RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1844
(120 letters)
>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Sheep (Ovis aries) [TaxId: 9940]}
Length = 494
Score = 88.5 bits (219), Expect = 2e-22
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 4 FFAKELTKYQPISEDPKSTLNSLRYRGLDGFVAAVSPFNFTAIGGNLAYTPAL-MGSSVL 62
+ A K Q + + G + P+NF + PAL G++V+
Sbjct: 125 YCAGWADKIQGRTIPMDGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVV 184
Query: 63 WKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
KP++ L+ + ++ EAG PPGVVN VP GP G I++ + + FTGS
Sbjct: 185 VKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTE 242
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 494
Score = 87.8 bits (217), Expect = 4e-22
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 FFAKELTKYQPISEDPKSTLNSLRYRGLDGFVAAVSPFNFTAIGGNLAYTPALM-GSSVL 62
++A KY + S G + P+NF + PAL G+ V+
Sbjct: 125 YYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVV 184
Query: 63 WKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
K ++ L+ + ++ EAG PPGVVN VP GP G I + + + FTGS
Sbjct: 185 MKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTE 242
>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW
{Escherichia coli [TaxId: 562]}
Length = 474
Score = 72.5 bits (177), Expect = 1e-16
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 24 NSLRYRGLDGFVAAVSPFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIE 82
S+ R G VA+++P+N+ + PAL G+ V+ KPS+ L+ + ++ +
Sbjct: 131 TSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAEL-AK 189
Query: 83 AGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
P GVVN + G GD +T P + ++ TGS+
Sbjct: 190 DIFPAGVVNILFGRGKTVGDPLTGHPKVRMVSLTGSIA 227
>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Baltic cod (Gadus callarias) [TaxId: 8053]}
Length = 503
Score = 71.3 bits (174), Expect = 2e-16
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 40 PFNFTAIGGNLAYTPALM-GSSVLWKPSDTALLSNYTIYKIMIEAGVPPGVVNFVPADGP 98
+N+ + PAL G++V++KPS ++ + +I EAGVP G+VN V
Sbjct: 164 AWNYPFMIAAWKCAPALACGNAVVFKPSPMTPVTGVILAEIFHEAGVPVGLVNVVQGGAE 223
Query: 99 VFGDTITASPYLAGINFTGSVP 120
G + P +A ++FTGSVP
Sbjct: 224 T-GSLLCHHPNVAKVSFTGSVP 244
>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Streptococcus mutans [TaxId: 1309]}
Length = 474
Score = 54.9 bits (131), Expect = 1e-10
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 33 GFVAAVSPFNFTAIGGNLAYTPALMGSSVLWKPSDTAL-LSNYTIYKIMIEAGVPPGVVN 91
G V A+SPFN+ PAL+ +V+ T +S + + EAG+P GV N
Sbjct: 144 GLVLAISPFNYPVNLAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFN 203
Query: 92 FVPADGPVFGDTITASPYLAGINFTGS 118
+ G GD I + INFTGS
Sbjct: 204 TITGRGSEIGDYIVEHQAVNFINFTGS 230
>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 516
Score = 45.3 bits (106), Expect = 3e-07
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 71 LSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASPYLAGINFTGSVP 120
+ +++I EAG PPGVVNF+P G G + P + INFTGS+
Sbjct: 214 VVGAKVFEIFHEAGFPPGVVNFLPGVGEEVGAYLVEHPRIRFINFTGSLE 263
>d1oxda_ d.22.1.1 (A:) Green fluorescent protein, GFP {Jellyfish
(Aequorea victoria) [TaxId: 6100]}
Length = 227
Score = 25.9 bits (57), Expect = 1.3
Identities = 5/43 (11%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 66 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASP 108
++ + + +I ++ ++F DG + G + +
Sbjct: 108 AEVKFEGDTLVNRIELKG------IDF-KEDGNILGHKLEYNY 143
>d1gjja2 a.140.1.1 (A:111-153) Thymopoietin, LAP2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 43
Score = 23.8 bits (52), Expect = 1.6
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 67 DTALLSNYTIYKIMIEAGVPPGVV 90
D L+N + +++ GV PG +
Sbjct: 1 DVTELTNEDLLDQLVKYGVNPGPI 24
>d1wl7a1 b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus
thermodenitrificans [TaxId: 33940]}
Length = 312
Score = 25.3 bits (54), Expect = 2.0
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 86 PPGVVNFVPADGPVFGDTITASPYL 110
P G VNF D + GD P +
Sbjct: 5 PFGNVNFYEMDWSLKGDLWAHDPVI 29
>d2rh7a1 d.22.1.1 (A:7-226) Green fluorescent protein, GFP {Renilla
reniformis [TaxId: 6136]}
Length = 220
Score = 25.1 bits (55), Expect = 2.3
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 7/42 (16%)
Query: 66 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITAS 107
SD +L I + +A + GPV I
Sbjct: 103 SDISLEDGKFIVNVDFKA------KDL-RRMGPVMQQDIVGM 137
>d1xqma_ d.22.1.1 (A:) GFP-like non-fluorescent chromoprotein FP595
{Anemonia sulcata [TaxId: 6108]}
Length = 230
Score = 24.7 bits (54), Expect = 2.8
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 66 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITASP 108
DT+L + +YK+ I NF PADGPV + +
Sbjct: 104 QDTSLDGDCLVYKVKILG------NNF-PADGPVMQNKVGRWE 139
>d1moua_ d.22.1.1 (A:) Pocilloporin pigment Rtms5 {Coral (Montipora
efflorescens) [TaxId: 105610]}
Length = 221
Score = 24.7 bits (54), Expect = 3.7
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 66 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITAS 107
+D+++ N Y + +NF P +GPV
Sbjct: 105 NDSSIQGNCFTYHVKFSG------LNF-PPNGPVMQKKTQGW 139
>d1uisa_ d.22.1.1 (A:) Red fluorescent protein fp61 {Sea anemone
(Entacmaea quadricolor) [TaxId: 6118]}
Length = 227
Score = 24.3 bits (53), Expect = 3.8
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
Query: 66 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTITAS 107
DT+L +Y + VNF P++G V
Sbjct: 108 QDTSLEDGCLVYHAKVTG------VNF-PSNGAVMQKKTKGW 142
>d1ggxa_ d.22.1.1 (A:) Red fluorescent protein (fp583 or
dsred(clontech)) {Coral (Discosoma sp.) [TaxId: 86600]}
Length = 219
Score = 24.3 bits (53), Expect = 4.0
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 66 SDTALLSNYTIYKIMIEAGVPPGVVNFVPADGPVFGDTIT 105
D++L IYK+ VNF P+DGPV
Sbjct: 103 QDSSLQDGCFIYKVKFIG------VNF-PSDGPVMQKKTM 135
>d1xs1a_ b.85.4.1 (A:) Deoxycytidine triphosphate deaminase (dCTP
deaminase) {Escherichia coli [TaxId: 562]}
Length = 193
Score = 23.2 bits (49), Expect = 9.9
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 68 TALLSNYTIYKIMIEAGVPPGVVNFVPADGPV 99
N + + G+ G ++F P GP
Sbjct: 136 VLEFYNSGKLPLALRPGMLIGALSFEPLSGPA 167
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.409
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 446,273
Number of extensions: 18752
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 15
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)