RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1839
         (304 letters)



>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase,
           C-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 137

 Score = 31.4 bits (70), Expect = 0.051
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 9/67 (13%)

Query: 228 CHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLV 287
               + +    + +  +A    +  +V+E    L+          S E   +VTGSL LV
Sbjct: 69  TRVPSPRMKDMNSLVDMAKKFFKNVEVIE--DPLEAIE-------STERATVVTGSLFLV 119

Query: 288 GAFLNVL 294
           G     L
Sbjct: 120 GYVREFL 126


>d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase,
           C-terminal domain {Lactobacillus casei [TaxId: 1582]}
          Length = 129

 Score = 30.6 bits (68), Expect = 0.084
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 266 FKYGLDPSKEYHILVTGSLHLVGAFLNVL 294
               L+   +  I++TGSL+L  A    L
Sbjct: 99  LAASLNDVPDQPIVITGSLYLASAVRQTL 127


>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 93

 Score = 27.2 bits (60), Expect = 0.98
 Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 13/55 (23%)

Query: 12 EVRERIKLNGEPISYDKFTKYFWTVYNALHA-------------KRKHAEDMPAY 53
          E R+ ++     I++ +  K     + AL               K+++  +   Y
Sbjct: 34 ENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88


>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 325

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 26  YDKFTKYFWTVYNALHAKRKHAEDMPAY---FKFLTVMSFYVFVKEKP-DAVIMEVGIGG 81
            ++   Y+  V   L        + P       + T  +F + +     D  I  +  GG
Sbjct: 228 NEESKAYYEQVKAYLDDLGIPYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGG 287

Query: 82  RYDN 85
           RY+ 
Sbjct: 288 RYNG 291


>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
           subunit HisZ {Thermotoga maritima [TaxId: 2336]}
          Length = 275

 Score = 25.5 bits (55), Expect = 7.4
 Identities = 5/26 (19%), Positives = 8/26 (30%), Gaps = 4/26 (15%)

Query: 60  MSFYVFVKEKPDAVIMEVGIGGRYDN 85
           + F ++       V      GG Y  
Sbjct: 237 LIFTIYDTSSSRLV----AAGGEYTV 258


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0457    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,106,108
Number of extensions: 50265
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 6
Length of query: 304
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,240,546
Effective search space: 271679574
Effective search space used: 271679574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)