BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1841
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 46/71 (64%)
Query: 82 PCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERGLV 141
P VAGVVG KMPR+ LFGDTVNTASRMES GEA +IHIS + + L + ERG +
Sbjct: 112 PVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIHISEACYXCLRSKERFEIRERGNI 171
Query: 142 QIKVSNVERGW 152
+K R +
Sbjct: 172 TVKGKGTMRTY 182
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 46/71 (64%)
Query: 82 PCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERGLV 141
P VAGVVG KMPR+ LFGDTVNTASRMES GEA +IHIS + + L + ERG +
Sbjct: 112 PVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIHISEACYCCLRSKERFEIRERGNI 171
Query: 142 QIKVSNVERGW 152
+K R +
Sbjct: 172 TVKGKGTMRTY 182
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
pdb|1AB8|B Chain B, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
Length = 220
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 80 HRPCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERG 139
H P +AGV+G + P+Y ++G+TVN ASRM+S+G KI ++ T +L+ L GY C RG
Sbjct: 132 HGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTL-GYTCTCRG 190
Query: 140 LVQIK 144
++ +K
Sbjct: 191 IINVK 195
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 208
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 80 HRPCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERG 139
H P +AGV+G + P+Y ++G+TVN ASRM+S+G KI ++ T +L+ L GY C RG
Sbjct: 129 HGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTL-GYTCTCRG 187
Query: 140 LVQIK 144
++ +K
Sbjct: 188 IINVK 192
>pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1CJK|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1TL7|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
pdb|1U0H|B Chain B, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|B Chain B, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|B Chain B, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 212
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 80 HRPCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERG 139
H P +AGV+G + P+Y ++G+TVN ASRM+S+G KI ++ T +L+ L GY C RG
Sbjct: 133 HGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTL-GYTCTCRG 191
Query: 140 LVQIK 144
++ +K
Sbjct: 192 IINVK 196
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 82 PCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERGLV 141
P VAGVVG + RYC++GD VN ASRMES+ +I + +E L+ + ERG +
Sbjct: 112 PVVAGVVGSRRFRYCVWGDAVNVASRMESTDSVGQIQVPDEVYERLKD--DFVLRERGHI 169
Query: 142 QIKVSNVERGW 152
+K V R W
Sbjct: 170 NVKGKGVMRTW 180
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 84 VAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELL----EKLGGYYCEERG 139
V GV+G +MPRYCLFG+TVN SR E++GE KI++S T+ L ++ E RG
Sbjct: 122 VTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRG 181
Query: 140 LVQIK 144
V +K
Sbjct: 182 PVSMK 186
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 84 VAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELL----EKLGGYYCEERG 139
V GV+G +MPRY LFG+TVN SR E++GE KI++S T+ L ++ E RG
Sbjct: 123 VTGVIGQRMPRYSLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRG 182
Query: 140 LVQIK 144
V +K
Sbjct: 183 PVSMK 187
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 225
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 85 AGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEER 138
AGVVG+KMPRYCLFG+ V A++ ES KI++S +T+ LL+ G+ R
Sbjct: 119 AGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPR 172
>pdb|3R5G|A Chain A, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
pdb|3R5G|B Chain B, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
Length = 198
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 95 YCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERGLVQIK 144
Y + G VN ASR+ES+ EA +I IS T+ L++ + C ++G + +K
Sbjct: 132 YTIIGREVNLASRLESASEAGEILISHETYSLIKDV--IMCRDKGQIAVK 179
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 86 GVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCE 136
GV+GL+ ++ ++ + V A+ ME+ G+A +IHI+ +T L G Y E
Sbjct: 132 GVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLN--GDYEVE 180
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 86 GVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCE 136
GV+GL+ ++ ++ + V A+ ME+ G+A +IHI+ +T L G Y E
Sbjct: 140 GVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLN--GDYEVE 188
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 86 GVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELL 127
GV+GL+ ++ ++ + V A+ ME+ G+A +IHI+ +T L
Sbjct: 140 GVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYL 181
>pdb|3MR7|A Chain A, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
pdb|3MR7|B Chain B, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
pdb|3MR7|C Chain C, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
Length = 189
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 97 LFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERGLVQIKVSNVER-----G 151
+FGD VN A+R+E+ E I +S ++ + + GL KV N+ R
Sbjct: 112 IFGDAVNVAARLEAISEPGAICVSDIVHQITQDRVSEPFTDLGLQ--KVKNITRPIRVWQ 169
Query: 152 WCPDG 156
W PD
Sbjct: 170 WVPDA 174
>pdb|1QZR|A Chain A, Crystal Structure Of The Atpase Region Of Saccharomyces
Cerevisiae Topoisomerase Ii Bound To Icrf-187
(Dexrazoxane)
pdb|1QZR|B Chain B, Crystal Structure Of The Atpase Region Of Saccharomyces
Cerevisiae Topoisomerase Ii Bound To Icrf-187
(Dexrazoxane)
Length = 418
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 22 YEQKLLCLLWKVEYKDITIIPILNNEFDETTQECASTPPLSPSLVRASVILYGKE 76
Y+++ C++ K ++TI+P L FDE A PS+ R V ++ +E
Sbjct: 47 YDEETDCMIEK----NVTIVPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEE 97
>pdb|4GFH|F Chain F, Topoisomerase Ii-Dna-Amppnp Complex
Length = 1099
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 22 YEQKLLCLLWKVEYKDITIIPILNNEFDETTQECASTPPLSPSLVRASVILYGKE 76
Y+++ C++ K++TI+P L FDE A PS+ R V ++ +E
Sbjct: 36 YDEETDCMI----EKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEE 86
>pdb|4GFH|A Chain A, Topoisomerase Ii-Dna-Amppnp Complex
Length = 1103
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 22 YEQKLLCLLWKVEYKDITIIPILNNEFDETTQECASTPPLSPSLVRASVILYGKE 76
Y+++ C++ K++TI+P L FDE A PS+ R V ++ +E
Sbjct: 36 YDEETDCMI----EKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEE 86
>pdb|1PVG|A Chain A, Crystal Structure Of The Atpase Region Of Saccharomyces
Cerevisiae Topoisomerase Ii
pdb|1PVG|B Chain B, Crystal Structure Of The Atpase Region Of Saccharomyces
Cerevisiae Topoisomerase Ii
Length = 418
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 36 KDITIIPILNNEFDETTQECASTPPLSPSLVRASVILYGKE 76
K++TI+P L FDE A PS R V ++ +E
Sbjct: 57 KNVTIVPGLFKIFDEILVNAADNKVRDPSXKRIDVNIHAEE 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,790,973
Number of Sequences: 62578
Number of extensions: 177641
Number of successful extensions: 281
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 18
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)