + + L E
Sbjct: 203 ERVPLVT-GERKREALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHE 249
Score = 27.5 bits (62), Expect = 5.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 278 ILVTGSLHLVGAFLNVLSN 296
+VTGSL LVG L+
Sbjct: 415 TVVTGSLFLVGYVREFLTT 433
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex,
ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei}
SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A
2gc5_A* 2gc6_A* 2gcb_A
Length = 428
Score = 174 bits (444), Expect = 1e-51
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
Query: 5 FSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHA-KRKHAEDMPAYFKFLTVMSFY 63
++SP ++ ERI ++ EPI V AL +++ A+ F+F+T ++++
Sbjct: 71 YTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYW 130
Query: 64 VFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM 123
F + + D ++EVGIGG D+TN+I V +T + DH +LG+TI I KAGI+
Sbjct: 131 YFRQRQVDVAVIEVGIGGDTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHKAGII 189
Query: 124 KPNCIAVTSANQRGPCKQILLETSRALNCVLLEA 157
K VT N ++ L
Sbjct: 190 KRGIPVVT-GNLVPDAAAVVAAKVATTGSQWLRF 222
Score = 28.3 bits (64), Expect = 3.0
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 242 ATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVLSNYDS 299
A + + S + L+ + I++TGSL+L A L S
Sbjct: 373 ALPEAGYEALHEGRLKDSWQEAL--AASLNDVPDQPIVITGSLYLASAVRQTLLGGKS 428
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan
synthesis, cell division; HET: ADP; 2.0A {Mycobacterium
tuberculosis} PDB: 2vor_A*
Length = 487
Score = 164 bits (416), Expect = 4e-47
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 19/184 (10%)
Query: 5 FSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA-------YFKFL 57
+SPHL ERI ++G+PIS ++ + + + + ++ F+ L
Sbjct: 96 TTSPHLQSPVERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVL 155
Query: 58 TVMSFYVFVKEKPDAVIMEVGIGGRYDNTNII-PNTAVVGITSLGYDHTAVLGNTIEEIT 116
T M+F F D ++EVG+GGR+D TN+I AV IT + DH LG I I
Sbjct: 156 TAMAFAAFADAPVDVAVVEVGMGGRWDATNVINAPVAV--ITPISIDHVDYLGADIAGIA 213
Query: 117 MQKAGIMK------PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPL 170
+KAGI+ P+ +AV Q ++LL S + + S + + +
Sbjct: 214 GEKAGIITRAPDGSPDTVAVI-GRQVPKVMEVLLAESVRADASVAREDS--EFAVLRRQI 270
Query: 171 DEDW 174
Sbjct: 271 AVGG 274
Score = 30.3 bits (69), Expect = 0.79
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 239 HKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVL 294
+ A+ + +V+ ++ I++TGS+ GA +
Sbjct: 431 RTAENLRDAIDVATSLVDDAAADPDVAGDAFSRT----GIVITGSVVTAGAARTLF 482
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase,
ATP-binding, folate biosynthesis, ligase,
multifunctional enzyme; HET: KCX PD8 ADP; 1.82A
{Escherichia coli} PDB: 1w7k_A*
Length = 422
Score = 161 bits (410), Expect = 8e-47
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 16/181 (8%)
Query: 5 FSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA-YFKFLTVMSFY 63
+SSPHL+ ER+++ G+ + T F + D+ YF++ T+ + +
Sbjct: 81 YSSPHLVRYTERVRVQGQELPESAHTASFAEI-------ESARGDISLTYFEYGTLSALW 133
Query: 64 VFVKEKPDAVIMEVGIGGRYDNTNII-PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGI 122
+F + + D VI+EVG+GGR D TNI+ + AV +TS+ DHT LG E I +KAGI
Sbjct: 134 LFKQAQLDVVILEVGLGGRLDATNIVDADVAV--VTSIALDHTDWLGPDRESIGREKAGI 191
Query: 123 MKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKNRFGVKL 182
+ A+ + + + ++ +L NY + + G
Sbjct: 192 FRSEKPAIVGEPE---MPSTIADVAQEKGALLQRRGVEWNYSVTDHDW--AFSDAHGTLE 246
Query: 183 D 183
+
Sbjct: 247 N 247
Score = 32.1 bits (74), Expect = 0.24
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 278 ILVTGSLHLVGAFLNVLSN 296
+LV GS H V + V+
Sbjct: 398 VLVCGSFHTVAHVMEVIDA 416
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A*
3pyz_A* 3qcz_A*
Length = 437
Score = 161 bits (410), Expect = 1e-46
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 14/155 (9%)
Query: 5 FSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA-YFKFLTVMSFY 63
+SSPHL+ ER+++ G+ +S + + F + D+ YF+F T+ +
Sbjct: 84 YSSPHLLRYTERVRIQGQELSEAEHSHSFAQI-------EAGRGDISLTYFEFGTLSALQ 136
Query: 64 VFVKEKPDAVIMEVGIGGRYDNTNII-PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGI 122
+F + K D VI+EVG+GGR D TNI+ + A ITS+ DHT LG E I +KAG+
Sbjct: 137 LFKQAKLDVVILEVGLGGRLDATNIVDSDVAA--ITSIALDHTDWLGYDRESIGREKAGV 194
Query: 123 MKPNCIAVTSANQRGPCKQILLETSRALNCVLLEA 157
+ AV Q + + + L L
Sbjct: 195 FRGGKPAVVGEPD---MPQSIADVAAELGAQLYRR 226
Score = 32.5 bits (75), Expect = 0.14
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 278 ILVTGSLHLVGAFLNVL 294
++V GS H V + L
Sbjct: 419 VIVCGSFHTVAHVMAAL 435
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.087
Identities = 34/161 (21%), Positives = 50/161 (31%), Gaps = 38/161 (23%)
Query: 37 YNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAV-IMEVGIGGRYDNTNIIPNTAVV 95
Y A + +FK S V P + I G G+ N
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN-------- 1687
Query: 96 GITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETS---RALNC 152
Y A++ TI + ++ I K TS R K +L T AL
Sbjct: 1688 ------YS--AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE-KGLLSATQFTQPAL-- 1736
Query: 153 VLLEAPSILNYRWRGQPLDEDWKNRFGVKLDSRTAAPNGGH 193
L+E + ED K++ + D+ A GH
Sbjct: 1737 TLMEK-AAF----------EDLKSKGLIPADATFA----GH 1762
Score = 27.3 bits (60), Expect = 7.3
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 17/49 (34%)
Query: 2 TRF------FSSPHLIEVRERIK--LNGEPISYD----KFTKYFWTVYN 38
RF F S L+ + I L +S++ + VY+
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI-----PVYD 461
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.15
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 24/99 (24%)
Query: 224 SSVDCHNVNDQSNSFHKIATVASALSQRSKVVEF----SSVLDTYNFKYGLDPSKE---- 275
S V+ + + S I L + K+ S++D YN D
Sbjct: 415 SLVEKQP-KESTISIPSIY-----LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 276 ----------YHILVTGSLHLVGAFLNVLSNYDSVSSKV 304
+H+ + F V ++ + K+
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas
sobria} PDB: 3hjr_A
Length = 600
Score = 28.0 bits (61), Expect = 5.4
Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 2/102 (1%)
Query: 159 SILNYRWRGQPLDEDWKNRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRS 218
+ N+ +R +D N R G + G GF + + +
Sbjct: 172 RVFNHSYRMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGGYVLN 231
Query: 219 NANPLSSVDCHNVN-DQSNSFHKIATVASALSQRSKVVEFSS 259
+ N N D SNS V SAL+ +SS
Sbjct: 232 RTGNGPKLPFENSNLDPSNSNFWNLVV-SALNADGVRSSYSS 272
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, JOI for
structural genomics, JCSG; 2.12A {Bacteroides fragilis
nctc 9343}
Length = 430
Score = 27.3 bits (60), Expect = 6.8
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 32 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPN 91
YF + N R++ P ++K + + D G R D I P
Sbjct: 281 YFNEMRNLTLVNREYCIRNPKHYKGYGPDCWGLTASYSVDGYAAH-GPLERDDRGVISP- 338
Query: 92 TAVVGITSLGYDHTAVLGN 110
TA + S+ Y L
Sbjct: 339 TAALS--SIVYTPDQSLQV 355
>3nzb_X Dihydrofolate reductase; pneumocystius carinii DHFR inhibitor
complexes, oxidoreducta oxidoreductase-oxidoreductase
inhibitor complex; HET: D2N NAP; 1.45A {Pneumocystis
carinii} PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A*
1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 3nz6_X*
3nz9_X* 3nza_X* 2fzi_A* 3nzc_X* 3td8_A* 4cd2_A* 1vj3_A*
Length = 206
Score = 26.6 bits (59), Expect = 8.5
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 48 EDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGR 82
+++ +YFK +T E + V+M GR
Sbjct: 31 KEI-SYFKRVTSFVPTFDSFESMNVVLM-----GR 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.398
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,557,774
Number of extensions: 266492
Number of successful extensions: 589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 579
Number of HSP's successfully gapped: 16
Length of query: 304
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 211
Effective length of database: 4,105,140
Effective search space: 866184540
Effective search space used: 866184540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)