Query psy1847
Match_columns 86
No_of_seqs 131 out of 1018
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 17:50:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z8h_A Transcription regulator 99.7 1.1E-16 3.9E-21 101.7 6.9 73 2-74 61-138 (138)
2 3ohu_A Transcription regulator 99.7 1.5E-16 5.2E-21 99.3 6.5 66 2-67 57-123 (125)
3 2vkp_A BTB/POZ domain-containi 99.6 2.2E-16 7.4E-21 96.1 5.7 65 2-67 37-103 (109)
4 2if5_A Zinc finger and BTB dom 99.6 1.6E-16 5.5E-21 98.4 5.0 66 2-67 50-117 (120)
5 3b84_A Zinc finger and BTB dom 99.6 2.8E-16 9.7E-21 97.7 5.3 66 2-69 49-114 (119)
6 2yy9_A Zinc finger and BTB dom 99.6 2.2E-16 7.6E-21 100.3 4.8 66 2-69 50-115 (135)
7 2ihc_A Transcription regulator 99.6 5.5E-16 1.9E-20 97.0 6.0 68 2-69 54-122 (124)
8 2vpk_A Myoneurin; transcriptio 99.6 5.8E-16 2E-20 95.5 5.7 64 2-67 47-112 (116)
9 1r29_A B-cell lymphoma 6 prote 99.6 6.5E-16 2.2E-20 96.6 5.9 66 2-67 54-121 (127)
10 2ppi_A Gigaxonin; BTB domain, 99.6 4.9E-16 1.7E-20 99.8 5.2 67 2-68 72-142 (144)
11 3ga1_A Nucleus accumbens-assoc 99.6 5.6E-16 1.9E-20 97.4 4.7 66 2-69 58-124 (129)
12 1buo_A POZ domain, protein (pr 99.6 1.1E-15 3.7E-20 95.2 5.5 63 2-67 53-115 (121)
13 2q81_A MIZ-1 protein; BTB/POZ 99.6 6E-16 2.1E-20 96.2 2.5 65 2-69 52-116 (119)
14 3hve_A Gigaxonin; ubiquitin, c 99.6 4.2E-15 1.4E-19 102.2 6.0 73 2-74 56-136 (256)
15 3i3n_A Kelch-like protein 11; 99.5 7.8E-15 2.7E-19 102.1 6.6 74 1-74 59-144 (279)
16 3htm_A Speckle-type POZ protei 99.5 4.7E-15 1.6E-19 96.0 4.8 73 2-74 59-137 (172)
17 3m5b_A Zinc finger and BTB dom 99.5 4.4E-15 1.5E-19 92.9 4.2 57 13-69 59-115 (119)
18 4eoz_A Speckle-type POZ protei 99.5 1.8E-15 6.2E-20 95.7 1.6 74 2-75 50-129 (145)
19 3fkc_A Transcriptional regulat 99.5 1.5E-14 5.1E-19 89.8 4.2 59 2-63 56-115 (116)
20 3hqi_A Speckle-type POZ protei 99.4 1.4E-13 4.9E-18 96.7 4.9 74 2-75 199-278 (312)
21 2ast_A S-phase kinase-associat 99.3 7E-13 2.4E-17 86.7 3.4 66 2-67 25-120 (159)
22 4ajy_C Transcription elongatio 99.1 1.9E-10 6.5E-15 69.6 5.0 57 2-58 26-97 (97)
23 1fs1_B SKP1, cyclin A/CDK2-ass 99.0 1.1E-10 3.8E-15 75.0 2.2 65 2-68 26-116 (141)
24 2p1m_A SKP1-like protein 1A; F 99.0 1.9E-10 6.4E-15 75.3 2.2 66 2-68 28-120 (160)
25 3v7d_A Suppressor of kinetocho 98.3 5.5E-07 1.9E-11 59.3 3.3 67 2-68 31-128 (169)
26 2fnj_C Transcription elongatio 98.2 1.5E-06 5.2E-11 52.3 4.2 57 2-58 25-96 (96)
27 1hv2_A Elongin C, ELC1; protei 98.0 3.8E-06 1.3E-10 50.9 3.6 57 2-58 28-99 (99)
28 3drz_A BTB/POZ domain-containi 97.9 2.5E-05 8.6E-10 47.7 5.5 66 2-68 31-103 (107)
29 1vcb_B Protein (elongin C); tu 97.7 3.2E-05 1.1E-09 47.8 3.5 57 2-58 41-112 (112)
30 3drx_A BTB/POZ domain-containi 96.6 0.0024 8.2E-08 43.3 4.5 67 2-69 37-110 (202)
31 1s1g_A Potassium voltage-gated 95.9 0.0089 3E-07 37.3 4.0 52 14-66 52-105 (124)
32 2nz0_B Potassium voltage-gated 95.5 0.014 4.8E-07 37.2 3.6 52 14-66 74-127 (140)
33 1nn7_A Potassium channel KV4.2 95.3 0.0077 2.6E-07 36.5 1.8 51 15-66 40-92 (105)
34 3kvt_A Potassium channel prote 94.4 0.027 9.4E-07 34.6 2.8 52 14-66 45-98 (115)
35 1t1d_A Protein (potassium chan 93.4 0.12 4.1E-06 30.9 4.2 52 13-65 40-94 (100)
36 2r9r_B Paddle chimera voltage 76.8 5.3 0.00018 29.8 5.6 49 13-62 91-141 (514)
37 2rbg_A Putative uncharacterize 66.8 0.59 2E-05 29.1 -1.4 67 2-68 20-97 (126)
38 2eqx_A Kelch repeat and BTB do 66.7 3.9 0.00013 23.8 2.3 31 36-66 3-33 (105)
39 1pd7_B MAD1; PAH2, SIN3, eukar 58.3 4.3 0.00015 18.5 1.1 14 44-57 3-16 (26)
40 1uxc_A FRUR (1-57), fructose r 56.4 8.3 0.00028 20.8 2.3 36 20-59 10-48 (65)
41 4h63_H Mediator of RNA polymer 53.6 6.7 0.00023 26.1 1.9 14 25-38 186-199 (200)
42 3htm_A Speckle-type POZ protei 48.4 13 0.00044 22.7 2.5 27 40-66 131-157 (172)
43 3hqi_A Speckle-type POZ protei 40.6 18 0.00062 24.4 2.5 28 40-67 271-298 (312)
44 2l8n_A Transcriptional repress 33.9 17 0.00058 19.6 1.2 36 20-59 19-54 (67)
45 1taf_A TFIID TBP associated fa 31.1 27 0.00091 19.2 1.8 17 20-36 17-33 (68)
46 1k8k_G P16, ARP2/3 complex 16 25.6 27 0.00093 22.3 1.3 26 19-44 95-120 (151)
47 2hzs_I RNA polymerase II media 24.2 36 0.0012 15.1 1.2 13 27-39 9-21 (27)
48 4gwp_C Mediator of RNA polymer 22.9 30 0.001 25.5 1.2 19 23-41 194-212 (407)
49 2aze_C Retinoblastoma-associat 22.7 32 0.0011 17.5 0.9 28 52-79 13-45 (46)
50 3dwl_G Actin-related protein 2 22.1 26 0.0009 22.4 0.7 48 19-66 96-147 (152)
51 3p04_A Uncharacterized BCR; SE 22.0 84 0.0029 18.0 2.8 21 16-36 32-52 (87)
52 1qpz_A PURA, protein (purine n 20.2 57 0.002 21.8 2.1 35 20-58 10-44 (340)
No 1
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.67 E-value=1.1e-16 Score=101.73 Aligned_cols=73 Identities=11% Similarity=0.225 Sum_probs=64.9
Q ss_pred chhhhcCCCCCCCCeEEec-CCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhh----hcCCCCCCC
Q psy1847 2 EDESLFTEHFDKHPIIILK-DIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNV----KAETPLENA 74 (86)
Q Consensus 2 YFr~mF~~~e~~~~~V~L~-~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c----~~~~~~~~~ 74 (86)
|||+||.+.......|.++ ++++++++.+|+|+|||++.++.+++.+++.+|++|+++.|++.| .+.++.+||
T Consensus 61 yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sna 138 (138)
T 2z8h_A 61 YFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDSTS 138 (138)
T ss_dssp HHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCCC
T ss_pred HHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccC
Confidence 9999999865556789995 899999999999999999999999999999999999999999999 455555554
No 2
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.66 E-value=1.5e-16 Score=99.27 Aligned_cols=66 Identities=8% Similarity=0.241 Sum_probs=62.4
Q ss_pred chhhhcCCCCCCCCeEEecC-CCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847 2 EDESLFTEHFDKHPIIILKD-IKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKA 67 (86)
Q Consensus 2 YFr~mF~~~e~~~~~V~L~~-vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~ 67 (86)
|||+||.+.......|.+++ +++++|+.+|+|+|||++.++.+++.+++.+|++|+++++++.|.+
T Consensus 57 yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~L~~~C~~ 123 (125)
T 3ohu_A 57 YFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFS 123 (125)
T ss_dssp HHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBSSCTTSSCC
T ss_pred HHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCceEECHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 89999998655578899998 9999999999999999999999999999999999999999999975
No 3
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=96.14 Aligned_cols=65 Identities=20% Similarity=0.264 Sum_probs=58.9
Q ss_pred chhhhcCC--CCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847 2 EDESLFTE--HFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKA 67 (86)
Q Consensus 2 YFr~mF~~--~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~ 67 (86)
||++||.+ .++. ..|.|+++++++++.+|+|+|||++.++.+++.+++.+|++|+++.+++.|..
T Consensus 37 ~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~ 103 (109)
T 2vkp_A 37 VFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVN 103 (109)
T ss_dssp HHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTTTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 89999998 4555 89999999999999999999999999999999999999999999999999964
No 4
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.64 E-value=1.6e-16 Score=98.43 Aligned_cols=66 Identities=17% Similarity=0.325 Sum_probs=60.7
Q ss_pred chhhhcCC--CCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847 2 EDESLFTE--HFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKA 67 (86)
Q Consensus 2 YFr~mF~~--~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~ 67 (86)
||++||.+ .++....|.|+++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|..
T Consensus 50 ~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~~~~ll~~A~~~~i~~L~~~C~~ 117 (120)
T 2if5_A 50 YFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCAD 117 (120)
T ss_dssp HHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 89999998 4677889999999999999999999999999999999999999999999999999964
No 5
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.63 E-value=2.8e-16 Score=97.68 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=61.8
Q ss_pred chhhhcCCCCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhcCC
Q psy1847 2 EDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAET 69 (86)
Q Consensus 2 YFr~mF~~~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~~~ 69 (86)
|||+||.+.. ...|.|+++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|..-+
T Consensus 49 yF~~~f~~~~--~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l 114 (119)
T 3b84_A 49 FFQSLYGDGS--GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFK 114 (119)
T ss_dssp HHHHHHTTTT--CCCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHCCCC--CCeEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 8999999754 67899999999999999999999999999999999999999999999999997654
No 6
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.63 E-value=2.2e-16 Score=100.27 Aligned_cols=66 Identities=11% Similarity=0.168 Sum_probs=58.9
Q ss_pred chhhhcCCCCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhcCC
Q psy1847 2 EDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAET 69 (86)
Q Consensus 2 YFr~mF~~~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~~~ 69 (86)
|||+||.+.. ...|.|+++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|..-+
T Consensus 50 yF~~mf~~~~--~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l 115 (135)
T 2yy9_A 50 FFQRIYGDGT--GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQ 115 (135)
T ss_dssp HHHHTCC------CCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHcCCC--CCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 8999999754 56899999999999999999999999999999999999999999999999996544
No 7
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.62 E-value=5.5e-16 Score=96.96 Aligned_cols=68 Identities=12% Similarity=0.212 Sum_probs=60.7
Q ss_pred chhhhcCCCCCCCCeEEe-cCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhcCC
Q psy1847 2 EDESLFTEHFDKHPIIIL-KDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAET 69 (86)
Q Consensus 2 YFr~mF~~~e~~~~~V~L-~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~~~ 69 (86)
||++||.+.......|.+ .++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|..-+
T Consensus 54 yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l 122 (124)
T 2ihc_A 54 YFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFL 122 (124)
T ss_dssp HHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred HHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 899999985555578899 49999999999999999999999999999999999999999999998754
No 8
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.62 E-value=5.8e-16 Score=95.52 Aligned_cols=64 Identities=14% Similarity=0.344 Sum_probs=60.0
Q ss_pred chhhhcCCCCCCCCeEEec--CCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847 2 EDESLFTEHFDKHPIIILK--DIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKA 67 (86)
Q Consensus 2 YFr~mF~~~e~~~~~V~L~--~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~ 67 (86)
||++||.+. ....|.|+ ++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|..
T Consensus 47 yF~~~f~~~--~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~ 112 (116)
T 2vpk_A 47 YFGAIYRST--SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKI 112 (116)
T ss_dssp HHHHHHTTC--CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCC--CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 899999976 36678888 99999999999999999999999999999999999999999999975
No 9
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.62 E-value=6.5e-16 Score=96.61 Aligned_cols=66 Identities=18% Similarity=0.398 Sum_probs=61.3
Q ss_pred chhhhcCCCCC-CCCeEEe-cCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847 2 EDESLFTEHFD-KHPIIIL-KDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKA 67 (86)
Q Consensus 2 YFr~mF~~~e~-~~~~V~L-~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~ 67 (86)
||++||.+... ....|.| +++++++++.+|+|+|||++.++.+++.+++.+|++|+++.+++.|..
T Consensus 54 ~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~ 121 (127)
T 1r29_A 54 LFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRK 121 (127)
T ss_dssp HHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 89999998322 6788999 999999999999999999999999999999999999999999999965
No 10
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.61 E-value=4.9e-16 Score=99.81 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=61.4
Q ss_pred chhhhcCCC----CCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhcC
Q psy1847 2 EDESLFTEH----FDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAE 68 (86)
Q Consensus 2 YFr~mF~~~----e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~~ 68 (86)
|||+||.+. ++....|.|+++++++++.+|+|+|||++.++.+++.+++.+|++|++++|++.|..-
T Consensus 72 yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~ 142 (144)
T 2ppi_A 72 YIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEF 142 (144)
T ss_dssp HHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 899999872 3567899999999999999999999999999999999999999999999999999764
No 11
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.61 E-value=5.6e-16 Score=97.40 Aligned_cols=66 Identities=12% Similarity=0.279 Sum_probs=58.4
Q ss_pred chhhhcCCCCCCCCeEEec-CCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhcCC
Q psy1847 2 EDESLFTEHFDKHPIIILK-DIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAET 69 (86)
Q Consensus 2 YFr~mF~~~e~~~~~V~L~-~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~~~ 69 (86)
|||+||.+. ....|.|+ ++++++|+.+|+|+|||++.++.+++.+++.+|++|+++++++.|.+-+
T Consensus 58 ~F~~~f~~~--~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L 124 (129)
T 3ga1_A 58 YFRDLFNNS--RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFF 124 (129)
T ss_dssp HHHHHHHHC--CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTTTHHHHHHHHHHTTBTTSSCC-----
T ss_pred HHHHHHcCC--CCCEEEECCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999976 66789997 9999999999999999999999999999999999999999999997654
No 12
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.60 E-value=1.1e-15 Score=95.17 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=59.5
Q ss_pred chhhhcCCCCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847 2 EDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKA 67 (86)
Q Consensus 2 YFr~mF~~~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~ 67 (86)
||++||.+. ...|.|+++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|.+
T Consensus 53 yF~~~f~~~---~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~ 115 (121)
T 1buo_A 53 MFEILFHRN---SQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLK 115 (121)
T ss_dssp HHHHHTTSC---CSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCC---CcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 899999863 568999999999999999999999999999999999999999999999999965
No 13
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.57 E-value=6e-16 Score=96.17 Aligned_cols=65 Identities=17% Similarity=0.343 Sum_probs=59.9
Q ss_pred chhhhcCCCCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhcCC
Q psy1847 2 EDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAET 69 (86)
Q Consensus 2 YFr~mF~~~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~~~ 69 (86)
||++||.+ ....|.++++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|.+-+
T Consensus 52 yF~~~f~~---~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l 116 (119)
T 2q81_A 52 YFKMLFVD---QKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALK 116 (119)
T ss_dssp HHHHHHHH---CCSGGGGGGCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcC---CCCEEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 89999996 345788999999999999999999999999999999999999999999999997643
No 14
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.56 E-value=4.2e-15 Score=102.23 Aligned_cols=73 Identities=18% Similarity=0.281 Sum_probs=60.2
Q ss_pred chhhhcCCC----CCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhh----cCCCCCC
Q psy1847 2 EDESLFTEH----FDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVK----AETPLEN 73 (86)
Q Consensus 2 YFr~mF~~~----e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~----~~~~~~~ 73 (86)
||++||++. ++....|.|+++++.+|+.+|+|+|||++.++.+++.+++.+|++|+++++++.|. ..++.+|
T Consensus 56 yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n 135 (256)
T 3hve_A 56 YIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAEN 135 (256)
T ss_dssp HHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSST
T ss_pred HHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhh
Confidence 999999972 45678999999999999999999999999999999999999999999999999994 4556666
Q ss_pred C
Q psy1847 74 A 74 (86)
Q Consensus 74 ~ 74 (86)
.
T Consensus 136 ~ 136 (256)
T 3hve_A 136 C 136 (256)
T ss_dssp T
T ss_pred H
Confidence 4
No 15
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.55 E-value=7.8e-15 Score=102.06 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=61.7
Q ss_pred CchhhhcCC--CCCCCCeEEec------CCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhh----cC
Q psy1847 1 MEDESLFTE--HFDKHPIIILK------DIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVK----AE 68 (86)
Q Consensus 1 ~YFr~mF~~--~e~~~~~V~L~------~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~----~~ 68 (86)
.|||+||++ +++....|.|+ ++++.+|+.+|+|+|||++.++.+++.+++.+|++|+++++++.|. +.
T Consensus 59 ~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~ 138 (279)
T 3i3n_A 59 EYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKK 138 (279)
T ss_dssp TTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHc
Confidence 499999998 57778899998 9999999999999999999999999999999999999999999994 34
Q ss_pred CCCCCC
Q psy1847 69 TPLENA 74 (86)
Q Consensus 69 ~~~~~~ 74 (86)
++.+|.
T Consensus 139 l~~~n~ 144 (279)
T 3i3n_A 139 LHLSNC 144 (279)
T ss_dssp CCTTTH
T ss_pred CCcchH
Confidence 555553
No 16
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.54 E-value=4.7e-15 Score=96.04 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=65.9
Q ss_pred chhhhcCC--CCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhh----cCCCCCCC
Q psy1847 2 EDESLFTE--HFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVK----AETPLENA 74 (86)
Q Consensus 2 YFr~mF~~--~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~----~~~~~~~~ 74 (86)
|||+||.+ .++....|.|+++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.+++.|. +.++.+|.
T Consensus 59 ~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~ 137 (172)
T 3htm_A 59 VFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENA 137 (172)
T ss_dssp HHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTH
T ss_pred HHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHH
Confidence 99999998 566778999999999999999999999999999999999999999999999999994 45555554
No 17
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.54 E-value=4.4e-15 Score=92.93 Aligned_cols=57 Identities=12% Similarity=0.286 Sum_probs=53.4
Q ss_pred CCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhcCC
Q psy1847 13 KHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAET 69 (86)
Q Consensus 13 ~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~~~ 69 (86)
....|.|+++++++|+.+|+|+|||++.++.+++.+++.+|++||++.+++.|....
T Consensus 59 ~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~ 115 (119)
T 3m5b_A 59 RGQWALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEACWRAR 115 (119)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999999999999998754
No 18
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.52 E-value=1.8e-15 Score=95.67 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=61.9
Q ss_pred chhhhcCC--CCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhcC----CCCCCCC
Q psy1847 2 EDESLFTE--HFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAE----TPLENAA 75 (86)
Q Consensus 2 YFr~mF~~--~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~~----~~~~~~~ 75 (86)
||++||.+ .++....|.++++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|..- ++.+|..
T Consensus 50 ~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~ 129 (145)
T 4eoz_A 50 VFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAA 129 (145)
T ss_dssp HHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHCC-----------
T ss_pred HHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHH
Confidence 89999998 34556899999999999999999999999999999999999999999999999999654 4555544
No 19
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.50 E-value=1.5e-14 Score=89.77 Aligned_cols=59 Identities=17% Similarity=0.345 Sum_probs=55.5
Q ss_pred chhhhcCCCCCCCCeEEecCCCHHHHHHHHHhhhcceE-EecCCcHHHHHHHHHhcCcccHHh
Q psy1847 2 EDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEV-NISQDQLPSFLKAAASIQLKGLTQ 63 (86)
Q Consensus 2 YFr~mF~~~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l-~i~~~~v~~ll~aA~~Lqi~~l~~ 63 (86)
||++||.+. ...|.++++++.+|+.+|+|+|||++ .++.+++.+++.+|++|+++++++
T Consensus 56 ~F~~~f~~~---~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 56 YFHQLFSVA---GQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHTTSC---CSEEEECSSCHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred HHHHHHcCC---CCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCccccCc
Confidence 899999975 56899999999999999999999999 799999999999999999999875
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.42 E-value=1.4e-13 Score=96.74 Aligned_cols=74 Identities=20% Similarity=0.288 Sum_probs=64.8
Q ss_pred chhhhcCC--CCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhh----cCCCCCCCC
Q psy1847 2 EDESLFTE--HFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVK----AETPLENAA 75 (86)
Q Consensus 2 YFr~mF~~--~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~----~~~~~~~~~ 75 (86)
||++||.+ .++....|.|+++++++|+.+|+|+|||++.++.+++.+++.+|+.|+++.|++.|. +.++.+|..
T Consensus 199 ~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~ 278 (312)
T 3hqi_A 199 VFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAA 278 (312)
T ss_dssp HHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHH
T ss_pred HHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHH
Confidence 89999998 577788999999999999999999999999999999999999999999999999994 455666654
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.32 E-value=7e-13 Score=86.68 Aligned_cols=66 Identities=15% Similarity=0.239 Sum_probs=57.5
Q ss_pred chhhhcCC-C---CCCCCeEEecCCCHHHHHHHHHhhhcce--------------------------EEecCCcHHHHHH
Q psy1847 2 EDESLFTE-H---FDKHPIIILKDIKFTELQSMIDYMYEGE--------------------------VNISQDQLPSFLK 51 (86)
Q Consensus 2 YFr~mF~~-~---e~~~~~V~L~~vs~~~l~~lL~f~YTG~--------------------------l~i~~~~v~~ll~ 51 (86)
|||.||.+ . +.....|.|++|++.+|+.+++|+|+++ +.++.+++.+|+.
T Consensus 25 ~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~id~~~l~eLl~ 104 (159)
T 2ast_A 25 TIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELIL 104 (159)
T ss_dssp HHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHTCSCHHHHHHHHH
T ss_pred HHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHHcCCHHHHHHHHH
Confidence 89999987 2 4555789999999999999999999999 7899999999999
Q ss_pred HHHhcCcccHHhhhhc
Q psy1847 52 AAASIQLKGLTQNVKA 67 (86)
Q Consensus 52 aA~~Lqi~~l~~~c~~ 67 (86)
||++|+|++|.++|+.
T Consensus 105 AAnyL~I~~Lld~~c~ 120 (159)
T 2ast_A 105 AANYLDIKGLLDVTCK 120 (159)
T ss_dssp HHHHHTCHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHH
Confidence 9999999999999964
No 22
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.06 E-value=1.9e-10 Score=69.60 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=48.4
Q ss_pred chhhhcCC----CCCCCCeEEecCCCHHHHHHHHHhhh-----c---ceEE---ecCCcHHHHHHHHHhcCc
Q psy1847 2 EDESLFTE----HFDKHPIIILKDIKFTELQSMIDYMY-----E---GEVN---ISQDQLPSFLKAAASIQL 58 (86)
Q Consensus 2 YFr~mF~~----~e~~~~~V~L~~vs~~~l~~lL~f~Y-----T---G~l~---i~~~~v~~ll~aA~~Lqi 58 (86)
|||+||.+ .+.....|.|++|++.+|+.+++|+| + +++. |+++++.+|+.||++|+.
T Consensus 26 ~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 26 TIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 97 (97)
T ss_dssp HHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCGGGHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCHHHHHHHHHHHhhhCC
Confidence 89999986 34567889999999999999999999 5 7787 999999999999999973
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.00 E-value=1.1e-10 Score=75.00 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=57.8
Q ss_pred chhhhcCCCCCCCCeEEecCCCHHHHHHHHHhhhcce--------------------------EEecCCcHHHHHHHHHh
Q psy1847 2 EDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGE--------------------------VNISQDQLPSFLKAAAS 55 (86)
Q Consensus 2 YFr~mF~~~e~~~~~V~L~~vs~~~l~~lL~f~YTG~--------------------------l~i~~~~v~~ll~aA~~ 55 (86)
|||.||.... ...|.|++|++.+|+.+++|+|+++ +.++.+++.+|+.||++
T Consensus 26 ~ik~ml~~~~--~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~eLi~AAny 103 (141)
T 1fs1_B 26 TIKTMLEDLG--MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANY 103 (141)
T ss_dssp HHHHHHHHTC--CSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7889997632 5679999999999999999999988 67889999999999999
Q ss_pred cCcccHHhhhhcC
Q psy1847 56 IQLKGLTQNVKAE 68 (86)
Q Consensus 56 Lqi~~l~~~c~~~ 68 (86)
|+|++|.+.|+.-
T Consensus 104 L~I~~Lldl~c~~ 116 (141)
T 1fs1_B 104 LDIKGLLDVTCKT 116 (141)
T ss_dssp HTCHHHHHHHHHH
T ss_pred HhhhHHHHHHHHH
Confidence 9999999999643
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.96 E-value=1.9e-10 Score=75.31 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=36.7
Q ss_pred chhhhcCCCCCCCCeEEecCCCHHHHHHHHHhhhcce---------------------------EEecCCcHHHHHHHHH
Q psy1847 2 EDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGE---------------------------VNISQDQLPSFLKAAA 54 (86)
Q Consensus 2 YFr~mF~~~e~~~~~V~L~~vs~~~l~~lL~f~YTG~---------------------------l~i~~~~v~~ll~aA~ 54 (86)
|||.||... +....|.|++|++.+|+.+++|+|+++ +.++.+++.+|+.||+
T Consensus 28 ~ik~ml~~~-~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAn 106 (160)
T 2p1m_A 28 TIAHMVEDD-CVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAAN 106 (160)
T ss_dssp TTC-------------CCTTSCHHHHHHHHHC------------------------------------------CHHHHH
T ss_pred HHHHHHHcc-CCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 788899763 234579999999999999999999998 5788999999999999
Q ss_pred hcCcccHHhhhhcC
Q psy1847 55 SIQLKGLTQNVKAE 68 (86)
Q Consensus 55 ~Lqi~~l~~~c~~~ 68 (86)
+|+|++|.++|+.-
T Consensus 107 yL~I~~Lldl~c~~ 120 (160)
T 2p1m_A 107 YLNIKNLLDLTCQT 120 (160)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHH
Confidence 99999999999643
No 25
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.26 E-value=5.5e-07 Score=59.35 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=52.7
Q ss_pred chhhhcCCCC------CCCCeEEecCCCHHHHHHHHHhhhcce-------------------------EEecCCcHHHHH
Q psy1847 2 EDESLFTEHF------DKHPIIILKDIKFTELQSMIDYMYEGE-------------------------VNISQDQLPSFL 50 (86)
Q Consensus 2 YFr~mF~~~e------~~~~~V~L~~vs~~~l~~lL~f~YTG~-------------------------l~i~~~~v~~ll 50 (86)
++|.|+.... .....|.|++|+..+|+.+++|++..+ +.++.+.+-+|+
T Consensus 31 tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~LfeLi 110 (169)
T 3v7d_A 31 LLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEII 110 (169)
T ss_dssp HHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCSCHHHHHHHH
T ss_pred HHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcCCHHHHHHHH
Confidence 4567776521 223689999999999999999998865 246667889999
Q ss_pred HHHHhcCcccHHhhhhcC
Q psy1847 51 KAAASIQLKGLTQNVKAE 68 (86)
Q Consensus 51 ~aA~~Lqi~~l~~~c~~~ 68 (86)
.||++|+|++|.+.|+..
T Consensus 111 ~AAnyLdIk~Lldl~c~~ 128 (169)
T 3v7d_A 111 LAANYLNIKPLLDAGCKV 128 (169)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHH
Confidence 999999999999999653
No 26
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.21 E-value=1.5e-06 Score=52.35 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=46.4
Q ss_pred chhhhcCC----CCCCCCeEEecCCCHHHHHHHHHhhhcce-----------EEecCCcHHHHHHHHHhcCc
Q psy1847 2 EDESLFTE----HFDKHPIIILKDIKFTELQSMIDYMYEGE-----------VNISQDQLPSFLKAAASIQL 58 (86)
Q Consensus 2 YFr~mF~~----~e~~~~~V~L~~vs~~~l~~lL~f~YTG~-----------l~i~~~~v~~ll~aA~~Lqi 58 (86)
++|.|+.. .+.....|.|++|+..+|+.+++|+|..+ -.++.+.+-+|+.||++|+|
T Consensus 25 ~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 25 TIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 96 (96)
T ss_dssp HHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCTTTHHHHHHHHHHHTC
T ss_pred HHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCHHHHHHHHHHHHHhCc
Confidence 57888876 23345689999999999999999999876 26888999999999999986
No 27
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.04 E-value=3.8e-06 Score=50.87 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=47.1
Q ss_pred chhhhcCC-CCCCCCeEEecCCCHHHHHHHHHhhhcce--------------EEecCCcHHHHHHHHHhcCc
Q psy1847 2 EDESLFTE-HFDKHPIIILKDIKFTELQSMIDYMYEGE--------------VNISQDQLPSFLKAAASIQL 58 (86)
Q Consensus 2 YFr~mF~~-~e~~~~~V~L~~vs~~~l~~lL~f~YTG~--------------l~i~~~~v~~ll~aA~~Lqi 58 (86)
++|.||.. -+.....|.|++|+..+|+.+++|+|..+ -.++.+.+-+|+.||++|+|
T Consensus 28 ~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 28 TLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp HHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCCHHHHHHHHHHHHHhCc
Confidence 57888876 22334689999999999999999999876 25677889999999999986
No 28
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.90 E-value=2.5e-05 Score=47.66 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=52.2
Q ss_pred chhhhcCCC------CCCCCeEEecCCCHHHHHHHHHhhhcceEEecCC-cHHHHHHHHHhcCcccHHhhhhcC
Q psy1847 2 EDESLFTEH------FDKHPIIILKDIKFTELQSMIDYMYEGEVNISQD-QLPSFLKAAASIQLKGLTQNVKAE 68 (86)
Q Consensus 2 YFr~mF~~~------e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~-~v~~ll~aA~~Lqi~~l~~~c~~~ 68 (86)
+|.+||... ......+.| |-++..|+.||+|+.+|++.++.+ ....+++-|.++++++|++.|.+.
T Consensus 31 ~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~~Ea~fy~l~~L~~~l~~~ 103 (107)
T 3drz_A 31 FLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDK 103 (107)
T ss_dssp HHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 466777652 113345665 789999999999999999988654 468899999999999999999753
No 29
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.69 E-value=3.2e-05 Score=47.81 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=45.2
Q ss_pred chhhhcCCC----CCCCCeEEecCCCHHHHHHHHHhhhcceE-----------EecCCcHHHHHHHHHhcCc
Q psy1847 2 EDESLFTEH----FDKHPIIILKDIKFTELQSMIDYMYEGEV-----------NISQDQLPSFLKAAASIQL 58 (86)
Q Consensus 2 YFr~mF~~~----e~~~~~V~L~~vs~~~l~~lL~f~YTG~l-----------~i~~~~v~~ll~aA~~Lqi 58 (86)
.+|.|+... +.....|.|++|+..+|+.+++|++..+- .++.+.+-+|+.||++|+|
T Consensus 41 tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 41 TIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112 (112)
T ss_dssp HHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccCHHHHHHHHHHHHHhCc
Confidence 467788752 23346899999999999999999988762 5778899999999999986
No 30
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=96.64 E-value=0.0024 Score=43.27 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=51.4
Q ss_pred chhhhcCCCC------CCCCeEEecCCCHHHHHHHHHhhhcceEEecCC-cHHHHHHHHHhcCcccHHhhhhcCC
Q psy1847 2 EDESLFTEHF------DKHPIIILKDIKFTELQSMIDYMYEGEVNISQD-QLPSFLKAAASIQLKGLTQNVKAET 69 (86)
Q Consensus 2 YFr~mF~~~e------~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~-~v~~ll~aA~~Lqi~~l~~~c~~~~ 69 (86)
+|..||.... .....+.| |-++..|+.||+|+-+|++.++.+ ....+++-|.+++|.+|++.|.+.+
T Consensus 37 ~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~~~~~~l~eEA~FygL~~Lv~~l~~~i 110 (202)
T 3drx_A 37 FLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKI 110 (202)
T ss_dssp STHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 4566776521 12345555 678999999999999999988554 4578999999999999999995544
No 31
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=95.94 E-value=0.0089 Score=37.33 Aligned_cols=52 Identities=6% Similarity=0.082 Sum_probs=42.6
Q ss_pred CCeEEecCCCHHHHHHHHHhhhcceEEecCC-cHHHHHHHHHhcCcccH-Hhhhh
Q psy1847 14 HPIIILKDIKFTELQSMIDYMYEGEVNISQD-QLPSFLKAAASIQLKGL-TQNVK 66 (86)
Q Consensus 14 ~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~-~v~~ll~aA~~Lqi~~l-~~~c~ 66 (86)
...+.| |=++..|+.||+|+-+|++.++.+ .+..+++-|.+++|..+ .+.||
T Consensus 52 ~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~~Ea~fy~i~~l~l~~cC 105 (124)
T 1s1g_A 52 TKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCC 105 (124)
T ss_dssp SCSEEE-CSCHHHHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHTTCCGGGBCHHH
T ss_pred CCcEEE-cCChHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHcCCChHHHHHHH
Confidence 345555 559999999999999999987654 58999999999999887 46664
No 32
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=95.48 E-value=0.014 Score=37.20 Aligned_cols=52 Identities=6% Similarity=0.082 Sum_probs=42.6
Q ss_pred CCeEEecCCCHHHHHHHHHhhhcceEEecCC-cHHHHHHHHHhcCcccH-Hhhhh
Q psy1847 14 HPIIILKDIKFTELQSMIDYMYEGEVNISQD-QLPSFLKAAASIQLKGL-TQNVK 66 (86)
Q Consensus 14 ~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~-~v~~ll~aA~~Lqi~~l-~~~c~ 66 (86)
...+.| |=++..|+.||+|+-+|++.++.+ .+..+++-|.+++|..+ .+.|+
T Consensus 74 ~g~yFi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~eEa~fy~i~~l~l~~CC 127 (140)
T 2nz0_B 74 TKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCC 127 (140)
T ss_dssp TTEEEE-CSCHHHHHHHHHHHHHSSBCCCTTSCHHHHHHHHHHHTCCGGGBCTTT
T ss_pred CCeEEE-eCCcHHHHHHHHHHhcCCcCCCCCcCHHHHHHHHHHcCCChHHHHHHH
Confidence 345555 559999999999999999987654 58999999999999887 56664
No 33
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=95.28 E-value=0.0077 Score=36.47 Aligned_cols=51 Identities=8% Similarity=0.137 Sum_probs=41.5
Q ss_pred CeEEecCCCHHHHHHHHHhhhcceEEecCC-cHHHHHHHHHhcCcccH-Hhhhh
Q psy1847 15 PIIILKDIKFTELQSMIDYMYEGEVNISQD-QLPSFLKAAASIQLKGL-TQNVK 66 (86)
Q Consensus 15 ~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~-~v~~ll~aA~~Lqi~~l-~~~c~ 66 (86)
..+.| |=++..|+.||+|+-+|++.++.+ .+..+++-|.+++|+.+ .+.|+
T Consensus 40 ~~~Fi-DRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~Ea~fy~i~~l~~~~cc 92 (105)
T 1nn7_A 40 QQYFF-DRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCC 92 (105)
T ss_dssp TEEEE-CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHHTCCSCCBCHHH
T ss_pred CcEEE-eCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHcCCCHHHHHHHH
Confidence 45555 458899999999999999987654 58899999999999886 46664
No 34
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=94.44 E-value=0.027 Score=34.60 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=41.8
Q ss_pred CCeEEecCCCHHHHHHHHHhhhcceEEecCC-cHHHHHHHHHhcCcccH-Hhhhh
Q psy1847 14 HPIIILKDIKFTELQSMIDYMYEGEVNISQD-QLPSFLKAAASIQLKGL-TQNVK 66 (86)
Q Consensus 14 ~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~-~v~~ll~aA~~Lqi~~l-~~~c~ 66 (86)
...+.| |=++..|+.||+|+-+|++.++.+ .+..+++-|.+++|... .+.||
T Consensus 45 ~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea~fy~i~~~~l~~CC 98 (115)
T 3kvt_A 45 LNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCC 98 (115)
T ss_dssp TTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHHHHTCCGGGBCGGG
T ss_pred CCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHhCCChHHHHHHH
Confidence 455665 578899999999999999988764 57899999999999665 34454
No 35
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=93.37 E-value=0.12 Score=30.92 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=41.1
Q ss_pred CCCeEEecCCCHHHHHHHHHhhhc-ceEEecC-CcHHHHHHHHHhcCcccH-Hhhh
Q psy1847 13 KHPIIILKDIKFTELQSMIDYMYE-GEVNISQ-DQLPSFLKAAASIQLKGL-TQNV 65 (86)
Q Consensus 13 ~~~~V~L~~vs~~~l~~lL~f~YT-G~l~i~~-~~v~~ll~aA~~Lqi~~l-~~~c 65 (86)
....+.| |=++..|+.||+|+-| |++.++. -.+..+++-|.+++|..+ .+.|
T Consensus 40 ~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea~fy~i~~~~~~~~ 94 (100)
T 1t1d_A 40 LRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEIKFYELGENAFERY 94 (100)
T ss_dssp TTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHHHHTTCCHHHHHHH
T ss_pred CceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3456666 6689999999999999 9998754 457889999999999764 4444
No 36
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=76.76 E-value=5.3 Score=29.83 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=39.9
Q ss_pred CCCeEEecCCCHHHHHHHHHhhhc-ceEEecCC-cHHHHHHHHHhcCcccHH
Q psy1847 13 KHPIIILKDIKFTELQSMIDYMYE-GEVNISQD-QLPSFLKAAASIQLKGLT 62 (86)
Q Consensus 13 ~~~~V~L~~vs~~~l~~lL~f~YT-G~l~i~~~-~v~~ll~aA~~Lqi~~l~ 62 (86)
....+.+ |=++..|+.||+|..| |++..+.+ .+..+.+-|.++++.+..
T Consensus 91 ~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 91 LRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEA 141 (514)
T ss_dssp TTTEEEE-CSCHHHHHHHHHHHHHTSCCCCCTTSCHHHHHHHHHHTTCCHHH
T ss_pred CCCCEEE-cCChHHHHHHHHHHhcCCccccCCcccHHHHHHHHHhcCCCHHH
Confidence 3456666 7799999999999999 99987654 577799999999997653
No 37
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=66.75 E-value=0.59 Score=29.10 Aligned_cols=67 Identities=16% Similarity=0.313 Sum_probs=45.8
Q ss_pred chhhhcCC-CCCCCCeEE---ecCCCHHHH-----HHHHHhhhcce-EEe-cCCcHHHHHHHHHhcCcccHHhhhhcC
Q psy1847 2 EDESLFTE-HFDKHPIII---LKDIKFTEL-----QSMIDYMYEGE-VNI-SQDQLPSFLKAAASIQLKGLTQNVKAE 68 (86)
Q Consensus 2 YFr~mF~~-~e~~~~~V~---L~~vs~~~l-----~~lL~f~YTG~-l~i-~~~~v~~ll~aA~~Lqi~~l~~~c~~~ 68 (86)
|||+||.. +......+. +.++++..+ +++||=+=-|- +.+ .++.|..++.-.....++++.-.|.++
T Consensus 20 ~fRk~fkD~R~~GskKvviNvis~~~y~e~v~~~REAiLDNIDlG~el~~WKp~eVdkm~~k~~q~~~dGl~iYCDde 97 (126)
T 2rbg_A 20 YFRKIFLDVRSSGSKKTTINVFTEIQYQELVTLIREALLENIDIGYELFLWKKNEVDIFLKNLEKSEVDGLLVYCDDE 97 (126)
T ss_dssp HHHHHHHHHHHHTCSEEEEEEECSSCHHHHHHHTHHHHHHTTTSEEEEEEECGGGHHHHHHHHTTCCCCEEEEEECGG
T ss_pred HHHHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHHHHHhccccceEEEEeCHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 79999998 444444444 456665433 44555444443 222 568999999999999999999999654
No 38
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.74 E-value=3.9 Score=23.85 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=26.9
Q ss_pred cceEEecCCcHHHHHHHHHhcCcccHHhhhh
Q psy1847 36 EGEVNISQDQLPSFLKAAASIQLKGLTQNVK 66 (86)
Q Consensus 36 TG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~ 66 (86)
++.-.++.+|...++..|+.++.+.|.+.|.
T Consensus 3 ~~~~~L~~~NCl~i~~~A~~~~~~~L~~~a~ 33 (105)
T 2eqx_A 3 SGSSGVQVGNCLQVMWLADRHSDPELYTAAK 33 (105)
T ss_dssp CCCCCCCTTTHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455789999999999999999999998883
No 39
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=58.35 E-value=4.3 Score=18.51 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=12.3
Q ss_pred CcHHHHHHHHHhcC
Q psy1847 44 DQLPSFLKAAASIQ 57 (86)
Q Consensus 44 ~~v~~ll~aA~~Lq 57 (86)
.||+-||+||.+|.
T Consensus 3 ~nvq~LLeAAeyLE 16 (26)
T 1pd7_B 3 MNIQMLLEAADYLE 16 (26)
T ss_dssp CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 58899999999985
No 40
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=56.38 E-value=8.3 Score=20.78 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=30.5
Q ss_pred cCCCHHHHHHHHHhhhcceE---EecCCcHHHHHHHHHhcCcc
Q psy1847 20 KDIKFTELQSMIDYMYEGEV---NISQDQLPSFLKAAASIQLK 59 (86)
Q Consensus 20 ~~vs~~~l~~lL~f~YTG~l---~i~~~~v~~ll~aA~~Lqi~ 59 (86)
-||+...++.+|+ |+- .|+++....+..+|..|+..
T Consensus 10 aGVS~sTVSrvLn----g~~~~~~vs~et~~rI~~aa~~lgY~ 48 (65)
T 1uxc_A 10 AGVSRTTASYVIN----GKAKQYRVSDKTVEKVMAVVREHNYH 48 (65)
T ss_dssp HTSCHHHHHHHHH----TCTTTTTCTTHHHHHHHHHHHHHTCC
T ss_pred HCcCHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 4788888888876 777 89999999999999998864
No 41
>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=53.58 E-value=6.7 Score=26.15 Aligned_cols=14 Identities=21% Similarity=0.563 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhcce
Q psy1847 25 TELQSMIDYMYEGE 38 (86)
Q Consensus 25 ~~l~~lL~f~YTG~ 38 (86)
.....+|.|||+|+
T Consensus 186 ~~~~~vl~f~~~G~ 199 (200)
T 4h63_H 186 QMLTDILSFMKSGK 199 (200)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHhcCC
Confidence 45678999999996
No 42
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=48.43 E-value=13 Score=22.70 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=24.7
Q ss_pred EecCCcHHHHHHHHHhcCcccHHhhhh
Q psy1847 40 NISQDQLPSFLKAAASIQLKGLTQNVK 66 (86)
Q Consensus 40 ~i~~~~v~~ll~aA~~Lqi~~l~~~c~ 66 (86)
.++.+|+..++..|..++.+.|.+.|.
T Consensus 131 ~l~~~n~~~~~~~A~~~~~~~L~~~~~ 157 (172)
T 3htm_A 131 NLSVENAAEILILADLHSADQLKTQAV 157 (172)
T ss_dssp TCCTTTHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 468899999999999999999999994
No 43
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=40.59 E-value=18 Score=24.43 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=25.1
Q ss_pred EecCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847 40 NISQDQLPSFLKAAASIQLKGLTQNVKA 67 (86)
Q Consensus 40 ~i~~~~v~~ll~aA~~Lqi~~l~~~c~~ 67 (86)
.++.+|+..++..|..++...|++.|-.
T Consensus 271 ~~~~~n~~~~l~~A~~~~~~~L~~~~~~ 298 (312)
T 3hqi_A 271 NLSVENAAEILILADLHSADQLKTQAVD 298 (312)
T ss_dssp TCCTTTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3678999999999999999999999943
No 44
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=33.89 E-value=17 Score=19.61 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=29.7
Q ss_pred cCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcc
Q psy1847 20 KDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLK 59 (86)
Q Consensus 20 ~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~ 59 (86)
-||+...++.+|. |.-.|+++....++.+|..|+..
T Consensus 19 aGVS~sTVSr~ln----~~~~vs~~t~~rV~~~a~~lgY~ 54 (67)
T 2l8n_A 19 AKVSTATVSRALM----NPDKVSQATRNRVEKAAREVGYL 54 (67)
T ss_dssp TTCCHHHHHHTTT----CCCCSCHHHHHHHHHHHHHHCCC
T ss_pred HCCCHHHHHHHHc----CCCCCCHHHHHHHHHHHHHhCCC
Confidence 5788877777665 77779999999999999999874
No 45
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=31.08 E-value=27 Score=19.23 Aligned_cols=17 Identities=0% Similarity=0.389 Sum_probs=14.6
Q ss_pred cCCCHHHHHHHHHhhhc
Q psy1847 20 KDIKFTELQSMIDYMYE 36 (86)
Q Consensus 20 ~~vs~~~l~~lL~f~YT 36 (86)
..+++.+...|++|+|-
T Consensus 17 ~~~~~~v~~~L~e~~~r 33 (68)
T 1taf_A 17 QEYEPRVVNQLLEFTFR 33 (68)
T ss_dssp CCBCTHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHH
Confidence 56789999999999985
No 46
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=25.63 E-value=27 Score=22.28 Aligned_cols=26 Identities=15% Similarity=0.432 Sum_probs=20.6
Q ss_pred ecCCCHHHHHHHHHhhhcceEEecCC
Q psy1847 19 LKDIKFTELQSMIDYMYEGEVNISQD 44 (86)
Q Consensus 19 L~~vs~~~l~~lL~f~YTG~l~i~~~ 44 (86)
++.++.+....|+.|+|.|=-.-+..
T Consensus 95 v~~L~~e~~D~LMKYiYkGm~~~~~~ 120 (151)
T 1k8k_G 95 VQSLDKNGVDLLMKYIYKGFESPSDN 120 (151)
T ss_dssp HHTSCHHHHHHHHHHHHHHHTSCCTT
T ss_pred HHHhChhhhhHHHHHHHHhhcCcCCC
Confidence 46788899999999999986554443
No 47
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=24.20 E-value=36 Score=15.12 Aligned_cols=13 Identities=15% Similarity=0.669 Sum_probs=10.5
Q ss_pred HHHHHHhhhcceE
Q psy1847 27 LQSMIDYMYEGEV 39 (86)
Q Consensus 27 l~~lL~f~YTG~l 39 (86)
+..+|.|.+||+-
T Consensus 9 vddvlkftftgek 21 (27)
T 2hzs_I 9 VDDVLKFTFTGEK 21 (27)
T ss_dssp HHHHHHHHHHCCC
T ss_pred hhheEEEEecccc
Confidence 5678999999974
No 48
>4gwp_C Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_C 3rj1_C 1edi_A 1edj_A 1edk_A 1edl_A
Probab=22.91 E-value=30 Score=25.54 Aligned_cols=19 Identities=21% Similarity=0.480 Sum_probs=14.4
Q ss_pred CHHHHHHHHHhhhcceEEe
Q psy1847 23 KFTELQSMIDYMYEGEVNI 41 (86)
Q Consensus 23 s~~~l~~lL~f~YTG~l~i 41 (86)
++-....||.|||+|+...
T Consensus 194 ~p~~~~~VLkFm~~G~~P~ 212 (407)
T 4gwp_C 194 KPFNVDDVLKFTFTGEKPI 212 (407)
T ss_dssp CSSCHHHHHHHHHHCCCCC
T ss_pred CCCCHHHHHHHHhcCCCcc
Confidence 3444788999999998543
No 49
>2aze_C Retinoblastoma-associated protein; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: j.119.1.1
Probab=22.66 E-value=32 Score=17.52 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=16.4
Q ss_pred HHHhcC-cccHHhhh----hcCCCCCCCCCCCC
Q psy1847 52 AAASIQ-LKGLTQNV----KAETPLENAAKPLP 79 (86)
Q Consensus 52 aA~~Lq-i~~l~~~c----~~~~~~~~~~~~~~ 79 (86)
.++.|| |..++..| .+..-..+|.|||.
T Consensus 13 ~~~rFQKINqMvnss~r~~KR~~d~~~apKPLK 45 (46)
T 2aze_C 13 TSEKFQKINQMVCNSDRVLKRSAEGSNPPKPLK 45 (46)
T ss_dssp HHHHHHHHHHHHHCCTTCCCCCSTTCCCCCCC-
T ss_pred chHHHHHHHHHHhhhhHhhhhhccCCCCCCccc
Confidence 455555 66666666 34445667778873
No 50
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=22.11 E-value=26 Score=22.39 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=27.3
Q ss_pred ecCCCHHHHHHHHHhhhcceEEecCC----cHHHHHHHHHhcCcccHHhhhh
Q psy1847 19 LKDIKFTELQSMIDYMYEGEVNISQD----QLPSFLKAAASIQLKGLTQNVK 66 (86)
Q Consensus 19 L~~vs~~~l~~lL~f~YTG~l~i~~~----~v~~ll~aA~~Lqi~~l~~~c~ 66 (86)
++.++.+....|+.|+|.|=-.-+.. -+.+--.+-..-++..++....
T Consensus 96 v~~L~~~~~D~LMKYiYkGm~~~~~~~~~~LL~WHEKl~e~~G~G~IvRvlt 147 (152)
T 3dwl_G 96 VKECSTEEIDNIVNFIYRGLANPQAYNSSVLLNWHEKVVEISGIGCIVRVLN 147 (152)
T ss_dssp HHHSCHHHHHHHHHHHHHHTTC----CCSHHHHHHHHHHHTTCSHHHHHHTT
T ss_pred HHHhCHHHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHcCCCceEEEec
Confidence 46778889999999999985433211 1333333444445555554443
No 51
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=21.96 E-value=84 Score=18.00 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=17.9
Q ss_pred eEEecCCCHHHHHHHHHhhhc
Q psy1847 16 IIILKDIKFTELQSMIDYMYE 36 (86)
Q Consensus 16 ~V~L~~vs~~~l~~lL~f~YT 36 (86)
.+.|.+++.+.-+.++||+-.
T Consensus 32 vvNL~~ld~~~AqRivDF~sG 52 (87)
T 3p04_A 32 VFDMSLLSREEARRIVDFAAG 52 (87)
T ss_dssp EEECTTSCHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHhcc
Confidence 466899999999999999754
No 52
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=20.16 E-value=57 Score=21.77 Aligned_cols=35 Identities=9% Similarity=0.188 Sum_probs=30.9
Q ss_pred cCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCc
Q psy1847 20 KDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQL 58 (86)
Q Consensus 20 ~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi 58 (86)
-|||..+++.+|+ |+-.|+++..+.++++|..|+.
T Consensus 10 agVS~~TVSrvLn----~~~~vs~~tr~rV~~~a~~lgY 44 (340)
T 1qpz_A 10 ANVSTTTVSHVIN----KTRFVAEETRNAVWAAIKELHY 44 (340)
T ss_dssp HTSCHHHHHHHHH----TCSCCCHHHHHHHHHHHHHHTC
T ss_pred HCCCHHHHHHHHc----CcCCCCHHHHHHHHHHHHHhCC
Confidence 4789999999988 7777999999999999999986
Done!