RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1841
         (156 letters)



>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 199

 Score = 65.3 bits (158), Expect = 2e-14
 Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 77  MCYHRPCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCE 136
              H P +AGV+G + P+Y ++G+TVN ASRM+S+G   KI ++  T  +L+ L GY C 
Sbjct: 121 GINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTL-GYTCT 179

Query: 137 ERGLVQIK 144
            RG++ +K
Sbjct: 180 CRGIINVK 187


>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis
           familiaris) [TaxId: 9615]}
          Length = 190

 Score = 53.8 bits (128), Expect = 4e-10
 Identities = 16/67 (23%), Positives = 30/67 (44%)

Query: 78  CYHRPCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCEE 137
            +      GV+GL+  ++ ++ + V  A+ ME+ G+A +IHI+ +T   L          
Sbjct: 112 IHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLNGDYEVEPGC 171

Query: 138 RGLVQIK 144
            G     
Sbjct: 172 GGERNAY 178


>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase
           {Trypanosome (Trypanosoma brucei), different isoform
           [TaxId: 5691]}
          Length = 235

 Score = 49.2 bits (116), Expect = 2e-08
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 78  CYHRPCVAGVVGLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKL--GGYYC 135
            +   C      +    Y  +G T N A+R ES     ++ ++ + +  L          
Sbjct: 138 IHTGLCDIRHDEVTKG-YDYYGRTPNMAARTESVANGGQVLMTHAAYMSLSAEDRKQIDV 196

Query: 136 EERGLVQIK 144
              G V ++
Sbjct: 197 TALGDVALR 205


>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis
           [TaxId: 118562]}
          Length = 197

 Score = 48.0 bits (113), Expect = 4e-08
 Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 78  CYHRPCVAGVVGL-KMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLEKLGGYYCE 136
            +    V G+ G  +   +   G +VN A+R++ +     I +S+   + +         
Sbjct: 117 IHQGMAVVGLFGSQERSDFTAIGPSVNIAARLQEATAPNSIMVSAMVAQYVP---DEEII 173

Query: 137 ERGLVQIK 144
           +R  +++K
Sbjct: 174 KREFLELK 181


>d2r7ca1 d.13.2.1 (A:144-313) Rotavirus NSP2 fragment, C-terminal
           domain {Simian 11 rotavirus [TaxId: 10923]}
          Length = 170

 Score = 29.2 bits (65), Expect = 0.14
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 30  LWKVEYKDITIIPILNNEFDETTQECASTPPLSPSLVRASVILYGKEMCYHRPCVAGVV- 88
           +WK+ Y +  ++PIL+  F E         P+S   V+  V     E+ +     A +  
Sbjct: 23  MWKLTYLEHQLMPILDQNFIEYKVTLNEDKPISDVHVKELV----AELRWQYNKFAVITH 78

Query: 89  GLKMPRYCLFGDTVNTASRMESSGEAFKIHISSSTFELLE 128
           G    R   +    N A R+ ++ ++      ++ F LL+
Sbjct: 79  GKGHYRIVKYSSVANHADRVYATFKSNVKTGVNNDFNLLD 118


>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing
           protein METT10D {Human (Homo sapiens) [TaxId: 9606]}
          Length = 250

 Score = 27.1 bits (59), Expect = 1.0
 Identities = 6/39 (15%), Positives = 8/39 (20%)

Query: 6   YLKRSHHVKVEVGHYRYEQKLLCLLWKVEYKDITIIPIL 44
             KR       +G       L   L       +T     
Sbjct: 197 LKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFC 235


>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus
          thermophilus [TaxId: 274]}
          Length = 59

 Score = 22.7 bits (49), Expect = 8.6
 Identities = 6/15 (40%), Positives = 8/15 (53%)

Query: 7  LKRSHHVKVEVGHYR 21
          +K  H V  E G+Y 
Sbjct: 38 MKPPHTVCPECGYYA 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0716    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 605,853
Number of extensions: 25768
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 10
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.7 bits)