RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1847
(86 letters)
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 42.2 bits (100), Expect = 8e-07
Identities = 7/54 (12%), Positives = 26/54 (48%)
Query: 5 SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQL 58
+++ + + + +K Q +++++Y G +N+ + +AA +++
Sbjct: 50 AIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKV 103
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 40.3 bits (95), Expect = 6e-06
Identities = 7/57 (12%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 5 SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGL 61
++ + ++L ++D+ Y G + ++ L AA +++
Sbjct: 53 RIYGD--GTGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEA 107
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 40.3 bits (95), Expect = 6e-06
Identities = 7/55 (12%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 5 SLFTEHFD-KHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQL 58
S D + I + +++ + +I + Y ++ +S++ + K + +
Sbjct: 57 SRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSV 111
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 39.5 bits (93), Expect = 9e-06
Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 5 SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGL 61
LF D+ ++ L L ++++MY ++++S + + L A +Q++ +
Sbjct: 55 MLFV---DQKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDI 108
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 39.5 bits (93), Expect = 1e-05
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 5 SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQL 58
SL+ + ++L ++D+ Y G + ++ L AA +++
Sbjct: 52 SLYGD--GSGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRV 103
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 39.6 bits (93), Expect = 1e-05
Identities = 6/55 (10%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 5 SLFTEHFD-KHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQL 58
S D + + + +++ + +I + Y ++ +S+D + + + +
Sbjct: 64 SRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSV 118
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 39.5 bits (93), Expect = 1e-05
Identities = 4/58 (6%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 5 SLFTEHF-DKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGL 61
+ + + +++ ++ + Y ++ +S++ + ++ A +++ L
Sbjct: 60 QALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNL 117
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 39.1 bits (92), Expect = 1e-05
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 5 SLFTEHF--DKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGL 61
LFT D+ + + + L +++D+ Y + +S + L AA +++ +
Sbjct: 53 KLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAV 111
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 38.0 bits (89), Expect = 4e-05
Identities = 7/60 (11%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 4 ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
+ + I + +++++Y V + +L +AA ++ ++ L +
Sbjct: 57 GRRGQW-------ALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEE 109
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 37.6 bits (88), Expect = 5e-05
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 5 SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQL 58
LF + L + Q +++Y Y + + L L AA +++
Sbjct: 56 ILFHRNSQH---YTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEI 106
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 37.6 bits (88), Expect = 6e-05
Identities = 7/57 (12%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 5 SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGL 61
LF + + ++ Q ++ + Y G ++++ + A +Q++ +
Sbjct: 61 DLFNNS-RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEI 116
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 37.7 bits (88), Expect = 8e-05
Identities = 10/46 (21%), Positives = 26/46 (56%)
Query: 13 KHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQL 58
I L+ I ++ ++DY++ G++ +++D + ++AA + L
Sbjct: 87 STYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLL 132
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 37.2 bits (87), Expect = 8e-05
Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 5 SLFTEHF--DKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQL 58
S+FT+ + I + +I ++D+MY +N+ + + + + A +Q+
Sbjct: 57 SIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQM 112
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 38.0 bits (89), Expect = 1e-04
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 17 IILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
I L+ I ++ ++DY++ G++ +++D + ++AA + L L
Sbjct: 75 IELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKT 121
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 36.8 bits (86), Expect = 1e-04
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 17 IILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGL 61
I + D++ ++ YMY E+++ D + + L AA + L
Sbjct: 53 IHIPDVEPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPAL 97
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 33.8 bits (78), Expect = 0.002
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 5 SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGE-VNISQDQLPSFLKAAASIQLKGL 61
LF+ ++ L I+ +++Y+Y + V + D L +K+ + +K +
Sbjct: 59 QLFS---VAGQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFI 113
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 34.5 bits (79), Expect = 0.002
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 13 KHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGL 61
K + + D++ + M+ ++Y G+ L AA L+ L
Sbjct: 212 KKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 260
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 33.4 bits (77), Expect = 0.004
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 5 SLFTEHFD--KHPIIILKDIKFTE------LQSMIDYMYEGEVNISQDQLPSFLKAAASI 56
L + F + + ++ ++++I+YMY G + +S + L+ A
Sbjct: 63 PLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRF 122
Query: 57 QLKGLTQ 63
L L +
Sbjct: 123 LLIRLKE 129
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 32.5 bits (75), Expect = 0.006
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 17 IILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGL 61
+ + D++ + M+ ++Y G+ L AA L+ L
Sbjct: 67 VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 111
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 32.2 bits (74), Expect = 0.009
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 17 IILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGL 61
+ + D++ + M+ ++Y G+ L AA L+ L
Sbjct: 76 VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 120
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.042
Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 25/83 (30%)
Query: 15 PIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASI--------------QLKG 60
P++ + ++ ++Q ++ + N LP+ + S+ L G
Sbjct: 337 PMLSISNLTQEQVQDYVN-----KTN---SHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 61 LT---QNVKAETPLENAAKPLPQ 80
L + KA + L+ + P +
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSE 411
Score = 25.8 bits (56), Expect = 1.8
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 20/78 (25%)
Query: 3 DE--SLFTEHFDKHPIII-LKDIKFTELQSMI------DYMYEGEVNISQ-----DQLPS 48
+E L+ + H ++ L L +I + ++ +NI + P
Sbjct: 171 EELRDLYQTY---HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 49 ---FLKAAASIQLKGLTQ 63
L S L G+ Q
Sbjct: 228 KDYLLSIPISCPLIGVIQ 245
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 1.6
Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 19/100 (19%)
Query: 2 EDESLFTEHFDKHPIIILKDIK-------F---------TELQSMIDYMYEGEV-NISQD 44
E L ++ +++L +++ F T + + D++ +IS D
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 45 QLPSFLKAAASIQLKGLTQNVKAET-PLENAAKPLPQVNS 83
L L + + + P E P+ S
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRLS 331
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase,
fosfomyc binding, transferase; 2.50A {Streptomyces
tendae}
Length = 479
Score = 25.2 bits (56), Expect = 2.8
Identities = 4/44 (9%), Positives = 8/44 (18%), Gaps = 7/44 (15%)
Query: 40 NISQDQLPSFLKAAASIQLKGLTQN-----VKAE--TPLENAAK 76
I + G + T L++
Sbjct: 174 TIDMLDYTRNKALMSGPCYSGAVKTALLMGAVTHGTTTLQHPYL 217
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 2.9
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 57 QLKGLTQNVKAETPLENAAKPLPQVNS 83
LK L ++K ++A P + +
Sbjct: 21 ALKKLQASLKLYAD-DSA--PALAIKA 44
>2ga0_A Surface protein VSPA; helical bundle, NI(II) binding sites, immune
system; 2.70A {Borrelia turicatae}
Length = 181
Score = 24.6 bits (53), Expect = 4.9
Identities = 7/37 (18%), Positives = 20/37 (54%)
Query: 37 GEVNISQDQLPSFLKAAASIQLKGLTQNVKAETPLEN 73
++N + D L + +AA + + L+ K+ + +++
Sbjct: 144 IKLNTAIDALLTSAEAAVTAAINALSTPAKSASTVQS 180
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology,
structural genomics, NEW YORK structura genomics
research consortium; 2.20A {Sinorhizobium meliloti}
Length = 184
Score = 23.8 bits (52), Expect = 7.8
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 42 SQDQLPSFLKAAASIQLKG 60
S + LP +L+ +I +G
Sbjct: 73 SLNHLPGYLENRDAILARG 91
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein,
oxidoreductase; 2.80A {Pisum sativum}
Length = 171
Score = 23.7 bits (52), Expect = 8.1
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 42 SQDQLPSFLKAAASIQLKG 60
S +P + + KG
Sbjct: 60 SSKHVPPYKHNIDKFKAKG 78
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
transport; 2.80A {Haemophilus influenzae} SCOP:
c.47.1.1 c.47.1.10
Length = 241
Score = 23.9 bits (52), Expect = 8.2
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 42 SQDQLPSFLKAAASIQLKG 60
S LP + + A + G
Sbjct: 50 SSSHLPRYNELAPVFKKYG 68
>4f82_A Thioredoxin reductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.85A
{Burkholderia cenocepacia}
Length = 176
Score = 23.7 bits (52), Expect = 9.1
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 42 SQDQLPSFLKAAASIQLKG 60
S +P +++ A ++ G
Sbjct: 64 SAQHVPGYVEHAEQLRAAG 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.130 0.353
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,171,490
Number of extensions: 55336
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 37
Length of query: 86
Length of database: 6,701,793
Length adjustment: 54
Effective length of query: 32
Effective length of database: 5,194,059
Effective search space: 166209888
Effective search space used: 166209888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)