RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1844
(120 letters)
>gnl|CDD|143441 cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH families 4 and 17.
Delta(1)-pyrroline-5-carboxylate dehydrogenase
(EC=1.5.1.12 ), families 4 and 17: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), also known as ALDH4A1 in humans,
is a mitochondrial homodimer involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. This is a necessary step
in the pathway interconnecting the urea and
tricarboxylic acid cycles. The preferred substrate is
glutamic gamma-semialdehyde, other substrates include
succinic, glutaric and adipic semialdehydes. Also
included in this CD is the Aldh17 Drosophila
melanogaster (Q9VUC0) P5CDH and similar sequences.
Length = 522
Score = 219 bits (560), Expect = 1e-70
Identities = 81/120 (67%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 1 LNAFFAKELTKYQPISEDPKSTLNSLRYRGLDGFVAAVSPFNFTAIGGNLAYTPALMGSS 60
N +A+EL QP+S P N L YR L+GFV AVSPFNFTAIGGNLA PALMG+
Sbjct: 141 FNVKYAEELYAQQPLSS-PAGVWNRLEYRPLEGFVYAVSPFNFTAIGGNLAGAPALMGNV 199
Query: 61 VLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
VLWKPSDTA+LSNY +YKI+ EAG+PPGV+NFVP DGPV GDT+ ASP+LAG++FTGS P
Sbjct: 200 VLWKPSDTAVLSNYLVYKILEEAGLPPGVINFVPGDGPVVGDTVLASPHLAGLHFTGSTP 259
>gnl|CDD|233324 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 1. This model represents one of
two related branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. The two branches are not as closely
related to each other as some aldehyde dehydrogenases
are to this branch, and separate models are built for
this reason. The enzyme is the second of two in the
degradation of proline to glutamate [Energy metabolism,
Amino acids and amines].
Length = 532
Score = 180 bits (459), Expect = 9e-56
Identities = 74/119 (62%), Positives = 91/119 (76%), Gaps = 2/119 (1%)
Query: 2 NAFFAKELTKYQPISEDPKSTLNSLRYRGLDGFVAAVSPFNFTAIGGNLAYTPALMGSSV 61
NA +A+EL + QPIS N YR L+GFV A+SPFNFTAI GNLA PALMG++V
Sbjct: 142 NAKYARELYEQQPISAPG--EWNRTEYRPLEGFVYAISPFNFTAIAGNLAGAPALMGNTV 199
Query: 62 LWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
+WKPSDTA+LSNY + +I+ EAG+PPGV+NFVP DGP+ DT+ A P LAGI+FTGS P
Sbjct: 200 IWKPSDTAMLSNYLVMRILEEAGLPPGVINFVPGDGPLVSDTVLADPDLAGIHFTGSTP 258
>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent
delta(1)-pyrroline-5-carboxylate dehydrogenase-like.
ALDH subfamily of the NAD+-dependent,
delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH,
EC=1.5.1.12). The proline catabolic enzymes, proline
dehydrogenase and P5CDH catalyze the two-step oxidation
of proline to glutamate. P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). These enzymes play important roles
in cellular redox control, superoxide generation, and
apoptosis. In certain prokaryotes such as Escherichia
coli, PutA is also a transcriptional repressor of the
proline utilization genes. Monofunctional enzyme
sequences such as those seen in the Bacillus RocA P5CDH
are also present in this subfamily as well as the human
ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Length = 500
Score = 139 bits (352), Expect = 2e-40
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 2 NAFFAKELTKYQPISEDPKSTLNSLRYRGLDGFVAAVSPFNFT-AIGGNLAYTPALMGSS 60
A A L N Y GL G +SP+NF AI + P +G++
Sbjct: 126 YARAALRLRYPAVEVVPYPGEDNESFYVGL-GAGVVISPWNFPVAIFTGMIVAPVAVGNT 184
Query: 61 VLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
V+ KP++ A++ Y +++I EAG PPGVV F+P G G +T + GINFTGS+
Sbjct: 185 VIAKPAEDAVVVGYKVFEIFHEAGFPPGVVQFLPGVGEEVGAYLTEHERIRGINFTGSLE 244
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 101 bits (253), Expect = 3e-26
Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 4 FFAKELTKYQP-ISEDPKSTLNSLRYRGLDGFVAAVSPFNF-TAIGGNLAYTPALMGSSV 61
++A+E+ + + E N YR L G A +SP+NF AI + + G++V
Sbjct: 139 YYAREMLRLRGFPVEMVPGEDNRYVYRPL-GVGAVISPWNFPLAILAGMTTAALVTGNTV 197
Query: 62 LWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
+ KP++ + + +I+ EAG+PPGVVNF+P G GD + P + I FTGS
Sbjct: 198 VLKPAEDTPVIAAKLVEILEEAGLPPGVVNFLPGPGEEVGDYLVEHPDVRFIAFTGS 254
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 100 bits (252), Expect = 3e-26
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 4 FFAKELTKYQP--ISEDPKSTLNSLRYRGLDGFVAAVSPFNFTAIGGNLAYTPALM-GSS 60
++A K + + DP L R L G V A++P+NF + PAL G++
Sbjct: 99 YYAGLARKLEGETLPSDP-GVLAYTRREPL-GVVGAITPWNFPLLLAAWKIAPALAAGNT 156
Query: 61 VLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
V+ KPS+ L+ + ++ EAG+PPGV+N V G GD + P + ++FTGS
Sbjct: 157 VVLKPSELTPLTALLLAELFEEAGLPPGVLNVVTGSGSEVGDALVEHPDVDKVSFTGSTE 216
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 95.4 bits (238), Expect = 2e-24
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 4 FFAKELTKY--QPISEDPKSTLNSLRYRGLDGFVAAVSPFNFTA--IGGNLAYTPAL-MG 58
++A + + I L +R L G V A++P+NF LA PAL G
Sbjct: 68 YYAGLARRLHGEVIPSPDPGELAIVRREPL-GVVGAITPWNFPLLLAAWKLA--PALAAG 124
Query: 59 SSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
++V+ KPS+ L+ + +++ EAG+PPGV+N V DG G + + P + I+FTGS
Sbjct: 125 NTVVLKPSELTPLTALLLAELLAEAGLPPGVLNVVTGDGDEVGAALASHPRVDKISFTGS 184
Query: 119 VP 120
Sbjct: 185 TA 186
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 91.1 bits (227), Expect = 4e-23
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 4 FFAKELTKYQ--PISEDPKSTLNSLRYRGLDGFVAAVSPFNFTA--IGGNLAYTPAL-MG 58
+ A K + +R L G V ++P+NF LA PAL G
Sbjct: 64 YAAGLADKLGGPELPSPDPGGEAYVRREPL-GVVGVITPWNFPLLLAAWKLA--PALAAG 120
Query: 59 SSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
++V+ KPS+ L+ + +++ EAG+PPGVVN VP G G + + P + I+FTGS
Sbjct: 121 NTVVLKPSELTPLTALALAELLQEAGLPPGVVNVVPGGGDEVGAALLSHPRVDKISFTGS 180
Query: 119 VP 120
Sbjct: 181 TA 182
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 87.4 bits (217), Expect = 2e-21
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 4 FFAKELTK-YQPISEDPKSTLNSLRYRGLDGFVAAVSPFNF-TAIGGNLAYTPALMGSSV 61
++A+E + K + +R L G V A++P+NF A+ G++V
Sbjct: 106 YYAEEARRLEGETIPTDKGSKALVRREPL-GVVGAITPWNFPLALAAWKLAPALAAGNTV 164
Query: 62 LWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
+ KPS+ LS + ++ EAG+P GV+N V G GD + A P + I+FTGS
Sbjct: 165 VLKPSEQTPLSALALAELAAEAGLPAGVLNVVTGGGAEVGDALVAHPDVDAISFTGSTA 223
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 83.1 bits (206), Expect = 7e-20
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 24 NSLRYRGLDGFVAAVSPFNF-TAIGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIE 82
N Y L G +SP+NF AI + + G++VL KP+ + +++ E
Sbjct: 165 NRYFYIPL-GVGVVISPWNFPFAIMAGMTLAAIVAGNTVLLKPASDTPVIAAKFVEVLEE 223
Query: 83 AGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
AG+P GVVNFVP G GD + P I FTGS
Sbjct: 224 AGLPAGVVNFVPGSGSEVGDYLVDHPKTRFITFTGS 259
>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like.
Kinetic studies of the Bacillus subtilis ALDH-like ycbD
protein, which is involved in d-glucarate/d-galactarate
utilization, reveal that it is a NADP+-dependent,
alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH).
KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent
conversion of KGSA to alpha-ketoglutarate.
Interestingly, the NADP+-dependent, tetrameric,
2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an
enzyme involved in the catabolic pathway for D-arabinose
in Sulfolobus solfataricus, also clusters in this group.
This CD shows a distant phylogenetic relationship to the
Azospirillum brasilense KGSADH-II (-III) group.
Length = 473
Score = 76.9 bits (190), Expect = 1e-17
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 33 GFVAAVSPFNF-TAIGG-NLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 89
G V ++P+NF AI +A PAL G++V++KP++ S + + +I+ EAG+P GV
Sbjct: 137 GVVGLITPWNFPIAIPAWKIA--PALAYGNTVVFKPAELTPASAWALVEILEEAGLPAGV 194
Query: 90 VNFVPADGPVFGDTITASPYLAGINFTGSVP 120
N V G G + P + ++FTGS
Sbjct: 195 FNLVMGSGSEVGQALVEHPDVDAVSFTGSTA 225
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 74.9 bits (185), Expect = 5e-17
Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 3 AFFAKELTKYQPISEDPKSTLNSLRYRGLDGFVAAVSPFNF---TAIGGNLAYTPALM-G 58
A A+EL P P LN L G G +SP+NF G A AL G
Sbjct: 141 AAQARELFS-DPELPGPTGELNGLELHG-RGVFVCISPWNFPLAIFTGQIAA---ALAAG 195
Query: 59 SSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
++V+ KP++ L +++ EAGVP V+ VP DG G+ + A P + G+ FTGS
Sbjct: 196 NTVIAKPAEQTPLIAARAVELLHEAGVPRDVLQLVPGDGEEIGEALVAHPRIDGVIFTGS 255
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
involved the biosynthesis of coenzyme F(420) in
Methanocaldococcus jannaschii through the oxidation of
lactaldehyde to lactate and generation of NAPH, and
similar sequences are included in this CD.
Length = 456
Score = 73.9 bits (182), Expect = 1e-16
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 13/128 (10%)
Query: 1 LNAFFAKELTKYQPISEDPKSTLNSLRY--RGLDGFVAAVSPFNFTA------IGGNLAY 52
L A AK L + + + + R G V A++PFNF A I +A
Sbjct: 91 LAAEEAKVLRGETIPVDAYEYNERRIAFTVREPIGVVGAITPFNFPANLFAHKIAPAIA- 149
Query: 53 TPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAG 112
+G+SV+ KPS L+ + KI+ EAG+PPGV+N V G GD I +P +
Sbjct: 150 ----VGNSVVVKPSSNTPLTAIELAKILEEAGLPPGVINVVTGYGSEVGDEIVTNPKVNM 205
Query: 113 INFTGSVP 120
I+FTGS
Sbjct: 206 ISFTGSTA 213
>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1.
Uncharacterized aldehyde dehydrogenase (ORF name y4uC)
with sequence similarity to the moss Tortula ruralis
aldehyde dehydrogenase ALDH21A1 (RNP123) believed to
play an important role in the detoxification of
aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 453
Score = 73.4 bits (181), Expect = 2e-16
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 33 GFVAAVSPFNFTAIGGNLA---YTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 88
G VAA++PFNF NL PA+ G++V+ KP+ LS + ++++EAG+P G
Sbjct: 125 GVVAAITPFNFPL---NLVAHKVGPAIAAGNAVVLKPASQTPLSALKLAELLLEAGLPKG 181
Query: 89 VVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
+N V G GD + P + I+FTGS
Sbjct: 182 ALNVVTGSGETVGDALVTDPRVRMISFTGSPA 213
>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent
benzaldehyde dehydrogenase II, vanillin dehydrogenase,
p-hydroxybenzaldehyde dehydrogenase and related
proteins. ALDH subfamily which includes the
NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC,
BenzADH, EC=1.2.1.28) involved in the oxidation of
benzyl alcohol to benzoate; p-hydroxybenzaldehyde
dehydrogenase (PchA, HBenzADH) which catalyzes the
oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic
acid; vanillin dehydrogenase (Vdh, VaniDH) involved in
the metabolism of ferulic acid as seen in Pseudomonas
putida KT2440; and other related sequences.
Length = 431
Score = 72.6 bits (179), Expect = 3e-16
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPS-DTALLSNYTIYKIMIEAGVPPGVV 90
G V +SPFNF I + PAL +G++V+ KP T + I +I EAG+P GV+
Sbjct: 100 GVVGVISPFNFPLILAMRSVAPALALGNAVVLKPDSRTPVTGGLLIAEIFEEAGLPKGVL 159
Query: 91 NFVPADGPVFGDTITASPYLAGINFTGSVP 120
N VP G GD + P + I+FTGS
Sbjct: 160 NVVPGGGSEIGDALVEHPRVRMISFTGSTA 189
>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic
semialdehyde dehydrogenase-like. 4-hydroxymuconic
semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of
Pseudomonas fluorescens ACB involved in
4-hydroxyacetophenone degradation, and putative
hydroxycaproate semialdehyde dehydrogenase (ChnE) of
Brachymonas petroleovorans involved in cyclohexane
metabolism, and other similar sequences, are present in
this CD.
Length = 453
Score = 72.5 bits (178), Expect = 4e-16
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G V A+ P+NF + PAL G++V+ KP++ LS I ++M EAG P GV+N
Sbjct: 119 GVVGAIVPWNFPLMFAAWKVAPALAAGNTVVLKPAELTPLSALRIAELMAEAGFPAGVLN 178
Query: 92 FVPADGPVFGDTITASPYLAGINFTGSV 119
V G V G + P + I FTGS
Sbjct: 179 VVTGFGEVAGAALVEHPDVDKITFTGST 206
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 72.4 bits (178), Expect = 4e-16
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G VA ++PFN+ I AL G++V+ KPS+ + I +IM EAG+P GV N
Sbjct: 121 GVVAGITPFNYPLILATKKVAFALAAGNTVVLKPSEETPVIGLKIAEIMEEAGLPKGVFN 180
Query: 92 FVPADGPVFGDTITASPYLAGINFTGSVP 120
V G GD + P + + FTGS
Sbjct: 181 VVTGGGAEVGDELVDDPRVRMVTFTGSTA 209
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 70.6 bits (174), Expect = 2e-15
Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 23 LNSLRYRGLDGFVAAVSPFNFT-AI-GGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKI 79
N LR G FV +SP+NF AI G +A AL G++V+ KP++ L K+
Sbjct: 677 SNELRLHGRGVFVC-ISPWNFPLAIFLGQVA--AALAAGNTVIAKPAEQTPLIAAEAVKL 733
Query: 80 MIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
+ EAG+P V+ +P DG G +TA P +AG+ FTGS
Sbjct: 734 LHEAGIPKDVLQLLPGDGATVGAALTADPRIAGVAFTGS 772
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 69.5 bits (171), Expect = 4e-15
Identities = 43/106 (40%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 18 DPKSTLNSLRYRGLDGFVAAVSPFN----FTAIGGNLAYTPAL-MGSSVLWKPSDTALLS 72
D LN R L G VAA++P+N A LA PAL G++V+ KPS+ S
Sbjct: 107 DKGDYLNFTRREPL-GVVAAITPWNSPLLLLA--KKLA--PALAAGNTVVLKPSEHTPAS 161
Query: 73 NYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
+ K+ EAG PPGVVN V GP G+ + P +A I FTG
Sbjct: 162 TLELAKLAEEAGFPPGVVNVVTGFGPETGEALVEHPLVAKIAFTGG 207
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences are
present in this CD.
Length = 468
Score = 69.2 bits (170), Expect = 6e-15
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 33 GFVAAVSPFNFTA--IGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 89
G VA + P+NF I LA PAL+ G++++ KPS+ L+ +++ EAG+P GV
Sbjct: 135 GVVAGILPWNFPFFLIARKLA--PALVTGNTIVIKPSEETPLNALEFAELVDEAGLPAGV 192
Query: 90 VNFVPADGPVFGDTITASPYLAGINFTGSVP 120
+N V G V GD + A P + I+ TGS
Sbjct: 193 LNIVTGRGSVVGDALVAHPKVGMISLTGSTE 223
>gnl|CDD|226683 COG4230, COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase
[Energy production and conversion].
Length = 769
Score = 69.0 bits (169), Expect = 6e-15
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 8/101 (7%)
Query: 22 TLNSLRYRGLDGFVAAVSPFNFT-AI-GGNLAYTPALM-GSSVLWKPSD-TALLSNYTIY 77
T +L +R L G V +SP+NF AI G +A AL G+SVL KP++ T L++ +
Sbjct: 228 TFGNLTHRPL-GPVVCISPWNFPLAIFTGQIA--AALAAGNSVLAKPAEQTPLIAAQAV- 283
Query: 78 KIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
+++ EAGVPPGV+ +P G G +TA +AG+ FTGS
Sbjct: 284 RLLHEAGVPPGVLQLLPGRGETVGAALTADARVAGVMFTGS 324
>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs [Energy
metabolism, Amino acids and amines].
Length = 511
Score = 68.7 bits (168), Expect = 9e-15
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 4 FFAKELTKY--QPISEDPKSTLNSLRYRGLDGFVAAVSPFNFT-AIGGNLAYTPALMGSS 60
++A+++ + + N Y G +SP+NF AI + P + G+
Sbjct: 139 YYARQMIELAKGKPVNSREGETNQYVYTPT-GVTVVISPWNFPFAIMVGMTVAPIVTGNC 197
Query: 61 VLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
V+ KP++ A + +I+ EAG+P GVV FVP G GD + P + I FTGS
Sbjct: 198 VVLKPAEAAPVIAAKFVEILEEAGLPKGVVQFVPGSGSEVGDYLVDHPKTSLITFTGS 255
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 68.0 bits (167), Expect = 1e-14
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 33 GFVAAVSPFNFTAIGGNLAYT---PAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 88
G V A+ PFN+ NL + PAL MG++V++KP+ +L + + +AG P G
Sbjct: 143 GVVLAIGPFNYPL---NLTVSKLIPALIMGNTVVFKPATQGVLLGIPLAEAFHDAGFPKG 199
Query: 89 VVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
VVN V G GD + + I+FTGS
Sbjct: 200 VVNVVTGRGREIGDPLVTHGRIDVISFTGSTE 231
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant defense
against the environmental stress of elevated reactive
oxygen species.
Length = 451
Score = 68.2 bits (168), Expect = 1e-14
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 21/99 (21%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-----------GSSVLWKPSDTALLSNYTIYKIMI 81
G VAA++P+NF PA M G +V+ KP++ LS + ++
Sbjct: 119 GVVAAITPWNF----------PAAMITRKIAPALAAGCTVVLKPAEETPLSALALAELAE 168
Query: 82 EAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
EAG+P GV+N V G+ + ASP + I+FTGS
Sbjct: 169 EAGLPAGVLNVVTGSPAEIGEALCASPRVRKISFTGSTA 207
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 67.6 bits (166), Expect = 2e-14
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G V AV P+NF + PAL G+SV+ KP++ + L+ + ++ +EAG+P GV+N
Sbjct: 126 GVVGAVVPWNFPLLMAAWKIAPALAAGNSVVLKPAEQSPLTALRLAELALEAGLPAGVLN 185
Query: 92 FVPADGPVFGDTITASPYLAGINFTGS 118
VP G G+ + + + FTGS
Sbjct: 186 VVPGFGHTAGEALGLHMDVDALAFTGS 212
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 66.4 bits (163), Expect = 5e-14
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 10/95 (10%)
Query: 33 GFVAAVSPFNF-TAIGG-NLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEA----GV 85
G V ++ FNF A+ G N A AL+ G++V+WKPS+T L+ + KI+ E G+
Sbjct: 135 GVVGVITAFNFPVAVPGWNAA--IALVCGNTVVWKPSETTPLTAIAVTKILAEVLEKNGL 192
Query: 86 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
PPGVVN V G G+ + P + ++FTGS
Sbjct: 193 PPGVVNLVTGGGDG-GELLVHDPRVPLVSFTGSTE 226
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 66.0 bits (162), Expect = 7e-14
Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 7/90 (7%)
Query: 33 GFVAAVSPFNFT-AI-GGNLAYTPALM-GSSVLWKPSD-TALLSNYTIYKIMIEAGVPPG 88
G V +SP+NF AI G +A AL+ G++VL KP++ T L++ + +++ EAGVP
Sbjct: 678 GPVVCISPWNFPLAIFTGQIA--AALVAGNTVLAKPAEQTPLIAARAV-RLLHEAGVPKD 734
Query: 89 VVNFVPADGPVFGDTITASPYLAGINFTGS 118
+ +P DG G + A P +AG+ FTGS
Sbjct: 735 ALQLLPGDGRTVGAALVADPRIAGVMFTGS 764
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 65.8 bits (161), Expect = 8e-14
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 33 GFVAAVSPFNF-TAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVV 90
G VA ++P+NF AI + PAL+ G++V++KP++ + ++ EAG+PPGVV
Sbjct: 137 GVVALITPWNFPVAIPSWKIF-PALVCGNTVVFKPAEDTPACALKLVELFAEAGLPPGVV 195
Query: 91 NFVPADGPVFGDTITASPYLAGINFTGS 118
N V G G+ + P + ++FTGS
Sbjct: 196 NVVHGRGEEVGEALVEHPDVDVVSFTGS 223
>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase. Under
osmotic stress, betaine aldehyde dehydrogenase oxidizes
glycine betaine aldehyde into the osmoprotectant glycine
betaine, via the second of two oxidation steps from
exogenously supplied choline or betaine aldehyde. This
choline-glycine betaine synthesis pathway can be found
in gram-positive and gram-negative bacteria. In
Escherichia coli, betaine aldehyde dehydrogenase (betB)
is osmotically co-induced with choline dehydrogenase
(betA) in the presence of choline. These dehydrogenases
are located in a betaine gene cluster with the upstream
choline transporter (betT) and transcriptional regulator
(betI). Similar to E.coli, betaine synthesis in
Staphylococcus xylosus is also influenced by osmotic
stress and the presence of choline with genes localized
in a functionally equivalent gene cluster. Organization
of the betaine gene cluster in Sinorhizobium meliloti
and Bacillus subtilis differs from that of E.coli by the
absence of upstream choline transporter and
transcriptional regulator homologues. Additionally,
B.subtilis co-expresses a type II alcohol dehydrogenase
with betaine aldehyde dehydrogenase instead of choline
dehydrogenase as in E.coli, St.xylosus, and Si.meliloti.
Betaine aldehyde dehydrogenase is a member of the
aldehyde dehydrogenase family (pfam00171) [Cellular
processes, Adaptations to atypical conditions].
Length = 467
Score = 65.6 bits (160), Expect = 1e-13
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G + +N+ + PAL G+++++KPS+ L+ + +IM EAG+P GV N
Sbjct: 135 GVCVGIGAWNYPLQIASWKIAPALAAGNAMVFKPSENTPLTALKVAEIMEEAGLPKGVFN 194
Query: 92 FVPADGPVFGDTITASPYLAGINFTGSVP 120
V DG G + P +A ++FTG VP
Sbjct: 195 VVQGDGAEVGPLLVNHPDVAKVSFTGGVP 223
>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like. The 6-oxolauric acid dehydrogenase
(CddD) from Rhodococcus ruber SC1 which converts
6-oxolauric acid to dodecanedioic acid, and the aldehyde
dehydrogenase (locus SSP0762) from Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305 and other
similar sequences, are included in this CD.
Length = 466
Score = 65.6 bits (161), Expect = 1e-13
Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
Query: 33 GFVAAVSPFNFTA--IGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 89
G ++P+N+ I +A PAL G +V+ KPS+ A LS + +I+ EAG+P GV
Sbjct: 132 GVCGLITPWNWPLNQIVLKVA--PALAAGCTVVLKPSEVAPLSAIILAEILDEAGLPAGV 189
Query: 90 VNFVPADGPVFGDTITASPYLAGINFTGS 118
N V DGPV G+ ++A P + ++FTGS
Sbjct: 190 FNLVNGDGPVVGEALSAHPDVDMVSFTGS 218
>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent
phenylacetaldehyde dehydrogenase PadA-like.
NAD+-dependent, homodimeric, phenylacetaldehyde
dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia
coli involved in the catabolism of 2-phenylethylamine,
and other related sequences, are present in this CD.
Also included is the Pseudomonas fluorescens ST StyD
PADH involved in styrene catabolism, the Sphingomonas
sp. LB126 FldD protein involved in fluorene degradation,
and the Novosphingobium aromaticivorans NahF
salicylaldehyde dehydrogenase involved in the
NAD+-dependent conversion of salicylaldehyde to
salicylate.
Length = 477
Score = 65.2 bits (159), Expect = 1e-13
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G VA + P+NF+ + AL G +++ KPS+ L+ + ++ EAG+P GV+N
Sbjct: 144 GVVAGIVPWNFSVMIAVWKIGAALATGCTIVIKPSEFTPLTLLRVAELAKEAGIPDGVLN 203
Query: 92 FVPADGPVFGDTITASPYLAGINFTGSVP 120
V G V G + + P +A ++FTGSV
Sbjct: 204 VVNGKGAV-GAQLISHPDVAKVSFTGSVA 231
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305 and also, the Mycobacterium
tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence;
and other similar sequences, are included in this CD.
Length = 459
Score = 65.0 bits (159), Expect = 2e-13
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 33 GFVAAVSPFNFTAIGGNLA-YTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVV 90
G VAA++P+NF NLA PAL G++V+ KP+ LS + +I+ E +P GVV
Sbjct: 125 GVVAAITPWNF-PFFLNLAKLAPALAAGNTVVLKPAPDTPLSALLLGEIIAETDLPAGVV 183
Query: 91 NFVPADGPVFGDTITASPYLAGINFTGS 118
N V G+ +T P + ++FTGS
Sbjct: 184 NVVTGSDNAVGEALTTDPRVDMVSFTGS 211
>gnl|CDD|143414 cd07095, ALDH_SGSD_AstD, N-succinylglutamate 5-semialdehyde
dehydrogenase, AstD-like. N-succinylglutamate
5-semialdehyde dehydrogenase or succinylglutamic
semialdehyde dehydrogenase (SGSD, E. coli AstD,
EC=1.2.1.71) involved in L-arginine degradation via the
arginine succinyltransferase (AST) pathway and catalyzes
the NAD+-dependent reduction of succinylglutamate
semialdehyde into succinylglutamate.
Length = 431
Score = 64.2 bits (157), Expect = 3e-13
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 25 SLRYRGLDGFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEA 83
LR+R G +A PFNF N PAL+ G++V++KPS+ + ++ EA
Sbjct: 92 VLRHRPH-GVMAVFGPFNFPGHLPNGHIVPALLAGNTVVFKPSELTPAVAELMVELWEEA 150
Query: 84 GVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSV 119
G+PPGV+N V G+ + A + G+ FTGS
Sbjct: 151 GLPPGVLNLVQGGRET-GEALAAHEGIDGLLFTGSA 185
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 63.6 bits (155), Expect = 4e-13
Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 33 GFVAAVSPFNF--TAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 89
G V A++PFNF + LA PA+ G V+ KP+ LS + KI++EAGVP GV
Sbjct: 125 GVVLAITPFNFPLNLVAHKLA--PAIATGCPVVLKPASKTPLSALELAKILVEAGVPEGV 182
Query: 90 VNFVPADGPVFGDTITASPYLAGINFTGSVP 120
+ V + V GD A +A ++FTGS
Sbjct: 183 LQVVTGEREVLGDAFAADERVAMLSFTGSAA 213
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 63.4 bits (155), Expect = 6e-13
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 33 GFVAAVSPFN---FTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 88
G V ++P+N TA+ A PAL+ G++V+ K S L EAG+P G
Sbjct: 118 GVVLIIAPWNYPYLTAVN---AVIPALLAGNAVILKHSPQTPLCGERFAAAFAEAGLPEG 174
Query: 89 VVNFVPADGPVFGDTITASPYLAGINFTGSV 119
V + + A P + ++FTGSV
Sbjct: 175 VFQVLHLSHET-SAALIADPRIDHVSFTGSV 204
>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 63.2 bits (154), Expect = 7e-13
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G V A++P+NF PAL G +V+ KPS+ L+ ++ ++AG+PPGV+N
Sbjct: 162 GVVGAITPWNFPLAMITRKVGPALAAGCTVVVKPSELTPLTALAAAELALQAGIPPGVLN 221
Query: 92 FVPADGPVFGDTITASPYLAGINFTGSVP 120
V D P GD + ASP + I FTGS
Sbjct: 222 VVMGDAPEIGDALLASPKVRKITFTGSTA 250
>gnl|CDD|143423 cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like.
Salicylaldehyde dehydrogenase (DoxF, SaliADH,
EC=1.2.1.65) involved in the upper naphthalene catabolic
pathway of Pseudomonas strain C18 and other similar
sequences are present in this CD.
Length = 432
Score = 63.0 bits (154), Expect = 8e-13
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G V ++P+N I G A L G++V+ K S+ + +++ I ++ EAG+P GV+N
Sbjct: 100 GVVLGIAPWNAPVILGTRAIAYPLAAGNTVVLKASELSPRTHWLIGRVFHEAGLPKGVLN 159
Query: 92 FV---PADGPVFGDTITASPYLAGINFTGS 118
V P D P + + A P + +NFTGS
Sbjct: 160 VVTHSPEDAPEVVEALIAHPAVRKVNFTGS 189
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 62.2 bits (152), Expect = 1e-12
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G + P+NF + PAL G++V+ KP++ LS + +++ EAG PPGVVN
Sbjct: 143 GVCGQIIPWNFPLLMLAWKLAPALAAGNTVVLKPAEQTPLSALYLAELIKEAGFPPGVVN 202
Query: 92 FVPADGPVFGDTITASPYLAGINFTGS 118
VP GP G I++ + I FTGS
Sbjct: 203 IVPGFGPTAGAAISSHMDVDKIAFTGS 229
>gnl|CDD|236989 PRK11809, putA, trifunctional transcriptional regulator/proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1318
Score = 61.9 bits (151), Expect = 2e-12
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 33 GFVAAVSPFNFT-AI-GGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 89
G V +SP+NF AI G +A AL G+SVL KP++ L +I++EAGVP GV
Sbjct: 770 GPVVCISPWNFPLAIFTGQVA--AALAAGNSVLAKPAEQTPLIAAQAVRILLEAGVPAGV 827
Query: 90 VNFVPADGPVFGDTITASPYLAGINFTGS 118
V +P G G + A + G+ FTGS
Sbjct: 828 VQLLPGRGETVGAALVADARVRGVMFTGS 856
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 61.4 bits (150), Expect = 2e-12
Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G VAA+ P+N L PAL G +V+ KPS L Y + + EAG+PPGVVN
Sbjct: 139 GVVAAIVPWNAPLFLAALKIAPALAAGCTVVLKPSPETPLDAYLLAEAAEEAGLPPGVVN 198
Query: 92 FVPADGPVFGDTITASPYLAGINFTGS 118
VPAD V G+ + P + ++FTGS
Sbjct: 199 VVPADREV-GEYLVRHPGVDKVSFTGS 224
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 61.2 bits (149), Expect = 3e-12
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 54 PALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAG 112
PAL G+++++KPS L+ + +I+ EAG+P GV N V G G + P +A
Sbjct: 139 PALACGNAMVYKPSPFTPLTALLLAEILTEAGLPDGVFNVVQGGGET-GQLLCEHPDVAK 197
Query: 113 INFTGSVP 120
++FTGSVP
Sbjct: 198 VSFTGSVP 205
>gnl|CDD|143470 cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase
II-like. NAD-dependent, benzaldehyde dehydrogenase II
(XylC, BenzADH, EC=1.2.1.28) is involved in the
oxidation of benzyl alcohol to benzoate. In
Acinetobacter calcoaceticus, this process is carried out
by the chromosomally encoded, benzyl alcohol
dehydrogenase (xylB) and benzaldehyde dehydrogenase II
(xylC) enzymes; whereas in Pseudomonas putida they are
encoded by TOL plasmids.
Length = 443
Score = 61.2 bits (149), Expect = 3e-12
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPS-DTALLSNYTIYKIMIEAGVPPGVV 90
G V +SPFNF I + PAL +G++V+ KP T + I ++ EAG+P GV+
Sbjct: 112 GVVGVISPFNFPLILAMRSVAPALALGNAVVLKPDPRTPVSGGVVIARLFEEAGLPAGVL 171
Query: 91 NFVPADGPVFGDTITASPYLAGINFTGSVP 120
+ +P G+ + P +A I+FTGS
Sbjct: 172 HVLPGGADA-GEALVEDPNVAMISFTGSTA 200
>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase
1 and 2, ALDH family 10A8 and 10A9-like. Present in
this CD are the Arabidopsis betaine aldehyde
dehydrogenase (BADH) 1 (chloroplast) and 2
(mitochondria), also known as, aldehyde dehydrogenase
family 10 member A8 and aldehyde dehydrogenase family 10
member A9, respectively, and are putative dehydration-
and salt-inducible BADHs (EC 1.2.1.8) that catalyze the
oxidation of betaine aldehyde to the compatible solute
glycine betaine.
Length = 456
Score = 61.2 bits (149), Expect = 4e-12
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 6 AKELTKYQPISED-PKSTLNSLRYRGLDGFVAAVSPFNFTAIGGNLAYTPALM-GSSVLW 63
A++L + P + R G V ++P+NF + PAL G +V+
Sbjct: 94 AEQLDAKAERAVPLPSEDFKARVRREPVGVVGLITPWNFPLLMAAWKVAPALAAGCTVVL 153
Query: 64 KPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
KPS+ L+ + +I EAG+PPGV+N V G G + A P + I+FTGS
Sbjct: 154 KPSELTSLTELELAEIAAEAGLPPGVLNVVTGTGDEAGAPLAAHPGIDKISFTGSTA 210
>gnl|CDD|233325 TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carboxylate
dehydrogenase (PutA C-terminal domain). This model
represents one of several related branches of
delta-1-pyrroline-5-carboxylate dehydrogenase. Members
of this branch are the C-terminal domain of the PutA
bifunctional proline dehydrogenase /
delta-1-pyrroline-5-carboxylate dehydrogenase [Energy
metabolism, Amino acids and amines].
Length = 500
Score = 60.7 bits (147), Expect = 5e-12
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 33 GFVAAVSPFNFT-AIGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G +SP+NF AI G++V+ KP++ L Y ++M EAG P G +
Sbjct: 162 GVFVCISPWNFPLAIFTGQISAALAAGNTVIAKPAEQTSLIAYRAVELMQEAGFPAGTIQ 221
Query: 92 FVPADGPVFGDTITASPYLAGINFTGS 118
+P G G +T+ P +AG+ FTGS
Sbjct: 222 LLPGRGADVGAALTSDPRIAGVAFTGS 248
>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine
aldehyde dehydrogenase-like. Included in this CD is the
NAD+-dependent, betaine aldehyde dehydrogenase (BADH,
GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the
synthesis of the osmoprotectant glycine betaine from
choline or glycine betaine aldehyde.
Length = 482
Score = 60.4 bits (147), Expect = 7e-12
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G ++P+N+ + PAL G++V+ KPS+ L+ +++++ EAG+P GVVN
Sbjct: 136 GVCGLITPWNYPLLQAAWKLAPALAAGNTVVIKPSEVTPLTTIALFELIEEAGLPAGVVN 195
Query: 92 FVPADGPVFGDTITASPYLAGINFTGS 118
V G G + SP + ++FTG
Sbjct: 196 LVTGSGATVGAELAESPDVDLVSFTGG 222
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 59.2 bits (144), Expect = 1e-11
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 33 GFVAAVSPFNFTA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 89
G + P+N+ G ++A PAL G++V+ KP++ A L+ + ++ EAG+P G
Sbjct: 119 GVTGHIIPWNYPLQITGRSVA--PALAAGNAVVVKPAEDAPLTALRLAELAEEAGLPAGA 176
Query: 90 VNFVPADGPVFGDTITASPYLAGINFTGSVP 120
+N V G G + A P + I+FTGSV
Sbjct: 177 LNVVTGLGAEAGAALVAHPGVDHISFTGSVE 207
>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.
Length = 488
Score = 59.5 bits (145), Expect = 1e-11
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 54 PAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAG 112
PAL G+++++KPS+ L+ + +I EAG+P GV N V DG V G +T P +A
Sbjct: 165 PALAAGNAMIFKPSEVTPLTALKLAEIYTEAGLPDGVFNVVQGDGRV-GAWLTEHPDIAK 223
Query: 113 INFTGSVP 120
++FTG VP
Sbjct: 224 VSFTGGVP 231
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 59.2 bits (144), Expect = 2e-11
Identities = 38/95 (40%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 28 YRGLDGFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKP-SDTALLSNYTIYKIMIEAGV 85
YR G V +SP+NF + PAL +G++V+ KP SDT + + KI EAG+
Sbjct: 127 YREPLGVVGVISPWNFPLHLSMRSVAPALALGNAVVLKPASDTPITGGLLLAKIFEEAGL 186
Query: 86 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
P GV+N V G GD P I+FTGS P
Sbjct: 187 PKGVLNVVVGAGSEIGDAFVEHPVPRLISFTGSTP 221
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 57.5 bits (140), Expect = 5e-11
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 15 ISEDPKSTLNSLRYRGLDGFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSN 73
I +D + LR + L G VAA+ P+NF + PAL+ G++V+ KPS L
Sbjct: 100 IEDDDTRRV-ELRRKPL-GVVAAIVPWNFPLLLAAWKIAPALLAGNTVVLKPSPFTPLCT 157
Query: 74 YTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
+ ++ E +PPGV+N V + G +T+ P + I+FTGS
Sbjct: 158 LKLGELAQEV-LPPGVLNVVSGGDEL-GPALTSHPDIRKISFTGSTA 202
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 57.6 bits (140), Expect = 7e-11
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 54 PAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAG 112
PAL G++V+ KPS+ L+ + + ++ EAG+PPGVVN V GP G + A P +
Sbjct: 140 PALAFGNTVVLKPSEWTPLTAWLLAELANEAGLPPGVVNVVHGFGPEAGAALVAHPDVDL 199
Query: 113 INFTGSVP 120
I+FTG
Sbjct: 200 ISFTGETA 207
>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. Succinic
semialdehyde dehydrogenase is one of three enzymes
constituting 4-aminobutyrate (GABA) degradation in both
prokaryotes and eukaryotes, catalyzing the
(NAD(P)+)-dependent catabolism reaction of succinic
semialdehyde to succinate for metabolism by the citric
acid cycle. The EC number depends on the cofactor:
1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and
1.2.1.16 if both can be used. In Escherichia coli,
succinic semialdehyde dehydrogenase is located in an
unidirectionally transcribed gene cluster encoding
enzymes for GABA degradation and is suggested to be
cotranscribed with succinic semialdehyde transaminase
from a common promoter upstream of SSADH. Similar gene
arrangements can be found in characterized Ralstonia
eutropha and the genome analysis of Bacillus subtilis.
Prokaryotic succinic semialdehyde dehydrogenases
(1.2.1.16) share high sequence homology to characterized
succinic semialdehyde dehydrogenases from rat and human
(1.2.1.24), exhibiting conservation of proposed cofactor
binding residues, and putative active sites (G-237 &
G-242, C-293 & G-259 respectively of rat SSADH).
Eukaryotic SSADH enzymes exclusively utilize NAD+ as a
cofactor, exhibiting little to no NADP+ activity. While
a NADP+ preference has been detected in prokaryotes in
addition to both NADP+- and NAD+-dependencies as in
E.coli, Pseudomonas, and Klebsiella pneumoniae. The
function of this alternative SSADH currently is unknown,
but has been suggested to play a possible role in
4-hydroxyphenylacetic degradation. Just outside the
scope of this model, are several sequences belonging to
clades scoring between trusted and noise. These
sequences may be actual SSADH enzymes, but lack
sufficiently close characterized homologs to make a
definitive assignment at this time. SSADH enzyme belongs
to the aldehyde dehydrogenase family (pfam00171),
sharing a common evolutionary origin and enzymatic
mechanism with lactaldehyde dehydrogenase. Like in
lactaldehyde dehydrogenase and succinate semialdehyde
dehydrogenase, the mammalian catalytic glutamic acid and
cysteine residues are conserved in all the enzymes of
this family (PS00687, PS00070) [Central intermediary
metabolism, Other].
Length = 448
Score = 57.4 bits (139), Expect = 8e-11
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G AA++P+NF A AL G +V+ KP++ LS + ++ +AG+P GV+N
Sbjct: 119 GVCAAITPWNFPAAMITRKAGAALAAGCTVVVKPAEQTPLSALALARLAEQAGIPKGVLN 178
Query: 92 FVPAD-GPVFGDTITASPYLAGINFTGSVP 120
+ G+ +T SP + I+FTGS
Sbjct: 179 VITGSRAKEVGNVLTTSPLVRKISFTGSTN 208
>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional.
Length = 494
Score = 56.1 bits (135), Expect = 2e-10
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G +AA+ P+NF + PAL G+SV+ KPS+ + LS + + EAG+P GV+N
Sbjct: 159 GVIAAIVPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLN 218
Query: 92 FVPADGPVFGDTITASPYLAGINFTGS 118
V G G ++ + I FTGS
Sbjct: 219 VVTGFGHEAGQALSRHNDIDAIAFTGS 245
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 55.8 bits (135), Expect = 3e-10
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 33 GFVAAVSPFN--FTAIGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVV 90
G VA + FN +A P G++V+ KP + A LS + ++ E +PPGV
Sbjct: 118 GVVARIVAFNHPLMFAAAKIA-APLAAGNTVVVKPPEQAPLSALRLAELAREV-LPPGVF 175
Query: 91 NFVPADGPVFGDTITASPYLAGINFTGSVP 120
N +P DG G + P + I GSVP
Sbjct: 176 NILPGDGATAGAALVRHPDVKRIALIGSVP 205
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in valine
metabolism and catalyses the NAD+- and CoA-dependent
oxidation of methylmalonate semialdehyde into
propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Length = 478
Score = 55.2 bits (134), Expect = 4e-10
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G VA ++PFNF A+ + A+ G++ + KPS+ + + +++ EAG+P GV+N
Sbjct: 138 GVVAGITPFNFPAMIPLWMFPMAIACGNTFVLKPSERVPGAAMRLAELLQEAGLPDGVLN 197
Query: 92 FVPADGPVFGDTITASPYLAGINFTGSVP 120
V + + P + ++F GS P
Sbjct: 198 VVHGGKEA-VNALLDHPDIKAVSFVGSTP 225
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 55.0 bits (133), Expect = 4e-10
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G + P+NF + PAL G++V+ KP++ L+ + ++ EAG PPGVVN
Sbjct: 147 GVCGQIIPWNFPLLMAAWKLAPALACGNTVVLKPAEQTPLTALYLASLIKEAGFPPGVVN 206
Query: 92 FVPADGPVFGDTITASPYLAGINFTGS 118
VP GP G I++ P + + FTGS
Sbjct: 207 VVPGYGPTAGAAISSHPDIDKVAFTGS 233
>gnl|CDD|181873 PRK09457, astD, succinylglutamic semialdehyde dehydrogenase;
Reviewed.
Length = 487
Score = 55.0 bits (133), Expect = 5e-10
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 26 LRYRGLDGFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAG 84
LR+R G VA P+NF N PAL+ G++V++KPS+ K+ +AG
Sbjct: 130 LRHRPH-GVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWVAELTVKLWQQAG 188
Query: 85 VPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
+P GV+N V G G + A P + G+ FTGS
Sbjct: 189 LPAGVLNLVQG-GRETGKALAAHPDIDGLLFTGS 221
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 54.7 bits (132), Expect = 6e-10
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G + P+N+ PAL G++V+ KP++ LS ++ EAG PPGVVN
Sbjct: 146 GVCGQIIPWNYPLAMAAWKLAPALAAGNTVVIKPAENTPLSLLYFANLVKEAGFPPGVVN 205
Query: 92 FVPADGPVFGDTITASPYLAGINFTGS 118
+P G V G + P + I FTGS
Sbjct: 206 IIPGYGAVAGSALAEHPDVDKIAFTGS 232
>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
dehydrogenase-like. Included in this CD is the
L-sorbosone dehydrogenase (SNDH) from Gluconobacter
oxydans UV10. In G. oxydans, D-sorbitol is converted to
2-keto-L-gulonate (a precursor of L-ascorbic acid) in
sequential oxidation steps catalyzed by a FAD-dependent,
L-sorbose dehydrogenase and an NAD(P)+-dependent,
L-sorbosone dehydrogenase.
Length = 454
Score = 53.5 bits (129), Expect = 1e-09
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 33 GFVAAVSPFNFTA--IGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVV 90
G V ++P+NF + L + A G +V+ KPS+ + + +++IEAG+P GVV
Sbjct: 121 GVVGIITPWNFPFLILSQKLPFALA-AGCTVVVKPSEFTSGTTLMLAELLIEAGLPAGVV 179
Query: 91 NFVPADGPVFGDTITASPYLAGINFTGSVP 120
N V G G +T P + ++FTGS
Sbjct: 180 NIVTGYGATVGQAMTEHPDVDMVSFTGSTR 209
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present in
this CD. The active site cysteine and glutamate residues
are not conserved in the human ALDH16A1 protein
sequence.
Length = 480
Score = 53.6 bits (129), Expect = 1e-09
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G V + P+NF + PAL MG++V+ KP++ L+ +I EAG+PPGV+N
Sbjct: 149 GVVGQIVPWNFPLLMLAWKICPALAMGNTVVLKPAEYTPLTALLFAEICAEAGLPPGVLN 208
Query: 92 FVPADGPVFGDTITASPYLAGINFTGSVP 120
V +G FG + P + + FTGS
Sbjct: 209 IVTGNGS-FGSALANHPGVDKVAFTGSTE 236
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
the pipecolic acid pathway of lysine catabolism,
catalyzing the oxidation of alpha-aminoadipic
semialdehyde to alpha-aminoadipate. Arabidopsis
thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 53.0 bits (128), Expect = 2e-09
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 33 GFVAAVSPFNF-TAIGGNLAYTPALMGSSVLWKPSDTALLSNYTIYKIMIEA----GVPP 87
G V ++ FNF A+ G A + G+ V+WKPS T L+ + KI+ G+P
Sbjct: 134 GVVGVITAFNFPVAVWGWNAAIALVCGNVVVWKPSPTTPLTAIAVTKIVARVLEKNGLPG 193
Query: 88 GVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
+ + V V G+ + P + ++FTGS
Sbjct: 194 AIASLVCGGADV-GEALVKDPRVPLVSFTGSTA 225
>gnl|CDD|143411 cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent
gamma-aminobutyraldehyde dehydrogenase YdcW-like.
NAD+-dependent, tetrameric, gamma-aminobutyraldehyde
dehydrogenase (ABALDH), YdcW of Escherichia coli K12,
catalyzes the oxidation of gamma-aminobutyraldehyde to
gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl
medium-chain aldehydes, but with a lower catalytic
efficiency.
Length = 450
Score = 53.1 bits (128), Expect = 2e-09
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G VA ++P+N+ + PAL G++V+ KPS+T L+ + ++ E +PPGVVN
Sbjct: 120 GVVAQIAPWNYPLMMAAWKIAPALAAGNTVVLKPSETTPLTTLLLAELAAE-VLPPGVVN 178
Query: 92 FVPADGPVFGDTITASPYLAGINFTGSV 119
V G GD + A P + ++ TGSV
Sbjct: 179 VVCGGGASAGDALVAHPRVRMVSLTGSV 206
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 52.5 bits (126), Expect = 4e-09
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 13 QPISEDPKSTLNSLRYRGLDGFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALL 71
Q I D K L R+ + G + P+NF + PAL G++++ KPS+ L
Sbjct: 128 QVIETDIK-KLTYTRHEPI-GVCGQIIPWNFPLLMCAWKIAPALAAGNTIVLKPSELTPL 185
Query: 72 SNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
S + K++ EAG PPGV+N V G G+ I++ + + FTGS
Sbjct: 186 SALYMTKLIPEAGFPPGVINVVSGYGRTCGNAISSHMDIDKVAFTGS 232
>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase.
Length = 503
Score = 52.0 bits (125), Expect = 5e-09
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G V ++P+N+ + PAL G + + KPS+ A ++ + I E G+PPGV+N
Sbjct: 153 GVVGLITPWNYPLLMATWKVAPALAAGCTAVLKPSELASVTCLELADICREVGLPPGVLN 212
Query: 92 FVPADGPVFGDTITASPYLAGINFTGS 118
V G G + + P + I FTGS
Sbjct: 213 VVTGLGTEAGAPLASHPGVDKIAFTGS 239
>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde
dehydrogenase. This model represents the dehydrogenase
responsible for the conversion of
5-carboxymethyl-2-hydroxymuconate semialdehyde to
5-carboxymethyl-2-hydroxymuconate (a tricarboxylic
acid). This is the step in the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate
following the oxidative opening of the aromatic ring.
Length = 488
Score = 51.7 bits (124), Expect = 6e-09
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G V ++P+N + PAL G++V+ KP++ + L+ + +I EAG+P GV N
Sbjct: 137 GPVGLITPWNAPFMLSTWKIAPALAFGNTVVLKPAEWSPLTAARLAEIAKEAGLPDGVFN 196
Query: 92 FVPADGPVFGDTITASPYLAGINFTGS 118
V G G + A P + ++FTG
Sbjct: 197 LVHGFGEEAGKALVAHPDVKAVSFTGE 223
>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde
dehydrogenase PhpJ-like. Putative phosphonoformaldehyde
dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog
reportedly involved in the biosynthesis of
phosphinothricin tripeptides in Streptomyces
viridochromogenes DSM 40736, and similar sequences are
included in this CD.
Length = 451
Score = 51.6 bits (124), Expect = 7e-09
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 33 GFVAAVSPFNFTAIGGNLAYT---PALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 88
G V A++PFN N PA+ + ++ KPS+ LS + ++ EAG+PP
Sbjct: 122 GVVLAITPFNHPL---NQVAHKIAPAIAANNRIVLKPSEKTPLSAIYLADLLYEAGLPPD 178
Query: 89 VVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
+++ V + GD + P + + FTG V
Sbjct: 179 MLSVVTGEPGEIGDELITHPDVDLVTFTGGVA 210
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 51.4 bits (124), Expect = 8e-09
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 13/92 (14%)
Query: 33 GFVAAVSPFNF---TAIGGNLAYTPALM-GSSVLWKP-SDTALLSNYTIYKIMIEAGVPP 87
G V +SP+N+ A+ + PAL+ G++V+ KP S T L + + +++ EAG+P
Sbjct: 156 GVVGVISPWNYPLTLAVSDAI---PALLAGNAVVLKPDSQTPLTALAAV-ELLYEAGLPR 211
Query: 88 GVVNFVPADGPVFGDTITA-SPYLAGINFTGS 118
+ V GPV G + + YL FTGS
Sbjct: 212 DLWQVVTGPGPVVGTALVDNADYLM---FTGS 240
>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase,
ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase
(FTHFDH, EC=1.5.1.6), also known as aldehyde
dehydrogenase family 1 member L1 (ALDH1L1) in humans, is
a multi-domain homotetramer with an N-terminal formyl
transferase domain and a C-terminal ALDH domain. FTHFDH
catalyzes an NADP+-dependent dehydrogenase reaction
resulting in the conversion of 10-formyltetrahydrofolate
to tetrahydrofolate and CO2. The ALDH domain is also
capable of the oxidation of short chain aldehydes to
their corresponding acids.
Length = 486
Score = 51.3 bits (123), Expect = 9e-09
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPA---LMGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 89
G V P+N+ + LA+ A G++V+ KP+ L+ ++ ++AG P GV
Sbjct: 149 GVCGIVIPWNYPLM--MLAWKMAACLAAGNTVVLKPAQVTPLTALKFAELTVKAGFPKGV 206
Query: 90 VNFVPADGPVFGDTITASPYLAGINFTGSVP 120
+N +P G + G ++ P + + FTGS P
Sbjct: 207 INILPGSGSLVGQRLSDHPDVRKLGFTGSTP 237
>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4,
B7, C4-like. Included in this CD is the Arabidosis
aldehyde dehydrogenase family 2 members B4 and B7
(EC=1.2.1.3), which are mitochondrial homotetramers
that oxidize acetaldehyde and glycolaldehyde, but not
L-lactaldehyde. Also in this group, is the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde.
Length = 476
Score = 51.0 bits (122), Expect = 1e-08
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G V + P+NF + PAL G++++ KP++ LS K+ EAG+P GV+N
Sbjct: 143 GVVGQIIPWNFPLLMFAWKVGPALACGNTIVLKPAEQTPLSALLAAKLAAEAGLPDGVLN 202
Query: 92 FVPADGPVFGDTITASPYLAGINFTGS 118
V GP G I + + + FTGS
Sbjct: 203 IVTGFGPTAGAAIASHMDVDKVAFTGS 229
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation [Energy
metabolism, Other].
Length = 481
Score = 50.5 bits (121), Expect = 2e-08
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 29 RGLDGFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPP 87
R G V +SP+N + PAL G++V+ KPS+ + + ++M GVP
Sbjct: 137 RKPLGVVGVISPWNLPLLLMTWKVGPALACGNTVVVKPSEETPGTATLLGEVMNAVGVPK 196
Query: 88 GVVNFVPADGP-VFGDTITASPYLAGINFTG 117
GV N V GP G+ +T P + I FTG
Sbjct: 197 GVYNVVHGFGPDSAGEFLTRHPGVDAITFTG 227
>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like.
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was
first described in the moss Tortula ruralis and is
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and ALDH21A1 expression represents a
unique stress tolerance mechanism. So far, of plants,
only the bryophyte sequence has been observed, but
similar protein sequences from bacteria and archaea are
also present in this CD.
Length = 452
Score = 49.6 bits (119), Expect = 4e-08
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 33 GFVAAVSPFNFTAIGGNLA---YTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 88
G V+A++PFNF NL PA+ G + KP+ LS + +++ E G+P G
Sbjct: 125 GPVSAITPFNFPL---NLVAHKVAPAIAAGCPFVLKPASRTPLSALILGEVLAETGLPKG 181
Query: 89 VVNFVPADGPVFGDTITASPYLAGINFTGS 118
+ +P D + + ++FTGS
Sbjct: 182 AFSVLPCSRDD-ADLLVTDERIKLLSFTGS 210
>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.
Length = 409
Score = 49.3 bits (118), Expect = 4e-08
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 33 GFVAAVSPFNFT--AIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 89
G + P+NF I +A PAL+ G++++ KPS+ + KI+ E G+P GV
Sbjct: 73 GVTTGILPWNFPFFLIARKMA--PALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPKGV 130
Query: 90 VNFVPADGPVFGDTITASPYLAGINFTGSVP 120
N V G G + +P +A ++ TGSV
Sbjct: 131 FNLVLGRGETVGQELAGNPKVAMVSMTGSVS 161
>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II and Staphylococcus aureus
AldA1 (SACOL0154)-like. Included in this CD is the
NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII,
AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus
H16 involved in the catabolism of acetoin and ethanol,
and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane, as
well as, the uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences.
Length = 480
Score = 49.3 bits (118), Expect = 5e-08
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 15 ISEDPKSTLNSLRYRGLDGFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSN 73
+SE + TL+ + L G V + P+NF + PAL G++V+ KP+ LS
Sbjct: 121 LSEIDEDTLSYHFHEPL-GVVGQIIPWNFPLLMAAWKLAPALAAGNTVVLKPASQTPLSI 179
Query: 74 YTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
+ ++ I +P GVVN V G G + + P +A + FTGS
Sbjct: 180 LVLMEL-IGDLLPKGVVNVVTGFGSEAGKPLASHPRIAKLAFTGS 223
>gnl|CDD|132284 TIGR03240, arg_catab_astD, succinylglutamic semialdehyde
dehydrogenase. Members of this protein family are
succinylglutamic semialdehyde dehydrogenase (EC
1.2.1.71), the fourth enzyme in the arginine
succinyltransferase (AST) pathway for arginine
catabolism [Energy metabolism, Amino acids and amines].
Length = 484
Score = 49.3 bits (118), Expect = 5e-08
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 25 SLRYRGLDGFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEA 83
LR+R G VA P+NF N PAL+ G++V++KPS+ K+ +A
Sbjct: 127 VLRHRP-HGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWVAEETVKLWEKA 185
Query: 84 GVPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
G+P GV+N V G + A P + G+ FTGS
Sbjct: 186 GLPAGVLNLVQG-ARETGVALAAHPDIDGLLFTGS 219
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 48.8 bits (117), Expect = 7e-08
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 33 GFVAAVSPFNF---TAIGGNLAYTPALM-GSSVLWKP-SDTALLSNYTIYKIMIEAGVPP 87
G V +SP+N+ A+ + PAL+ G++V+ KP S TAL + + + +++IEAG+P
Sbjct: 120 GVVGVISPWNYPLTLAVSDAI---PALLAGNAVVLKPDSQTALTALWAV-ELLIEAGLPR 175
Query: 88 GVVNFVPADGPVFGDTITA-SPYLAGINFTGSVP 120
+ V G G I + Y+ FTGS
Sbjct: 176 DLWQVVTGPGSEVGGAIVDNADYVM---FTGSTA 206
>gnl|CDD|132294 TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde
dehydrogenase. This family of genes are members of the
pfam00171 NAD-dependent aldehyde dehydrogenase family.
These genes are observed in Ralstonia eutropha JMP134,
Sinorhizobium meliloti 1021, Burkholderia mallei ATCC
23344, Burkholderia thailandensis E264, Burkholderia
cenocepacia AU 1054, Burkholderia pseudomallei K96243
and 1710b, Burkholderia xenovorans LB400, Burkholderia
sp. 383 and Polaromonas sp. JS666 in close proximity to
the PhnW gene (TIGR02326) encoding 2-aminoethyl
phosphonate aminotransferase (which generates
phosphonoacetaldehyde) and PhnA (TIGR02335) encoding
phosphonoacetate hydrolase (not to be confused with the
alkylphosphonate utilization operon protein PhnA modeled
by TIGR00686). Additionally, transporters believed to be
specific for 2-aminoethyl phosphonate are often present.
PhnW is, in other organisms, coupled with PhnX
(TIGR01422) for the degradation of phosphonoacetaldehyde
(GenProp0238), but PhnX is apparently absent in each of
the organisms containing this aldehyde reductase. PhnA,
characterized in a strain of Pseudomonas fluorescens
that has not het been genome sequenced, is only rarely
found outside of the PhnW and aldehyde dehydrogenase
context. For instance in Rhodopseudomonas and Bordetella
bronchiseptica, where it is adjacent to transporters
presumably specific for the import of phosphonoacetate.
It seems reasonably certain then, that this enzyme
catalyzes the NAD-dependent oxidation of
phosphonoacetaldehyde to phosphonoacetate, bridging the
metabolic gap between PhnW and PhnA. We propose the name
phosphonoacetaldehyde dehydrogenase and the gene symbol
PhnY for this enzyme.
Length = 472
Score = 47.9 bits (114), Expect = 1e-07
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 31 LDGFVAAVSPFN--FTAIGGNLAYTPALMGSS-VLWKPSDTALLSNYTIYKIMIEAGVPP 87
L G ++A++PFN + +A PA+ ++ ++ KPS+ LS + I+ EAG+PP
Sbjct: 139 LLGVISAITPFNHPMNQVAHKIA--PAIATNNRMVVKPSEKTPLSALYLADILYEAGLPP 196
Query: 88 GVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
++ V D D + +P++ + FTG V
Sbjct: 197 QMLQVVTGDPREIADELITNPHVDLVTFTGGVA 229
>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde
dehydrogenase PsfA (ACA09737)-like. Included in this CD
is the aldehyde dehydrogenase (PsfA, locus ACA09737) of
Pseudomonas putida involved in furoic acid metabolism.
Transcription of psfA was induced in response to
2-furoic acid, furfuryl alcohol, and furfural.
Length = 455
Score = 47.7 bits (114), Expect = 2e-07
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEA-GVPPGVV 90
G + P+N + + PAL G +V+ KP+ N I +I+ E +P GVV
Sbjct: 119 GVAGIIVPWNSPVVLLVRSLAPALAAGCTVVVKPAGQTAQINAAIIRILAEIPSLPAGVV 178
Query: 91 NFVPADGPVFGDTITASPYLAGINFTGS 118
N G + ASP + I+FTGS
Sbjct: 179 NLFTESGSEGAAHLVASPDVDVISFTGS 206
>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I;
Provisional.
Length = 482
Score = 47.6 bits (113), Expect = 2e-07
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G AA++P+NF A PAL G +++ KP+ S + ++ I AG+P GV N
Sbjct: 148 GVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGIPAGVFN 207
Query: 92 FVPADGPVFGDTITASPYLAGINFTGS 118
V G +T++P + ++FTGS
Sbjct: 208 VVTGSAGAVGGELTSNPLVRKLSFTGS 234
>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
Provisional.
Length = 475
Score = 46.8 bits (112), Expect = 3e-07
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G VA+++P+N+ + PAL G++V+ KPS+ L+ + ++ + +PPGV+N
Sbjct: 140 GVVASIAPWNYPLMMAAWKLAPALAAGNTVVLKPSEITPLTALKLAELAADI-LPPGVLN 198
Query: 92 FVPADGPVFGDTITASPYLAGINFTGSVP 120
V G GD + P + ++ TGS+
Sbjct: 199 VVTGRGATVGDALVGHPKVRMVSLTGSIA 227
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 46.7 bits (111), Expect = 3e-07
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G V + P+NF + + PAL G +++ KP++ LS + AGVP GV+N
Sbjct: 160 GVVGHIIPWNFPSTMFFMKVAPALAAGCTMVVKPAEQTPLSALFYAHLAKLAGVPDGVIN 219
Query: 92 FVPADGPVFGDTITASPYLAGINFTGS 118
V GP G I + + ++FTGS
Sbjct: 220 VVTGFGPTAGAAIASHMDVDKVSFTGS 246
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase (1.5.1.35),
also called gamma-aminobutyraldehyde dehydrogenase. This
enzyme can follow putrescine transaminase (EC 2.6.1.82)
for a two-step conversion of putrescine to
gamma-aminobutyric acid (GABA). The member from
Escherichia coli is characterized as a homotetramer that
binds one NADH per momomer. This enzyme belongs to the
medium-chain aldehyde dehydrogenases, and is quite
similar in sequence to the betaine aldehyde
dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 46.9 bits (111), Expect = 3e-07
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G VA+++P+N+ + PAL G+ V+ KPS+ L+ + ++ + P GVVN
Sbjct: 139 GVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDI-FPAGVVN 197
Query: 92 FVPADGPVFGDTITASPYLAGINFTGSV 119
+ G GD +T + ++ TGS+
Sbjct: 198 ILFGRGKTVGDPLTGHEKVRMVSLTGSI 225
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 46.7 bits (111), Expect = 4e-07
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 33 GFVAAVSPFNFTAIGGNLAYT---PALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 88
G V A+ PFN+ NLA + PAL+ G++V+ KP ++ + AG P G
Sbjct: 160 GVVLAIPPFNYPV---NLAVSKIAPALIAGNAVVLKPPTQGAVAALHMVHCFHLAGFPKG 216
Query: 89 VVNFVPADGPVFGDTITASPYLAGINFTG 117
+++ V G GD +T P + I+FTG
Sbjct: 217 LISCVTGKGSEIGDFLTMHPGVNCISFTG 245
>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde
dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde
dehydrogenase of Magnetospirillum gryphiswaldense MSR-1
(MGR_2402) , and other similar sequences, are present in
this CD.
Length = 457
Score = 46.6 bits (111), Expect = 5e-07
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G V A+ P+N + L PAL G++V+ K ++ A L+ + +I+ + +P GV+N
Sbjct: 119 GVVGAILPWNAPLMLAALKIAPALVAGNTVVLKAAEDAPLAVLLLAEILAQV-LPAGVLN 177
Query: 92 FVPADGPVFGDTITASPYLAGINFTGSV 119
+ G G + P + + FTGS
Sbjct: 178 VITGYGEECGAALVDHPDVDKVTFTGST 205
>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus
AldA1 (SACOL0154) aldehyde dehydrogenase-like.
Uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences are present in this CD.
Length = 475
Score = 46.3 bits (110), Expect = 6e-07
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G V + P+NF + PAL G++V+ KPS T LS + KI I+ +P GVVN
Sbjct: 138 GVVGQIIPWNFPFLMAAWKLAPALAAGNTVVIKPSSTTSLSLLELAKI-IQDVLPKGVVN 196
Query: 92 FVPADGPVFGDTITASPYLAGINFTGS 118
V G G+ + P L + FTGS
Sbjct: 197 IVTGKGSKSGEYLLNHPGLDKLAFTGS 223
>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II-like. Included in this CD
is the NAD+-dependent, acetaldehyde dehydrogenase II
(AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes)
eutrophus H16 involved in the catabolism of acetoin and
ethanol, and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane. These
proteins apparently require RpoN factors for expression.
Length = 479
Score = 45.9 bits (109), Expect = 7e-07
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G V + P+NF + PAL G+ V+ KP++ S + ++ I +PPGVVN
Sbjct: 138 GVVGQIIPWNFPLLMATWKLAPALAAGNCVVLKPAEQTPASILVLMEL-IGDLLPPGVVN 196
Query: 92 FVPADGPVFGDTITASPYLAGINFTGS 118
V G G + +S +A + FTG
Sbjct: 197 VVNGFGLEAGKPLASSKRIAKVAFTGE 223
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 44.8 bits (106), Expect = 2e-06
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G + P+NF + PAL G++++ K ++ LS K++ EAG+PPGV+N
Sbjct: 197 GVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYAAKLLHEAGLPPGVLN 256
Query: 92 FVPADGPVFGDTITASPYLAGINFTGS 118
V GP G + + + + FTGS
Sbjct: 257 VVSGFGPTAGAALASHMDVDKLAFTGS 283
>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
Involved in valine catabolism,
methylmalonate-semialdehyde dehydrogenase catalyzes the
irreversible NAD+- and CoA-dependent oxidative
decarboxylation of methylmalonate semialdehyde to
propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase
has been characterized in both prokaryotes and
eukaryotes, functioning as a mammalian tetramer and a
bacterial homodimer. Although similar in monomeric
molecular mass and enzymatic activity, the N-terminal
sequence in P.aeruginosa does not correspond with the
N-terminal sequence predicted for rat liver. Sequence
homology to a variety of prokaryotic and eukaryotic
aldehyde dehydrogenases places MMSDH in the aldehyde
dehydrogenase (NAD+) superfamily (pfam00171), making
MMSDH's CoA requirement unique among known ALDHs.
Methylmalonate semialdehyde dehydrogenase is closely
related to betaine aldehyde dehydrogenase,
2-hydroxymuconic semialdehyde dehydrogenase, and class 1
and 2 aldehyde dehydrogenase. In Bacillus, a highly
homologous protein to methylmalonic acid semialdehyde
dehydrogenase, groups out from the main MMSDH clade with
Listeria and Sulfolobus. This Bacillus protein has been
suggested to be located in an iol operon and/or involved
in myo-inositol catabolism, converting malonic
semialdehyde to acetyl CoA ad CO2. The preceeding
enzymes responsible for valine catabolism are present in
Bacillus, Listeria, and Sulfolobus [Energy metabolism,
Amino acids and amines].
Length = 477
Score = 44.1 bits (104), Expect = 3e-06
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G A ++PFNF A+ + A+ G++ + KPS+ + + ++ EAG P GV+N
Sbjct: 138 GVCAGITPFNFPAMIPLWMFPIAIACGNTFVLKPSEKVPSAAVKLAELFSEAGAPDGVLN 197
Query: 92 FVPADGPVFGDTITASPYLAGINFTGSVP 120
V D D + P + ++F GS P
Sbjct: 198 VVHGD-KEAVDRLLEHPDVKAVSFVGSTP 225
>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with
similarity to Tortula ruralis aldehyde dehydrogenase
ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus
RL0313) with sequence similarity to the moss Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123)
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 455
Score = 42.8 bits (101), Expect = 8e-06
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 33 GFVAAVSPFNFTAIGGNLA---YTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 88
G V A+S FN NL PA+ G V+ KP+ LS ++ EAG+P G
Sbjct: 126 GVVVAISAFNHPL---NLIVHQVAPAIAAGCPVIVKPALATPLSCLAFVDLLHEAGLPEG 182
Query: 89 VVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
VP + V + + P +A +F GS
Sbjct: 183 WCQAVPCENAV-AEKLVTDPRVAFFSFIGSAR 213
>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 1-like.
Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde (SSA) to succinate. SSADH
activity in Mycobacterium tuberculosis (Mtb) is encoded
by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb
GabD1 SSADH1 reportedly is an enzyme of the
gamma-aminobutyrate shunt, which forms a functional link
between two TCA half-cycles by converting
alpha-ketoglutarate to succinate.
Length = 429
Score = 40.9 bits (97), Expect = 4e-05
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 24/100 (24%)
Query: 33 GFVAAVSPFNFT-------AIGGNLAYTPALM-GSSVLWKPSD----TALLSNYTIYKIM 80
G V + P+NF A P LM G++VL K + AL I ++
Sbjct: 98 GVVLGIMPWNFPFWQVFRFAA-------PNLMAGNTVLLKHASNVPGCALA----IEELF 146
Query: 81 IEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
EAG P GV + D + I A P + G+ TGS
Sbjct: 147 REAGFPEGVFQNLLIDSDQV-EAIIADPRVRGVTLTGSER 185
>gnl|CDD|212007 TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase, Rv0768 family.
This family describes a branch of the aldehyde
dehydrogenase (NAD) family (see pfam00171) that includes
Rv0768 from Mycobacterium tuberculosis. All members of
this family belong to species predicted to synthesize
mycofactocin, suggesting that this enzyme or another
upstream or downstream in the same pathway might be
mycofactocin-dependent. However, the taxonomic range of
this family is not nearly broad enough to make that
relationship conclusive [Unknown function, Enzymes of
unknown specificity].
Length = 480
Score = 40.5 bits (95), Expect = 6e-05
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 33 GFVAAVSPFNFT-AIGGNLAYT-PALM-GSSVLWKPS-DTALLSNYTIYKIMIEAGVPPG 88
G V A++P+NF I NLA PAL G++V+ KP+ DT + I PPG
Sbjct: 143 GVVGAITPWNFPHQI--NLAKLGPALAAGNTVVLKPAPDTPWCAAVLGELIAEHTDFPPG 200
Query: 89 VVNFVPADGPVFGDTITASPYLAGINFTGS 118
VVN V + G + P + ++FTGS
Sbjct: 201 VVNIVTSSDHRLGALLAKDPRVDMVSFTGS 230
>gnl|CDD|184426 PRK13968, PRK13968, putative succinate semialdehyde dehydrogenase;
Provisional.
Length = 462
Score = 39.1 bits (91), Expect = 2e-04
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 26 LRYRGLDGFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAG 84
+ YR L G + A+ P+NF P L+ G+ L K + + I ++ +AG
Sbjct: 122 IEYRPL-GTILAIMPWNFPLWQVMRGAVPILLAGNGYLLKHAPNVMGCAQLIAQVFKDAG 180
Query: 85 VPPGVVNFVPADGPVFGDTITASPYLAGINFTGSV 119
+P GV ++ AD I +A + TGSV
Sbjct: 181 IPQGVYGWLNADNDGVSQMIN-DSRIAAVTVTGSV 214
>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp.
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The
4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH)
involved in C30 carotenoid synthesis in Methylomonas sp.
strain 16a and other similar sequences are present in
this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde
into 4,4'-diapolycopene-diacid.
Length = 453
Score = 38.0 bits (89), Expect = 4e-04
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 26 LRYRGLDGFVAAVSPFNF---TAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMI 81
+ YR G V +SP+N+ T +G + PAL G++V+ KPS+ L + +
Sbjct: 115 VEYRPY-GVVGVISPWNYPLLTPMGDII---PALAAGNAVVLKPSEVTPLVGELLAEAWA 170
Query: 82 EAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
AG P GV+ V DG I A + FTGSV
Sbjct: 171 AAGPPQGVLQVVTGDGATGAALIDAGVDK--VAFTGSVA 207
>gnl|CDD|143444 cd07126, ALDH_F12_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH family 12.
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12), family 12: a proline catabolic enzyme of
the aldehyde dehydrogenase (ALDH) protein superfamily.
P5CDH is a mitochondrial enzyme involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. The P5CDH, ALDH12A1
gene, in Arabidopsis, has been identified as an
osmotic-stress-inducible ALDH gene. This CD contains
both Viridiplantae and Alveolata P5CDH sequences.
Length = 489
Score = 37.1 bits (86), Expect = 8e-04
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 28 YRGLDGFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVP 86
YR G VA ++PFNF L AL MG+ L K + +++ G+P
Sbjct: 139 YRWPYGPVAIITPFNFPLEIPALQLMGALFMGNKPLLKVDSKVSVVMEQFLRLLHLCGMP 198
Query: 87 PGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
V+ + +DGP + + FTGS
Sbjct: 199 ATDVDLIHSDGPTMNKILLEANPRM-TLFTGS 229
>gnl|CDD|166060 PLN02419, PLN02419, methylmalonate-semialdehyde dehydrogenase
[acylating].
Length = 604
Score = 34.3 bits (78), Expect = 0.009
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G A + PFNF A+ + A+ G++ + KPS+ ++ + ++ +EAG+P GV+N
Sbjct: 251 GVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASVILAELAMEAGLPDGVLN 310
Query: 92 FV 93
V
Sbjct: 311 IV 312
>gnl|CDD|237016 PRK11903, PRK11903, aldehyde dehydrogenase; Provisional.
Length = 521
Score = 29.7 bits (67), Expect = 0.31
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 29 RGLDGFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKP-SDTALLSNYTIYKIMIEAGV- 85
RG+ F+ A FNF A G PAL+ G V+ KP + TA L+ + K ++ AG+
Sbjct: 149 RGVALFINA---FNFPAWGLWEKAAPALLAGVPVIVKPATATAWLTQRMV-KDVVAAGIL 204
Query: 86 PPGVVNFV 93
P G ++ V
Sbjct: 205 PAGALSVV 212
>gnl|CDD|143398 cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phosphate reductase
(GPR), aldehyde dehydrogenase families 18 and 19.
Gamma-glutamyl phosphate reductase (GPR), a L-proline
biosynthetic pathway (PBP) enzyme that catalyzes the
NADPH dependent reduction of L-gamma-glutamyl
5-phosphate into L-glutamate 5-semialdehyde and
phosphate. The glutamate route of the PBP involves two
enzymatic steps catalyzed by gamma-glutamyl kinase (GK,
EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are
fused into the bifunctional enzyme, ProA or
delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in
plants and animals, whereas they are separate enzymes in
bacteria and yeast. In humans, the P5CS (ALDH18A1), an
inner mitochondrial membrane enzyme, is essential to the
de novo synthesis of the amino acids proline and
arginine. Tomato (Lycopersicon esculentum) has both the
prokaryotic-like polycistronic operons encoding GK and
GPR (PRO1, ALDH19) and the full-length, bifunctional
P5CS (PRO2, ALDH18B1).
Length = 406
Score = 28.9 bits (66), Expect = 0.61
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 58 GSSVLWKPSDTALLSNYTIYKIM----IEAGVPPGVVNFVP 94
G++V+ + AL SN + +I+ EAG+P V +P
Sbjct: 135 GNAVILRGGSEALHSNRALVEIIQEALEEAGLPEDAVQLIP 175
>gnl|CDD|235177 PRK03934, PRK03934, phosphatidylserine decarboxylase;
Provisional.
Length = 265
Score = 27.2 bits (61), Expect = 2.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1 LNAFFAKELTKYQPISEDPK 20
LNA F + L K + EDP
Sbjct: 51 LNALFTRSLKKPREFDEDPN 70
>gnl|CDD|163655 cd07412, MPP_YhcR_N, Bacillus subtilis YhcR endonuclease and
related proteins, N-terminal metallophosphatase domain.
YhcR is a Bacillus subtilis sugar-nonspecific
endonuclease. It cleaves endonucleolytically to yield
nucleotide 3'-monophosphate products, similar to
Staphylococcus aureus micrococcal nuclease. YhcR appears
to be located in the cell wall, and is thought to be a
substrate for a Bacillus subtilis sortase. YhcR is the
major calcium-activated nuclease of B. subtilis. The
N-terminal metallophosphatase domain belongs to a large
superfamily of distantly related metallophosphatases
(MPPs) that includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 288
Score = 26.9 bits (60), Expect = 3.1
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 58 GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGP--VFGDTITASPYLAGINF 115
++V K + T L YTI + GV G + V D P V D + AG+ F
Sbjct: 123 AANVYDKGTGTPALPPYTIKDV---GGVKVGFIGAVTKDTPNLVSPDGV------AGLEF 173
Query: 116 TGSV 119
T V
Sbjct: 174 TDEV 177
>gnl|CDD|233714 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine
methyltransferase. This family represents
5-methyltetrahydrofolate--homocysteine methyltransferase
(EC 2.1.1.13), one of at least three different enzymes
able to convert homocysteine to methionine by
transferring a methyl group on to the sulfur atom. It is
also called the vitamin B12(or cobalamine)-dependent
methionine synthase. Other methionine synthases include
5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase (MetE, EC 2.1.1.14, the
cobalamin-independent methionine synthase) and
betaine-homocysteine methyltransferase [Amino acid
biosynthesis, Aspartate family].
Length = 1178
Score = 27.0 bits (60), Expect = 3.3
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 31 LDGFVAAVSPFNFTAIGGNLAYTPALM 57
++ F+ ++ IG N A P M
Sbjct: 215 IEAFLTSLEHAGIDMIGLNCALGPDEM 241
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 26.3 bits (58), Expect = 4.9
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 32 DGFVAAVSPFNFTA--------IGGNLAYTPALMGSSVLWKPSDTALLSNYTI-YKIM 80
DG SPF FTA +G + AY M ++L + L+ + + Y++M
Sbjct: 442 DGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGHPVKYRMM 499
>gnl|CDD|143447 cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde
Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA)
Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the
NAD(P)+-dependent conversion of KGSA to
alpha-ketoglutarate. This CD contains such sequences as
those seen in Azospirillum brasilense, KGSADH-II
(D-glucarate/D-galactarate-inducible) and KGSADH-III
(hydroxy-L-proline-inducible). Both show similar high
substrate specificity for KGSA and different coenzyme
specificity; KGSADH-II is NAD+-dependent and KGSADH-III
is NADP+-dependent. Also included in this CD is the
NADP(+)-dependent aldehyde dehydrogenase from Vibrio
harveyi which catalyzes the oxidation of long-chain
aliphatic aldehydes to acids.
Length = 454
Score = 26.0 bits (58), Expect = 6.3
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 82 EAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
G+P GV + + G G + P + + FTGS
Sbjct: 163 ATGLPAGVFSLLQGGGREVGVALVKHPAIKAVGFTGSRR 201
>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional.
Length = 407
Score = 26.0 bits (58), Expect = 6.4
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 16/57 (28%)
Query: 19 PKSTLNSLRYRGLDGF---VAAVSPFNFTAIGGNLAYTPALMGSSVLWKPSDTALLS 72
PK +LR GL+ F VA ++P LA A + S W D LL
Sbjct: 229 PKGGYAALRAAGLEAFRERVAELAPE--------LADRVAELKS---W--DDVKLLD 272
>gnl|CDD|225748 COG3207, DIT1, Pyoverdine/dityrosine biosynthesis protein
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 330
Score = 25.7 bits (56), Expect = 7.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 81 IEAGVPPGVVNFVPADGPVFGDTI 104
I+ PG + +DG VF D I
Sbjct: 98 IQLFYAPGAKITICSDGHVFSDLI 121
>gnl|CDD|222544 pfam14105, DUF4278, Domain of unknown function (DUF4278). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria and
viruses. Proteins in this family are typically between
58 and 136 amino acids in length. There is a single
completely conserved residue R that may be functionally
important.
Length = 57
Score = 24.2 bits (53), Expect = 7.0
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 11 KYQPISEDPKSTLNSLRYRGLD 32
Y P + + T +YRG D
Sbjct: 11 DYNPPTVETSETEVGGKYRGQD 32
>gnl|CDD|234685 PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.
Length = 417
Score = 25.4 bits (57), Expect = 9.0
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 58 GSSVLWKPSDTALLSNYTIYKIM----IEAGVPPGVVNFVP 94
G++V+ + A+ SN + ++ EAG+P V V
Sbjct: 141 GNAVILRGGSEAIHSNRALVAVIQEALEEAGLPADAVQLVE 181
>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme is
involved in the biosynthesis of the thiamine precursor
thiazole, and is repressed by thiamine. This family
includes c-thi1, a Citrus gene induced during natural
and ethylene induced fruit maturation and is highly
homologous to plant and yeast thi genes involved in
thiamine biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Thiamine].
Length = 254
Score = 25.2 bits (55), Expect = 9.2
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 53 TPALMGSSVLW-KPSDTALLSN-YTIYKIMIEAGVPPGVVNFVPADGPVFG 101
P L G +W + ++ A+ N + + AG+ V+ +P GP+FG
Sbjct: 186 VPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFG 236
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.409
Gapped
Lambda K H
0.267 0.0845 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,305,592
Number of extensions: 559860
Number of successful extensions: 633
Number of sequences better than 10.0: 1
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 114
Length of query: 120
Length of database: 10,937,602
Length adjustment: 83
Effective length of query: 37
Effective length of database: 7,256,220
Effective search space: 268480140
Effective search space used: 268480140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)