RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1841
         (156 letters)



>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
           domain. 
          Length = 184

 Score = 93.5 bits (233), Expect = 1e-24
 Identities = 33/63 (52%), Positives = 44/63 (69%)

Query: 82  PCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERGLV 141
           P VAGV+G + PRY ++GDTVN ASRMES+G   KIH+S  T+ LL+    +   ERG V
Sbjct: 110 PVVAGVIGARRPRYDVWGDTVNLASRMESTGVPGKIHVSEETYRLLKTREQFEFTERGEV 169

Query: 142 QIK 144
           ++K
Sbjct: 170 EVK 172


>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
           Present in two copies in mammalian adenylyl cyclases.
           Eubacterial homologues are known. Two residues (Asn,
           Arg) are thought to be involved in catalysis. These
           cyclases have important roles in a diverse range of
           cellular processes.
          Length = 194

 Score = 92.3 bits (230), Expect = 4e-24
 Identities = 33/53 (62%), Positives = 42/53 (79%)

Query: 82  PCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYY 134
           P VAGVVG++MPRYCLFGDTVN ASRMES+G+  +I +S  T+ LL + GG +
Sbjct: 140 PVVAGVVGIRMPRYCLFGDTVNLASRMESAGDPGQIQVSEETYSLLARRGGQF 192


>gnl|CDD|143636 cd07302, CHD, cyclase homology domain.  Catalytic domains of the
           mononucleotidyl cyclases (MNC's), also called cyclase
           homology domains (CHDs), are part of the class III
           nucleotidyl cyclases. This class includes eukaryotic and
           prokaryotic adenylate cyclases (AC's) and guanylate
           cyclases (GC's). They seem to share a common catalytic
           mechanism in their requirement for two magnesium ions to
           bind the polyphosphate moiety of the nucleotide.
          Length = 177

 Score = 88.0 bits (219), Expect = 1e-22
 Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 82  PCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERGLV 141
           P VAGVVG + P Y + GDTVN A+R+ES  +  +I +S +T+ELL    G+  EE G V
Sbjct: 105 PVVAGVVGSERPEYTVIGDTVNLAARLESLAKPGQILVSEATYELLGD-AGFEFEELGEV 163

Query: 142 QIK 144
           ++K
Sbjct: 164 ELK 166


>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
           Class III nucleotidyl cyclases are the largest, most
           diverse group of nucleotidyl cyclases (NC's) containing
           prokaryotic and eukaryotic proteins. They can be divided
           into two major groups; the mononucleotidyl cyclases
           (MNC's) and the diguanylate cyclases (DGC's).  The
           MNC's, which include the adenylate cyclases (AC's) and
           the guanylate cyclases (GC's), have a conserved cyclase
           homology domain (CHD), while the DGC's have a conserved
           GGDEF domain, named after a conserved motif within this
           subgroup. Their products, cyclic guanylyl and adenylyl
           nucleotides, are second messengers that play important
           roles in eukaryotic signal transduction and prokaryotic
           sensory pathways.
          Length = 133

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 82  PCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIH 118
           P V GV+G + P+Y ++G  VN ASRMES  +A ++ 
Sbjct: 98  PVVVGVIGSR-PQYDVWGALVNLASRMESQAKAGQVL 133


>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain
           HAMP domain) [Signal transduction mechanisms].
          Length = 227

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 82  PCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLE 128
             V G  G     Y + G  VN A+R+ES  +  ++ +S +T++L+ 
Sbjct: 145 EVVVGNTG----GYTVVGSAVNQAARLESLAKPGQVLLSEATYDLVR 187


>gnl|CDD|237829 PRK14834, PRK14834, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 249

 Score = 26.3 bits (58), Expect = 6.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 29  LLWKVEYKDITIIPILNNEFDETTQECA 56
           LLW+  Y ++  +PI   +FD+   E A
Sbjct: 202 LLWQAAYSELLFVPIHWPDFDKAALEAA 229


>gnl|CDD|111411 pfam02509, Rota_NS35, Rotavirus non-structural protein 35.
           Rotavirus non-structural protein 35 (NS35) is a basic
           protein which possesses RNA-binding activity and is
           essential for genome replication.
          Length = 316

 Score = 26.0 bits (57), Expect = 9.9
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 30  LWKVEYKDITIIPILNNEFDETTQECASTPPLSPSLVRASV 70
           +WK++Y    ++PI+++ F E      +  P+    V+  V
Sbjct: 166 MWKLDYSSHKLMPIMDDNFIEYKITLNTKTPIPDRHVKELV 206


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0717    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,710,775
Number of extensions: 654283
Number of successful extensions: 446
Number of sequences better than 10.0: 1
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 9
Length of query: 156
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 67
Effective length of database: 6,990,096
Effective search space: 468336432
Effective search space used: 468336432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)