RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1844
(120 letters)
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 182 bits (465), Expect = 2e-56
Identities = 80/119 (67%), Positives = 96/119 (80%), Gaps = 2/119 (1%)
Query: 2 NAFFAKELTKYQPISEDPKSTLNSLRYRGLDGFVAAVSPFNFTAIGGNLAYTPALMGSSV 61
NA FA EL QPIS P + N YRGL+GFVAA+SPFNFTAIGGNLA PALMG+ V
Sbjct: 173 NAKFAVELEGEQPISVPPST--NHTVYRGLEGFVAAISPFNFTAIGGNLAGAPALMGNVV 230
Query: 62 LWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
LWKPSDTA+L++Y +Y+I+ EAG+PP ++ FVPADGP FGDT+T+S +L GINFTGSVP
Sbjct: 231 LWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPTFGDTVTSSEHLCGINFTGSVP 289
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 119 bits (300), Expect = 5e-33
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 2 NAFFAKELTKYQPISEDPKSTLNSLRYRGLDGFVAAVSPFNFT-AIGGNLAYTPALMGSS 60
A EL + + I P N Y + G +SP+NF AI A P + G++
Sbjct: 145 YARQMIELNRGKEILSRP-GEQNRYFYTPM-GVTVTISPWNFALAIMVGTAVAPIVTGNT 202
Query: 61 VLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
V+ KP+ T + +++ +AG+P GV+N+VP G GD + P + I FTGS
Sbjct: 203 VVLKPASTTPVVAAKFVEVLEDAGLPKGVINYVPGSGAEVGDYLVDHPKTSLITFTGS 260
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 97.4 bits (243), Expect = 5e-25
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 6 AKELTKYQPISEDPKSTLNSLRYRGLDGFVAAVSPFNF-TAI-GGNLAYTPALM-GSSVL 62
L + Q + P LN Y G A ++P+NF AI G + A++ G+ V+
Sbjct: 643 MIRLGQPQRVGHAP-GELNHYFYEPK-GVAAVIAPWNFPLAISMGMAS--AAIVTGNCVV 698
Query: 63 WKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
+KPS + + + ++ EAG+P GV NF P G V GD + P ++ I FTGS
Sbjct: 699 FKPSGITSIIGWHLVELFREAGLPEGVFNFTPGRGSVMGDYLVDHPDISLIAFTGS 754
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 89.9 bits (224), Expect = 2e-22
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 4 FFAKELTKYQ---PISEDPKSTLNSLRYRGLDGFVAAVSPFNF-TAI-GGNLAYTPALM- 57
++A+ +Y+ N Y L G ++P+NF AI G + +
Sbjct: 144 YYARAALRYRYPAVEVVPYPGEDNESFYVPL-GAGVVIAPWNFPVAIFTGMIV--GPVAV 200
Query: 58 GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTG 117
G++V+ KP++ A++ +++I EAG PPGVVNF+P G G + P + INFTG
Sbjct: 201 GNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNFLPGVGEEVGAYLVEHPRIRFINFTG 260
Query: 118 SV 119
S+
Sbjct: 261 SL 262
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 89.8 bits (223), Expect = 2e-22
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 3 AFFAKELTKYQPISEDPKSTLNSLRYRGLDGFVAAVSPFNF-TAIGGNLAYTPALMGSSV 61
A ++L + P N+L RG G A+SP+NF AI + G+SV
Sbjct: 622 AAQGRKLFGSETAMPGPTGESNALTMRGR-GVFVAISPWNFPLAIFLGQVTAALMAGNSV 680
Query: 62 LWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
+ KP++ ++ EAG+P + V DG + G +TA P +AG+ FTGS
Sbjct: 681 VAKPAEQTPRIAREAVALLHEAGIPKSALYLVTGDGRI-GAALTAHPDIAGVVFTGS 736
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 77.6 bits (192), Expect = 4e-18
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPS-DTALLSNYTIYKIMIEAGVPPGVV 90
G V +SP+NF + PAL +G++V+ KP+ DT + +I EAGVP GV+
Sbjct: 150 GVVGVISPWNFPLNLSIRSVAPALAVGNAVVIKPASDTPVTGGVIPARIFEEAGVPAGVI 209
Query: 91 NFVPADGPVFGDTITASPYLAGINFTGS 118
+ V G GD I+FTGS
Sbjct: 210 STVAGAGSEIGDHFVTHAVPKLISFTGS 237
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 77.2 bits (191), Expect = 4e-18
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 33 GFVAAVSPFNFTA--IGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 89
G V A+SPFN+ G +A PAL+ G+ + +KP +S + + EAG+P GV
Sbjct: 145 GLVLAISPFNYPVNLAGSKIA--PALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGV 202
Query: 90 VNFVPADGPVFGDTITASPYLAGINFTGSVP 120
N + G GD I + INFTGS
Sbjct: 203 FNTITGRGSEIGDYIVEHQAVNFINFTGSTG 233
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 77.2 bits (191), Expect = 4e-18
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 33 GFVAAVSPFNFTAIGGNLAYT----PALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPP 87
G V A+SPFN+ NLA PAL+ G++V++KP+ LS + + + +AG P
Sbjct: 154 GVVLAISPFNYPV---NLA-AAKIAPALVTGNTVVFKPATQGSLSGIKMVEALADAGAPE 209
Query: 88 GVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
G++ V G V GD + P + I FTG
Sbjct: 210 GIIQVVTGRGSVIGDHLVEHPGIDMITFTGGTT 242
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 76.1 bits (188), Expect = 1e-17
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPAL-MGSSVLWKPS-DTALLSNYTIYKIMIEAGVPPGVV 90
G ++++SPFNF + PA+ +G+SV+ KP TA+ I K AG+P GV+
Sbjct: 145 GVISSISPFNFPMNLSMRSIAPAIALGNSVVHKPDIQTAISGGTIIAKAFEHAGLPAGVL 204
Query: 91 NFVPADGPVFGDTITASPYLAGINFTGS 118
N + D GD + +P I+FTGS
Sbjct: 205 NVMLTDVKEIGDGMLTNPIPRLISFTGS 232
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 71.1 bits (175), Expect = 7e-16
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 33 GFVAAVSPFNFTAIGGNLA---YTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPG 88
G VAA++PFN+ A T + + G++V+ KPS + L K +++AG PP
Sbjct: 159 GVVAAITPFNYPL---FDAVNKITYSFIYGNAVVVKPSISDPLPAAMAVKALLDAGFPPD 215
Query: 89 VVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
+ + G + I A +A ++FTGS
Sbjct: 216 AIALLNLPGKE-AEKIVADDRVAAVSFTGSTE 246
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 70.3 bits (173), Expect = 1e-15
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 33 GFVAAVSPFNFTA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 89
G VA P+NF G++ PAL G+ V++KPS+ K I+AG+P GV
Sbjct: 141 GVVAVFGPYNFPGHLPNGHIV--PALLAGNCVVFKPSELTPKVAELTLKAWIQAGLPAGV 198
Query: 90 VNFVPADGPVFGDTITASPYLAGINFTGSVP 120
+N V G + A L G+ FTGS
Sbjct: 199 LNLVQGGRET-GVALAAHRGLDGLFFTGSSR 228
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 69.5 bits (171), Expect = 2e-15
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 33 GFVAAVSPFNF--TAIGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 89
G ++P+NF LA A GS V+ KPS+ + + +I + GVP GV
Sbjct: 141 GVSGLITPWNFPTNQTSLKLA--AAFAAGSPVVLKPSEETPFAAVILAEIFDKVGVPKGV 198
Query: 90 VNFVPADGPVFGDTITASPYLAGINFTGS 118
N V DG G+ ++ P + ++FTGS
Sbjct: 199 FNLVNGDGAGVGNPLSEHPKVRMMSFTGS 227
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 69.1 bits (170), Expect = 4e-15
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 17/99 (17%)
Query: 33 GFVAAVSPFNFTA------IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEA-- 83
G V A++PFNF I PA+ G+ ++ PS A L + KI+ A
Sbjct: 132 GIVGAITPFNFPLNLSAHKIA------PAIATGNVIVHHPSSKAPLVCIELAKIIENALK 185
Query: 84 --GVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
VP GV N + G V GD I + + I+FTGS
Sbjct: 186 KYNVPLGVYNLLTGAGEVVGDEIVVNEKVNMISFTGSSK 224
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 68.7 bits (169), Expect = 4e-15
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Query: 4 FFAKELTKYQPISEDPKSTLNSLRYRGLDGFVAAVSPFNF--TAIGGNLAYTPAL-MGSS 60
F K ++ + ++ + G V ++P+N+ + + PAL G +
Sbjct: 134 NFIKAYKEFSFQEALIEGNEQAILHYDAIGVVGLITPWNWPMNQVTLKVI--PALLAGCT 191
Query: 61 VLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
++ KPS+ A LS +I+ EA +P GV N + DG G ++A P L I+FTGS
Sbjct: 192 MVLKPSEIAPLSAMLFAEILDEAALPSGVFNLINGDGANVGSYLSAHPDLEMISFTGS 249
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 66.4 bits (163), Expect = 3e-14
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 33 GFVAAVSPFNFTA--IGGNLAYTPALM-GSSVLWKPSD----TALLSNYTIYKIMIEAGV 85
G V ++ FNF G N A A++ G+ LWK + ++ I K++ + +
Sbjct: 159 GLVGIITAFNFPVAVYGWNNA--IAMICGNVCLWKGAPTTSLISVAVTKIIAKVLEDNKL 216
Query: 86 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
P + + + G + + ++FTGS
Sbjct: 217 PGAICSLTCGGADI-GTAMAKDERVNLLSFTGSTQ 250
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 66.4 bits (163), Expect = 3e-14
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 33 GFVAAVSPFNFTA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 89
G + P+NF I +A PAL G++++ KPS+ + KI+ E G+P GV
Sbjct: 144 GVTTGILPWNFPFFLIARKMA--PALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGV 201
Query: 90 VNFVPADGPVFGDTITASPYLAGINFTGSVP 120
N V G G + +P +A ++ TGSV
Sbjct: 202 FNLVLGRGETVGQELAGNPKVAMVSMTGSVS 232
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 64.5 bits (158), Expect = 1e-13
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 33 GFVAAVSPFNFTA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 89
G V ++ +NF G + PAL G++++ KP+ L+ + +I EAG+P GV
Sbjct: 150 GVVVGITAWNFPLALAGRKIG--PALITGNTMVLKPTQETPLATTELGRIAKEAGLPDGV 207
Query: 90 VNFVPADGPVFGDTITASPYLAGINFTGS 118
+N + G V G T+ SP I TGS
Sbjct: 208 LNVINGTGSVVGQTLCESPITKMITMTGS 236
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 64.1 bits (157), Expect = 2e-13
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 33 GFVAAVSPFNFTA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 89
G + P+NF I L+ AL G + KP+ L+ + +M + +P G+
Sbjct: 149 GVTGLIVPWNFPIGMIAKKLS--AALAAGCPSVIKPASETPLTMIAFFSVMDKLDLPDGM 206
Query: 90 VNFVPADGPVFGDTITASPYLAGINFTGS 118
VN V V G + + ++FTGS
Sbjct: 207 VNLVMGKASVIGKVLCEHKDVPMLSFTGS 235
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 63.5 bits (155), Expect = 3e-13
Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 22/136 (16%)
Query: 4 FFAKELTKY----------QPISEDPKSTLNSLRYRGLDGFVAAVSPFNF----TAIGGN 49
FA + P + L G VA NF +A GG+
Sbjct: 100 LFADVVNSGSYHQAILDTPNPTRAPLPKPDIRRQQIAL-GPVAVFGASNFPLAFSAAGGD 158
Query: 50 LAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEA----GVPPGVVNFVPADGPVFGDTI 104
A AL G V+ K ++ + + + +A +P + + + G +
Sbjct: 159 TA--SALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQLPQAIFTLLQGNQRALGQAL 216
Query: 105 TASPYLAGINFTGSVP 120
+ P + + FTGSV
Sbjct: 217 VSHPEIKAVGFTGSVG 232
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 63.4 bits (155), Expect = 3e-13
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 33 GFVAAVSPFNFTA------IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGV 85
G AA++P+NF A PAL G +++ +P+D L+ + + +AG+
Sbjct: 170 GVTAAITPWNFPAAMITRKAA------PALAAGCTMIVRPADLTPLTALALGVLAEKAGI 223
Query: 86 PPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
P GV+ V G +T++ + ++FTGS
Sbjct: 224 PAGVLQIVTGKAREIGAELTSNDTVRKLSFTGS 256
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 62.9 bits (154), Expect = 5e-13
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 33 GFVAAVSPFNFTA------IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGV 85
G AA++P+NF A G PAL G +++ KP+ S + ++ I AGV
Sbjct: 147 GVTAAITPWNFPAAMITRKAG------PALAAGCTMVLKPASQTPFSALALAELAIRAGV 200
Query: 86 PPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
P GV N V G+ +T++P + ++FTGS
Sbjct: 201 PAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGS 233
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 62.9 bits (154), Expect = 5e-13
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 33 GFVAAVSPFNFTA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 89
G AA++P+NF A I + PAL G ++ KP+++ S + + AGVP GV
Sbjct: 150 GVCAAITPWNFPAAMIARKVG--PALAAGCPIVVKPAESTPFSALAMAFLAERAGVPKGV 207
Query: 90 VNFVPADGPVFGDTITASPYLAGINFTGS 118
++ V D G IT++P + ++FTGS
Sbjct: 208 LSVVIGDPKAIGTEITSNPIVRKLSFTGS 236
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 63.0 bits (154), Expect = 5e-13
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 33 GFVAAVSPFNF----TA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGV 85
G V ++P+NF + + A+ G +V+ KPS+ ++ + ++ EAG+
Sbjct: 163 GVVGIITPWNFPFIIASERVP------WAIGSGCTVVLKPSEFTSGTSIRLAELAREAGI 216
Query: 86 PPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
P GV N V G G + P + + FTGS
Sbjct: 217 PDGVFNVVTGYGDPAGQVLAEDPNVDMVAFTGS 249
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 62.5 bits (153), Expect = 7e-13
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 4 FFAKELTKYQPISEDPKSTLNSLRYRGLDGFVAAVSPFNF--TAIGGNLAYTPAL-MGSS 60
+FA K S S+ R G V A+ +N +A PAL G +
Sbjct: 119 YFAGAADKVTWTETRTGSYGQSIVSREPVGVVGAIVAWNVPLFLAVNKIA--PALLAGCT 176
Query: 61 VLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
++ KP+ L+ + ++ E G+P GV++ VP G G +T++P + FTGS
Sbjct: 177 IVLKPAAETPLTANALAEVFAEVGLPEGVLSVVPG-GIETGQALTSNPDIDMFTFTGS 233
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 62.5 bits (153), Expect = 7e-13
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 54 PAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAG 112
PAL G+++++KPS+ L+ + +I EAGVP GV N + G G +T P +
Sbjct: 165 PALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHPLIEK 224
Query: 113 INFTGSVP 120
I+FTG
Sbjct: 225 ISFTGGTS 232
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 61.8 bits (151), Expect = 1e-12
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 33 GFVAAVSPFNF----TA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGV 85
G V P+N+ + L G++V+ KP+ L+ ++ ++AG+
Sbjct: 180 GVCGIVIPWNYPLMMLSWKTA------ACLAAGNTVVIKPAQVTPLTALKFAELTLKAGI 233
Query: 86 PPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
P GVVN +P G + G ++ P + I FTGS
Sbjct: 234 PKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGS 266
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 61.0 bits (149), Expect = 2e-12
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 33 GFVAAVSPFNF----TA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGV 85
G + P+NF A +G PAL G+ V+ K ++ L+ + ++ EAG
Sbjct: 160 GVCGQIIPWNFPLLMQAWKLG------PALATGNVVVMKVAEQTPLTALYVANLIKEAGF 213
Query: 86 PPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
PPGVVN VP GP G I + + + FTGS
Sbjct: 214 PPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGS 246
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 61.0 bits (149), Expect = 3e-12
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 33 GFVAAVSPFNF----TA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGV 85
G + P+NF IG PAL G++V+ KP++ L+ + ++ EAG
Sbjct: 161 GVCGQIIPWNFPLLMFLWKIG------PALSCGNTVVVKPAEQTPLTALHMGSLIKEAGF 214
Query: 86 PPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
PPGVVN VP GP G I++ + + FTGS
Sbjct: 215 PPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGS 247
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 60.5 bits (147), Expect = 3e-12
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 33 GFVAAVSPFNF----TAIGGNLAYTPAL-MGSSVLWKPSD----TALLSNYTIYKIMIEA 83
G VA NF + GG+ A AL G V+ K T + + + +
Sbjct: 171 GPVAVFGASNFPLAFSTAGGDTA--AALAAGCPVVVKGHSAHPGTGEIVAEAVDAAIRKT 228
Query: 84 GVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
GV PGV + + G + P++ + FTGS+
Sbjct: 229 GVHPGVFSLIQGGSRDVGHALVQHPHIKAVGFTGSLA 265
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 60.6 bits (148), Expect = 4e-12
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 54 PAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAG 112
PAL G + + KPS+ A L+ + +I E G+PPGV+N + GP G + P +
Sbjct: 174 PALAAGCAAILKPSELASLTCLELGEICKEVGLPPGVLNILTGLGPEAGAPLATHPDVDK 233
Query: 113 INFTGSVP 120
+ FTGS
Sbjct: 234 VAFTGSSA 241
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 60.3 bits (147), Expect = 4e-12
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 33 GFVAAVSPFNF----TA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGV 85
G V ++P+N + I PAL G++V+ KP++ + + + +I+ EA +
Sbjct: 164 GPVGIITPWNAPLMLSTWRIA------PALAFGNTVVLKPAEWSPFTATKLAEILKEADL 217
Query: 86 PPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
PPGV N V G G + A P + + TG
Sbjct: 218 PPGVFNLVQGFGEEAGAALVAHPLVPLLTLTGE 250
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 60.3 bits (147), Expect = 5e-12
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 54 PAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAG 112
PAL G+++++KPS+ L I +I+IEAG+P G+ N + D G + P +A
Sbjct: 173 PALVAGNAMVFKPSENTPLGALKIAEILIEAGLPKGLFNVIQGDRDT-GPLLVNHPDVAK 231
Query: 113 INFTGSVP 120
++ TGSVP
Sbjct: 232 VSLTGSVP 239
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 59.3 bits (144), Expect = 1e-11
Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 13/124 (10%)
Query: 3 AFFAKELTKYQPISEDPKSTLNSLRYRGLDGFVAAVSPFNF---TAIGGNLAYTPALM-G 58
+ K++ + ED + + + G VA + P T I ++ G
Sbjct: 82 YNYIKDMKTIGMLKEDNEKKV--MEVAVPLGVVAGLIPSTNPTSTVIY-KTL--ISIKAG 136
Query: 59 SSVLWKPSDTALLSNYTIYKIMIE----AGVPPGVVNFVPADGPVFGDTITASPYLAGIN 114
+S+++ P AL + +I+ E AG P G ++ + D + A I
Sbjct: 137 NSIVFSPHPNALKAILETVRIISEAAEKAGCPKGAISCMTVPTIQGTDQLMKHKDTAVIL 196
Query: 115 FTGS 118
TG
Sbjct: 197 ATGG 200
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 58.7 bits (143), Expect = 1e-11
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 54 PAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAG 112
PAL G S++ KPS+ L+ ++++M E G P G +N + G GD ++ +
Sbjct: 193 PALATGCSLVMKPSEITPLTTIRVFELMEEVGFPKGTINLILGAGSEVGDVMSGHKEVDL 252
Query: 113 INFTGSVP 120
++FTG +
Sbjct: 253 VSFTGGIE 260
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 58.5 bits (142), Expect = 2e-11
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGV-PPGVV 90
G ++ FNF + G PAL+ G V+ KP+ + +++AG+ PPG +
Sbjct: 153 GVALFINAFNFPSWGLWEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGILPPGAL 212
Query: 91 NFVPADGPVFGDTITASPYLAGINFTGSV 119
+ + + ++FTGS
Sbjct: 213 SIICGSS---AGLLDQIRSFDVVSFTGSA 238
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 57.9 bits (141), Expect = 3e-11
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 33 GFVAAVSPFNFTA--IGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGV 89
G A ++P+NF + I + AL G +V+ KP++ S + ++ +AG+P GV
Sbjct: 148 GVAAVITPWNFPSAMITRKVG--AALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGV 205
Query: 90 VNFVPA---DGPVFGDTITASPYLAGINFTGS 118
N +P + G+ I P ++ I+FTGS
Sbjct: 206 YNVIPCSRKNAKEVGEAICTDPLVSKISFTGS 237
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 57.2 bits (139), Expect = 5e-11
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 54 PAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAG 112
PAL G++V++KPS ++ + +I EAGVP G+VN V G G + P +A
Sbjct: 178 PALACGNAVVFKPSPMTPVTGVILAEIFHEAGVPVGLVNVVQG-GAETGSLLCHHPNVAK 236
Query: 113 INFTGSVP 120
++FTGSVP
Sbjct: 237 VSFTGSVP 244
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 55.6 bits (135), Expect = 2e-10
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 22/99 (22%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-----------GSSVLWKPSDTALLSNYTIYKIMI 81
G VA+++P+N+ P +M G+ V+ KPS+ L+ + ++
Sbjct: 161 GVVASIAPWNY----------PLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAK 210
Query: 82 EAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
+ P GVVN + G GD +T P + ++ TGS+
Sbjct: 211 DI-FPAGVVNILFGRGKTVGDPLTGHPKVRMVSLTGSIA 248
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 55.6 bits (135), Expect = 2e-10
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 14/94 (14%)
Query: 33 GFVAAVSPFNF----TA--IGGNLAYTPAL-MGSSVLWKPSDTALLSNYTIYKIMIEAGV 85
G V +++P+N+ A + PA+ G++V++KPS+ L+ + +++ + +
Sbjct: 163 GIVGSIAPWNYPLMMMAWKLA------PAIGGGNTVVFKPSEQTPLTALKLARLIADI-L 215
Query: 86 PPGVVNFVPADGPVFGDTITASPYLAGINFTGSV 119
P GVVN + G G+ + P + ++ TG +
Sbjct: 216 PEGVVNVITGRGETVGNALINHPKVGMVSITGDI 249
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 54.2 bits (131), Expect = 6e-10
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 13/112 (11%)
Query: 15 ISEDPKSTLNSLRYRGLDGFVAAVSPFNF---TAIGGNLAYTPALM-GSSVLWKPSDTAL 70
+ ED + G + + P TAI +L + +++ P A
Sbjct: 89 LEEDDNLGT--MTIAEPVGIICGIVPTTNPTSTAIF-KSL--ISLKTRNGIIFSPHPRAK 143
Query: 71 LSNYTIYKIMIEA----GVPPGVVNFVPADGPVFGDTITASPYLAGINFTGS 118
S K++++A G P ++ ++ + + +A I TG
Sbjct: 144 NSTNDAAKLVLDAAVAAGAPKDIIGWIDQPSVELSNALMKHDDIALILATGG 195
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 53.3 bits (129), Expect = 1e-09
Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 15/121 (12%)
Query: 6 AKELTKYQPISEDPKSTLNSLRYRGLDGFVAAVSPFNF-----TAIGGNLAYTPALM-GS 59
E+ K ++ D + + G + A P+NF + P + G+
Sbjct: 101 GPEMLKPTKLNSDLGNAY--YLKQST-GVIMACEPWNFPLYQVIRVFA-----PNFIVGN 152
Query: 60 SVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSV 119
+L K + S KI+ AG P G + + D I A P + G+ TGS
Sbjct: 153 PILLKHAHNVPGSAALTAKIIKRAGAPEGSLINLYPSYDQLAD-IIADPRIQGVALTGSE 211
Query: 120 P 120
Sbjct: 212 R 212
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 52.6 bits (127), Expect = 2e-09
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G V ++PFNF + + A+ G++ + KPS+ L + ++ +AG+P GV N
Sbjct: 143 GVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFN 202
Query: 92 FVPADGPVFGDTITASPYLAGINFTGSVP 120
V V + I P + I+F GS P
Sbjct: 203 VVYGAHDVV-NGILEHPEIKAISFVGSKP 230
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 51.8 bits (125), Expect = 3e-09
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 33 GFVAAVSPFNF-----TAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVP 86
G + A+ P+NF P L+ G+S L K + I +I+ EAG P
Sbjct: 128 GVILAIMPWNFPLWQVLRGAV-----PILLAGNSYLLKHAPNVTGCAQMIARILAEAGTP 182
Query: 87 PGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
GV +V A+ + P +A + TGSV
Sbjct: 183 AGVYGWVNANNEGVSQ-MINDPRIAAVTVTGSVR 215
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 51.9 bits (125), Expect = 4e-09
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVN 91
G A ++PFNF + + PA+ G++ + KPS+ + ++MIEAG+P G++N
Sbjct: 164 GIGAGITPFNFPGMIPMWMFAPAIACGNAFILKPSERDPSVPIRLAELMIEAGLPAGILN 223
Query: 92 FVPADGPVFGDTITASPYLAGINFTGSVP 120
V D D I P +A ++F GS P
Sbjct: 224 VVNGDKGAV-DAILTHPDIAAVSFVGSTP 251
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.025
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 26/84 (30%)
Query: 10 TKYQPISEDPKSTLNSLRYRGLDGFVAAVSPFNFTAIGGNLAYT-PALMGSSVLWKPSDT 68
K + I ++ S +R G + + T +T PAL
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLL------SATQ------FTQPALT----------- 1737
Query: 69 ALLSNYTIYKIMIEAGVPPGVVNF 92
L+ ++ + G+ P F
Sbjct: 1738 -LME-KAAFEDLKSKGLIPADATF 1759
Score = 26.6 bits (58), Expect = 3.1
Identities = 25/142 (17%), Positives = 39/142 (27%), Gaps = 50/142 (35%)
Query: 2 NAFFAKELTKYQPISEDPKSTLNSLRYRGLDGFVAAVSP-FNFTAI-GG---NLAYTPAL 56
N A+ + K +P + S L F A AI GG Y
Sbjct: 125 NYITARIMAK-RPFDKKSNSAL----------FRAVGEGNAQLVAIFGGQGNTDDY---- 169
Query: 57 MGSSVLWKPSDTALLSNYTIYKIMIE------AGVPPGVVNFVPADGPVFGDTI------ 104
++ L Y Y +++ A ++ VF +
Sbjct: 170 ------FE----ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 105 ---TASP---YLAGINFTGSVP 120
+ +P YL I S P
Sbjct: 220 ENPSNTPDKDYLLSIPI--SCP 239
>2wur_A Green fluorescent protein; chromophore, beta-barrel, luminescence,
photoprotein, bioluminescence; HET: CSY IPA EOH; 0.90A
{Aequorea victoria} PDB: 1emk_A* 1eme_A* 1emc_A* 1eml_A*
1s6z_A* 1z1p_A* 1z1q_A* 1q4a_A* 1c4f_A* 1emb_A* 1emg_A*
1ema_A* 1hcj_A* 1q4b_A* 1w7s_A* 1w7t_A* 1w7u_A* 2emd_A*
1emm_A* 2emn_A* ...
Length = 236
Score = 26.5 bits (58), Expect = 2.2
Identities = 5/43 (11%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 66 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASP 108
++ + + +I ++ ++F DG + G + +
Sbjct: 108 AEVKFEGDTLVNRIELKG------IDF-KEDGNILGHKLEYNY 143
>3ai4_A Yeast enhanced green fluorescent protein, DNA POL IOTA; UBM,
ubiquitin-binding motif, GFP, fusion, fluorescent prote
replication; HET: CR2; 1.60A {Aequorea victoria} PDB:
2kwu_A* 2ktf_B* 2l0g_A*
Length = 283
Score = 26.2 bits (57), Expect = 3.0
Identities = 5/43 (11%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 66 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASP 108
++ + + +I ++ ++F DG + G + +
Sbjct: 111 AEVKFEGDTLVNRIELKG------IDF-KEDGNILGHKLEYNY 146
>3p28_A Green fluorescent protein; circular permutation, fluorescence, beta
barrel; HET: CSY; 1.80A {Aequorea victoria}
Length = 239
Score = 26.1 bits (57), Expect = 3.3
Identities = 5/43 (11%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 66 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASP 108
++ + + +I ++ ++F DG + G + +
Sbjct: 60 AEVKFEGDTLVNRIELKG------IDF-KEDGNILGHKLEYNY 95
>2ejo_A Fluorescent protein; GFP-like protein, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: CFY; 1.65A {Fungia concinna} PDB: 2ejp_A*
2zmu_A* 2zmw_A* 3mgf_A*
Length = 223
Score = 25.6 bits (56), Expect = 4.3
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 66 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASP 108
+ +L N +K VNF PADGP+ +
Sbjct: 105 AHISLRGNTFYHKSKFTG------VNF-PADGPIMQNQSVDWE 140
>3ako_A Venus; fluorescent protein, GFP; HET: CR2 PE8; 2.10A {Plant
transformation vector psiteii-4corganism_taxid}
Length = 173
Score = 25.6 bits (56), Expect = 4.4
Identities = 4/19 (21%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 90 VNFVPADGPVFGDTITASP 108
++F DG + G + +
Sbjct: 147 IDF-KEDGNILGHKLEYNY 164
>2a50_B ASFP595, GFP-like non-fluorescent chromoprotein FP595 CHAI; ASCP,
fluorescent protein, photochromic prote reversible
photoswitch; HET: NRQ; 1.30A {Anemonia sulcata} PDB:
2a53_B* 2a54_B* 2a56_B* 2a52_B* 3cfa_A* 3cfh_A* 3cff_A*
Length = 168
Score = 25.2 bits (55), Expect = 4.7
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 66 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPY 109
DT+L + +YK+ I NF PADGPV +
Sbjct: 42 QDTSLDGDCLVYKVKILG------NNF-PADGPVMQNKAGRWEP 78
>2ib5_A Chromo protein, cjblue; beta barrel, alpha helix, chromophore,
luminescent protein; HET: CRQ; 1.80A {Cnidopus
japonicus} PDB: 2ib6_A*
Length = 233
Score = 25.6 bits (56), Expect = 5.1
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 66 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPY 109
+T L N +Y I I NF P +GPV
Sbjct: 107 QETKLDGNCLVYNIKILG------CNF-PPNGPVMQKKTQGWEP 143
>1xmz_A ASCP595, GFP-like chromoprotein FP595; fluorescent protein,
chromophore structure, lumines protein; HET: CRK; 1.38A
{Anemonia sulcata} PDB: 1xqm_A*
Length = 241
Score = 25.2 bits (55), Expect = 6.2
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 66 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPY 109
DT+L + +YK+ I NF PADGPV +
Sbjct: 115 QDTSLDGDCLVYKVKILG------NNF-PADGPVMQNKAGRWEP 151
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis,
nucleotide-BIN lipid synthesis, ATP-grAsp domain,
fragment screening; HET: L22; 1.77A {Escherichia coli}
PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A*
2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A*
2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A*
...
Length = 449
Score = 25.1 bits (56), Expect = 6.9
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 8/31 (25%)
Query: 78 KIMIEAGVP--PGVVNFVPADGPVFGDTITA 106
M +AGVP PG +DGP+ D
Sbjct: 121 AAMKKAGVPCVPG------SDGPLGDDMDKN 145
>3e59_A Pyoverdine biosynthesis protein PVCA; isonitrIle, paerucumarin,
2-isocyano-6,7-dihydroxycoum transferase; HET: PGE;
2.10A {Pseudomonas aeruginosa}
Length = 330
Score = 25.3 bits (55), Expect = 6.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 81 IEAGVPPGVVNFVPADGPVFGDTI 104
I+ PG V +DG VFGD +
Sbjct: 100 IQLFYAPGAKITVCSDGRVFGDLV 123
>3vcf_A Probable integrase; catalyzes site-specific integration,
recombination; 2.70A {Sulfolobus virus 1} PDB: 4dks_A
3uxu_A
Length = 163
Score = 24.9 bits (54), Expect = 7.0
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 77 YKIMIEAGVPPGVVNFV 93
M E VP +++F+
Sbjct: 113 ASKMAELSVPLDIIDFI 129
>2iov_A Fluorescent protein dronpa; reversibly switchable fluorescent
protein, green-fluorescent like protein, luminescent
protein; HET: GYC; 1.80A {Echinophyllia SP} PDB: 2pox_A*
2z6z_A* 2z6x_A*
Length = 255
Score = 24.9 bits (54), Expect = 7.2
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 66 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPY 109
+D L + IY+I + VNF PA+GPV
Sbjct: 136 NDITLDGDCYIYEIRFDG------VNF-PANGPVMQKRTVKWEP 172
>2dd7_A Green fluorescent protein; luminescent protein; HET: CR2 CXS; 1.90A
{Chiridius poppei} PDB: 2dd9_A*
Length = 216
Score = 24.9 bits (54), Expect = 7.2
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 7/43 (16%)
Query: 66 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASP 108
N I + F P+ P+F DTI S
Sbjct: 96 FRYTYEFNKIIGDVECIG------HGF-PSQSPIFKDTIVKSC 131
>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron
transport, redox- active center, yeast, GRX1P,
transport; HET: PIA; 2.7A {Aequorea victoria}
Length = 362
Score = 25.1 bits (54), Expect = 7.3
Identities = 5/43 (11%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 66 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASP 108
++ + + +I ++ ++F DG + G + +
Sbjct: 108 AEVKFEGDTLVNRIELKG------IDF-KEDGNILGHKLEYNY 143
>3cgl_A GFP-like fluorescent chromoprotein DSFP483; beta barrel,
chromophore, luminescence, photoprotein, fluore protein;
HET: CRQ; 2.09A {Discosoma striata}
Length = 241
Score = 24.9 bits (54), Expect = 8.7
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 66 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPY 109
+D +L N Y I +NF P +GPV T
Sbjct: 118 NDISLTGNCFYYDIKFTG------LNF-PPNGPVVQKKTTGWEP 154
>3evp_A Circular-permutated green fluorescent protein; EGFP, chromophore,
luminescence, photoprotein, signaling protein; HET: CRO;
1.45A {Aequorea victoria}
Length = 243
Score = 24.6 bits (53), Expect = 9.9
Identities = 4/16 (25%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 90 VNFVPADGPVFGDTIT 105
++F DG + G +
Sbjct: 227 IDF-KEDGNILGHKLE 241
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.409
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,879,565
Number of extensions: 105712
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 81
Length of query: 120
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,412,271
Effective search space: 167666298
Effective search space used: 167666298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)