Query psy1841
Match_columns 156
No_of_seqs 141 out of 1472
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 17:42:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1841.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1841hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3619|consensus 100.0 9.9E-29 2.1E-33 225.3 9.1 138 17-155 675-841 (867)
2 KOG4171|consensus 100.0 6E-29 1.3E-33 220.5 7.1 144 12-155 465-618 (671)
3 PF00211 Guanylate_cyc: Adenyl 99.9 3.7E-25 8E-30 168.8 6.9 122 35-156 61-184 (184)
4 KOG3618|consensus 99.9 1.1E-24 2.5E-29 194.7 5.5 149 6-156 1077-1270(1318)
5 KOG1023|consensus 99.9 4.9E-22 1.1E-26 173.3 8.3 144 12-156 319-474 (484)
6 KOG3619|consensus 99.8 1.9E-21 4.1E-26 177.8 3.4 133 4-138 104-268 (867)
7 cd07302 CHD cyclase homology d 99.8 3.6E-18 7.8E-23 127.2 9.3 118 35-153 54-176 (177)
8 COG2114 CyaA Adenylate cyclase 99.8 2E-18 4.4E-23 137.6 7.9 110 35-155 99-214 (227)
9 KOG3618|consensus 99.7 6.8E-18 1.5E-22 151.7 4.4 120 35-156 393-526 (1318)
10 smart00044 CYCc Adenylyl- / gu 99.6 7.2E-16 1.6E-20 118.8 6.4 95 35-129 89-187 (194)
11 cd07556 Nucleotidyl_cyc_III Cl 96.8 0.0015 3.2E-08 45.8 3.7 46 71-117 87-132 (133)
12 KOG2716|consensus 27.8 13 0.00027 30.2 -1.2 37 5-41 48-93 (230)
13 PF02142 MGS: MGS-like domain 21.2 2.6E+02 0.0056 18.6 4.6 34 101-137 2-35 (95)
14 PF10655 DUF2482: Hypothetical 21.1 60 0.0013 22.7 1.3 33 75-114 44-76 (100)
No 1
>KOG3619|consensus
Probab=99.95 E-value=9.9e-29 Score=225.25 Aligned_cols=138 Identities=25% Similarity=0.376 Sum_probs=120.5
Q ss_pred hhhhhhHHHHH----HhhcccceeeEEeeccCChHHHHHHHHhhcCCCCCcc----ceeee-------------------
Q psy1841 17 VGHYRYEQKLL----CLLWKVEYKDITIIPILNNEFDETTQECASTPPLSPS----LVRAS------------------- 69 (156)
Q Consensus 17 ~~~~r~~~~~~----~l~~~~~y~~v~gi~~~~~~~~~~~~~~~~~~~~~~~----~lr~~------------------- 69 (156)
++++|.+||++ +|+.++.|..|+||||.+.+||+|++........... ...++
T Consensus 675 lECLRlLNEIIaDFDeLL~~pkF~~IEKIKTIGSTYMAAsGL~~~~~~~~~~~~~~~~h~~~l~eFAlal~~~L~~IN~~ 754 (867)
T KOG3619|consen 675 LECLRLLNEIIADFDELLSKPKFSGVEKIKTIGSTYMAASGLNPTSAQENDQSLRQWSHLGALVEFALALMHKLDEINRH 754 (867)
T ss_pred chHHHHHHHHHhhHHHhcCccccccceeEEEecchhhhhhCCChhhhhccCcchhHHhhHHHHHHHHHHHHHHHHhhhHH
Confidence 67899999999 8999999999999999999999988765544222211 01111
Q ss_pred --EEecceeeeeeccEEEEEeCCccccccccCchHHHHHhhhhcCCccEEEecHHHHHHhhhcCceEEEEcceEEecCcC
Q psy1841 70 --VILYGKEMCYHRPCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERGLVQIKVSN 147 (156)
Q Consensus 70 --v~~~~riGihtG~vv~G~vG~~~~~y~v~Gd~VN~AsRLe~~a~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~vkG~~ 147 (156)
-.+++||||++|||++|++|.++|+||+||+|||+||||++++.+|+|+|||+|...+...+ |.|+.+|.+.+|||+
T Consensus 755 SfNnF~LrIGin~GpvvAGVIGArKPqYDIWGNTVNvASRMdSTGv~g~IQVTEEt~~iL~~~g-y~~~~RG~i~VKGkG 833 (867)
T KOG3619|consen 755 SFNNFELRIGINHGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGVPGRIQVTEETANILQGLG-YRFECRGVINVKGKG 833 (867)
T ss_pred hhccceeeeceeccceeeeEecCCCCCccccccchhhhhcccccCCCCeEEecHHHHHHHhcCC-eeEEecceEEEeccc
Confidence 34788999999999999999999999999999999999999999999999999999999865 999999999999999
Q ss_pred CeEEEEEc
Q psy1841 148 VERGWCPD 155 (156)
Q Consensus 148 ~~~~~~l~ 155 (156)
++.||+|.
T Consensus 834 el~Tyfl~ 841 (867)
T KOG3619|consen 834 ELETYFLC 841 (867)
T ss_pred ceeEEEec
Confidence 99999985
No 2
>KOG4171|consensus
Probab=99.95 E-value=6e-29 Score=220.49 Aligned_cols=144 Identities=34% Similarity=0.426 Sum_probs=123.1
Q ss_pred ceeeehhhhhhHHHHH--Hhhcccc-----eeeEEeeccCChHHHHHHHHhhcCCCCCcccee---eeEEecceeeeeec
Q psy1841 12 HVKVEVGHYRYEQKLL--CLLWKVE-----YKDITIIPILNNEFDETTQECASTPPLSPSLVR---ASVILYGKEMCYHR 81 (156)
Q Consensus 12 ~~~~~~~~~r~~~~~~--~l~~~~~-----y~~v~gi~~~~~~~~~~~~~~~~~~~~~~~~lr---~~v~~~~riGihtG 81 (156)
-|++|.+-|.=+|+++ .-++|++ ||.|.|+|...+.|++.+..+|..+-.....+- .+-++++|||||||
T Consensus 465 vV~~LN~lyt~fD~~i~~~~VYKVETIGDaYm~vsG~P~~~~~HAe~i~~~AL~Mm~~ak~v~~p~~~~pi~iRiGIHsG 544 (671)
T KOG4171|consen 465 VVNMLNELYTRFDRIIDTHDVYKVETIGDAYMVVSGLPDASDYHAEHIADLALGMMEEAKEVVSPVTGEPIQIRIGIHSG 544 (671)
T ss_pred HHHHHHHHHHHHHHhhcccCeEEEeeccchheeecCCCCCChhHHHHHHHHHHHHHHHhhhhcCcCCCCceEEEEEeccC
Confidence 3566666677777777 3456666 999999999999999999998876322222111 35577888999999
Q ss_pred cEEEEEeCCccccccccCchHHHHHhhhhcCCccEEEecHHHHHHhhhcCceEEEEcceEEecCcCCeEEEEEc
Q psy1841 82 PCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERGLVQIKVSNVERGWCPD 155 (156)
Q Consensus 82 ~vv~G~vG~~~~~y~v~Gd~VN~AsRLe~~a~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~vkG~~~~~~~~l~ 155 (156)
||++|+||...|.|++||||||+|||||+.+.|++|+||+.|++.+...+.|.|+|+|++++||++.+.||||.
T Consensus 545 ~VvAGVVG~kmPRYCLFGdTVn~AsrmES~s~p~KI~vS~~T~~~l~~~~~f~f~pRg~v~vk~kg~m~tyFL~ 618 (671)
T KOG4171|consen 545 PVVAGVVGVKMPRYCLFGDTVNLASRMESSSVPGKINVSPTTYRKLKKQGSFEFEPRGRVEVKGKGPMETYFLE 618 (671)
T ss_pred CeeeeeecccccceeecCCchhhhhhhhcCCCCceEEeCHHHHHHHHhCCCceeeecCccccCCCCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999985
No 3
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=99.91 E-value=3.7e-25 Score=168.76 Aligned_cols=122 Identities=25% Similarity=0.301 Sum_probs=100.6
Q ss_pred eeeEEeeccCChHHHHHHHHhhcCCCCCcccee--eeEEecceeeeeeccEEEEEeCCccccccccCchHHHHHhhhhcC
Q psy1841 35 YKDITIIPILNNEFDETTQECASTPPLSPSLVR--ASVILYGKEMCYHRPCVAGVVGLKMPRYCLFGDTVNTASRMESSG 112 (156)
Q Consensus 35 y~~v~gi~~~~~~~~~~~~~~~~~~~~~~~~lr--~~v~~~~riGihtG~vv~G~vG~~~~~y~v~Gd~VN~AsRLe~~a 112 (156)
+++++|.|....+....+..++.........+. ....+++|||||+|++++|.+|..+++|++||++||.|+||++.+
T Consensus 61 ~~~~f~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~rIGI~~G~v~~g~~G~~~~~~~v~G~~vn~Aarl~~~a 140 (184)
T PF00211_consen 61 VMAVFGLPEPDEDAAERAVQFALALLEALERLNKESGPPLSVRIGIHTGPVVVGVVGSRRPEYDVFGDAVNIAARLESLA 140 (184)
T ss_dssp EEEEESSSSCHCHHHHHHHHHHHHHHHHHHHHHHHHHSS-EEEEEEEEEEEEEEEEESSSEEEEEESHHHHHHHHHHHTS
T ss_pred eEEEeccccccccccccccccccchhhcccccccccceeeeeeccccccccccccccCcccceeeeehhhhhhHHHHHhh
Confidence 899999997777777777666654222111111 134567788999999999999977999999999999999999999
Q ss_pred CccEEEecHHHHHHhhhcCceEEEEcceEEecCcCCeEEEEEcC
Q psy1841 113 EAFKIHISSSTFELLEKLGGYYCEERGLVQIKVSNVERGWCPDG 156 (156)
Q Consensus 113 ~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~vkG~~~~~~~~l~g 156 (156)
++++|+||+++++.+.....|.++++|.+.+||++++++|+|.|
T Consensus 141 ~~~~i~vs~~v~~~l~~~~~~~~~~~g~~~lkG~~~~~~y~~~~ 184 (184)
T PF00211_consen 141 PPGQILVSEEVYDALNESDQFRFEELGRVELKGKGPVQTYQLNG 184 (184)
T ss_dssp STTSEEEEHHHHHHHTTHTTEEEEEEEEEEETTSSEEEEEEEE-
T ss_pred cccccccCHHHHHHhcccCceEEEEeeeEEEecCCCcEEEEEEC
Confidence 99999999999999994445999999999999999999999987
No 4
>KOG3618|consensus
Probab=99.90 E-value=1.1e-24 Score=194.75 Aligned_cols=149 Identities=24% Similarity=0.315 Sum_probs=123.5
Q ss_pred EEeeccceeeehhhh------------------hhHHHHH----HhhcccceeeEEeeccCChHHHHHHHHhhc--CCCC
Q psy1841 6 YLKRSHHVKVEVGHY------------------RYEQKLL----CLLWKVEYKDITIIPILNNEFDETTQECAS--TPPL 61 (156)
Q Consensus 6 ~~~~~~~~~~~~~~~------------------r~~~~~~----~l~~~~~y~~v~gi~~~~~~~~~~~~~~~~--~~~~ 61 (156)
|-+-||++-|++..+ |-+||++ +|+.+++|..|++|||++.+||++.+.-.. .+.+
T Consensus 1077 YSeNH~~~gviFASIvNfnemYeEnyeGGkEflRVLNElIGDFDELLsrPdf~~iEKIKTIG~tyMAASGLnp~~~~~~~ 1156 (1318)
T KOG3618|consen 1077 YSENHDSGGVIFASIVNFNEMYEENYEGGKEFLRVLNELIGDFDELLSRPDFSSIEKIKTIGATYMAASGLNPAQAQDGS 1156 (1318)
T ss_pred ccccCccceEEEEEeccHHHHHHHhhhchHHHHHHHHHHhccHHHHhccccchhhHHHhhhhHHHHHhcCCChHHccCCC
Confidence 566778888877554 7788888 999999999999999999999986644221 1111
Q ss_pred Ccc-ceee--------------------eEEecceeeeeeccEEEEEeCCccccccccCchHHHHHhhhhcCCccEEEec
Q psy1841 62 SPS-LVRA--------------------SVILYGKEMCYHRPCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHIS 120 (156)
Q Consensus 62 ~~~-~lr~--------------------~v~~~~riGihtG~vv~G~vG~~~~~y~v~Gd~VN~AsRLe~~a~~~~I~vS 120 (156)
++. .+.+ -..+.+|+|++.|||.+|++|..+.-||+||||||+||||.+++.+++|+||
T Consensus 1157 hp~EHl~~l~eFa~amq~Vvd~FN~dlL~Fnf~lrvG~NiGpvTAGVIGTtKLyYDIWGDtVNiASRMdsTGv~nRIQVs 1236 (1318)
T KOG3618|consen 1157 HPQEHLQILFEFAKAMQRVVDDFNNDLLWFNFKLRVGFNIGPVTAGVIGTTKLYYDIWGDTVNIASRMDSTGVENRIQVS 1236 (1318)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhhheeeeEEeeccccCccccccccceeeehhhcchhhhhhhccccCCcceeEec
Confidence 221 1111 0346678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCceEEEEcceEEecCcCCeEEEEEcC
Q psy1841 121 SSTFELLEKLGGYYCEERGLVQIKVSNVERGWCPDG 156 (156)
Q Consensus 121 ~~t~~~l~~~~~~~~~~~g~~~vkG~~~~~~~~l~g 156 (156)
++++..+.+. |.|+++|.+.+||++++.||...+
T Consensus 1237 ~~~~~~L~~r--YeFe~Rg~v~VKGkd~M~tyLy~~ 1270 (1318)
T KOG3618|consen 1237 EESYRVLSKR--YEFEYRGTVNVKGKDQMKTYLYPK 1270 (1318)
T ss_pred HHHHHHHHhh--ccccccceEEEeccCcceeEEecc
Confidence 9999999976 999999999999999999998753
No 5
>KOG1023|consensus
Probab=99.86 E-value=4.9e-22 Score=173.33 Aligned_cols=144 Identities=38% Similarity=0.466 Sum_probs=117.3
Q ss_pred ceeeehhhhhhHHHHH--Hhhcccc-----eeeEEeeccCChH-HHHHHHHhhcC----CCCCccceeeeEEecceeeee
Q psy1841 12 HVKVEVGHYRYEQKLL--CLLWKVE-----YKDITIIPILNNE-FDETTQECAST----PPLSPSLVRASVILYGKEMCY 79 (156)
Q Consensus 12 ~~~~~~~~~r~~~~~~--~l~~~~~-----y~~v~gi~~~~~~-~~~~~~~~~~~----~~~~~~~lr~~v~~~~riGih 79 (156)
-|+++.+.|.-+|.++ ...+|++ |++++|+|..++. |+..+..++.. ......+-+-...+++|||+|
T Consensus 319 vv~~lNdlyt~Fd~ii~~~d~yKVetiGDaYmvvSglp~~n~~~H~~eia~msl~~~~~~~~f~i~H~P~~~l~iRig~~ 398 (484)
T KOG1023|consen 319 VVTLLNDLYTTFDRIIDKHDVYKVETIGDAYMVVSGLPIRNGYRHAREIASMALGLRSFLESFSLPHRPWEKLRLRIGFH 398 (484)
T ss_pred eeeeccchHHhhhhcccccCCeeEeccCcceeecccCceecHhHHHHHHHHHHHHHHHHHhccCCCCCCchhhheeeccc
Confidence 5788899999999999 5556666 9999999999886 45544444433 111111222233456677889
Q ss_pred eccEEEEEeCCccccccccCchHHHHHhhhhcCCccEEEecHHHHHHhhhcCceEEEEcceEEecCcCCeEEEEEcC
Q psy1841 80 HRPCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERGLVQIKVSNVERGWCPDG 156 (156)
Q Consensus 80 tG~vv~G~vG~~~~~y~v~Gd~VN~AsRLe~~a~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~vkG~~~~~~~~l~g 156 (156)
+|++++|++|...|.|++||||||+|+|||+.+. +.|++|+++.+.+...++|..+.+|.+.+||++...||||.|
T Consensus 399 sg~~~agVvgl~mPRYclFgDtvn~AsrMes~G~-~~i~~s~~~~~~l~~~~~~~~e~rG~v~~kgkg~~~t~wl~g 474 (484)
T KOG1023|consen 399 SGPVVAGVVGLKMPRYCLFGDTVNTASRMESNGK-LMIHLSEEAKNLLTERPQFETEERGLVELKGKGVMSTYWLLG 474 (484)
T ss_pred cCCceecccccCCCcccchhhHHHHHhhhhhcCC-eEEEecHHHHHHHHhcCceeeeccCcEEeecCceeeeEEecc
Confidence 9999999999999999999999999999999999 999999999999976557999999999999999999999986
No 6
>KOG3619|consensus
Probab=99.83 E-value=1.9e-21 Score=177.82 Aligned_cols=133 Identities=22% Similarity=0.298 Sum_probs=118.3
Q ss_pred EEEEeeccceeeehhhh----------------hhHHHHH-----------Hhhcccc---eeeEEeeccCChHHHHHHH
Q psy1841 4 IVYLKRSHHVKVEVGHY----------------RYEQKLL-----------CLLWKVE---YKDITIIPILNNEFDETTQ 53 (156)
Q Consensus 4 ~~~~~~~~~~~~~~~~~----------------r~~~~~~-----------~l~~~~~---y~~v~gi~~~~~~~~~~~~ 53 (156)
-+|+|||++|++++.++ +-+||++ |+..|.. |+||+|.|....+|+..+.
T Consensus 104 ~iy~~~h~nVSIl~adivgft~l~s~~saqelv~~LneLf~rfd~lA~~~~clRiKiLGdcyyCvsglp~~~~dHA~~~v 183 (867)
T KOG3619|consen 104 KLYIQRHDNVSILFADIVGFTQLASQCSAQELVKVLNELFARFDRLAAENHCLRIKILGDCYYCVSGLPEARPDHAVCCV 183 (867)
T ss_pred hhheeeccchHhhHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcceEeeeeecceeEEecCCCCCChhHHHHHH
Confidence 37999999999999998 7888888 6666655 9999999999999999999
Q ss_pred HhhcCCCCCccce--eeeEEecceeeeeeccEEEEEeCCccccccccCchHHHHHhhhhcCCccEEEecHHHHHHhhhcC
Q psy1841 54 ECASTPPLSPSLV--RASVILYGKEMCYHRPCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLG 131 (156)
Q Consensus 54 ~~~~~~~~~~~~l--r~~v~~~~riGihtG~vv~G~vG~~~~~y~v~Gd~VN~AsRLe~~a~~~~I~vS~~t~~~l~~~~ 131 (156)
++...+...-..+ .-+++++||||||||+|.+|++|..+.+||||++.|.+|.+||+.+.||++|+|++|.+.|...
T Consensus 184 ~mgl~Mi~aI~~vr~at~~dvnmrvGihsG~Vl~GvlG~~kwq~DVws~dv~lAn~mEs~G~pgrVhis~~Tl~~L~g~- 262 (867)
T KOG3619|consen 184 EMGLDMIKAIKQVREATGVDVNMRVGIHSGSVLCGVLGLRKWQYDVWSNDVTLANHMEAGGVPGRVHISKATLDCLNGE- 262 (867)
T ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEEecCceeecccccceeeeeeccchhhhhhhhhhcCCCceeEechhHHHHhCCC-
Confidence 9888766555544 4467899999999999999999999999999999999999999999999999999999999854
Q ss_pred ceEEEEc
Q psy1841 132 GYYCEER 138 (156)
Q Consensus 132 ~~~~~~~ 138 (156)
|.+++-
T Consensus 263 -yeve~g 268 (867)
T KOG3619|consen 263 -YEVEPG 268 (867)
T ss_pred -ceeecC
Confidence 888775
No 7
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=99.76 E-value=3.6e-18 Score=127.23 Aligned_cols=118 Identities=30% Similarity=0.336 Sum_probs=97.7
Q ss_pred eeeEEeeccCChHHHHHHHHhhcCCCCCccce----eeeEEecceeeeeeccEEEEEeCCccccccccCchHHHHHhhhh
Q psy1841 35 YKDITIIPILNNEFDETTQECASTPPLSPSLV----RASVILYGKEMCYHRPCVAGVVGLKMPRYCLFGDTVNTASRMES 110 (156)
Q Consensus 35 y~~v~gi~~~~~~~~~~~~~~~~~~~~~~~~l----r~~v~~~~riGihtG~vv~G~vG~~~~~y~v~Gd~VN~AsRLe~ 110 (156)
++++++.|....+....+..++.+........ .....+++|||||+|++++|.+|..+..|++||++||+|+||++
T Consensus 54 ~~~~f~~~~~~~~~~~~A~~~a~~i~~~~~~~~~~~~~~~~~~~riGi~~G~~~~g~~g~~~~~~~~~G~~v~~A~rl~~ 133 (177)
T cd07302 54 VMAVFGLPGAHEDHAERAVRAALEMQEALAELNAEREGGPPLRLRIGIHTGPVVAGVVGSERPEYTVIGDTVNLAARLES 133 (177)
T ss_pred EEEEeCCCCCchhHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEecceEEEEecCCCCcceeEecchHhHHHHHHh
Confidence 89999999988888888888777633222211 23345677889999999999999999999999999999999999
Q ss_pred cCCccEEEecHHHHHHhhhcCceEEEEcceEEecCcCC-eEEEE
Q psy1841 111 SGEAFKIHISSSTFELLEKLGGYYCEERGLVQIKVSNV-ERGWC 153 (156)
Q Consensus 111 ~a~~~~I~vS~~t~~~l~~~~~~~~~~~g~~~vkG~~~-~~~~~ 153 (156)
.+++++|++|+++++.+... .|.+.+.+.+.+||... ...|+
T Consensus 134 ~a~~~~i~vs~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~~~y~ 176 (177)
T cd07302 134 LAKPGQILVSEATYELLGDA-GFEFEELGEVELKGKSGPVRVYR 176 (177)
T ss_pred cCCCCEEEECHHHHHhhccC-ceEEEEeCCEEecCCCCceEEEE
Confidence 99999999999999999862 39999999999999844 45554
No 8
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=99.76 E-value=2e-18 Score=137.57 Aligned_cols=110 Identities=17% Similarity=0.113 Sum_probs=84.2
Q ss_pred eeeEEeeccCChHHHHHHHHhhcC----CCCCccceeeeEEecceeeeeeccEEEEEeCCccccccccCchHHHHHhhhh
Q psy1841 35 YKDITIIPILNNEFDETTQECAST----PPLSPSLVRASVILYGKEMCYHRPCVAGVVGLKMPRYCLFGDTVNTASRMES 110 (156)
Q Consensus 35 y~~v~gi~~~~~~~~~~~~~~~~~----~~~~~~~lr~~v~~~~riGihtG~vv~G~vG~~~~~y~v~Gd~VN~AsRLe~ 110 (156)
+|++|+.|....+-.+++.+++.+ ......+. +++|||||+|+|+.|.+|. ||+||++||+|+|||+
T Consensus 99 ~la~F~~p~~~~~A~~~a~~~~~~~~~~~~~~~~~~-----l~~riGi~~G~vv~~~~g~----~~~~G~~VN~AaRLe~ 169 (227)
T COG2114 99 FLAVFGRPSPLEDAVACALDLQLALRNPLARLRRES-----LRVRIGIHTGEVVVGNTGG----YTVVGSAVNQAARLES 169 (227)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHHHHHhhccCcC-----eeEEEEEEeecEEEEeecC----eeEechHhHHHHHHHH
Confidence 899999999777221222211112 11111111 6678899999999999988 9999999999999999
Q ss_pred cCCccEEEecHHHHHHhh-hcCceEEEEcceEEecCcCCe-EEEEEc
Q psy1841 111 SGEAFKIHISSSTFELLE-KLGGYYCEERGLVQIKVSNVE-RGWCPD 155 (156)
Q Consensus 111 ~a~~~~I~vS~~t~~~l~-~~~~~~~~~~g~~~vkG~~~~-~~~~l~ 155 (156)
.++|++|++|+++++.+. .. +.+...|...+||.+.+ ..|.+.
T Consensus 170 ~a~~g~i~iS~~~~~~~~~~~--~~~~~~g~~~lkg~~~~~~v~~~~ 214 (227)
T COG2114 170 LAKPGQVLLSEATYDLVRDLV--DLFSGLGSHRLKGLARPVRVYQLC 214 (227)
T ss_pred hcCCCeEEEcHHHHHHHhhhh--hhhhcCCceecCCCCCceEEEEec
Confidence 999999999999999999 44 78899999999998665 456554
No 9
>KOG3618|consensus
Probab=99.70 E-value=6.8e-18 Score=151.71 Aligned_cols=120 Identities=22% Similarity=0.207 Sum_probs=97.4
Q ss_pred eeeEEeeccCChHHHHHHHHhhcCCCCCcc--ceeeeEEecceeeeeeccEEEEEeCCccccccccCchHHHHHhhhhcC
Q psy1841 35 YKDITIIPILNNEFDETTQECASTPPLSPS--LVRASVILYGKEMCYHRPCVAGVVGLKMPRYCLFGDTVNTASRMESSG 112 (156)
Q Consensus 35 y~~v~gi~~~~~~~~~~~~~~~~~~~~~~~--~lr~~v~~~~riGihtG~vv~G~vG~~~~~y~v~Gd~VN~AsRLe~~a 112 (156)
|+||.|-|.+.++|+-+++++...+..... ...-+-.++||+|+|||.|+||++|..|..||||.+.||+|..||+.+
T Consensus 393 YYCVaGCPEPraDHA~ccvEMGLgMI~AirqFd~~r~e~VnMRVGvHTGtVlCGivGtrRfKFDVwSNDV~LAN~MEssG 472 (1318)
T KOG3618|consen 393 YYCVAGCPEPRADHAYCCVEMGLGMIKAIRQFDQERKEMVNMRVGVHTGTVLCGIVGTRRFKFDVWSNDVNLANLMESSG 472 (1318)
T ss_pred eeeecCCCCCcccceeeehhhcchHHHHHHHHHHHhhcccceEEEEecceEEeeeeecceEeeeeccCcchHHHHHHhcC
Confidence 999999999999999888887766443332 222234568899999999999999999999999999999999999999
Q ss_pred CccEEEecHHHHHHhhhcCceEEEEc------ceEEecCc------CCeEEEEEcC
Q psy1841 113 EAFKIHISSSTFELLEKLGGYYCEER------GLVQIKVS------NVERGWCPDG 156 (156)
Q Consensus 113 ~~~~I~vS~~t~~~l~~~~~~~~~~~------g~~~vkG~------~~~~~~~l~g 156 (156)
.++++||||+|...+++. |..++- ++..+.|. +...||++.|
T Consensus 473 vag~VHiSeaTak~L~d~--Ye~EeG~~~~g~~~~~V~g~~rRtnP~t~kt~li~G 526 (1318)
T KOG3618|consen 473 VAGKVHISEATAKYLDDR--YEMEEGKVIEGLGQSVVAGQLRRTNPGTLKTYLISG 526 (1318)
T ss_pred CCcceEeeHHHHHHhccc--ceeccCccccccceeEEeceeeecCCcccceEEecC
Confidence 999999999999999975 777643 34445453 3367888776
No 10
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=99.62 E-value=7.2e-16 Score=118.76 Aligned_cols=95 Identities=40% Similarity=0.503 Sum_probs=75.5
Q ss_pred eeeEEeeccCCh-HHHHHHHHhhcCCCCCcccee---eeEEecceeeeeeccEEEEEeCCccccccccCchHHHHHhhhh
Q psy1841 35 YKDITIIPILNN-EFDETTQECASTPPLSPSLVR---ASVILYGKEMCYHRPCVAGVVGLKMPRYCLFGDTVNTASRMES 110 (156)
Q Consensus 35 y~~v~gi~~~~~-~~~~~~~~~~~~~~~~~~~lr---~~v~~~~riGihtG~vv~G~vG~~~~~y~v~Gd~VN~AsRLe~ 110 (156)
++++++.|.... ++...+..++.+.......+. ...++++|||+|+|++++|.+|...+.||+||++||+|+||++
T Consensus 89 ~l~~F~~~~~~~~~~a~~a~~~al~l~~~~~~~~~~~~~~~l~~riGih~G~v~~~~~g~~~~~~~~~G~~vn~AarL~~ 168 (194)
T smart00044 89 YMVVSGLPTEALVDHAELAADEALDMVESLKTVLSQHRGNGLRVRIGIHTGPVVAGVVGITMPRYCLFGDTVNLASRMES 168 (194)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHHHHHHHHHHHhhccCCCeeEEEEEeccceEEEecCCCCceeEEeChHHHHHHHHHh
Confidence 899999998884 666666665554211111110 1445677889999999999999997789999999999999999
Q ss_pred cCCccEEEecHHHHHHhhh
Q psy1841 111 SGEAFKIHISSSTFELLEK 129 (156)
Q Consensus 111 ~a~~~~I~vS~~t~~~l~~ 129 (156)
.+++++|++|+++++.+..
T Consensus 169 ~a~~g~i~vs~~~~~~l~~ 187 (194)
T smart00044 169 VGDPGQILVSEETYSLLRR 187 (194)
T ss_pred cCCCCeEEECHHHHHHHHh
Confidence 9999999999999999964
No 11
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=96.83 E-value=0.0015 Score=45.82 Aligned_cols=46 Identities=37% Similarity=0.480 Sum_probs=40.2
Q ss_pred EecceeeeeeccEEEEEeCCccccccccCchHHHHHhhhhcCCccEE
Q psy1841 71 ILYGKEMCYHRPCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKI 117 (156)
Q Consensus 71 ~~~~riGihtG~vv~G~vG~~~~~y~v~Gd~VN~AsRLe~~a~~~~I 117 (156)
.+.+++|++.|++..+..|. ++.++.+|+.+|.|+++...+++++|
T Consensus 87 ~~~~~ig~~~g~~~~~~~~~-~~~~~~~~~~~~~a~~a~~~a~~~~i 132 (133)
T cd07556 87 PVRVRIGIHTGPVVVGVIGS-RPQYDVWGALVNLASRMESQAKAGQV 132 (133)
T ss_pred ceEEEEEEecccEEEEeccC-CccceEEcHHHHHHHHHHhcCCCCCc
Confidence 34557788999999998887 88899999999999999999998876
No 12
>KOG2716|consensus
Probab=27.82 E-value=13 Score=30.18 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=31.4
Q ss_pred EEEeecc-ceeeehhhhh--------hHHHHHHhhcccceeeEEee
Q psy1841 5 VYLKRSH-HVKVEVGHYR--------YEQKLLCLLWKVEYKDITII 41 (156)
Q Consensus 5 ~~~~~~~-~~~~~~~~~r--------~~~~~~~l~~~~~y~~v~gi 41 (156)
|+|-||. |++.++-++| -..++-+|+...+|+.+.|+
T Consensus 48 IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~L 93 (230)
T KOG2716|consen 48 IFIDRSPKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGL 93 (230)
T ss_pred EEecCChhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHH
Confidence 7899986 8999999999 78888888888888877764
No 13
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=21.25 E-value=2.6e+02 Score=18.60 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=26.6
Q ss_pred hHHHHHhhhhcCCccEEEecHHHHHHhhhcCceEEEE
Q psy1841 101 TVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEE 137 (156)
Q Consensus 101 ~VN~AsRLe~~a~~~~I~vS~~t~~~l~~~~~~~~~~ 137 (156)
.+++|.++.+++ .+|..|+.|++.+.+.+ ..+.+
T Consensus 2 ~~~~a~~l~~lG--~~i~AT~gTa~~L~~~G-i~~~~ 35 (95)
T PF02142_consen 2 IVPLAKRLAELG--FEIYATEGTAKFLKEHG-IEVTE 35 (95)
T ss_dssp HHHHHHHHHHTT--SEEEEEHHHHHHHHHTT---EEE
T ss_pred HHHHHHHHHHCC--CEEEEChHHHHHHHHcC-CCcee
Confidence 478899999888 89999999999999764 55333
No 14
>PF10655 DUF2482: Hypothetical protein of unknown function (DUF2482); InterPro: IPR018917 This entry is represented by Bacteriophage 80, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. All the members of this very small, very short family are derived from bacteriophages, of the SA bacteriophages 11, Mu50B, system, and from the Staphylococcal_phi-Mu50B-like_prophages subsystem. All members are hypothetical proteins.
Probab=21.06 E-value=60 Score=22.72 Aligned_cols=33 Identities=9% Similarity=0.210 Sum_probs=24.8
Q ss_pred eeeeeeccEEEEEeCCccccccccCchHHHHHhhhhcCCc
Q psy1841 75 KEMCYHRPCVAGVVGLKMPRYCLFGDTVNTASRMESSGEA 114 (156)
Q Consensus 75 riGihtG~vv~G~vG~~~~~y~v~Gd~VN~AsRLe~~a~~ 114 (156)
.||+.-|.+..+ .-.++|+++++|.-|-....-
T Consensus 44 ~igv~~GD~~~s-------s~~alG~~~~lanlL~n~~~f 76 (100)
T PF10655_consen 44 TIGVSNGDFISS-------SHCALGNPFGLANLLDNADNF 76 (100)
T ss_pred eeccccCccccc-------cchhhccHHHHHHHHhhhhhH
Confidence 467789988755 237899999999988665443
Done!