RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1841
(156 letters)
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 132 bits (333), Expect = 2e-39
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 82 PCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERGLV 141
AGVVG+KMPRYCLFG+ V A++ ES KI++S +T+ LL+ G+ R
Sbjct: 116 SVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPRSRE 175
Query: 142 QIK 144
++
Sbjct: 176 ELP 178
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 128 bits (323), Expect = 5e-38
Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 82 PCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERGLV 141
P +AGV+G + P+Y ++G+TVN ASRM+S+G KI ++ T +L+ L GY C RG++
Sbjct: 134 PVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTL-GYTCTCRGII 192
Query: 142 QIK 144
+K
Sbjct: 193 NVK 195
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 125 bits (317), Expect = 2e-37
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 82 PCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERGLV 141
P VAGVVG + RYC++GD VN ASRMES+ +I + +E L+ + ERG +
Sbjct: 112 PVVAGVVGSRRFRYCVWGDAVNVASRMESTDSVGQIQVPDEVYERLK--DDFVLRERGHI 169
Query: 142 QIK 144
+K
Sbjct: 170 NVK 172
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 125 bits (315), Expect = 7e-37
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 82 PCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELL----EKLGGYYCEE 137
V GV+G +MPRYCLFG+TVN SR E++GE KI++S T+ L ++ E
Sbjct: 120 EVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEH 179
Query: 138 RGLVQIK 144
RG V +K
Sbjct: 180 RGPVSMK 186
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 112 bits (283), Expect = 2e-32
Identities = 37/63 (58%), Positives = 44/63 (69%)
Query: 82 PCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERGLV 141
P VAGVVG KMPR+ LFGDTVNTASRMES GEA +IHIS + + L + ERG +
Sbjct: 112 PVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIHISEACYCCLRSKERFEIRERGNI 171
Query: 142 QIK 144
+K
Sbjct: 172 TVK 174
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 110 bits (276), Expect = 6e-31
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 82 PCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERGLV 141
GV+GL+ ++ ++ + V A+ ME+ G+A +IHI+ +T L G Y E
Sbjct: 136 RVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLN--GDYEVEPGCGG 193
Query: 142 QIKVSNVERG 151
+ E
Sbjct: 194 ERNAYLKEHS 203
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 80.3 bits (198), Expect = 2e-19
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 82 PCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELL--EKLGGYYCEERG 139
C + Y +G T N A+R ES ++ ++ + + L E G
Sbjct: 142 LCDIRHDEV-TKGYDYYGRTPNMAARTESVANGGQVLMTHAAYMSLSAEDRKQIDVTALG 200
Query: 140 LVQIK 144
V ++
Sbjct: 201 DVALR 205
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 75.4 bits (185), Expect = 7e-17
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 10/66 (15%)
Query: 82 PCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELL---EKLGGYYCEER 138
V+ FG VN ASR+ + ++ S E L + G+
Sbjct: 305 MAVSRA-------GDWFGSPVNVASRVTGVARPGAVLVADSVREALGDAPEADGFQWSFA 357
Query: 139 GLVQIK 144
G +++
Sbjct: 358 GPRRLR 363
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 53.8 bits (130), Expect = 7e-10
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 95 YCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERGLVQIK 144
+FGD VN A+R+E+ E I +S ++ + + GL ++K
Sbjct: 110 GDIFGDAVNVAARLEAISEPGAICVSDIVHQITQDRVSEPFTDLGLQKVK 159
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis}
PDB: 1ybu_A*
Length = 184
Score = 53.4 bits (129), Expect = 1e-09
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 87 VVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERGLVQIK 144
V + G V+ +R+ + ++ +SS+ +++ + ERG ++K
Sbjct: 108 EVRDASHGTDVAGVAVHIGARVCALAGPSEVLVSSTVRDIVAGS-RHRFAERGEQELK 164
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 52.2 bits (126), Expect = 4e-09
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 82 PCVAGVVG--LKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERG 139
V G +G + +Y + G VN R+ES +I ISS+T E +
Sbjct: 120 EVVVGNIGSEKRT-KYGVVGAQVNLTYRIESYTTGGQIFISSTTLEAAG--DRVHVNGNR 176
Query: 140 LVQIK 144
VQ K
Sbjct: 177 TVQPK 181
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 51.8 bits (125), Expect = 6e-09
Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 82 PCVAGVVG--LKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERG 139
V G+ G + + G +VN A+R++ + I +S+ + + +R
Sbjct: 141 MAVVGLFGSQERS-DFTAIGPSVNIAARLQEATAPNSIMVSAMVAQY---VPDEEIIKRE 196
Query: 140 LVQIK 144
+++K
Sbjct: 197 FLELK 201
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 51.4 bits (124), Expect = 6e-09
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 82 PCVAGVVG--LKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEERG 139
C G G +M Y + G VN ASR+ES+ EA +I IS T+ L++ C ++G
Sbjct: 118 YCTVGNFGADTRM-DYTIIGREVNLASRLESASEAGEILISHETYSLIK--DVIMCRDKG 174
Query: 140 LVQIK 144
+ +K
Sbjct: 175 QIAVK 179
>1l9v_A Rotavirus-NSP2; alpha/beta protein, HIT-like fold, octamer, two
domain prote protein; 2.60A {Simian 11 rotavirus} SCOP:
d.13.2.1 d.216.1.1 PDB: 2r7c_A* 2r7j_A 2r7p_A* 2r8f_A*
Length = 317
Score = 33.6 bits (76), Expect = 0.018
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Query: 30 LWKVEYKDITIIPILNNEFDETTQECASTPPLSPSLVRASVILYGKEMCYHRPCVAGVV- 88
+WK+ Y + ++PIL+ F E P+S V+ V E+ + A +
Sbjct: 166 MWKLTYLEHQLMPILDQNFIEYKVTLNEDKPISDVHVKELV----AELRWQYNKFAVITH 221
Query: 89 GLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEK 129
G R + N A R+ ++ ++ ++ F LL++
Sbjct: 222 GKGHYRIVKYSSVANHADRVYATFKSNVKTGVNNDFNLLDQ 262
>2gu0_A Nonstructural protein 2; NSP2, HIT motif, bristol, viral protein;
2.80A {Human rotavirus C}
Length = 312
Score = 32.1 bits (72), Expect = 0.052
Identities = 15/101 (14%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 30 LWKVEYKDITIIPILNNEFDETTQECASTPPLSPSLVRASVILYGKEMCYHRPCVAGVV- 88
+ K++Y + ++P++ +E+ T + A + Y+ A +
Sbjct: 166 ITKLDYSNHKLLPLMADEYKITINT---KTDIPDRNQTAFA----AYIRYNFNKFAAISH 218
Query: 89 GLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEK 129
G + R L ++ A R++ ++ K H +++ +
Sbjct: 219 GKRHWRLVLHSQLMSHAERLDRKIKSDKKHGRQFSYDDGDM 259
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.35
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 23/75 (30%)
Query: 53 QECASTPPLSPSLVRASVILYGKE-----MCYHRPCVAGVVGLKMPRYCLFG--DTVNTA 105
E L PS++ S+ E M + L + + + N+
Sbjct: 311 YEAYPNTSLPPSILEDSL--ENNEGVPSPM-------LSISNL--TQEQVQDYVNKTNS- 358
Query: 106 SRMESSGEAFKIHIS 120
++ IS
Sbjct: 359 ----HLPAGKQVEIS 369
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 1.5
Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 48/166 (28%)
Query: 11 HHVKVEVG--HYRYEQKLLCLLWK----VEYKDI--TIIPILNN-EFDETTQECASTPPL 61
HH+ E G Y+Y+ L + KD+ IL+ E D
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS------- 57
Query: 62 SPSLVRASVILYGKEMCYHRPCVAGVVG-----------------LKMP--RYCLFGDTV 102
V ++ L+ + V V + P ++ +
Sbjct: 58 -KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 103 NTASRMESSGEAF-KIHISSSTFELLEKLGGYYCEERGLVQIKVSN 147
+ R+ + + F K ++S + KL + L++++ +
Sbjct: 117 D---RLYNDNQVFAKYNVSR--LQPYLKL------RQALLELRPAK 151
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension,
transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Length = 303
Score = 26.5 bits (59), Expect = 4.5
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 108 MESSGEAFKIHISSSTFELLEKLG---------GYYCEERGLVQIKVSNVERG 151
M A I+ +EL E +G Y ++ V IK N+E+
Sbjct: 1 MSEDSSALPWSINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKC 53
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis,
staphyloxanthin biosynthesis, transferase, head-TO-head
condensation, inhibitor; HET: 673; 1.31A {Staphylococcus
aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A*
3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A*
3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A*
4e9u_A* ...
Length = 293
Score = 26.1 bits (58), Expect = 5.0
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 78 CYHRPCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAF 115
CY VAG VG + +T T GE+
Sbjct: 136 CYG---VAGTVGEVLTPILSDHETHQTYDVARRLGESL 170
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 25.6 bits (57), Expect = 5.4
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 76 EMCYHRPCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEK 129
E YH G+ + +P LF D + + M++ G A ++ ++ + L
Sbjct: 101 EAIYH-----GIPMVGIP---LFADQPDNIAHMKARGAAVRVDFNTMSSTDLLN 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.431
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,409,725
Number of extensions: 125978
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 21
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)